BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1537

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|13881213|gb|AAK45855.1|  DNA-damage-inducible protein P, putat...   917    0.0   
gi|161350072|ref|NP_336041.2|  DNA polymerase IV [Mycobacterium t...   915    0.0   
gi|121637458|ref|YP_977681.1|  DNA polymerase IV [Mycobacterium b...   915    0.0   
gi|253799408|ref|YP_003032409.1|  DNA polymerase IV dinX [Mycobac...   912    0.0   
gi|148822761|ref|YP_001287515.1|  DNA polymerase IV [Mycobacteriu...   912    0.0   
gi|289761700|ref|ZP_06521078.1|  DNA polymerase IV dinX (pol IV 1...   909    0.0   
gi|289750104|ref|ZP_06509482.1|  DNA polymerase IV [Mycobacterium...   748    0.0   
gi|296164411|ref|ZP_06846986.1|  DNA polymerase IV 1 [Mycobacteri...   711    0.0   
gi|240167929|ref|ZP_04746588.1|  DNA polymerase IV [Mycobacterium...   711    0.0   
gi|254821465|ref|ZP_05226466.1|  DNA polymerase IV [Mycobacterium...   699    0.0   
gi|183982372|ref|YP_001850663.1|  DNA polymerase IV, DinP_1 [Myco...   696    0.0   
gi|41407346|ref|NP_960182.1|  DNA polymerase IV [Mycobacterium av...   694    0.0   
gi|118617186|ref|YP_905518.1|  DNA polymerase IV [Mycobacterium u...   692    0.0   
gi|118466313|ref|YP_882415.1|  DNA polymerase IV [Mycobacterium a...   692    0.0   
gi|254775682|ref|ZP_05217198.1|  DNA polymerase IV [Mycobacterium...   691    0.0   
gi|336457942|gb|EGO36932.1|  nucleotidyltransferase/DNA polymeras...   686    0.0   
gi|342860881|ref|ZP_08717531.1|  DNA polymerase IV [Mycobacterium...   679    0.0   
gi|161407222|ref|YP_640258.2|  DNA polymerase IV [Mycobacterium s...   636    2e-180
gi|119869187|ref|YP_939139.1|  DNA polymerase IV [Mycobacterium s...   636    2e-180
gi|126435694|ref|YP_001071385.1|  DNA polymerase IV [Mycobacteriu...   636    3e-180
gi|118473834|ref|YP_887486.1|  DNA polymerase IV [Mycobacterium s...   633    2e-179
gi|333990828|ref|YP_004523442.1|  DNA polymerase IV [Mycobacteriu...   618    7e-175
gi|145224226|ref|YP_001134904.1|  DNA polymerase IV [Mycobacteriu...   608    9e-172
gi|120403755|ref|YP_953584.1|  DNA polymerase IV [Mycobacterium v...   598    6e-169
gi|169629787|ref|YP_001703436.1|  DNA polymerase IV [Mycobacteriu...   576    3e-162
gi|333920349|ref|YP_004493930.1|  DNA polymerase IV 1 [Amycolicic...   537    2e-150
gi|161598445|ref|YP_117989.2|  DNA polymerase IV [Nocardia farcin...   525    8e-147
gi|54015255|dbj|BAD56625.1|  putative DNA polymerase IV family pr...   524    1e-146
gi|296140331|ref|YP_003647574.1|  DNA-directed DNA polymerase [Ts...   522    5e-146
gi|226360219|ref|YP_002777997.1|  DNA polymerase IV [Rhodococcus ...   511    7e-143
gi|111018090|ref|YP_701062.1|  DNA polymerase IV [Rhodococcus jos...   511    1e-142
gi|262202895|ref|YP_003274103.1|  DNA-directed DNA polymerase [Go...   506    2e-141
gi|312140131|ref|YP_004007467.1|  DNA polymerase iv [Rhodococcus ...   501    8e-140
gi|325674388|ref|ZP_08154076.1|  DNA polymerase IV 1 [Rhodococcus...   500    2e-139
gi|326382572|ref|ZP_08204263.1|  DNA polymerase IV [Gordonia neof...   496    4e-138
gi|229490455|ref|ZP_04384296.1|  DNA polymerase IV 1 [Rhodococcus...   496    5e-138
gi|343924225|ref|ZP_08763788.1|  DNA polymerase IV [Gordonia alka...   494    1e-137
gi|226307027|ref|YP_002766987.1|  DNA polymerase IV [Rhodococcus ...   490    2e-136
gi|227548924|ref|ZP_03978973.1|  DNA polymerase IV [Corynebacteri...   471    2e-130
gi|300780843|ref|ZP_07090697.1|  DNA-directed DNA polymerase IV [...   457    2e-126
gi|302524794|ref|ZP_07277136.1|  DNA-directed DNA polymerase [Str...   454    1e-125
gi|311741548|ref|ZP_07715372.1|  DNA-directed DNA polymerase IV [...   451    9e-125
gi|291004643|ref|ZP_06562616.1|  DNA polymerase IV [Saccharopolys...   451    9e-125
gi|300783435|ref|YP_003763726.1|  DNA polymerase IV [Amycolatopsi...   451    1e-124
gi|38234163|ref|NP_939930.1|  DNA polymerase IV [Corynebacterium ...   450    2e-124
gi|296117557|ref|ZP_06836141.1|  ATP-NAD kinase [Corynebacterium ...   446    3e-123
gi|134102671|ref|YP_001108332.1|  DNA polymerase IV [Saccharopoly...   446    4e-123
gi|227833477|ref|YP_002835184.1|  DNA polymerase IV [Corynebacter...   446    5e-123
gi|255325326|ref|ZP_05366432.1|  DNA polymerase IV [Corynebacteri...   446    5e-123
gi|262184465|ref|ZP_06043886.1|  DNA polymerase IV [Corynebacteri...   446    6e-123


>gi|13881213|gb|AAK45855.1| DNA-damage-inducible protein P, putative [Mycobacterium tuberculosis 
CDC1551]
Length=485

 Score =  917 bits (2370),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/463 (100%), Positives = 463/463 (100%), Gaps = 0/463 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  23   VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  82

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  83   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  142

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  143  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  202

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  203  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  262

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  263  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  322

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  323  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  382

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct  383  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  442

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct  443  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  485


>gi|161350072|ref|NP_336041.2| DNA polymerase IV [Mycobacterium tuberculosis CDC1551]
 gi|161352466|ref|NP_216053.2| DNA polymerase IV [Mycobacterium tuberculosis H37Rv]
 gi|161511533|ref|NP_855216.2| DNA polymerase IV [Mycobacterium bovis AF2122/97]
 13 more sequence titles
 Length=468

 Score =  915 bits (2365),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/463 (100%), Positives = 463/463 (100%), Gaps = 0/463 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  66   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  126  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  186  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  246  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  306  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  365

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct  366  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  425

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct  426  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  468


>gi|121637458|ref|YP_977681.1| DNA polymerase IV [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661333|ref|YP_001282856.1| DNA polymerase IV [Mycobacterium tuberculosis H37Ra]
 gi|224989933|ref|YP_002644620.1| DNA polymerase IV [Mycobacterium bovis BCG str. Tokyo 172]
 49 more sequence titles
 Length=463

 Score =  915 bits (2364),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  1    MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463


>gi|253799408|ref|YP_003032409.1| DNA polymerase IV dinX [Mycobacterium tuberculosis KZN 1435]
 gi|254550557|ref|ZP_05141004.1| DNA polymerase IV [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289554671|ref|ZP_06443881.1| DNA polymerase IV dinX [Mycobacterium tuberculosis KZN 605]
 7 more sequence titles
 Length=468

 Score =  912 bits (2358),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  66   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  126  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  186  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  246  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPT DAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  306  MPYPTPDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  365

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct  366  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  425

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct  426  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  468


>gi|148822761|ref|YP_001287515.1| DNA polymerase IV [Mycobacterium tuberculosis F11]
 gi|148721288|gb|ABR05913.1| DNA polymerase IV dinX (pol IV 1) [Mycobacterium tuberculosis 
F11]
Length=463

 Score =  912 bits (2357),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  1    MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPT DAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  301  MPYPTPDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463


>gi|289761700|ref|ZP_06521078.1| DNA polymerase IV dinX (pol IV 1) [Mycobacterium tuberculosis 
GM 1503]
 gi|289709206|gb|EFD73222.1| DNA polymerase IV dinX (pol IV 1) [Mycobacterium tuberculosis 
GM 1503]
Length=463

 Score =  909 bits (2348),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/463 (99%), Positives = 461/463 (99%), Gaps = 0/463 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  1    MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPT DAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  301  MPYPTPDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            VDTGDISNASPLDSLDWP YIGQLSVEGSAGASAPTVDDVGDR
Sbjct  421  VDTGDISNASPLDSLDWPYYIGQLSVEGSAGASAPTVDDVGDR  463


>gi|289750104|ref|ZP_06509482.1| DNA polymerase IV [Mycobacterium tuberculosis T92]
 gi|289690691|gb|EFD58120.1| DNA polymerase IV [Mycobacterium tuberculosis T92]
Length=404

 Score =  748 bits (1930),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/379 (100%), Positives = 379/379 (100%), Gaps = 0/379 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct  23   VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  82

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct  83   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  142

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct  143  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  202

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct  203  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  262

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct  263  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  322

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct  323  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  382

Query  361  YVETPGAVVPAAHDATMWR  379
            YVETPGAVVPAAHDATMWR
Sbjct  383  YVETPGAVVPAAHDATMWR  401


>gi|296164411|ref|ZP_06846986.1| DNA polymerase IV 1 [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900251|gb|EFG79682.1| DNA polymerase IV 1 [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=529

 Score =  711 bits (1836),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/465 (82%), Positives = 405/465 (88%), Gaps = 2/465 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  65   VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  124

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYG+ASRRVFDTVR +VPVVEQLSFDE F EPP LAGA A  VE F
Sbjct  125  LIGVTAVVLPPRGVVYGVASRRVFDTVRAVVPVVEQLSFDEGFGEPPHLAGASAAQVEAF  184

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVV  AEE++LL GLPVRRLW
Sbjct  185  CEDLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVGRAEERSLLGGLPVRRLW  244

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKL+RLGIETIGQLAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  245  GIGPVAEEKLNRLGIETIGQLAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK  304

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFAVDLTT+EQL EAID IAEHAHQRLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  305  QISSESTFAVDLTTLEQLREAIDPIAEHAHQRLLRDGRGARTVTVKLKKSDMSTLTRSAT  364

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+ GAL  VARRLL DP +IGPIRLLGVGFSGLSD+RQESLF D +   ET+  H
Sbjct  365  LPYATTEPGALVAVARRLLLDPREIGPIRLLGVGFSGLSDVRQESLFPDLEFAGETSEQH  424

Query  361  YVETPGAVV--PAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART  418
             VE     +  P A   + WRVGDDV HP+LGHGWVQGAGHGVVTVRFETR SGPG ART
Sbjct  425  PVEAAAEAMFAPVAEAGSPWRVGDDVTHPQLGHGWVQGAGHGVVTVRFETRSSGPGPART  484

Query  419  FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            FP  T +++ A+P+DSLDWPDY+G L    +   SAP  DDV DR
Sbjct  485  FPAGTAELTQANPVDSLDWPDYLGALQALEADAPSAPPGDDVADR  529


>gi|240167929|ref|ZP_04746588.1| DNA polymerase IV [Mycobacterium kansasii ATCC 12478]
Length=465

 Score =  711 bits (1836),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 377/465 (82%), Positives = 408/465 (88%), Gaps = 2/465 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  1    MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRGVVYGIASRRVFDTVR LVPVVEQLSFDEAF EPP L  A AEDV TF
Sbjct  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRSLVPVVEQLSFDEAFGEPPHLGAATAEDVATF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C+ LRRRVR+ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR  EEQ LL GLPVRRLW
Sbjct  121  CDALRRRVREETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRREEEQRLLHGLPVRRLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIET+GQLAAL+D E ANILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct  181  GIGPVAEEKLHRLGIETVGQLAALTDVEVANILGATVGPALHRLARGIDDRPVAERAEAK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA DLTT++QL EAID IAEHA+ RLLRDGRGART+TVKLKK+DM TLTRSAT
Sbjct  241  QISAESTFAADLTTLDQLREAIDPIAEHAYHRLLRDGRGARTVTVKLKKADMGTLTRSAT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA--A  358
            MPY TT+AGAL  VARRLL DP++IGPIRLLGVGFSGLS+++QESLF D DL+ + A  A
Sbjct  301  MPYATTEAGALIAVARRLLLDPIEIGPIRLLGVGFSGLSEVQQESLFPDLDLSPDPAEEA  360

Query  359  AHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART  418
             H   T  A      D+  WR+GDDVAHPELGHGWVQGAGHGVVTVRFETR SGPG ART
Sbjct  361  QHDFPTLRAAQFGGPDSARWRIGDDVAHPELGHGWVQGAGHGVVTVRFETRRSGPGPART  420

Query  419  FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            FP+DTGD++ A+P+DSLDWPDY+ +L  +   G S P VDDVGDR
Sbjct  421  FPIDTGDLAVANPVDSLDWPDYVSRLRADEPIGVSPPAVDDVGDR  465


>gi|254821465|ref|ZP_05226466.1| DNA polymerase IV [Mycobacterium intracellulare ATCC 13950]
Length=466

 Score =  699 bits (1805),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 372/464 (81%), Positives = 406/464 (88%), Gaps = 4/464 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A DVETF
Sbjct  66   LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGASAADVETF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LRRRVRD+TGLIASVGAGSGKQIAKIASGLAKPDGIRVVR  EE++LL GLPVRRLW
Sbjct  126  CEDLRRRVRDQTGLIASVGAGSGKQIAKIASGLAKPDGIRVVRRDEERSLLGGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIET+G+LAALSDAEAANILGATIGPALHRLARG+DDRPV ERAEAK
Sbjct  186  GIGPVAEEKLHRLGIETVGELAALSDAEAANILGATIGPALHRLARGVDDRPVAERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFAVDLT++EQL EAI+ IAEHAH RL+RDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  246  QISSESTFAVDLTSLEQLREAIEPIAEHAHHRLVRDGRGARTVTVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+  AL  VARRLL DP +IGPIRLLGVGFSGLSD+RQESLF D +L Q    + 
Sbjct  306  LPYATTEVAALVGVARRLLLDPREIGPIRLLGVGFSGLSDVRQESLFPDLELPQPQPDSS  365

Query  361  YVETPGAVV-PAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
             VET   V+     +   WRVGDDV H ELGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct  366  SVETATEVMFTKGPEEAGWRVGDDVVHRELGHGWVQGAGHGVVTARFETRTSGPGPARTF  425

Query  420  PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            P D+G+++ A+P+DSLDWPDY+G L  +    ASAP  DDVGDR
Sbjct  426  PADSGELARANPVDSLDWPDYVGDLQTD---AASAPPADDVGDR  466


>gi|183982372|ref|YP_001850663.1| DNA polymerase IV, DinP_1 [Mycobacterium marinum M]
 gi|183175698|gb|ACC40808.1| DNA polymerase IV, DinP_1 [Mycobacterium marinum M]
Length=470

 Score =  696 bits (1796),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/464 (81%), Positives = 408/464 (88%), Gaps = 2/464 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTL GRPVLVGG+GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLMGRPVLVGGMGGRGVVAGASYEARVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRG VYG+ASRRVFDTVRGLVPVVEQLSFDEAF EPPQL GA   +VE F
Sbjct  66   LIGVTAVVLPPRGAVYGVASRRVFDTVRGLVPVVEQLSFDEAFGEPPQLGGAATAEVEQF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVV   EEQ LL GLPVRRLW
Sbjct  126  CEDLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVARQEEQLLLGGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIET+GQLAAL+DAE ANILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct  186  GIGPVAEEKLHRLGIETVGQLAALADAEVANILGATVGPALHRLARGIDDRPVAERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA+DLTT++QL +A+D IAEHAHQRLLRDGRG+RT+TVKLKK+DMSTLTRSAT
Sbjct  246  QISAESTFAIDLTTLDQLRDALDPIAEHAHQRLLRDGRGSRTVTVKLKKADMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA-AA  359
            +PY TTD GAL  +ARRLL DP+QIGPIRLLGVGFSGLS++RQESLF D DL  ET+  A
Sbjct  306  LPYATTDVGALLALARRLLLDPVQIGPIRLLGVGFSGLSEVRQESLFPDLDLAAETSEEA  365

Query  360  HYVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART  418
            H    P    + +     +WR+GDDV H ELGHGWVQGAGHGVVTVRFETRGSGPG ART
Sbjct  366  HQDFHPSHGALSSTPAGAVWRIGDDVTHRELGHGWVQGAGHGVVTVRFETRGSGPGPART  425

Query  419  FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGD  462
            FP++T DI+ A+P+DSLDWPD++GQL VE +A  S P VDD+ D
Sbjct  426  FPIETSDITAANPVDSLDWPDFVGQLRVENAADTSTPAVDDLDD  469


>gi|41407346|ref|NP_960182.1| DNA polymerase IV [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395698|gb|AAS03565.1| DinX [Mycobacterium avium subsp. paratuberculosis K-10]
Length=463

 Score =  694 bits (1790),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 370/464 (80%), Positives = 407/464 (88%), Gaps = 7/464 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A+DVE F
Sbjct  66   LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAQDVEAF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct  126  CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  186  GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  246  QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+A AL  VARRLL DP +IGPIRLLGVGFSGLS++RQESLF D ++    + + 
Sbjct  306  LPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ  365

Query  361  YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
             VET   A+    HDA  WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct  366  SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF  424

Query  420  PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            P D+ ++  A+P+DSLDWPDY     VEG   +SAP  +DVG R
Sbjct  425  PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAEDVGGR  463


>gi|118617186|ref|YP_905518.1| DNA polymerase IV [Mycobacterium ulcerans Agy99]
 gi|118569296|gb|ABL04047.1| DNA polymerase IV, DinP_1 [Mycobacterium ulcerans Agy99]
Length=473

 Score =  692 bits (1787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 373/464 (81%), Positives = 406/464 (88%), Gaps = 2/464 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTL GRPVLVGG+GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  9    VLHLDMDAFFASVEQLTRPTLMGRPVLVGGMGGRGVVAGASYEARVFGARSAMPMHQARR  68

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVVLPPRG VYG+ASRRVFDTVRGLVPVVEQLSFDEAF EPPQL GA   +VE F
Sbjct  69   LIGVTAVVLPPRGAVYGVASRRVFDTVRGLVPVVEQLSFDEAFGEPPQLGGAATAEVEQF  128

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVV   EEQ LL GLPVRRLW
Sbjct  129  CEDLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVARKEEQLLLGGLPVRRLW  188

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIET+GQLAAL+DAE ANILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct  189  GIGPVAEEKLHRLGIETVGQLAALADAEVANILGATVGPALHRLARGIDDRPVAERAEAK  248

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA+DLTT++QL +A+D IAEHAHQRLLRDGRG+RT+TVKLKK+DMSTLTRSAT
Sbjct  249  QISAESTFAIDLTTLDQLRDALDPIAEHAHQRLLRDGRGSRTVTVKLKKADMSTLTRSAT  308

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA-AA  359
            +PY TTD GAL  +ARRLL DP QIGPIRLLGVGFSGLS++RQESLF D DL  ET+  A
Sbjct  309  LPYATTDVGALLALARRLLLDPAQIGPIRLLGVGFSGLSELRQESLFPDLDLAAETSEEA  368

Query  360  HYVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART  418
            H    P    + +     +WR+GDDV H ELGHGWVQGAGHGVVTVRFETR SGPG ART
Sbjct  369  HKDFHPSHGALSSTPAGAVWRIGDDVTHRELGHGWVQGAGHGVVTVRFETRDSGPGPART  428

Query  419  FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGD  462
            FP++T DI+ A+P+DSLDWPD++GQL VE +A  S P VDD+ D
Sbjct  429  FPIETSDITAANPVDSLDWPDFVGQLRVENAADTSTPAVDDLDD  472


>gi|118466313|ref|YP_882415.1| DNA polymerase IV [Mycobacterium avium 104]
 gi|118167600|gb|ABK68497.1| DNA polymerase IV 1 [Mycobacterium avium 104]
Length=458

 Score =  692 bits (1786),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 369/464 (80%), Positives = 407/464 (88%), Gaps = 7/464 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct  1    MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA AEDVE F
Sbjct  61   LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAEDVEAF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct  121  CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  181  GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  241  QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+A AL  VARRLL DP +IGPIRLLGVGFSGLS++RQESLF D ++    + + 
Sbjct  301  LPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ  360

Query  361  YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
             VET   A+    HDA  WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct  361  SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF  419

Query  420  PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            P D+ ++  A+P+DSLDWPDY     VEG   +SAP  ++VG R
Sbjct  420  PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAENVGGR  458


>gi|254775682|ref|ZP_05217198.1| DNA polymerase IV [Mycobacterium avium subsp. avium ATCC 25291]
Length=463

 Score =  691 bits (1782),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 369/464 (80%), Positives = 406/464 (88%), Gaps = 7/464 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A+DVE F
Sbjct  66   LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAQDVEAF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct  126  CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  186  GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVTERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  246  QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+A AL  VARRLL DP +IG IRLLGVGFSGLS++RQESLF D ++    + + 
Sbjct  306  LPYATTEAAALVGVARRLLLDPREIGSIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ  365

Query  361  YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
             VET   A+    HDA  WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct  366  SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF  424

Query  420  PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            P D+ ++  A+P+DSLDWPDY     VEG   +SAP  +DVG R
Sbjct  425  PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAEDVGGR  463


>gi|336457942|gb|EGO36932.1| nucleotidyltransferase/DNA polymerase involved in DNA repair 
[Mycobacterium avium subsp. paratuberculosis S397]
Length=457

 Score =  686 bits (1769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 368/464 (80%), Positives = 406/464 (88%), Gaps = 8/464 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct  1    MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A+DVE F
Sbjct  61   LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAQDVEAF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL G PVRRLW
Sbjct  121  CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGG-PVRRLW  179

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  180  GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK  239

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  240  QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT  299

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+A AL  VARRLL DP +IGPIRLLGVGFSGLS++RQESLF D ++    + + 
Sbjct  300  LPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ  359

Query  361  YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
             VET   A+    HDA  WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct  360  SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF  418

Query  420  PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            P D+ ++  A+P+DSLDWPDY     VEG   +SAP  +DVG R
Sbjct  419  PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAEDVGGR  457


>gi|342860881|ref|ZP_08717531.1| DNA polymerase IV [Mycobacterium colombiense CECT 3035]
 gi|342131905|gb|EGT85162.1| DNA polymerase IV [Mycobacterium colombiense CECT 3035]
Length=472

 Score =  679 bits (1751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 366/467 (79%), Positives = 401/467 (86%), Gaps = 4/467 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGG+GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGVGGRGVVAGASYEARVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A +VE F
Sbjct  66   LVGVSAVVLPPRGVVYGLASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGASAAEVEAF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LRRRVRD+TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct  126  CEDLRRRVRDDTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERLLLGGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEE+LHRLGIETIG+LAAL++ EAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  186  GIGPVAEERLHRLGIETIGELAALTEPEAANILGATIGPALHRLARGIDDRPVAERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+ESTFA DLT++EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct  246  QISSESTFAADLTSLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+  AL  +ARRLL DP +IGPIRLLGVGFSGLSD+RQESLF D +L    + + 
Sbjct  306  LPYATTEVAALVGMARRLLLDPREIGPIRLLGVGFSGLSDVRQESLFPDLELAAPQSDSS  365

Query  361  YVETPGAVV----PAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSA  416
             VET    +    P   +A  WRVGDDVAH ELGHGWVQGAGHGVVT RFETR +GPG A
Sbjct  366  SVETATEAMYGPGPQPAEAAGWRVGDDVAHRELGHGWVQGAGHGVVTARFETRSTGPGPA  425

Query  417  RTFPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR  463
            RTFP D GD+  A+P+DSLDWPDY G+L        SAP  DDVGDR
Sbjct  426  RTFPADGGDLVRANPIDSLDWPDYAGELQASEVRALSAPPGDDVGDR  472


>gi|161407222|ref|YP_640258.2| DNA polymerase IV [Mycobacterium sp. MCS]
Length=454

 Score =  636 bits (1641),  Expect = 2e-180, Method: Compositional matrix adjust.
 Identities = 339/444 (77%), Positives = 380/444 (86%), Gaps = 1/444 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVHGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRGVVYG+ASRRVFDTVR LVPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct  66   LVGAPAVVLPPRGVVYGLASRRVFDTVRTLVPVLEQLSFDEAFGEPQELAGASAADVEEF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR RV +ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR A+E+ LL  L VR+LW
Sbjct  126  CELLRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE+KLHRLGIETIGQLAALS+AE A+ILGAT+GPALHRLARGID+RPV ERAEAK
Sbjct  186  GIGPVAEDKLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDERPVAERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF  DL T++Q+ EAI  IA+HAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct  246  QISAESTFPADLITLDQVREAIGPIADHAHRRLAKDGRGARTVTVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P  TTDA  L   ARRLL DP++IGPIRL+GVGFSGLS++RQESLF D +L ++  A  
Sbjct  306  LPSATTDAATLSATARRLLVDPVEIGPIRLVGVGFSGLSEVRQESLFPDLELVEDEPATR  365

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
                P +V  AA     WRVGDDVAHPELGHGW+QGAGHGV+T+RFETR +GPG A+TFP
Sbjct  366  PA-VPMSVSEAAAVPPAWRVGDDVAHPELGHGWIQGAGHGVMTIRFETRSTGPGPAKTFP  424

Query  421  VDTGDISNASPLDSLDWPDYIGQL  444
                D+  A+P+DSLDW DY+  L
Sbjct  425  DTVPDVVRANPVDSLDWADYVDAL  448


>gi|119869187|ref|YP_939139.1| DNA polymerase IV [Mycobacterium sp. KMS]
 gi|108770480|gb|ABG09202.1| DNA-directed DNA polymerase [Mycobacterium sp. MCS]
 gi|119695276|gb|ABL92349.1| DNA-directed DNA polymerase [Mycobacterium sp. KMS]
Length=452

 Score =  636 bits (1641),  Expect = 2e-180, Method: Compositional matrix adjust.
 Identities = 339/444 (77%), Positives = 380/444 (86%), Gaps = 1/444 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  4    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVHGARSAMPMHQARR  63

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRGVVYG+ASRRVFDTVR LVPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct  64   LVGAPAVVLPPRGVVYGLASRRVFDTVRTLVPVLEQLSFDEAFGEPQELAGASAADVEEF  123

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR RV +ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR A+E+ LL  L VR+LW
Sbjct  124  CELLRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLW  183

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE+KLHRLGIETIGQLAALS+AE A+ILGAT+GPALHRLARGID+RPV ERAEAK
Sbjct  184  GIGPVAEDKLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDERPVAERAEAK  243

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF  DL T++Q+ EAI  IA+HAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct  244  QISAESTFPADLITLDQVREAIGPIADHAHRRLAKDGRGARTVTVKLKKSDMSTLTRSAT  303

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P  TTDA  L   ARRLL DP++IGPIRL+GVGFSGLS++RQESLF D +L ++  A  
Sbjct  304  LPSATTDAATLSATARRLLVDPVEIGPIRLVGVGFSGLSEVRQESLFPDLELVEDEPATR  363

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
                P +V  AA     WRVGDDVAHPELGHGW+QGAGHGV+T+RFETR +GPG A+TFP
Sbjct  364  PA-VPMSVSEAAAVPPAWRVGDDVAHPELGHGWIQGAGHGVMTIRFETRSTGPGPAKTFP  422

Query  421  VDTGDISNASPLDSLDWPDYIGQL  444
                D+  A+P+DSLDW DY+  L
Sbjct  423  DTVPDVVRANPVDSLDWADYVDAL  446


>gi|126435694|ref|YP_001071385.1| DNA polymerase IV [Mycobacterium sp. JLS]
 gi|126235494|gb|ABN98894.1| DNA-directed DNA polymerase [Mycobacterium sp. JLS]
Length=452

 Score =  636 bits (1640),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 339/444 (77%), Positives = 379/444 (86%), Gaps = 1/444 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  4    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVHGARSAMPMHQARR  63

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRGVVYG+ASRRVFDTVR LVPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct  64   LVGAPAVVLPPRGVVYGLASRRVFDTVRTLVPVLEQLSFDEAFGEPQELAGASAADVEEF  123

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR RV +ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR A+E+ LL  L VR+LW
Sbjct  124  CELLRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLW  183

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE++LHRLGIETIGQLAALS+AE A+ILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct  184  GIGPVAEDRLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDDRPVAERAEAK  243

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF  DL T++Q+ EAI  IA+HAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct  244  QISAESTFPADLITLDQVREAIGPIADHAHRRLAKDGRGARTVTVKLKKSDMSTLTRSAT  303

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P  TTDA  L   ARRLL DP +IGPIRL+GVGFSGLS++RQESLF D +L ++  A  
Sbjct  304  LPSATTDAATLSATARRLLVDPAEIGPIRLVGVGFSGLSEVRQESLFPDLELVEDELATR  363

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
                P +V  AA     WRVGDDVAHPELGHGW+QGAGHGV+T+RFETR +GPG A+TFP
Sbjct  364  PA-VPMSVSEAAAVPPAWRVGDDVAHPELGHGWIQGAGHGVMTIRFETRSTGPGPAKTFP  422

Query  421  VDTGDISNASPLDSLDWPDYIGQL  444
                D+  A+P+DSLDW DY+  L
Sbjct  423  DTVPDVVRANPVDSLDWADYVDAL  446


>gi|118473834|ref|YP_887486.1| DNA polymerase IV [Mycobacterium smegmatis str. MC2 155]
 gi|118175121|gb|ABK76017.1| DNA polymerase IV 1 [Mycobacterium smegmatis str. MC2 155]
Length=463

 Score =  633 bits (1633),  Expect = 2e-179, Method: Compositional matrix adjust.
 Identities = 340/446 (77%), Positives = 377/446 (85%), Gaps = 3/446 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR YGARSAMPMHQARR
Sbjct  14   VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARRYGARSAMPMHQARR  73

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG VYG+ASRR  DTVR +VPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct  74   LVGAPAVVLPPRGAVYGVASRRALDTVRSVVPVLEQLSFDEAFGEPSELAGAEAADVEAF  133

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLR +V + TGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR  EE  LL GLPVR+LW
Sbjct  134  CERLRAKVLEHTGLVASVGAGSGKQIAKIASGLAKPDGIRVVRREEEAVLLHGLPVRKLW  193

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE++LHR+GIETIG  AAL++AEAAN+LG+TIGPALHRLARGIDDRPV ERAEAK
Sbjct  194  GIGPVAEDRLHRIGIETIGAFAALTEAEAANVLGSTIGPALHRLARGIDDRPVAERAEAK  253

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF  DLTT+ QL +AI  I EHAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct  254  QISAESTFPEDLTTLAQLQDAIVPIGEHAHRRLEKDGRGARTVTVKLKKSDMSTLTRSAT  313

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA-AA  359
            + Y TT+A  L   ARRLL DP++IGPIRL+GVGFSGLSDIRQESLF D +  +E   AA
Sbjct  314  LAYATTEASTLIGTARRLLLDPVEIGPIRLVGVGFSGLSDIRQESLFPDLEQPEEFPDAA  373

Query  360  HYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
              VE+       +   T WRVGDDVAH ELGHGWVQGAGHGV+TVRFETR SGPG ARTF
Sbjct  374  PQVES--VQTGPSSPTTQWRVGDDVAHTELGHGWVQGAGHGVMTVRFETRASGPGPARTF  431

Query  420  PVDTGDISNASPLDSLDWPDYIGQLS  445
            P D+ +IS A P+DSLDW +Y+  L+
Sbjct  432  PEDSPEISRADPVDSLDWAEYLSSLA  457


>gi|333990828|ref|YP_004523442.1| DNA polymerase IV [Mycobacterium sp. JDM601]
 gi|333486796|gb|AEF36188.1| DNA polymerase IV DinP_1 [Mycobacterium sp. JDM601]
Length=451

 Score =  618 bits (1594),  Expect = 7e-175, Method: Compositional matrix adjust.
 Identities = 342/440 (78%), Positives = 374/440 (85%), Gaps = 2/440 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG VYG+ASRRVF+TVR ++PVVEQLSFDEAF EP +L+GA +EDV  F
Sbjct  66   LVGAPAVVLPPRGAVYGVASRRVFETVRAVIPVVEQLSFDEAFGEPAELSGAGSEDVHRF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CERLRRRVRDETGL+ASVGAGSGKQIAKIAS LAKPDG+RVV  AEE+ LL GLPVRRLW
Sbjct  126  CERLRRRVRDETGLVASVGAGSGKQIAKIASDLAKPDGVRVVTRAEERLLLDGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGI TIG  AAL+D+E A+ILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct  186  GIGPVAEEKLHRLGITTIGAFAALTDSEVADILGATIGPALHRLARGIDDRPVAERAEAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA DLTT+EQL   +  I EHA++RLLRDGRGART+TVKLKK+DMS LTRSAT
Sbjct  246  QISAESTFATDLTTLEQLRAEVGPIGEHAYRRLLRDGRGARTVTVKLKKADMSVLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TTDA AL   A RLL DP QIGPIRLLGVGFSGL+D+RQESLF + + ++  AAA 
Sbjct  306  LPYATTDAAALTAAAGRLLLDPAQIGPIRLLGVGFSGLTDVRQESLFPELEFSE--AAAD  363

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
              ETP     +   A  WRVGDDV H ELGHGWVQG+GHGVVTVRFETR SGPG  RTF 
Sbjct  364  SPETPALQPVSPSIAASWRVGDDVTHVELGHGWVQGSGHGVVTVRFETRSSGPGPVRTFA  423

Query  421  VDTGDISNASPLDSLDWPDY  440
            VD   I+ A P+ SLDWPDY
Sbjct  424  VDEPGITRADPVASLDWPDY  443


>gi|145224226|ref|YP_001134904.1| DNA polymerase IV [Mycobacterium gilvum PYR-GCK]
 gi|315444560|ref|YP_004077439.1| nucleotidyltransferase/DNA polymerase involved in DNA repair 
[Mycobacterium sp. Spyr1]
 gi|145216712|gb|ABP46116.1| DNA-directed DNA polymerase [Mycobacterium gilvum PYR-GCK]
 gi|315262863|gb|ADT99604.1| nucleotidyltransferase/DNA polymerase involved in DNA repair 
[Mycobacterium sp. Spyr1]
Length=455

 Score =  608 bits (1567),  Expect = 9e-172, Method: Compositional matrix adjust.
 Identities = 327/446 (74%), Positives = 367/446 (83%), Gaps = 1/446 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYE+R +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYESRVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRGVVYG+ASRRVF+TVR  VPV+EQLSFDEAF EP  LAGA A +V  F
Sbjct  66   LVGAGAVVLPPRGVVYGLASRRVFETVRARVPVLEQLSFDEAFGEPVALAGASAGEVADF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C+ LR  V   TGL+ASVGAGSGKQIAKIASGLAKPDG+ V+ HA+E+ALL  LPVRRLW
Sbjct  126  CQALRAEVTAVTGLVASVGAGSGKQIAKIASGLAKPDGVTVIAHADERALLDDLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKLHRLGI+TIG  AAL+D E ANILG T+GPALHRLARGIDDRPV E A AK
Sbjct  186  GIGPVAEEKLHRLGIDTIGGFAALADTEVANILGPTVGPALHRLARGIDDRPVTENAPAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF  DLTT+ QL +A   I EHAH+RLL+DGRGART+TVKLKKSDMSTLTRSAT
Sbjct  246  QISAESTFPEDLTTLRQLRDAAAPIGEHAHRRLLKDGRGARTVTVKLKKSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD-SDLTQETAAA  359
            +PY TTDAG L   A RLL DP+ IGPIRL+G+GFSGLSDI+QESLF +    T E   +
Sbjct  306  LPYATTDAGTLIATAHRLLLDPVDIGPIRLVGIGFSGLSDIQQESLFPELESATTEELTS  365

Query  360  HYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
                +      A+H    WRVGDDV+H E GHGWVQGAGHGV+TVRFETRG+GPG ARTF
Sbjct  366  LGPLSSPLSSAASHVEPAWRVGDDVSHTEFGHGWVQGAGHGVMTVRFETRGTGPGPARTF  425

Query  420  PVDTGDISNASPLDSLDWPDYIGQLS  445
              D   +S A+P+DSLDWPDY+ +++
Sbjct  426  REDDPALSRANPVDSLDWPDYVAEMT  451


>gi|120403755|ref|YP_953584.1| DNA polymerase IV [Mycobacterium vanbaalenii PYR-1]
 gi|119956573|gb|ABM13578.1| DNA-directed DNA polymerase [Mycobacterium vanbaalenii PYR-1]
Length=453

 Score =  598 bits (1542),  Expect = 6e-169, Method: Compositional matrix adjust.
 Identities = 322/445 (73%), Positives = 370/445 (84%), Gaps = 3/445 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGG+GGRGVVAGASYE+R +GARSAMPM QA+R
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGVGGRGVVAGASYESRVFGARSAMPMLQAKR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRGVVYG ASRRVF+TVR LVPV+EQLSFDEAF EP  LAGA   +VE F
Sbjct  66   LVGAAAVVLPPRGVVYGTASRRVFETVRTLVPVLEQLSFDEAFGEPTDLAGAAEPEVEAF  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C  LR RV   TGL+ASVGAGSGKQ+AKIASGLAKPDGIRV+   EE  LL+GLPVRRLW
Sbjct  126  CAELRSRVLAVTGLVASVGAGSGKQVAKIASGLAKPDGIRVIDRDEEATLLAGLPVRRLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE++LHRLGIETIG LAALS+AE ANILGAT+GPALHRLARG+DDRPV E A AK
Sbjct  186  GIGPVAEDRLHRLGIETIGALAALSEAEVANILGATVGPALHRLARGVDDRPVAENAPAK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA DLTT+ QL EAI  I +HAH+RL +DGRGART+TVKLK+SDMSTLTRSAT
Sbjct  246  QISAESTFAQDLTTIAQLREAIGPIGDHAHKRLTKDGRGARTVTVKLKRSDMSTLTRSAT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+A  L   ARRLL DP++IGP+RL+GVGFSGLS ++QE LF D +  ++T+   
Sbjct  306  LPYATTEATTLIGTARRLLLDPVEIGPVRLVGVGFSGLSQVQQEPLFPDLETVEQTSDD-  364

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
                P  +   A  A  WRVGDDVAH + GHGWVQGAGHGV+TVRFETRG+GPG ARTF 
Sbjct  365  --AAPVTLADVAATAPAWRVGDDVAHTDHGHGWVQGAGHGVMTVRFETRGTGPGPARTFR  422

Query  421  VDTGDISNASPLDSLDWPDYIGQLS  445
             D   ++ A+P+DSLDWPD++ +++
Sbjct  423  ADDPALTRANPVDSLDWPDFVEEMA  447


>gi|169629787|ref|YP_001703436.1| DNA polymerase IV [Mycobacterium abscessus ATCC 19977]
 gi|169241754|emb|CAM62782.1| DNA polymerase IV family [Mycobacterium abscessus]
Length=459

 Score =  576 bits (1485),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 311/459 (68%), Positives = 356/459 (78%), Gaps = 15/459 (3%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGG GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  8    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGTGGRGVVAGASYEARVFGARSAMPMHQARR  67

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G+ AVVLPPRG VYG+ASRRVF+TVR ++P++EQLSFDEAF EP +L GA    V  +
Sbjct  68   LVGINAVVLPPRGSVYGVASRRVFETVRSMIPILEQLSFDEAFGEPSELFGATTSAVADY  127

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
               LR RV  ETGL ASVGAGSGKQIAKIASGLAKPDG+R++   EE+ LL  LPVR+LW
Sbjct  128  IHELRSRVLGETGLTASVGAGSGKQIAKIASGLAKPDGVRIIAPEEERTLLDELPVRKLW  187

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEE+L+RLGI TIGQ AAL  +EAA++LG TIGPALH+LARG+DDRPV ERAE K
Sbjct  188  GIGPVAEERLNRLGINTIGQFAALQTSEAASVLGGTIGPALHQLARGVDDRPVAERAETK  247

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF  DLTT++QL +AI+ I  HAH+RL++ GRG RT+TVKL++SDMS LTRSAT
Sbjct  248  QISAESTFPDDLTTLDQLRQAIEPIGVHAHRRLIKHGRGVRTVTVKLRRSDMSILTRSAT  307

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TT+   L + ARRLL DP++IGPIRL+GVGFSG SD++Q SLF D D  Q    A 
Sbjct  308  LPYATTERAVLMSAARRLLLDPVEIGPIRLVGVGFSGFSDVQQTSLFPDLD--QAEPVAE  365

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
              E P    P  H    W VGDDV H E GHGW+QG GHGV+TVRFETR SGPG ARTF 
Sbjct  366  SDEVPSTAEP-THSTAGWGVGDDVDHAEFGHGWIQGTGHGVMTVRFETRSSGPGIARTFA  424

Query  421  VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDD  459
            VD   I+ A P+ SLDWP            G SA  VDD
Sbjct  425  VDDPGIARADPVASLDWP------------GESAEPVDD  451


>gi|333920349|ref|YP_004493930.1| DNA polymerase IV 1 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333482570|gb|AEF41130.1| DNA polymerase IV 1 [Amycolicicoccus subflavus DQS3-9A1]
Length=439

 Score =  537 bits (1383),  Expect = 2e-150, Method: Compositional matrix adjust.
 Identities = 281/440 (64%), Positives = 336/440 (77%), Gaps = 3/440 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFA+VEQLTRPTLRGRPVLVGG G RGVVAGASYEAR +GARSAMPMH ARR
Sbjct  1    MLHLDMDAFFAAVEQLTRPTLRGRPVLVGGTGSRGVVAGASYEARPFGARSAMPMHMARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIGVTAVV+PPRGVVY  AS+RVF  VR ++PV+EQLS DEAF EP QLAGA A  VE F
Sbjct  61   LIGVTAVVVPPRGVVYRAASKRVFAVVRDMIPVIEQLSLDEAFGEPAQLAGATAPVVEEF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C  LR RV   TGL ASVGAGSGKQ+AKIASGLAKP G R+V   +++ALL+ LPVR+LW
Sbjct  121  CTELRARVFAVTGLDASVGAGSGKQVAKIASGLAKPRGQRIVSRNDQKALLAPLPVRKLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE++L  +G+ETIG LA LS +EA  +LG ++GPAL  LA+GIDDRPV E A AK
Sbjct  181  GIGPVAEQRLRSMGVETIGDLARLSASEANALLG-SMGPALRALAQGIDDRPVKEGAAAK  239

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+TF  DL +  ++  A+ ++ E AH+RL  DGRGART+TVKL+K+DMS LTRSAT
Sbjct  240  QVSAETTFPRDLMSKPEVRSAVQTVGESAHRRLASDGRGARTVTVKLRKADMSILTRSAT  299

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P+ T    AL   A++L  DP++IGPIRL+GV +SGLS  +QE LF +   T       
Sbjct  300  LPFATASRDALIGAAQKLAMDPVEIGPIRLVGVSYSGLSSAQQEVLFPEIG-TTANEMDQ  358

Query  361  YVETPGAVVPA-AHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
              ETP A   A A +   +  G DV HP+ GHGWVQG+GHGVVTVRFETR SGPG  +TF
Sbjct  359  VTETPHASSDAPATEGDQFPPGADVHHPKFGHGWVQGSGHGVVTVRFETRTSGPGPVKTF  418

Query  420  PVDTGDISNASPLDSLDWPD  439
            P+   D+++A PL SLDWPD
Sbjct  419  PMPAEDLTHADPLVSLDWPD  438


>gi|161598445|ref|YP_117989.2| DNA polymerase IV [Nocardia farcinica IFM 10152]
Length=455

 Score =  525 bits (1351),  Expect = 8e-147, Method: Compositional matrix adjust.
 Identities = 285/438 (66%), Positives = 336/438 (77%), Gaps = 3/438 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFASVEQLTRPTLRGRPVLVGG G RGVVAGASYEAR YGARSAMPMHQA+R
Sbjct  17   VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTGARGVVAGASYEARVYGARSAMPMHQAKR  76

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVV+PPRG VY   S RVF+ +R  +PV+E LSFDEAF EP +LAGA    V  F
Sbjct  77   LVGVSAVVVPPRGAVYAEMSGRVFEALRSRIPVLETLSFDEAFGEPAELAGASVARVHEF  136

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C  LR  VR+ TGL+ASVGAG+GKQ+AKIASGLAKPDGIRVV  AE+Q LL+ LPVR LW
Sbjct  137  CAELRALVRERTGLVASVGAGTGKQLAKIASGLAKPDGIRVVSPAEQQRLLAALPVRTLW  196

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE +L  LGIET+G  AAL ++EA ++LG +IG ALHRLARGIDDRPV ERAEAK
Sbjct  197  GIGPVAEGRLRTLGIETVGAFAALPESEAVSLLGGSIGAALHRLARGIDDRPVTERAEAK  256

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAE+T+  D+ TM  L +AID++A  AH+RL  DGR ART+ +KLK+SDMS +TRS+T
Sbjct  257  QISAENTYETDIVTMAALRQAIDAMAAAAHRRLGNDGRAARTVVLKLKRSDMSIVTRSST  316

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD---LTQETA  357
            +PY TTD  AL   A+R   DP+++GPIRL+GVG++GLS +RQESLF + D   + ++ A
Sbjct  317  LPYATTDLAALTAAAQRSAIDPVELGPIRLVGVGYAGLSAVRQESLFPELDRAPVDEDAA  376

Query  358  AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR  417
                     A V       +W  G DVAHPE GHGWVQGAGHGVVTVRFET  +GPG AR
Sbjct  377  VEPAEPAAPAPVADPAAVRIWYPGMDVAHPEYGHGWVQGAGHGVVTVRFETSSTGPGPAR  436

Query  418  TFPVDTGDISNASPLDSL  435
            TF  D   +S A PL SL
Sbjct  437  TFSADDISLSRADPLGSL  454


>gi|54015255|dbj|BAD56625.1| putative DNA polymerase IV family protein [Nocardia farcinica 
IFM 10152]
Length=463

 Score =  524 bits (1350),  Expect = 1e-146, Method: Compositional matrix adjust.
 Identities = 285/438 (66%), Positives = 336/438 (77%), Gaps = 3/438 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFASVEQLTRPTLRGRPVLVGG G RGVVAGASYEAR YGARSAMPMHQA+R
Sbjct  25   VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTGARGVVAGASYEARVYGARSAMPMHQAKR  84

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+GV+AVV+PPRG VY   S RVF+ +R  +PV+E LSFDEAF EP +LAGA    V  F
Sbjct  85   LVGVSAVVVPPRGAVYAEMSGRVFEALRSRIPVLETLSFDEAFGEPAELAGASVARVHEF  144

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C  LR  VR+ TGL+ASVGAG+GKQ+AKIASGLAKPDGIRVV  AE+Q LL+ LPVR LW
Sbjct  145  CAELRALVRERTGLVASVGAGTGKQLAKIASGLAKPDGIRVVSPAEQQRLLAALPVRTLW  204

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE +L  LGIET+G  AAL ++EA ++LG +IG ALHRLARGIDDRPV ERAEAK
Sbjct  205  GIGPVAEGRLRTLGIETVGAFAALPESEAVSLLGGSIGAALHRLARGIDDRPVTERAEAK  264

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAE+T+  D+ TM  L +AID++A  AH+RL  DGR ART+ +KLK+SDMS +TRS+T
Sbjct  265  QISAENTYETDIVTMAALRQAIDAMAAAAHRRLGNDGRAARTVVLKLKRSDMSIVTRSST  324

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD---LTQETA  357
            +PY TTD  AL   A+R   DP+++GPIRL+GVG++GLS +RQESLF + D   + ++ A
Sbjct  325  LPYATTDLAALTAAAQRSAIDPVELGPIRLVGVGYAGLSAVRQESLFPELDRAPVDEDAA  384

Query  358  AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR  417
                     A V       +W  G DVAHPE GHGWVQGAGHGVVTVRFET  +GPG AR
Sbjct  385  VEPAEPAAPAPVADPAAVRIWYPGMDVAHPEYGHGWVQGAGHGVVTVRFETSSTGPGPAR  444

Query  418  TFPVDTGDISNASPLDSL  435
            TF  D   +S A PL SL
Sbjct  445  TFSADDISLSRADPLGSL  462


>gi|296140331|ref|YP_003647574.1| DNA-directed DNA polymerase [Tsukamurella paurometabola DSM 20162]
 gi|296028465|gb|ADG79235.1| DNA-directed DNA polymerase [Tsukamurella paurometabola DSM 20162]
Length=466

 Score =  522 bits (1345),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 291/443 (66%), Positives = 330/443 (75%), Gaps = 8/443 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH DMDAFFAS EQLTRPTLRGRPVLVGGLGGRGVVAG SYEAR YGARSAMPMHQARR
Sbjct  17   VLHFDMDAFFASCEQLTRPTLRGRPVLVGGLGGRGVVAGCSYEARVYGARSAMPMHQARR  76

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG +YG  SRRVF TVR L+PVVE LSFDEAF EP +LAGA + +V  F
Sbjct  77   LVGAPAVVLPPRGALYGTVSRRVFATVRELIPVVETLSFDEAFGEPAELAGASSAEVVAF  136

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             E LR R+R  TGLIASVGAG+GKQ AKIASGLAKPDG+ V+  A ++ +L  LPVR+LW
Sbjct  137  AEELRARIRAATGLIASVGAGAGKQAAKIASGLAKPDGVSVIPPAAQETVLYPLPVRKLW  196

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVA E+L RLGIETIGQ AA+S+ E  ++LG T+GPALHRLARG DDRP+  R  AK
Sbjct  197  GIGPVAGERLSRLGIETIGQFAAMSEVEVVSVLGVTLGPALHRLARGQDDRPIETRTGAK  256

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
             ISAE T  VD+TTM  L   ID  AEHA +RL +DGRGART+ +KLK+SDMS LTRSAT
Sbjct  257  SISAEHTLEVDVTTMNALRREIDRSAEHAVRRLRKDGRGARTVVLKLKRSDMSILTRSAT  316

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF-----ADSDLTQE  355
            +P  TTDA  L   A+RL  DP++IG +RL+GVGFSGLS + Q +LF     A       
Sbjct  317  LPSATTDAAVLTATAQRLALDPVEIGGLRLVGVGFSGLSSVEQFTLFGDEAPAAEAAPVV  376

Query  356  TAAAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGS  415
               A  VET      AA     WR G DV HPE GHGWVQGAGHGV++VRFETR SGPG 
Sbjct  377  ADGADVVETTD---DAAEPVVGWRTGMDVRHPEFGHGWVQGAGHGVLSVRFETRESGPGR  433

Query  416  ARTFPVDTGDISNASPLDSLDWP  438
             R+F  D  D+  A PLDSLDWP
Sbjct  434  MRSFRADDPDLREADPLDSLDWP  456


>gi|226360219|ref|YP_002777997.1| DNA polymerase IV [Rhodococcus opacus B4]
 gi|226238704|dbj|BAH49052.1| DNA polymerase IV [Rhodococcus opacus B4]
Length=449

 Score =  511 bits (1317),  Expect = 7e-143, Method: Compositional matrix adjust.
 Identities = 283/443 (64%), Positives = 336/443 (76%), Gaps = 8/443 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG +YG+ S+ VFD +RG +PV+EQLS DEAF EP +LAGA A  V+ +
Sbjct  66   LVGPGAVVLPPRGRLYGMLSKSVFDALRGPMPVLEQLSMDEAFGEPTELAGADAAAVQRY  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR  V +ETGL+AS+GAGSGKQ+AKIASGLAKPDGI V+   E+ A+L  LPVR+LW
Sbjct  126  CEGLRALVLEETGLVASIGAGSGKQVAKIASGLAKPDGITVISPDEQHAVLDELPVRKLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKL RLGIETIG  A   ++E A+ILG TIGP LHRLA+G+D+RPV ERAE+K
Sbjct  186  GIGPVAEEKLKRLGIETIGGFARTPESEVASILGTTIGPGLHRLAQGVDNRPVAERAESK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+TFA D+ TM +L  A+++ A  A  RL +DGR ART+ +KLKK+DMS +TRS T
Sbjct  246  QVSAETTFATDIVTMAELRGAVEASAASAFVRLQKDGRAARTVVLKLKKADMSIVTRSVT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDL----TQET  356
            +PY T D   L   A+R + DP+++GP+RL+GVGF+GLS +RQ SLF + DL     QE+
Sbjct  306  LPYATLDRQILVAAAQRQVIDPIELGPVRLVGVGFAGLSTVRQGSLFPELDLDVPGYQES  365

Query  357  AAAHYVETPGAVVPAAHDA----TMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSG  412
                     G  VP    A    T W  G DV HP+ GHGWVQGAGHGVVTVRFETR +G
Sbjct  366  KITEAGGDDGLAVPVPAPARAIDTRWHPGLDVTHPDFGHGWVQGAGHGVVTVRFETRTTG  425

Query  413  PGSARTFPVDTGDISNASPLDSL  435
            PG ARTF  D G +  A    SL
Sbjct  426  PGKARTFKEDDGQLDTADVEGSL  448


>gi|111018090|ref|YP_701062.1| DNA polymerase IV [Rhodococcus jostii RHA1]
 gi|110817620|gb|ABG92904.1| DNA polymerase IV [Rhodococcus jostii RHA1]
Length=449

 Score =  511 bits (1316),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 284/444 (64%), Positives = 337/444 (76%), Gaps = 8/444 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  6    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  65

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG +YG+ S+ VFD +RG +PV+EQLS DEAF EP +LAGA A  V+ +
Sbjct  66   LVGPGAVVLPPRGRLYGMLSKSVFDALRGPMPVLEQLSMDEAFGEPIELAGADAGTVQRY  125

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR  V +ETGL+AS+GAGSGKQ+AKIASGLAKP+GI V+   E+ A+L  LPVR+LW
Sbjct  126  CEGLRALVLEETGLVASIGAGSGKQVAKIASGLAKPNGITVIPPDEQHAVLDELPVRKLW  185

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKL RLGIETIG  A   ++E A+ILG T+GP LHRLA+GID+RPV ERAE+K
Sbjct  186  GIGPVAEEKLKRLGIETIGGFARTPESEVASILGTTVGPGLHRLAQGIDNRPVAERAESK  245

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+TFA D+ TM +L  A++S A  A  RL +DGR ART+ +KLKK+DMS +TRS T
Sbjct  246  QVSAETTFATDIVTMAELRGAVESSAASAFVRLQKDGRAARTVVLKLKKADMSVVTRSVT  305

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY T D   L   A+R + DPL++GP+RL+GVGF+GLS +RQ SLF + DL        
Sbjct  306  LPYATLDRQILVAAAQRQVIDPLELGPVRLVGVGFAGLSTVRQGSLFPELDLDVPGYQES  365

Query  361  YVETPG------AVVPAAHDA--TMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSG  412
             +   G      A VPA   A  T W  G DV HP+ GHGWVQGAGHGVVTVRFETR +G
Sbjct  366  KITVAGADDGLSAPVPAPARAIDTRWHPGLDVTHPDFGHGWVQGAGHGVVTVRFETRTTG  425

Query  413  PGSARTFPVDTGDISNASPLDSLD  436
            PG ARTF VD   +  A    SL+
Sbjct  426  PGKARTFKVDDAQLERADVEGSLE  449


>gi|262202895|ref|YP_003274103.1| DNA-directed DNA polymerase [Gordonia bronchialis DSM 43247]
 gi|262086242|gb|ACY22210.1| DNA-directed DNA polymerase [Gordonia bronchialis DSM 43247]
Length=449

 Score =  506 bits (1304),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 287/441 (66%), Positives = 336/441 (77%), Gaps = 4/441 (0%)

Query  2    LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARRL  61
            +HLDMDAFFASVEQLTRPTLRGRPVLVGG GGRGVVAGASYEARA+GA SAMPMHQARRL
Sbjct  1    MHLDMDAFFASVEQLTRPTLRGRPVLVGGTGGRGVVAGASYEARAFGAGSAMPMHQARRL  60

Query  62   IGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETFC  121
            +G TAVV+PPRG VY + S R+F  VR  VPV+E LSFDEAFAEP +LAGA A     F 
Sbjct  61   VGPTAVVVPPRGSVYRVVSSRIFALVRRAVPVIEMLSFDEAFAEPAELAGAPASAAADFA  120

Query  122  ERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLWG  181
            ER+R  +RDE GL ASVG GSGKQIAKIASG AKPDG+ V+  + E A L  LPVR+LWG
Sbjct  121  ERIRGIIRDEVGLAASVGFGSGKQIAKIASGQAKPDGVMVIPPSAELAFLHELPVRKLWG  180

Query  182  IGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAKQ  241
            IGPV+ +KL RLGI+TIG LAA++  E +++LGAT+GPALHRLA+GID+RPV ERA AKQ
Sbjct  181  IGPVSGDKLSRLGIDTIGDLAAMAPVEVSSVLGATVGPALHRLAQGIDERPVTERASAKQ  240

Query  242  ISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSATM  301
            ISAESTFA D+  + +L +AID  A  AH+RLL DGRGART+ VKLK+SDMS LTRSAT+
Sbjct  241  ISAESTFAADIVDLPELRQAIDKAAADAHRRLLADGRGARTVVVKLKRSDMSVLTRSATL  300

Query  302  PYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD--SDLTQETAAA  359
            P  TTD   L   A+RL  DP  IGPIRL+GVG+SGLS ++Q +LF D   D   ++A  
Sbjct  301  PTATTDLDELDRAAQRLALDPRSIGPIRLVGVGYSGLSSVQQYALFGDPVDDAIAQSAVV  360

Query  360  HYVETPGAVVPAAHDATMWRV--GDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR  417
               +T       A D +  R+  G DV HPE GHGWVQG+GHGVVTVRFETR +GPG  R
Sbjct  361  SSRDTSAPDDAVAEDVSSSRLVAGRDVRHPEFGHGWVQGSGHGVVTVRFETRTTGPGRTR  420

Query  418  TFPVDTGDISNASPLDSLDWP  438
            TF VD   ++ A PLDSL+WP
Sbjct  421  TFAVDDPLLTLADPLDSLEWP  441


>gi|312140131|ref|YP_004007467.1| DNA polymerase iv [Rhodococcus equi 103S]
 gi|311889470|emb|CBH48787.1| DNA polymerase IV [Rhodococcus equi 103S]
Length=447

 Score =  501 bits (1291),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 283/436 (65%), Positives = 335/436 (77%), Gaps = 3/436 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GA SAMPMHQARR
Sbjct  13   VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGAHSAMPMHQARR  72

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG +YG  SR+VFD +R  +PV+EQLS DEAF EP +LAG    +VE +
Sbjct  73   LVGPAAVVLPPRGSLYGHVSRQVFDALRVRMPVLEQLSMDEAFGEPAELAGVGKAEVERY  132

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR  V  ETGL+AS+GAG+GKQ+AKIASGLAKP+G+ VV    +  L+S LPVR+LW
Sbjct  133  CEELRALVLAETGLVASIGAGAGKQVAKIASGLAKPNGVTVVSPDVQHQLMSALPVRKLW  192

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPVAEEKL RLGI+TIG LAAL DAE  ++LG TIGP+LHRLARGIDDRPV ERA+AK
Sbjct  193  GVGPVAEEKLKRLGIDTIGALAALPDAEVVSVLGGTIGPSLHRLARGIDDRPVAERADAK  252

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+T+A D+ T+  L  A+D+ A  AH+RL RDGR ART+ +KL+KSDMS +TRS T
Sbjct  253  QVSAETTYAEDIVTLAGLRRAVDASAAAAHRRLDRDGRAARTVVLKLRKSDMSIVTRSLT  312

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TTD   L   A+R + DPL++GPIRL+GVGF GLS + Q SLF + D  Q   A  
Sbjct  313  LPYATTDLQILTATAQRQVIDPLELGPIRLVGVGFGGLSAVSQGSLFPELD--QAVPAED  370

Query  361  YVETPGAVVPAAHDATM-WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
             V    A+     D T+ WR G DV+HPE GHGWVQGAGHGVVTVRFETR +G G +RTF
Sbjct  371  DVAEADAIAEDGSDTTVRWRPGMDVSHPEYGHGWVQGAGHGVVTVRFETRSTGRGPSRTF  430

Query  420  PVDTGDISNASPLDSL  435
                 D+  A  +DSL
Sbjct  431  DDTDCDLVVADVIDSL  446


>gi|325674388|ref|ZP_08154076.1| DNA polymerase IV 1 [Rhodococcus equi ATCC 33707]
 gi|325554648|gb|EGD24322.1| DNA polymerase IV 1 [Rhodococcus equi ATCC 33707]
Length=449

 Score =  500 bits (1288),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 286/438 (66%), Positives = 338/438 (78%), Gaps = 5/438 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GA SAMPMHQARR
Sbjct  13   VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGAHSAMPMHQARR  72

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVVLPPRG +YG  SR+VFD +R  +PV+EQLS DEAF EP +LAG    +VE +
Sbjct  73   LVGPAAVVLPPRGSLYGHVSRQVFDALRVRMPVLEQLSMDEAFGEPAELAGVGKAEVERY  132

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR  V  ETGL+AS+GAG+GKQ+AKIASGLAKP+G+ VV    +Q L+S LPVR+LW
Sbjct  133  CEELRALVLAETGLVASIGAGAGKQVAKIASGLAKPNGVTVVSPDVQQQLMSALPVRKLW  192

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPVAEEKL RLGI+TIG LAAL DAE  ++LG TIGP+LHRLARGIDDRPV ERA+AK
Sbjct  193  GVGPVAEEKLKRLGIDTIGALAALPDAEVVSVLGGTIGPSLHRLARGIDDRPVAERADAK  252

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+T+A D+ T+  L  A+D+ A  AH+RL RDGR ART+ +KL+KSDMS +TRS T
Sbjct  253  QVSAETTYAEDIVTLAGLRRAVDASAAAAHRRLDRDGRAARTVVLKLRKSDMSIVTRSLT  312

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +PY TTD   L   A+R + DPL++GPIRL+GVGF GLS + Q SLF + D  Q   A  
Sbjct  313  LPYATTDLQILTATAQRQVIDPLELGPIRLVGVGFGGLSAVSQGSLFPELD--QAVPAED  370

Query  361  YV-ETPG-AVVPAAHDATM-WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR  417
             V E  G A+     D T+ WR G DV+HPE GHGWVQGAGHGVVTVRFETR +G G +R
Sbjct  371  DVAEAEGDAIAEDGSDTTVRWRPGMDVSHPEYGHGWVQGAGHGVVTVRFETRSTGRGPSR  430

Query  418  TFPVDTGDISNASPLDSL  435
            TF     D+  A  +DSL
Sbjct  431  TFDDTDCDLVVADVIDSL  448


>gi|326382572|ref|ZP_08204263.1| DNA polymerase IV [Gordonia neofelifaecis NRRL B-59395]
 gi|326198691|gb|EGD55874.1| DNA polymerase IV [Gordonia neofelifaecis NRRL B-59395]
Length=447

 Score =  496 bits (1276),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 278/441 (64%), Positives = 324/441 (74%), Gaps = 5/441 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LH+DMDAFFASVEQLTRPTL GRPVLVGG GGRGVVAGASYE+R +GA SAMPMHQARR
Sbjct  1    MLHIDMDAFFASVEQLTRPTLAGRPVLVGGAGGRGVVAGASYESRVFGAHSAMPMHQARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVV+PPRG VY + S RVFD VR  VP++E LSFDEAF EP +LAGA   +   F
Sbjct  61   LVGGAAVVVPPRGSVYRVVSGRVFDVVRSFVPIIETLSFDEAFGEPAELAGATVAEALAF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             ERLR  +R++TGL ASVG GSGKQIAKIASG+AKPDG+RV+  + E   L  LPVR+LW
Sbjct  121  AERLRASIREQTGLPASVGFGSGKQIAKIASGMAKPDGVRVISPSSELEFLQELPVRKLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPV  ++L RLG+ETIG LAALSDAE  ++LGAT GPALHRLA+G+DDRPV+ERAEAK
Sbjct  181  GIGPVTGDRLARLGVETIGHLAALSDAEVVSVLGATNGPALHRLAQGVDDRPVMERAEAK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTF VD+     L  A+   A  AH+RL  DGRGART+ VKL++SDMS LTRS T
Sbjct  241  QISAESTFPVDIVDAPALRIAVAGAAAGAHRRLAADGRGARTVVVKLRRSDMSILTRSIT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P  TTD   L   A R+  DPL++GPIRL+GVG+SGLSD +QESLF        T  A 
Sbjct  301  LPGATTDLDVLTAAAHRVTLDPLEVGPIRLVGVGYSGLSDAQQESLFPGLGDEPNTGDAQ  360

Query  361  YVETPGAVVPAAH----DATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSA  416
              +    V P  H    D   W  G DV HP+ GHGWVQG GHG VTVRFETR +GPG A
Sbjct  361  P-QAADPVAPEEHARESDPADWPTGTDVHHPDHGHGWVQGGGHGFVTVRFETRATGPGRA  419

Query  417  RTFPVDTGDISNASPLDSLDW  437
             TF +    ++ A PLDSL W
Sbjct  420  YTFRLPEPALTRADPLDSLGW  440


>gi|229490455|ref|ZP_04384296.1| DNA polymerase IV 1 [Rhodococcus erythropolis SK121]
 gi|229322745|gb|EEN88525.1| DNA polymerase IV 1 [Rhodococcus erythropolis SK121]
Length=442

 Score =  496 bits (1276),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 277/444 (63%), Positives = 330/444 (75%), Gaps = 12/444 (2%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LHLDMDAFFAS EQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  1    MLHLDMDAFFASAEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            ++G +AVVLPPR  +Y + S+R FD +R  +P++EQLS DEAF EP +LAG  A++V  F
Sbjct  61   MVGASAVVLPPRMSLYSVLSKRTFDALRLRMPILEQLSVDEAFGEPVELAGVGADEVRAF  120

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR  ++ ETGL+AS+GAG+GKQ+AKIASGLAKPDG+ V+    +  LL  LPVR+LW
Sbjct  121  CEDLRALIKAETGLVASIGAGAGKQVAKIASGLAKPDGVAVIPPGMQHELLDPLPVRKLW  180

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKL RLGIETIG  A    AE A+ILG T+GP LHRLA+GIDDRPV ERAE+K
Sbjct  181  GIGPVAEEKLKRLGIETIGGFARTPIAEVASILGTTVGPGLHRLAQGIDDRPVAERAESK  240

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA D+ TM QL  A++S    A  RL +DGR ART+ +KLKKSDMS LTRS T
Sbjct  241  QISAESTFAADIVTMAQLRAAVESSGRAAFSRLEKDGRAARTVVLKLKKSDMSILTRSVT  300

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P+ T D   L   A++ + DP ++GPIRL+GVGF+GLS +RQ SLF + D   +    +
Sbjct  301  LPFATIDRQILIATAQKQVIDPQELGPIRLVGVGFAGLSTVRQGSLFPELD---QDVPGY  357

Query  361  YVET-PGAVVPAAHDATM--------WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS  411
             VET  GA+  A  DA +        W  G DV HPE GHGWVQGAGHGVVTVRFETR S
Sbjct  358  PVETLTGALDEAELDAPVAARVPQRYWHPGLDVKHPEYGHGWVQGAGHGVVTVRFETRSS  417

Query  412  GPGSARTFPVDTGDISNASPLDSL  435
            G G A+TF      +  A  +DSL
Sbjct  418  GTGIAKTFAESDEVLEVADAVDSL  441


>gi|343924225|ref|ZP_08763788.1| DNA polymerase IV [Gordonia alkanivorans NBRC 16433]
 gi|343766030|dbj|GAA10714.1| DNA polymerase IV [Gordonia alkanivorans NBRC 16433]
Length=519

 Score =  494 bits (1272),  Expect = 1e-137, Method: Compositional matrix adjust.
 Identities = 286/471 (61%), Positives = 337/471 (72%), Gaps = 34/471 (7%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            V+HLDMDAFFASVEQLTRPTLRGRPVLVGG GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  42   VMHLDMDAFFASVEQLTRPTLRGRPVLVGGSGGRGVVAGASYEARVFGARSAMPMHQARR  101

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIG T VV+PPRG VYG  S+RVF  VR  VPV+E LSFDEAFAEP +LAGA       F
Sbjct  102  LIGPTGVVVPPRGAVYGKVSKRVFRLVREAVPVIETLSFDEAFAEPAELAGATVAQAREF  161

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             E++R R+R E GL ASVG GSGKQ+AKIASG+AKPDG+ V+  + E   L GLPVR+LW
Sbjct  162  AEQVRARIRTECGLAASVGFGSGKQLAKIASGMAKPDGVMVIPPSGEIEFLHGLPVRKLW  221

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPV+ ++L RLGI+TIG LA +S  E A++LGAT+GPALHRLA+G+DDRPV ERA AK
Sbjct  222  GIGPVSGDRLARLGIDTIGDLARMSTVEVASVLGATVGPALHRLAQGVDDRPVAERASAK  281

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA D+  +++L +AI   A  AH+RLL+DGRGART+ +KLK+SDMS LTRSAT
Sbjct  282  QISAESTFAEDIVDLDELRKAIRKAATDAHRRLLKDGRGARTVVLKLKRSDMSILTRSAT  341

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLT------Q  354
                TTD   L   A+RL  DP  +G IRL+GVGFSGLS ++Q +LF D D         
Sbjct  342  TAAATTDFDDLERTAQRLALDPRTVGAIRLVGVGFSGLSAVQQYALFDDLDAAPDETTHH  401

Query  355  ETAAAHYVETPGA-------VVPAAHDATM---------------------WRVGDDVAH  386
            +TA+A    +P +       V    HD T+                     +  G DV H
Sbjct  402  DTASAGGAASPSSDSGGIVEVSETVHDTTVDTESPEPVRFAPGGNPQSRAPFAPGADVTH  461

Query  387  PELGHGWVQGAGHGVVTVRFETRGSGPGSARTFPVDTGDISNASPLDSLDW  437
            PE GHGWVQG+GHGVVTVRFETR +GPG  RTF VD  D+  A PLDSL+W
Sbjct  462  PEFGHGWVQGSGHGVVTVRFETRTTGPGRTRTFGVDDPDLRPADPLDSLEW  512


>gi|226307027|ref|YP_002766987.1| DNA polymerase IV [Rhodococcus erythropolis PR4]
 gi|226186144|dbj|BAH34248.1| DNA polymerase IV [Rhodococcus erythropolis PR4]
Length=454

 Score =  490 bits (1262),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 277/444 (63%), Positives = 328/444 (74%), Gaps = 12/444 (2%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLHLDMDAFFAS EQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct  13   VLHLDMDAFFASAEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR  72

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            ++G  AVVLPPR  +Y + S+R FD +R  +P++EQLS DEAF EP +LAG  A++V  F
Sbjct  73   MVGGGAVVLPPRMSLYSVLSKRTFDALRLRMPILEQLSVDEAFGEPVELAGVGADEVRAF  132

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            CE LR  ++ ETGL+AS+GAG+GKQ+AKIASGLAKPDG+ V+    +  LL  LPVR+LW
Sbjct  133  CEDLRALIKAETGLVASIGAGAGKQVAKIASGLAKPDGVAVIPPGMQHELLDPLPVRKLW  192

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAEEKL RLGIETIG  A    AE A+ILG T+GP LHRLA+GIDDRPV ERAE+K
Sbjct  193  GIGPVAEEKLKRLGIETIGGFARTPIAEVASILGTTVGPGLHRLAQGIDDRPVAERAESK  252

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAESTFA D+ TM QL  A++S    A  RL +DGR ART+ +KLKKSDMS LTRS T
Sbjct  253  QISAESTFAADIVTMAQLRAAVESSGRAAFSRLEKDGRAARTVVLKLKKSDMSILTRSVT  312

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +P+ T D   L   A++ + DP ++GPIRL+GVGF+GLS +RQ SLF + D   +    +
Sbjct  313  LPFATIDRQILVATAQKQVIDPQELGPIRLVGVGFAGLSTVRQGSLFPELD---QDVPGY  369

Query  361  YVET-PGAVVPAAHDATM--------WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS  411
             VET  GA+  A  D  +        W  G DV HPE GHGWVQGAGHGVVTVRFETR S
Sbjct  370  PVETLTGALDEAELDVPVAARVPQRYWHPGLDVKHPEYGHGWVQGAGHGVVTVRFETRSS  429

Query  412  GPGSARTFPVDTGDISNASPLDSL  435
            G G A+TF      +  A  +DSL
Sbjct  430  GTGIAKTFAESDEVLEVADAVDSL  453


>gi|227548924|ref|ZP_03978973.1| DNA polymerase IV [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078949|gb|EEI16912.1| DNA polymerase IV [Corynebacterium lipophiloflavum DSM 44291]
Length=455

 Score =  471 bits (1211),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 249/450 (56%), Positives = 308/450 (69%), Gaps = 11/450 (2%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAF+AS EQLTRPTL+GRPVLV G+ GRGVVAGASYEAR YGARSAMP H+A R
Sbjct  5    VLHIDMDAFYASCEQLTRPTLKGRPVLVAGVSGRGVVAGASYEARKYGARSAMPTHRAAR  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G   V++ PR  VY  ASRRVF+ +   V VVEQLS DEAF EP +LAGA  E+V  +
Sbjct  65   LVGPKVVLVAPRRAVYSTASRRVFEVIARHVAVVEQLSIDEAFMEPAELAGASPEEVRAW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             + LR  +++ETGL +S+GAGSGKQ AKI SGLAKPDG+ V+  AE+  +L  LPV +LW
Sbjct  125  ADTLRATIKEETGLPSSIGAGSGKQYAKIGSGLAKPDGVFVIPRAEQLEILHPLPVSQLW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPV E KL  +GIETIG  AALS+ E    LG  +   L  LARGID+R V  RAEAK
Sbjct  185  GVGPVTEAKLASVGIETIGDFAALSEREVEIALGGAVAKHLWALARGIDNREVAPRAEAK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS+E T+  DLTT  Q++EA+   A  +H+RLL DGRGART++VKL+ +D    TRSAT
Sbjct  245  QISSEHTYPQDLTTAPQVNEALTRAAAESHRRLLHDGRGARTVSVKLRMADFRVETRSAT  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQ------  354
            +PY T DA  L   A +L+  P ++GPIRL+GV +SGL D  Q+ LF + D         
Sbjct  305  LPYATDDAETLAATAFKLVRYPDEVGPIRLVGVSYSGLEDALQDVLFPELDQVNSAGSVS  364

Query  355  ---ETAAAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS  411
               E   + + E     +  A   + WR   DV HPE GHGW+QG GHG VTVRFETR +
Sbjct  365  SDIEVGVSDHAEPVHVEITDA--PSGWRATQDVYHPEYGHGWIQGTGHGWVTVRFETRAT  422

Query  412  GPGSARTFPVDTGDISNASPLDSLDWPDYI  441
            GPG  RT  VD  D+S A P+DSL W D++
Sbjct  423  GPGRTRTLRVDDADLSAADPVDSLAWEDWL  452


>gi|300780843|ref|ZP_07090697.1| DNA-directed DNA polymerase IV [Corynebacterium genitalium ATCC 
33030]
 gi|300532550|gb|EFK53611.1| DNA-directed DNA polymerase IV [Corynebacterium genitalium ATCC 
33030]
Length=463

 Score =  457 bits (1175),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 307/451 (69%), Gaps = 13/451 (2%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAF+AS EQLTRPTL+GRPVLV G+ GRGVVAGASYEAR +GARSAMP ++A R
Sbjct  8    VLHIDMDAFYASCEQLTRPTLKGRPVLVAGVTGRGVVAGASYEARKFGARSAMPTYRATR  67

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AV++ PR  VY  ASRRVF+ +   V VVEQLS DEAF EP +L GA  ++V  +
Sbjct  68   LVGPQAVLVTPRRKVYTTASRRVFEIIARHVDVVEQLSIDEAFMEPHELQGATPDEVRDW  127

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
               LR ++R+ETGL +S+GAGSGKQ AKI SGLAKPDG  ++  A++  +L  LPV+ LW
Sbjct  128  ANTLRDQIREETGLPSSIGAGSGKQYAKIGSGLAKPDGTYIIPKAQQTDILHPLPVKELW  187

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPV   KL   GIETIG  AA+++ E    LG  +G  L  LARGIDDR V  RAE+K
Sbjct  188  GVGPVTGAKLTGAGIETIGDFAAMTEREVDIALGGVVGKQLWMLARGIDDRDVKPRAESK  247

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QISAE T+  DLTT  ++  AI   A  AH+RLL DGRGART TVKLK +D    +RS T
Sbjct  248  QISAEHTYPQDLTTTAEVEAAIRRAASDAHRRLLIDGRGARTATVKLKMADFHIESRSTT  307

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD--------L  352
            +PY T D   L   A R+   P ++GPIRL+GVGFSGL D+ Q++LF + D        +
Sbjct  308  LPYATDDLETLVAAAFRIARYPDELGPIRLVGVGFSGLEDVMQDTLFPELDQAIIPHRVI  367

Query  353  TQETAAAHYVETPGAVVPAAHDA--TMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRG  410
             +ET  +   + P   +PA  +A  T W    DV HPE GHGW+QGAGHG VTVRFETR 
Sbjct  368  PEETGVSDLADAP---LPAFEEAAKTGWAATQDVFHPEYGHGWIQGAGHGFVTVRFETRA  424

Query  411  SGPGSARTFPVDTGDISNASPLDSLDWPDYI  441
            +GPG  + F  D  D+  A P++SL W +++
Sbjct  425  TGPGKVKNFRADDPDLVPADPVNSLAWEEWL  455


>gi|302524794|ref|ZP_07277136.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302433689|gb|EFL05505.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
Length=439

 Score =  454 bits (1169),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 244/436 (56%), Positives = 302/436 (70%), Gaps = 3/436 (0%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            V+HLD+DAF+AS EQLTRPTLRGR V+VGG G RGVVAGASYE+R YG RSAMPM QARR
Sbjct  5    VVHLDLDAFYASAEQLTRPTLRGRAVVVGGTGHRGVVAGASYESREYGVRSAMPMSQARR  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+    VVLPPR  +Y + S++VFD V  + PV+E++S DEAFAEPP LAGA  E V  +
Sbjct  65   LLPAGGVVLPPRFRLYEMLSKQVFDVVSEVAPVLERISLDEAFAEPPALAGASVEQVTEW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             E+LR R+R+ETGL AS+GAG+GKQ+AKI S  AKPDG+ VV    E+  L+ LPVR LW
Sbjct  125  AEKLRTRIREETGLTASIGAGTGKQVAKIGSDRAKPDGLLVVPPGTEREFLAPLPVRALW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE KL  +G+ T+G+LAAL + +A + LG  +G  L RLA G DDRPV ER EAK
Sbjct  185  GIGPVAEAKLRTIGVLTLGELAALPEPDAVSTLGGVVGRDLRRLASGFDDRPVAERGEAK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+TF VD+  + +L   +  IA  AH RL++ GR ART+ +KL+ +DMST+TRS T
Sbjct  245  QVSAETTFDVDVVDLARLRAEVRKIAAGAHARLVKAGRVARTVVIKLRHTDMSTVTRSET  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADS-DLTQETAAA  359
               PT D   L   A RLL DP + G +RL GV FSGLS   Q++LF+ +  +  E    
Sbjct  305  TASPTDDLEQLAATAERLLLDPQEFGGVRLAGVAFSGLSVPHQDALFSLTVPVATEEPVV  364

Query  360  HYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF  419
                +PG   P +  ++ WR GDDV H E G GWVQGAGHG VTVRFETR SGPG ARTF
Sbjct  365  TSAPSPGGSAPVS--SSGWRPGDDVVHAEFGTGWVQGAGHGRVTVRFETRTSGPGVARTF  422

Query  420  PVDTGDISNASPLDSL  435
                  ++   P D L
Sbjct  423  DQTDPALTRGEPSDCL  438


>gi|311741548|ref|ZP_07715372.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium 
ATCC 33035]
 gi|311303718|gb|EFQ79797.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium 
ATCC 33035]
Length=462

 Score =  451 bits (1161),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 244/455 (54%), Positives = 304/455 (67%), Gaps = 15/455 (3%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFASVEQLTRPTL+GRPVLVGG  GRGVVAGASYEAR YGA SAMPM++A++
Sbjct  5    VLHIDMDAFFASVEQLTRPTLQGRPVLVGGTSGRGVVAGASYEARVYGAHSAMPMYRAQQ  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G+ AVV+ PR  VY  ASRRVF  +   V V+EQLS DEAF EP  L GA AE+V+ +
Sbjct  65   LVGLRAVVVQPRRAVYSAASRRVFGIIAQHVEVIEQLSIDEAFMEPAALEGASAEEVKRW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             + LR  +R+ETGL  S+GAGSGKQ AKI SG AKPDG  V+    +  +L  L V +LW
Sbjct  125  ADELRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTFVIPAERQLDMLHPLAVNKLW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPV   KL  +G+ETIGQLAA++  E    +G+ +G  L +LARGIDDR V  RA +K
Sbjct  185  GVGPVTGAKLKSIGVETIGQLAAMTRKEVEISIGSVVGLQLWQLARGIDDREVAPRAISK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS E T+  DL T  ++  AI   AE AH+RLL+DGRGART+TVKL+ +D    +RS T
Sbjct  245  QISTEHTYPKDLQTAPEVDAAITRAAEGAHRRLLKDGRGARTVTVKLRMADFHIESRSTT  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF----------ADS  350
            +PY T DA  L   A +L   P ++GPIRL+GV +SGL   RQ+ LF          A +
Sbjct  305  LPYATDDAAVLTAAAFKLARYPDELGPIRLVGVSYSGLETARQDVLFPELDREIVRPAPA  364

Query  351  DLTQETA----AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRF  406
            D   ET     A   +  P   V    D   W    DV HP+ GHGW+QGAGHGVV+VRF
Sbjct  365  DTDYETGVSDDATPAIPAPTVTVEEETD-NQWHATQDVFHPDYGHGWIQGAGHGVVSVRF  423

Query  407  ETRGSGPGSARTFPVDTGDISNASPLDSLDWPDYI  441
            ETR +GPG  ++F  +   +  A PLDSLDW D++
Sbjct  424  ETRATGPGRTKSFAANDPALVPADPLDSLDWQDWL  458


>gi|291004643|ref|ZP_06562616.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338]
Length=438

 Score =  451 bits (1161),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 258/440 (59%), Positives = 309/440 (71%), Gaps = 8/440 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            +LH+DMDAFFASVEQLTRPT+RGRPVLVGGLG RG VAGASYEAR YGARSAMPM +ARR
Sbjct  1    MLHMDMDAFFASVEQLTRPTVRGRPVLVGGLGPRGTVAGASYEARTYGARSAMPMAEARR  60

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L  V AVVLPPR  VY   S RV   VR +  VV+Q+S DEAF EP +LAGA    VE F
Sbjct  61   LCPV-AVVLPPRFRVYSAVSERVLGIVRDVSEVVQQVSIDEAFMEPAELAGAEPATVERF  119

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
              RLR RVR ETG+ AS+GAGSGKQ+AKIASGLAKPDG  VV   EE  LLS LPVR+LW
Sbjct  120  AARLRERVRRETGVTASIGAGSGKQLAKIASGLAKPDGALVVPPQEEIELLSALPVRKLW  179

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPV E KLHR+G+ TIG+LAAL   +  ++LG   G  LHRLA GIDD PV ERAEAK
Sbjct  180  GIGPVTEGKLHRIGVHTIGELAALHLGDVTSLLGQAHGTELHRLAHGIDDHPVEERAEAK  239

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+TF VD+T   +L   +  +A++AH+RL+  GR A+T+TVK++ SD +T++R+ T
Sbjct  240  QVSAETTFDVDITDQGRLLAEVAGMADNAHRRLVSSGRAAKTVTVKVRDSDFTTISRAET  299

Query  301  MPYPTTDAGALFTVARRLLPDPLQIG-PIRLLGVGFSGLSDIRQESLFAD--SDLTQETA  357
                T+DA  L   ARRL    +  G PIRL+GV +SGL++  QE+LF    +++   T 
Sbjct  300  FASATSDAATLAAAARRLTSVAVPPGTPIRLVGVSYSGLANSEQEALFESPGAEVVVSTQ  359

Query  358  AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR  417
            +  + + P     AA  A  WR GDDV H E GHGWVQGAG G VTVRFET  +G G AR
Sbjct  360  SVEHTQVP----EAAPTARGWRAGDDVRHDEHGHGWVQGAGLGRVTVRFETATTGRGVAR  415

Query  418  TFPVDTGDISNASPLDSLDW  437
            TF  D   +    PLDSL W
Sbjct  416  TFASDEPLLHPGDPLDSLGW  435


>gi|300783435|ref|YP_003763726.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
 gi|299792949|gb|ADJ43324.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
 gi|340524821|gb|AEK40026.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length=435

 Score =  451 bits (1160),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 248/435 (58%), Positives = 299/435 (69%), Gaps = 5/435 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            V+HLD+DAF+AS EQLTRPTL GRPVLVGGLG RGVVAGASYE+RA+G +SAMPM QARR
Sbjct  5    VIHLDLDAFYASAEQLTRPTLAGRPVLVGGLGPRGVVAGASYESRAFGIKSAMPMAQARR  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+    V++PPR  VY   S+ VF  V  + PV+E++S DE+FAEPP L GA  + V  F
Sbjct  65   LLPANGVIVPPRFRVYERLSQEVFAVVTEVAPVLEKISLDESFAEPPSLIGASFDAVTEF  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
            C  LR R+R ETGL+AS+GAG+GKQIAKIAS  AKPDG+ VV    E+A L+ LPVR LW
Sbjct  125  CAALRARIRAETGLVASIGAGNGKQIAKIASDEAKPDGLLVVPQGTERAFLAPLPVRALW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            GIGPVAE KL  +G++T+GQLAALS+ +A   LG  +G  L RLA G DDRPV  RAE K
Sbjct  185  GIGPVAEGKLRFIGVQTLGQLAALSEQDAVATLGGVVGRDLRRLATGADDRPVAGRAETK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            Q+SAE+TF  D+  +  L   +  IA  AHQRLL+ GR ART+ +KL+ +DM T+TRS T
Sbjct  245  QVSAETTFDTDIKDLPMLKAEVRRIAVGAHQRLLKAGRVARTVVIKLRHTDMHTVTRSET  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            +  PT D   L   A RLL DP + G IRL GV +SGLS   Q++LF    L   +A + 
Sbjct  305  ISAPTDDLAELAATAERLLIDPAEFGGIRLAGVAYSGLSVPHQDALFT---LAAPSAPST  361

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
             V T     PAA   + WR GDDV H E G GWVQGAGHG VTVRFE R SGPG ARTFP
Sbjct  362  VVST--VPAPAAAPPSEWRQGDDVVHEEFGTGWVQGAGHGRVTVRFEHRSSGPGIARTFP  419

Query  421  VDTGDISNASPLDSL  435
                 ++   P D L
Sbjct  420  QSDPALTRGDPRDCL  434


>gi|38234163|ref|NP_939930.1| DNA polymerase IV [Corynebacterium diphtheriae NCTC 13129]
 gi|81564704|sp|Q6NGD8.1|DPO4_CORDI RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|38200425|emb|CAE50113.1| DNA polymerase IV [Corynebacterium diphtheriae]
Length=451

 Score =  450 bits (1158),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 237/446 (54%), Positives = 301/446 (68%), Gaps = 9/446 (2%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            V+H+DMDAFFAS EQLTRPTLRGRPVLVGG  GRGVVAGASYEAR +GARSAMPM+QA+ 
Sbjct  5    VIHVDMDAFFASCEQLTRPTLRGRPVLVGGASGRGVVAGASYEARTFGARSAMPMYQAKA  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            LIG+  VV+ PR  VY  AS+RVF  +  +   VE++S DE F EPP+L GA A +V+T+
Sbjct  65   LIGMRGVVVSPRFAVYRAASQRVFSILERMGGTVEKISIDEGFVEPPELYGASASEVDTW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             +RLR  +RDETGL ASVG G+GKQ+AKI S LAKPDGI +   +E +  +  LPV RLW
Sbjct  125  AQRLRAVIRDETGLPASVGGGAGKQVAKICSDLAKPDGIYLCAASEHEEKMYPLPVGRLW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPV   KL +LG+ETIG LA +S+ E    LG T+G +L RLA+G DDR V  RA AK
Sbjct  185  GVGPVTRTKLQQLGVETIGDLARMSEREIDISLGTTVGRSLWRLAQGHDDREVAPRAIAK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS E T+  DL T   +  AI   +  +H+RLL DGRGART++VKL+ +D    +RSAT
Sbjct  245  QISVEHTYPKDLVTSRAVDTAIIRASRESHRRLLDDGRGARTVSVKLRMADFRIESRSAT  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF---------ADSD  351
            +PY T +   +   A +L   P ++GPIRL+GVG SGL D RQ+ LF          D+D
Sbjct  305  LPYATDNLDTVTATALKLARYPDEVGPIRLVGVGLSGLEDARQDILFPELDRVVPVKDTD  364

Query  352  LTQETAAAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS  411
                 +  H  +   +    +  A  WR   D+ HP+ GHGWVQG GHG +TVRFETR +
Sbjct  365  FEVGVSDPHDSDLEISTTDESPTAIGWRATQDIWHPDYGHGWVQGLGHGKITVRFETRTT  424

Query  412  GPGSARTFPVDTGDISNASPLDSLDW  437
            GPG  RTF  +   +S+A P++SLDW
Sbjct  425  GPGKVRTFDTNDALLSSADPINSLDW  450


>gi|296117557|ref|ZP_06836141.1| ATP-NAD kinase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969288|gb|EFG82529.1| ATP-NAD kinase [Corynebacterium ammoniagenes DSM 20306]
Length=444

 Score =  446 bits (1148),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 232/437 (54%), Positives = 296/437 (68%), Gaps = 6/437 (1%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFAS EQLTRPTL GRPVLVGG+ GRGVVAGASYEAR YGA SAMPM++A++
Sbjct  5    VLHIDMDAFFASCEQLTRPTLMGRPVLVGGMSGRGVVAGASYEARKYGAHSAMPMYRAQQ  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVV+ PR  VY +AS+RVF  +   V +VEQLS DEA+ EP +L GA  E+VE +
Sbjct  65   LVGPKAVVVRPRFEVYRLASQRVFHYIESHVELVEQLSIDEAYMEPAELVGASPEEVEAW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
               LR  +R++ GL AS+GAGSGKQ AKI SG AKPDG  ++   +++ +L  L V  LW
Sbjct  125  AHELRAAIREDVGLPASIGAGSGKQFAKIGSGQAKPDGAFIIPADKQEEMLHPLDVDELW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPV   KLH +G+ TIG LA LS  E   ILG+TIGP+L  +ARG+DDRPV  RAE+K
Sbjct  185  GVGPVTATKLHSIGVNTIGDLARLSQREVEIILGSTIGPSLWAMARGVDDRPVAPRAESK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
             +SAE T+  DLT+ +++  A++     AH+RLL+DGRGART+TVK++ +D  + TRS T
Sbjct  245  SVSAEHTYPEDLTSKDEVDRALERALTGAHRRLLKDGRGARTVTVKMRMADFHSETRSLT  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH  360
            + Y T D   L      L   P ++GPIRL+GVGFSGL   RQ+ LF + D    +    
Sbjct  305  LAYATDDIATLRKAMHSLARYPAELGPIRLVGVGFSGLEAERQDVLFPELDQAMVSTETR  364

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            + E          D T W    DV HPE GHGW+QG GHG V+VRFETR +GPG  ++F 
Sbjct  365  FDEETTVA-----DRT-WHATQDVFHPEYGHGWIQGTGHGFVSVRFETRATGPGPFKSFA  418

Query  421  VDTGDISNASPLDSLDW  437
             D   +  A P+DSL W
Sbjct  419  ADDDKLQPADPIDSLAW  435


>gi|134102671|ref|YP_001108332.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338]
 gi|133915294|emb|CAM05407.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338]
Length=435

 Score =  446 bits (1147),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 256/437 (59%), Positives = 306/437 (71%), Gaps = 8/437 (1%)

Query  4    LDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARRLIG  63
            +DMDAFFASVEQLTRPT+RGRPVLVGGLG RG VAGASYEAR YGARSAMPM +ARRL  
Sbjct  1    MDMDAFFASVEQLTRPTVRGRPVLVGGLGPRGTVAGASYEARTYGARSAMPMAEARRLCP  60

Query  64   VTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETFCER  123
            V AVVLPPR  VY   S RV   VR +  VV+Q+S DEAF EP +LAGA    VE F  R
Sbjct  61   V-AVVLPPRFRVYSAVSERVLGIVRDVSEVVQQVSIDEAFMEPAELAGAEPATVERFAAR  119

Query  124  LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLWGIG  183
            LR RVR ETG+ AS+GAGSGKQ+AKIASGLAKPDG  VV   EE  LLS LPVR+LWGIG
Sbjct  120  LRERVRRETGVTASIGAGSGKQLAKIASGLAKPDGALVVPPQEEIELLSALPVRKLWGIG  179

Query  184  PVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAKQIS  243
            PV E KLHR+G+ TIG+LAAL   +  ++LG   G  LHRLA GIDD PV ERAEAKQ+S
Sbjct  180  PVTEGKLHRIGVHTIGELAALHLGDVTSLLGQAHGTELHRLAHGIDDHPVEERAEAKQVS  239

Query  244  AESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSATMPY  303
            AE+TF VD+T   +L   +  +A++AH+RL+  GR A+T+TVK++ SD +T++R+ T   
Sbjct  240  AETTFDVDITDQGRLLAEVAGMADNAHRRLVSSGRAAKTVTVKVRDSDFTTISRAETFAS  299

Query  304  PTTDAGALFTVARRLLPDPLQIG-PIRLLGVGFSGLSDIRQESLFAD--SDLTQETAAAH  360
             T+DA  L   ARRL    +  G PIRL+GV +SGL++  QE+LF    +++   T +  
Sbjct  300  ATSDAATLAAAARRLTSVAVPPGTPIRLVGVSYSGLANSEQEALFESPGAEVVVSTQSVE  359

Query  361  YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP  420
            + + P     AA  A  WR GDDV H E GHGWVQGAG G VTVRFET  +G G ARTF 
Sbjct  360  HTQVP----EAAPTARGWRAGDDVRHDEHGHGWVQGAGLGRVTVRFETATTGRGVARTFA  415

Query  421  VDTGDISNASPLDSLDW  437
             D   +    PLDSL W
Sbjct  416  SDEPLLHPGDPLDSLGW  432


>gi|227833477|ref|YP_002835184.1| DNA polymerase IV [Corynebacterium aurimucosum ATCC 700975]
 gi|227454493|gb|ACP33246.1| DNA polymerase IV [Corynebacterium aurimucosum ATCC 700975]
Length=492

 Score =  446 bits (1146),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 247/458 (54%), Positives = 302/458 (66%), Gaps = 21/458 (4%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFASVEQLTRPTLRGRPVLVGG  GRGVVAGASYEARAYGA SAMPM +A++
Sbjct  16   VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTSGRGVVAGASYEARAYGAHSAMPMFRAQQ  75

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVV+ PR  VY  ASRRVF  +     V+EQLS DEAF EP  L GA   +V  +
Sbjct  76   LVGYRAVVVQPRRAVYSAASRRVFGIIAQHAGVIEQLSIDEAFMEPAALLGATPAEVREW  135

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             E LRR +R ETGL +S+GAG+GKQ AKIASG AKPDG  VV     + L+  LPV +LW
Sbjct  136  SENLRRVIRTETGLPSSIGAGAGKQSAKIASGEAKPDGTFVVPQERFKELIHPLPVGKLW  195

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G GPV ++KL  +G+ETIGQLAA+S  E    LG  +G  L  LA+GID+RPV  RA AK
Sbjct  196  GAGPVTQQKLAAIGVETIGQLAAMSRKEVEISLGGVVGVQLWELAQGIDERPVAPRAIAK  255

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS E T+  DL T  ++  A+   A  AH RLL+DGRGART+TVKL+ +D    +RSAT
Sbjct  256  QISTEFTYPTDLRTAAEVDAALIRAAHGAHSRLLKDGRGARTVTVKLRMADFHIESRSAT  315

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD---------SD  351
            + Y T D   L   A  L   P ++GPIRL+GV +SGL + RQ+ LF +          D
Sbjct  316  LSYATDDLKVLEAKALSLARYPEELGPIRLVGVSYSGLEEARQDVLFPELDREIVRQAPD  375

Query  352  LTQETAAAHYVETPGAV-----VPAAHDA-----TMWRVGDDVAHPELGHGWVQGAGHGV  401
               ET  + Y+  PG+      V +  DA       WR   DV HP+ GHGW+QGAGHGV
Sbjct  376  TDYETGVSDYL--PGSTSAPVNVSSTADAEESSSCRWRATQDVYHPDFGHGWIQGAGHGV  433

Query  402  VTVRFETRGSGPGSARTFPVDTGDISNASPLDSLDWPD  439
            V+VRFETR +GPG  R+F  +  ++  A PL+SL W D
Sbjct  434  VSVRFETRATGPGFVRSFAAEEEELRPADPLNSLAWED  471


>gi|255325326|ref|ZP_05366432.1| DNA polymerase IV [Corynebacterium tuberculostearicum SK141]
 gi|255297891|gb|EET77202.1| DNA polymerase IV [Corynebacterium tuberculostearicum SK141]
Length=462

 Score =  446 bits (1146),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 246/455 (55%), Positives = 304/455 (67%), Gaps = 15/455 (3%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFASVEQLTRPTL+GRPVLVGG  GRGVVAGASYEAR YGA SAMPM++A++
Sbjct  5    VLHIDMDAFFASVEQLTRPTLQGRPVLVGGTSGRGVVAGASYEARVYGAHSAMPMYRAQQ  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G+ AVV+ PR  VY  ASRRVF  +   V V+EQLS DEAF EP  L GA AE+V+ +
Sbjct  65   LVGLRAVVVQPRRAVYSAASRRVFGIIAQHVEVIEQLSIDEAFMEPAALEGASAEEVKRW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             + LR  +R+ETGL  S+GAGSGKQ AKI SG AKPDG  V+    +  +L  L V +LW
Sbjct  125  ADELRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTFVIPAERQLDMLHPLAVNKLW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G+GPV   KL  +G+ETIGQLAA++  E    +G+ +G  L +LARGIDDR V  RA +K
Sbjct  185  GVGPVTGAKLKSIGVETIGQLAAMTRKEVEISIGSVVGLQLWQLARGIDDREVAPRAISK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS E T+  DL T  ++  AI   AE AH+RLL+DGRGART+TVKL+ +D    +RS T
Sbjct  245  QISTEHTYPKDLQTAPEVDAAIARAAEGAHRRLLKDGRGARTVTVKLRMADFHIESRSTT  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF----------ADS  350
            +PY T DA  L   A +L   P ++GPIRL+GV +SGL   RQ+ LF          A +
Sbjct  305  LPYATDDAAVLTAAAFKLARYPDELGPIRLVGVSYSGLEAARQDVLFPELDREIVRPAPA  364

Query  351  DLTQETA----AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRF  406
            D   ET     A   +  P   V    D   W    DV HPE GHGW+QGAGHGVV+VRF
Sbjct  365  DTDYETGVSDDATPAIPAPTVTVEEETD-NQWHATQDVFHPEYGHGWIQGAGHGVVSVRF  423

Query  407  ETRGSGPGSARTFPVDTGDISNASPLDSLDWPDYI  441
            ETR +GPG  ++F  D   +  A PLDSLDW D++
Sbjct  424  ETRATGPGRTKSFAADDPALVPADPLDSLDWQDWL  458


>gi|262184465|ref|ZP_06043886.1| DNA polymerase IV [Corynebacterium aurimucosum ATCC 700975]
Length=481

 Score =  446 bits (1146),  Expect = 6e-123, Method: Compositional matrix adjust.
 Identities = 247/458 (54%), Positives = 302/458 (66%), Gaps = 21/458 (4%)

Query  1    VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR  60
            VLH+DMDAFFASVEQLTRPTLRGRPVLVGG  GRGVVAGASYEARAYGA SAMPM +A++
Sbjct  5    VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTSGRGVVAGASYEARAYGAHSAMPMFRAQQ  64

Query  61   LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF  120
            L+G  AVV+ PR  VY  ASRRVF  +     V+EQLS DEAF EP  L GA   +V  +
Sbjct  65   LVGYRAVVVQPRRAVYSAASRRVFGIIAQHAGVIEQLSIDEAFMEPAALLGATPAEVREW  124

Query  121  CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW  180
             E LRR +R ETGL +S+GAG+GKQ AKIASG AKPDG  VV     + L+  LPV +LW
Sbjct  125  SENLRRVIRTETGLPSSIGAGAGKQSAKIASGEAKPDGTFVVPQERFKELIHPLPVGKLW  184

Query  181  GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK  240
            G GPV ++KL  +G+ETIGQLAA+S  E    LG  +G  L  LA+GID+RPV  RA AK
Sbjct  185  GAGPVTQQKLAAIGVETIGQLAAMSRKEVEISLGGVVGVQLWELAQGIDERPVAPRAIAK  244

Query  241  QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT  300
            QIS E T+  DL T  ++  A+   A  AH RLL+DGRGART+TVKL+ +D    +RSAT
Sbjct  245  QISTEFTYPTDLRTAAEVDAALIRAAHGAHSRLLKDGRGARTVTVKLRMADFHIESRSAT  304

Query  301  MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD---------SD  351
            + Y T D   L   A  L   P ++GPIRL+GV +SGL + RQ+ LF +          D
Sbjct  305  LSYATDDLKVLEAKALSLARYPEELGPIRLVGVSYSGLEEARQDVLFPELDREIVRQAPD  364

Query  352  LTQETAAAHYVETPGAV-----VPAAHDA-----TMWRVGDDVAHPELGHGWVQGAGHGV  401
               ET  + Y+  PG+      V +  DA       WR   DV HP+ GHGW+QGAGHGV
Sbjct  365  TDYETGVSDYL--PGSTSAPVNVSSTADAEESSSCRWRATQDVYHPDFGHGWIQGAGHGV  422

Query  402  VTVRFETRGSGPGSARTFPVDTGDISNASPLDSLDWPD  439
            V+VRFETR +GPG  R+F  +  ++  A PL+SL W D
Sbjct  423  VSVRFETRATGPGFVRSFAAEEEELRPADPLNSLAWED  460



Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 973451812480


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40