BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1537
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
gi|13881213|gb|AAK45855.1| DNA-damage-inducible protein P, putat... 917 0.0
gi|161350072|ref|NP_336041.2| DNA polymerase IV [Mycobacterium t... 915 0.0
gi|121637458|ref|YP_977681.1| DNA polymerase IV [Mycobacterium b... 915 0.0
gi|253799408|ref|YP_003032409.1| DNA polymerase IV dinX [Mycobac... 912 0.0
gi|148822761|ref|YP_001287515.1| DNA polymerase IV [Mycobacteriu... 912 0.0
gi|289761700|ref|ZP_06521078.1| DNA polymerase IV dinX (pol IV 1... 909 0.0
gi|289750104|ref|ZP_06509482.1| DNA polymerase IV [Mycobacterium... 748 0.0
gi|296164411|ref|ZP_06846986.1| DNA polymerase IV 1 [Mycobacteri... 711 0.0
gi|240167929|ref|ZP_04746588.1| DNA polymerase IV [Mycobacterium... 711 0.0
gi|254821465|ref|ZP_05226466.1| DNA polymerase IV [Mycobacterium... 699 0.0
gi|183982372|ref|YP_001850663.1| DNA polymerase IV, DinP_1 [Myco... 696 0.0
gi|41407346|ref|NP_960182.1| DNA polymerase IV [Mycobacterium av... 694 0.0
gi|118617186|ref|YP_905518.1| DNA polymerase IV [Mycobacterium u... 692 0.0
gi|118466313|ref|YP_882415.1| DNA polymerase IV [Mycobacterium a... 692 0.0
gi|254775682|ref|ZP_05217198.1| DNA polymerase IV [Mycobacterium... 691 0.0
gi|336457942|gb|EGO36932.1| nucleotidyltransferase/DNA polymeras... 686 0.0
gi|342860881|ref|ZP_08717531.1| DNA polymerase IV [Mycobacterium... 679 0.0
gi|161407222|ref|YP_640258.2| DNA polymerase IV [Mycobacterium s... 636 2e-180
gi|119869187|ref|YP_939139.1| DNA polymerase IV [Mycobacterium s... 636 2e-180
gi|126435694|ref|YP_001071385.1| DNA polymerase IV [Mycobacteriu... 636 3e-180
gi|118473834|ref|YP_887486.1| DNA polymerase IV [Mycobacterium s... 633 2e-179
gi|333990828|ref|YP_004523442.1| DNA polymerase IV [Mycobacteriu... 618 7e-175
gi|145224226|ref|YP_001134904.1| DNA polymerase IV [Mycobacteriu... 608 9e-172
gi|120403755|ref|YP_953584.1| DNA polymerase IV [Mycobacterium v... 598 6e-169
gi|169629787|ref|YP_001703436.1| DNA polymerase IV [Mycobacteriu... 576 3e-162
gi|333920349|ref|YP_004493930.1| DNA polymerase IV 1 [Amycolicic... 537 2e-150
gi|161598445|ref|YP_117989.2| DNA polymerase IV [Nocardia farcin... 525 8e-147
gi|54015255|dbj|BAD56625.1| putative DNA polymerase IV family pr... 524 1e-146
gi|296140331|ref|YP_003647574.1| DNA-directed DNA polymerase [Ts... 522 5e-146
gi|226360219|ref|YP_002777997.1| DNA polymerase IV [Rhodococcus ... 511 7e-143
gi|111018090|ref|YP_701062.1| DNA polymerase IV [Rhodococcus jos... 511 1e-142
gi|262202895|ref|YP_003274103.1| DNA-directed DNA polymerase [Go... 506 2e-141
gi|312140131|ref|YP_004007467.1| DNA polymerase iv [Rhodococcus ... 501 8e-140
gi|325674388|ref|ZP_08154076.1| DNA polymerase IV 1 [Rhodococcus... 500 2e-139
gi|326382572|ref|ZP_08204263.1| DNA polymerase IV [Gordonia neof... 496 4e-138
gi|229490455|ref|ZP_04384296.1| DNA polymerase IV 1 [Rhodococcus... 496 5e-138
gi|343924225|ref|ZP_08763788.1| DNA polymerase IV [Gordonia alka... 494 1e-137
gi|226307027|ref|YP_002766987.1| DNA polymerase IV [Rhodococcus ... 490 2e-136
gi|227548924|ref|ZP_03978973.1| DNA polymerase IV [Corynebacteri... 471 2e-130
gi|300780843|ref|ZP_07090697.1| DNA-directed DNA polymerase IV [... 457 2e-126
gi|302524794|ref|ZP_07277136.1| DNA-directed DNA polymerase [Str... 454 1e-125
gi|311741548|ref|ZP_07715372.1| DNA-directed DNA polymerase IV [... 451 9e-125
gi|291004643|ref|ZP_06562616.1| DNA polymerase IV [Saccharopolys... 451 9e-125
gi|300783435|ref|YP_003763726.1| DNA polymerase IV [Amycolatopsi... 451 1e-124
gi|38234163|ref|NP_939930.1| DNA polymerase IV [Corynebacterium ... 450 2e-124
gi|296117557|ref|ZP_06836141.1| ATP-NAD kinase [Corynebacterium ... 446 3e-123
gi|134102671|ref|YP_001108332.1| DNA polymerase IV [Saccharopoly... 446 4e-123
gi|227833477|ref|YP_002835184.1| DNA polymerase IV [Corynebacter... 446 5e-123
gi|255325326|ref|ZP_05366432.1| DNA polymerase IV [Corynebacteri... 446 5e-123
gi|262184465|ref|ZP_06043886.1| DNA polymerase IV [Corynebacteri... 446 6e-123
>gi|13881213|gb|AAK45855.1| DNA-damage-inducible protein P, putative [Mycobacterium tuberculosis
CDC1551]
Length=485
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/463 (100%), Positives = 463/463 (100%), Gaps = 0/463 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 23 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 82
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 83 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 142
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 143 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 202
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 203 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 262
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 263 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 322
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 323 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 382
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct 383 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 442
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct 443 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 485
>gi|161350072|ref|NP_336041.2| DNA polymerase IV [Mycobacterium tuberculosis CDC1551]
gi|161352466|ref|NP_216053.2| DNA polymerase IV [Mycobacterium tuberculosis H37Rv]
gi|161511533|ref|NP_855216.2| DNA polymerase IV [Mycobacterium bovis AF2122/97]
13 more sequence titles
Length=468
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/463 (100%), Positives = 463/463 (100%), Gaps = 0/463 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 66 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 126 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 186 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 246 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 306 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 365
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct 366 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 425
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct 426 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 468
>gi|121637458|ref|YP_977681.1| DNA polymerase IV [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148661333|ref|YP_001282856.1| DNA polymerase IV [Mycobacterium tuberculosis H37Ra]
gi|224989933|ref|YP_002644620.1| DNA polymerase IV [Mycobacterium bovis BCG str. Tokyo 172]
49 more sequence titles
Length=463
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 1 MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
>gi|253799408|ref|YP_003032409.1| DNA polymerase IV dinX [Mycobacterium tuberculosis KZN 1435]
gi|254550557|ref|ZP_05141004.1| DNA polymerase IV [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|289554671|ref|ZP_06443881.1| DNA polymerase IV dinX [Mycobacterium tuberculosis KZN 605]
7 more sequence titles
Length=468
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 66 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 126 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 186 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 246 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPT DAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 306 MPYPTPDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 365
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct 366 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 425
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct 426 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 468
>gi|148822761|ref|YP_001287515.1| DNA polymerase IV [Mycobacterium tuberculosis F11]
gi|148721288|gb|ABR05913.1| DNA polymerase IV dinX (pol IV 1) [Mycobacterium tuberculosis
F11]
Length=463
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 1 MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPT DAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 301 MPYPTPDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR
Sbjct 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
>gi|289761700|ref|ZP_06521078.1| DNA polymerase IV dinX (pol IV 1) [Mycobacterium tuberculosis
GM 1503]
gi|289709206|gb|EFD73222.1| DNA polymerase IV dinX (pol IV 1) [Mycobacterium tuberculosis
GM 1503]
Length=463
Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/463 (99%), Positives = 461/463 (99%), Gaps = 0/463 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 1 MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPT DAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 301 MPYPTPDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP
Sbjct 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
VDTGDISNASPLDSLDWP YIGQLSVEGSAGASAPTVDDVGDR
Sbjct 421 VDTGDISNASPLDSLDWPYYIGQLSVEGSAGASAPTVDDVGDR 463
>gi|289750104|ref|ZP_06509482.1| DNA polymerase IV [Mycobacterium tuberculosis T92]
gi|289690691|gb|EFD58120.1| DNA polymerase IV [Mycobacterium tuberculosis T92]
Length=404
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/379 (100%), Positives = 379/379 (100%), Gaps = 0/379 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR
Sbjct 23 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 82
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF
Sbjct 83 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 142
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW
Sbjct 143 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 202
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK
Sbjct 203 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 262
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT
Sbjct 263 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 322
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH
Sbjct 323 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 382
Query 361 YVETPGAVVPAAHDATMWR 379
YVETPGAVVPAAHDATMWR
Sbjct 383 YVETPGAVVPAAHDATMWR 401
>gi|296164411|ref|ZP_06846986.1| DNA polymerase IV 1 [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900251|gb|EFG79682.1| DNA polymerase IV 1 [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=529
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/465 (82%), Positives = 405/465 (88%), Gaps = 2/465 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 65 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 124
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYG+ASRRVFDTVR +VPVVEQLSFDE F EPP LAGA A VE F
Sbjct 125 LIGVTAVVLPPRGVVYGVASRRVFDTVRAVVPVVEQLSFDEGFGEPPHLAGASAAQVEAF 184
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVV AEE++LL GLPVRRLW
Sbjct 185 CEDLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVGRAEERSLLGGLPVRRLW 244
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKL+RLGIETIGQLAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 245 GIGPVAEEKLNRLGIETIGQLAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK 304
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFAVDLTT+EQL EAID IAEHAHQRLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 305 QISSESTFAVDLTTLEQLREAIDPIAEHAHQRLLRDGRGARTVTVKLKKSDMSTLTRSAT 364
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+ GAL VARRLL DP +IGPIRLLGVGFSGLSD+RQESLF D + ET+ H
Sbjct 365 LPYATTEPGALVAVARRLLLDPREIGPIRLLGVGFSGLSDVRQESLFPDLEFAGETSEQH 424
Query 361 YVETPGAVV--PAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART 418
VE + P A + WRVGDDV HP+LGHGWVQGAGHGVVTVRFETR SGPG ART
Sbjct 425 PVEAAAEAMFAPVAEAGSPWRVGDDVTHPQLGHGWVQGAGHGVVTVRFETRSSGPGPART 484
Query 419 FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
FP T +++ A+P+DSLDWPDY+G L + SAP DDV DR
Sbjct 485 FPAGTAELTQANPVDSLDWPDYLGALQALEADAPSAPPGDDVADR 529
>gi|240167929|ref|ZP_04746588.1| DNA polymerase IV [Mycobacterium kansasii ATCC 12478]
Length=465
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/465 (82%), Positives = 408/465 (88%), Gaps = 2/465 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 1 MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRGVVYGIASRRVFDTVR LVPVVEQLSFDEAF EPP L A AEDV TF
Sbjct 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRSLVPVVEQLSFDEAFGEPPHLGAATAEDVATF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C+ LRRRVR+ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR EEQ LL GLPVRRLW
Sbjct 121 CDALRRRVREETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRREEEQRLLHGLPVRRLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIET+GQLAAL+D E ANILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct 181 GIGPVAEEKLHRLGIETVGQLAALTDVEVANILGATVGPALHRLARGIDDRPVAERAEAK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA DLTT++QL EAID IAEHA+ RLLRDGRGART+TVKLKK+DM TLTRSAT
Sbjct 241 QISAESTFAADLTTLDQLREAIDPIAEHAYHRLLRDGRGARTVTVKLKKADMGTLTRSAT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA--A 358
MPY TT+AGAL VARRLL DP++IGPIRLLGVGFSGLS+++QESLF D DL+ + A A
Sbjct 301 MPYATTEAGALIAVARRLLLDPIEIGPIRLLGVGFSGLSEVQQESLFPDLDLSPDPAEEA 360
Query 359 AHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART 418
H T A D+ WR+GDDVAHPELGHGWVQGAGHGVVTVRFETR SGPG ART
Sbjct 361 QHDFPTLRAAQFGGPDSARWRIGDDVAHPELGHGWVQGAGHGVVTVRFETRRSGPGPART 420
Query 419 FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
FP+DTGD++ A+P+DSLDWPDY+ +L + G S P VDDVGDR
Sbjct 421 FPIDTGDLAVANPVDSLDWPDYVSRLRADEPIGVSPPAVDDVGDR 465
>gi|254821465|ref|ZP_05226466.1| DNA polymerase IV [Mycobacterium intracellulare ATCC 13950]
Length=466
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/464 (81%), Positives = 406/464 (88%), Gaps = 4/464 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A DVETF
Sbjct 66 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGASAADVETF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LRRRVRD+TGLIASVGAGSGKQIAKIASGLAKPDGIRVVR EE++LL GLPVRRLW
Sbjct 126 CEDLRRRVRDQTGLIASVGAGSGKQIAKIASGLAKPDGIRVVRRDEERSLLGGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIET+G+LAALSDAEAANILGATIGPALHRLARG+DDRPV ERAEAK
Sbjct 186 GIGPVAEEKLHRLGIETVGELAALSDAEAANILGATIGPALHRLARGVDDRPVAERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFAVDLT++EQL EAI+ IAEHAH RL+RDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 246 QISSESTFAVDLTSLEQLREAIEPIAEHAHHRLVRDGRGARTVTVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+ AL VARRLL DP +IGPIRLLGVGFSGLSD+RQESLF D +L Q +
Sbjct 306 LPYATTEVAALVGVARRLLLDPREIGPIRLLGVGFSGLSDVRQESLFPDLELPQPQPDSS 365
Query 361 YVETPGAVV-PAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
VET V+ + WRVGDDV H ELGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct 366 SVETATEVMFTKGPEEAGWRVGDDVVHRELGHGWVQGAGHGVVTARFETRTSGPGPARTF 425
Query 420 PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
P D+G+++ A+P+DSLDWPDY+G L + ASAP DDVGDR
Sbjct 426 PADSGELARANPVDSLDWPDYVGDLQTD---AASAPPADDVGDR 466
>gi|183982372|ref|YP_001850663.1| DNA polymerase IV, DinP_1 [Mycobacterium marinum M]
gi|183175698|gb|ACC40808.1| DNA polymerase IV, DinP_1 [Mycobacterium marinum M]
Length=470
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/464 (81%), Positives = 408/464 (88%), Gaps = 2/464 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTL GRPVLVGG+GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLMGRPVLVGGMGGRGVVAGASYEARVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRG VYG+ASRRVFDTVRGLVPVVEQLSFDEAF EPPQL GA +VE F
Sbjct 66 LIGVTAVVLPPRGAVYGVASRRVFDTVRGLVPVVEQLSFDEAFGEPPQLGGAATAEVEQF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVV EEQ LL GLPVRRLW
Sbjct 126 CEDLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVARQEEQLLLGGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIET+GQLAAL+DAE ANILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct 186 GIGPVAEEKLHRLGIETVGQLAALADAEVANILGATVGPALHRLARGIDDRPVAERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA+DLTT++QL +A+D IAEHAHQRLLRDGRG+RT+TVKLKK+DMSTLTRSAT
Sbjct 246 QISAESTFAIDLTTLDQLRDALDPIAEHAHQRLLRDGRGSRTVTVKLKKADMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA-AA 359
+PY TTD GAL +ARRLL DP+QIGPIRLLGVGFSGLS++RQESLF D DL ET+ A
Sbjct 306 LPYATTDVGALLALARRLLLDPVQIGPIRLLGVGFSGLSEVRQESLFPDLDLAAETSEEA 365
Query 360 HYVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART 418
H P + + +WR+GDDV H ELGHGWVQGAGHGVVTVRFETRGSGPG ART
Sbjct 366 HQDFHPSHGALSSTPAGAVWRIGDDVTHRELGHGWVQGAGHGVVTVRFETRGSGPGPART 425
Query 419 FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGD 462
FP++T DI+ A+P+DSLDWPD++GQL VE +A S P VDD+ D
Sbjct 426 FPIETSDITAANPVDSLDWPDFVGQLRVENAADTSTPAVDDLDD 469
>gi|41407346|ref|NP_960182.1| DNA polymerase IV [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395698|gb|AAS03565.1| DinX [Mycobacterium avium subsp. paratuberculosis K-10]
Length=463
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/464 (80%), Positives = 407/464 (88%), Gaps = 7/464 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A+DVE F
Sbjct 66 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAQDVEAF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct 126 CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 186 GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 246 QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+A AL VARRLL DP +IGPIRLLGVGFSGLS++RQESLF D ++ + +
Sbjct 306 LPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ 365
Query 361 YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
VET A+ HDA WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct 366 SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF 424
Query 420 PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
P D+ ++ A+P+DSLDWPDY VEG +SAP +DVG R
Sbjct 425 PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAEDVGGR 463
>gi|118617186|ref|YP_905518.1| DNA polymerase IV [Mycobacterium ulcerans Agy99]
gi|118569296|gb|ABL04047.1| DNA polymerase IV, DinP_1 [Mycobacterium ulcerans Agy99]
Length=473
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/464 (81%), Positives = 406/464 (88%), Gaps = 2/464 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTL GRPVLVGG+GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 9 VLHLDMDAFFASVEQLTRPTLMGRPVLVGGMGGRGVVAGASYEARVFGARSAMPMHQARR 68
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVVLPPRG VYG+ASRRVFDTVRGLVPVVEQLSFDEAF EPPQL GA +VE F
Sbjct 69 LIGVTAVVLPPRGAVYGVASRRVFDTVRGLVPVVEQLSFDEAFGEPPQLGGAATAEVEQF 128
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVV EEQ LL GLPVRRLW
Sbjct 129 CEDLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVARKEEQLLLGGLPVRRLW 188
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIET+GQLAAL+DAE ANILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct 189 GIGPVAEEKLHRLGIETVGQLAALADAEVANILGATVGPALHRLARGIDDRPVAERAEAK 248
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA+DLTT++QL +A+D IAEHAHQRLLRDGRG+RT+TVKLKK+DMSTLTRSAT
Sbjct 249 QISAESTFAIDLTTLDQLRDALDPIAEHAHQRLLRDGRGSRTVTVKLKKADMSTLTRSAT 308
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA-AA 359
+PY TTD GAL +ARRLL DP QIGPIRLLGVGFSGLS++RQESLF D DL ET+ A
Sbjct 309 LPYATTDVGALLALARRLLLDPAQIGPIRLLGVGFSGLSELRQESLFPDLDLAAETSEEA 368
Query 360 HYVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSART 418
H P + + +WR+GDDV H ELGHGWVQGAGHGVVTVRFETR SGPG ART
Sbjct 369 HKDFHPSHGALSSTPAGAVWRIGDDVTHRELGHGWVQGAGHGVVTVRFETRDSGPGPART 428
Query 419 FPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGD 462
FP++T DI+ A+P+DSLDWPD++GQL VE +A S P VDD+ D
Sbjct 429 FPIETSDITAANPVDSLDWPDFVGQLRVENAADTSTPAVDDLDD 472
>gi|118466313|ref|YP_882415.1| DNA polymerase IV [Mycobacterium avium 104]
gi|118167600|gb|ABK68497.1| DNA polymerase IV 1 [Mycobacterium avium 104]
Length=458
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/464 (80%), Positives = 407/464 (88%), Gaps = 7/464 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct 1 MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA AEDVE F
Sbjct 61 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAEDVEAF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct 121 CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 181 GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 241 QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+A AL VARRLL DP +IGPIRLLGVGFSGLS++RQESLF D ++ + +
Sbjct 301 LPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ 360
Query 361 YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
VET A+ HDA WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct 361 SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF 419
Query 420 PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
P D+ ++ A+P+DSLDWPDY VEG +SAP ++VG R
Sbjct 420 PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAENVGGR 458
>gi|254775682|ref|ZP_05217198.1| DNA polymerase IV [Mycobacterium avium subsp. avium ATCC 25291]
Length=463
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/464 (80%), Positives = 406/464 (88%), Gaps = 7/464 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A+DVE F
Sbjct 66 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAQDVEAF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct 126 CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 186 GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVTERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 246 QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+A AL VARRLL DP +IG IRLLGVGFSGLS++RQESLF D ++ + +
Sbjct 306 LPYATTEAAALVGVARRLLLDPREIGSIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ 365
Query 361 YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
VET A+ HDA WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct 366 SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF 424
Query 420 PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
P D+ ++ A+P+DSLDWPDY VEG +SAP +DVG R
Sbjct 425 PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAEDVGGR 463
>gi|336457942|gb|EGO36932.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Mycobacterium avium subsp. paratuberculosis S397]
Length=457
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/464 (80%), Positives = 406/464 (88%), Gaps = 8/464 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQA+R
Sbjct 1 MLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A+DVE F
Sbjct 61 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAQDVEAF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE+LRRRVR++TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL G PVRRLW
Sbjct 121 CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGG-PVRRLW 179
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGIETIG+LAAL+DAEAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 180 GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK 239
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFA DLTT+EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 240 QISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT 299
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+A AL VARRLL DP +IGPIRLLGVGFSGLS++RQESLF D ++ + +
Sbjct 300 LPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDLEMPAPQSDSQ 359
Query 361 YVETPG-AVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
VET A+ HDA WRVGDDVAHP+LGHGWVQGAGHGVVT RFETR SGPG ARTF
Sbjct 360 SVETAAEAMFGPGHDAG-WRVGDDVAHPDLGHGWVQGAGHGVVTARFETRTSGPGPARTF 418
Query 420 PVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
P D+ ++ A+P+DSLDWPDY VEG +SAP +DVG R
Sbjct 419 PADSAELVRANPVDSLDWPDY-----VEGLQESSAPPAEDVGGR 457
>gi|342860881|ref|ZP_08717531.1| DNA polymerase IV [Mycobacterium colombiense CECT 3035]
gi|342131905|gb|EGT85162.1| DNA polymerase IV [Mycobacterium colombiense CECT 3035]
Length=472
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/467 (79%), Positives = 401/467 (86%), Gaps = 4/467 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGG+GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGVGGRGVVAGASYEARVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVVLPPRGVVYG+ASRRVFDT+R +VPVVEQLSFDE F EP QLAGA A +VE F
Sbjct 66 LVGVSAVVLPPRGVVYGLASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGASAAEVEAF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LRRRVRD+TGLIASVGAGSGKQIAKIASGLAKPDG+RVVR AEE+ LL GLPVRRLW
Sbjct 126 CEDLRRRVRDDTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERLLLGGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEE+LHRLGIETIG+LAAL++ EAANILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 186 GIGPVAEERLHRLGIETIGELAALTEPEAANILGATIGPALHRLARGIDDRPVAERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+ESTFA DLT++EQL EAI+ IAEHAH RLLRDGRGART+TVKLKKSDMSTLTRSAT
Sbjct 246 QISSESTFAADLTSLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+ AL +ARRLL DP +IGPIRLLGVGFSGLSD+RQESLF D +L + +
Sbjct 306 LPYATTEVAALVGMARRLLLDPREIGPIRLLGVGFSGLSDVRQESLFPDLELAAPQSDSS 365
Query 361 YVETPGAVV----PAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSA 416
VET + P +A WRVGDDVAH ELGHGWVQGAGHGVVT RFETR +GPG A
Sbjct 366 SVETATEAMYGPGPQPAEAAGWRVGDDVAHRELGHGWVQGAGHGVVTARFETRSTGPGPA 425
Query 417 RTFPVDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDDVGDR 463
RTFP D GD+ A+P+DSLDWPDY G+L SAP DDVGDR
Sbjct 426 RTFPADGGDLVRANPIDSLDWPDYAGELQASEVRALSAPPGDDVGDR 472
>gi|161407222|ref|YP_640258.2| DNA polymerase IV [Mycobacterium sp. MCS]
Length=454
Score = 636 bits (1641), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 339/444 (77%), Positives = 380/444 (86%), Gaps = 1/444 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVHGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRGVVYG+ASRRVFDTVR LVPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct 66 LVGAPAVVLPPRGVVYGLASRRVFDTVRTLVPVLEQLSFDEAFGEPQELAGASAADVEEF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR RV +ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR A+E+ LL L VR+LW
Sbjct 126 CELLRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE+KLHRLGIETIGQLAALS+AE A+ILGAT+GPALHRLARGID+RPV ERAEAK
Sbjct 186 GIGPVAEDKLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDERPVAERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF DL T++Q+ EAI IA+HAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct 246 QISAESTFPADLITLDQVREAIGPIADHAHRRLAKDGRGARTVTVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P TTDA L ARRLL DP++IGPIRL+GVGFSGLS++RQESLF D +L ++ A
Sbjct 306 LPSATTDAATLSATARRLLVDPVEIGPIRLVGVGFSGLSEVRQESLFPDLELVEDEPATR 365
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
P +V AA WRVGDDVAHPELGHGW+QGAGHGV+T+RFETR +GPG A+TFP
Sbjct 366 PA-VPMSVSEAAAVPPAWRVGDDVAHPELGHGWIQGAGHGVMTIRFETRSTGPGPAKTFP 424
Query 421 VDTGDISNASPLDSLDWPDYIGQL 444
D+ A+P+DSLDW DY+ L
Sbjct 425 DTVPDVVRANPVDSLDWADYVDAL 448
>gi|119869187|ref|YP_939139.1| DNA polymerase IV [Mycobacterium sp. KMS]
gi|108770480|gb|ABG09202.1| DNA-directed DNA polymerase [Mycobacterium sp. MCS]
gi|119695276|gb|ABL92349.1| DNA-directed DNA polymerase [Mycobacterium sp. KMS]
Length=452
Score = 636 bits (1641), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 339/444 (77%), Positives = 380/444 (86%), Gaps = 1/444 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 4 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVHGARSAMPMHQARR 63
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRGVVYG+ASRRVFDTVR LVPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct 64 LVGAPAVVLPPRGVVYGLASRRVFDTVRTLVPVLEQLSFDEAFGEPQELAGASAADVEEF 123
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR RV +ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR A+E+ LL L VR+LW
Sbjct 124 CELLRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLW 183
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE+KLHRLGIETIGQLAALS+AE A+ILGAT+GPALHRLARGID+RPV ERAEAK
Sbjct 184 GIGPVAEDKLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDERPVAERAEAK 243
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF DL T++Q+ EAI IA+HAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct 244 QISAESTFPADLITLDQVREAIGPIADHAHRRLAKDGRGARTVTVKLKKSDMSTLTRSAT 303
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P TTDA L ARRLL DP++IGPIRL+GVGFSGLS++RQESLF D +L ++ A
Sbjct 304 LPSATTDAATLSATARRLLVDPVEIGPIRLVGVGFSGLSEVRQESLFPDLELVEDEPATR 363
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
P +V AA WRVGDDVAHPELGHGW+QGAGHGV+T+RFETR +GPG A+TFP
Sbjct 364 PA-VPMSVSEAAAVPPAWRVGDDVAHPELGHGWIQGAGHGVMTIRFETRSTGPGPAKTFP 422
Query 421 VDTGDISNASPLDSLDWPDYIGQL 444
D+ A+P+DSLDW DY+ L
Sbjct 423 DTVPDVVRANPVDSLDWADYVDAL 446
>gi|126435694|ref|YP_001071385.1| DNA polymerase IV [Mycobacterium sp. JLS]
gi|126235494|gb|ABN98894.1| DNA-directed DNA polymerase [Mycobacterium sp. JLS]
Length=452
Score = 636 bits (1640), Expect = 3e-180, Method: Compositional matrix adjust.
Identities = 339/444 (77%), Positives = 379/444 (86%), Gaps = 1/444 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 4 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVHGARSAMPMHQARR 63
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRGVVYG+ASRRVFDTVR LVPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct 64 LVGAPAVVLPPRGVVYGLASRRVFDTVRTLVPVLEQLSFDEAFGEPQELAGASAADVEEF 123
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR RV +ETGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR A+E+ LL L VR+LW
Sbjct 124 CELLRARVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLW 183
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE++LHRLGIETIGQLAALS+AE A+ILGAT+GPALHRLARGIDDRPV ERAEAK
Sbjct 184 GIGPVAEDRLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDDRPVAERAEAK 243
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF DL T++Q+ EAI IA+HAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct 244 QISAESTFPADLITLDQVREAIGPIADHAHRRLAKDGRGARTVTVKLKKSDMSTLTRSAT 303
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P TTDA L ARRLL DP +IGPIRL+GVGFSGLS++RQESLF D +L ++ A
Sbjct 304 LPSATTDAATLSATARRLLVDPAEIGPIRLVGVGFSGLSEVRQESLFPDLELVEDELATR 363
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
P +V AA WRVGDDVAHPELGHGW+QGAGHGV+T+RFETR +GPG A+TFP
Sbjct 364 PA-VPMSVSEAAAVPPAWRVGDDVAHPELGHGWIQGAGHGVMTIRFETRSTGPGPAKTFP 422
Query 421 VDTGDISNASPLDSLDWPDYIGQL 444
D+ A+P+DSLDW DY+ L
Sbjct 423 DTVPDVVRANPVDSLDWADYVDAL 446
>gi|118473834|ref|YP_887486.1| DNA polymerase IV [Mycobacterium smegmatis str. MC2 155]
gi|118175121|gb|ABK76017.1| DNA polymerase IV 1 [Mycobacterium smegmatis str. MC2 155]
Length=463
Score = 633 bits (1633), Expect = 2e-179, Method: Compositional matrix adjust.
Identities = 340/446 (77%), Positives = 377/446 (85%), Gaps = 3/446 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR YGARSAMPMHQARR
Sbjct 14 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARRYGARSAMPMHQARR 73
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG VYG+ASRR DTVR +VPV+EQLSFDEAF EP +LAGA A DVE F
Sbjct 74 LVGAPAVVLPPRGAVYGVASRRALDTVRSVVPVLEQLSFDEAFGEPSELAGAEAADVEAF 133
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLR +V + TGL+ASVGAGSGKQIAKIASGLAKPDGIRVVR EE LL GLPVR+LW
Sbjct 134 CERLRAKVLEHTGLVASVGAGSGKQIAKIASGLAKPDGIRVVRREEEAVLLHGLPVRKLW 193
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE++LHR+GIETIG AAL++AEAAN+LG+TIGPALHRLARGIDDRPV ERAEAK
Sbjct 194 GIGPVAEDRLHRIGIETIGAFAALTEAEAANVLGSTIGPALHRLARGIDDRPVAERAEAK 253
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF DLTT+ QL +AI I EHAH+RL +DGRGART+TVKLKKSDMSTLTRSAT
Sbjct 254 QISAESTFPEDLTTLAQLQDAIVPIGEHAHRRLEKDGRGARTVTVKLKKSDMSTLTRSAT 313
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETA-AA 359
+ Y TT+A L ARRLL DP++IGPIRL+GVGFSGLSDIRQESLF D + +E AA
Sbjct 314 LAYATTEASTLIGTARRLLLDPVEIGPIRLVGVGFSGLSDIRQESLFPDLEQPEEFPDAA 373
Query 360 HYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
VE+ + T WRVGDDVAH ELGHGWVQGAGHGV+TVRFETR SGPG ARTF
Sbjct 374 PQVES--VQTGPSSPTTQWRVGDDVAHTELGHGWVQGAGHGVMTVRFETRASGPGPARTF 431
Query 420 PVDTGDISNASPLDSLDWPDYIGQLS 445
P D+ +IS A P+DSLDW +Y+ L+
Sbjct 432 PEDSPEISRADPVDSLDWAEYLSSLA 457
>gi|333990828|ref|YP_004523442.1| DNA polymerase IV [Mycobacterium sp. JDM601]
gi|333486796|gb|AEF36188.1| DNA polymerase IV DinP_1 [Mycobacterium sp. JDM601]
Length=451
Score = 618 bits (1594), Expect = 7e-175, Method: Compositional matrix adjust.
Identities = 342/440 (78%), Positives = 374/440 (85%), Gaps = 2/440 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG VYG+ASRRVF+TVR ++PVVEQLSFDEAF EP +L+GA +EDV F
Sbjct 66 LVGAPAVVLPPRGAVYGVASRRVFETVRAVIPVVEQLSFDEAFGEPAELSGAGSEDVHRF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CERLRRRVRDETGL+ASVGAGSGKQIAKIAS LAKPDG+RVV AEE+ LL GLPVRRLW
Sbjct 126 CERLRRRVRDETGLVASVGAGSGKQIAKIASDLAKPDGVRVVTRAEERLLLDGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGI TIG AAL+D+E A+ILGATIGPALHRLARGIDDRPV ERAEAK
Sbjct 186 GIGPVAEEKLHRLGITTIGAFAALTDSEVADILGATIGPALHRLARGIDDRPVAERAEAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA DLTT+EQL + I EHA++RLLRDGRGART+TVKLKK+DMS LTRSAT
Sbjct 246 QISAESTFATDLTTLEQLRAEVGPIGEHAYRRLLRDGRGARTVTVKLKKADMSVLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TTDA AL A RLL DP QIGPIRLLGVGFSGL+D+RQESLF + + ++ AAA
Sbjct 306 LPYATTDAAALTAAAGRLLLDPAQIGPIRLLGVGFSGLTDVRQESLFPELEFSE--AAAD 363
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
ETP + A WRVGDDV H ELGHGWVQG+GHGVVTVRFETR SGPG RTF
Sbjct 364 SPETPALQPVSPSIAASWRVGDDVTHVELGHGWVQGSGHGVVTVRFETRSSGPGPVRTFA 423
Query 421 VDTGDISNASPLDSLDWPDY 440
VD I+ A P+ SLDWPDY
Sbjct 424 VDEPGITRADPVASLDWPDY 443
>gi|145224226|ref|YP_001134904.1| DNA polymerase IV [Mycobacterium gilvum PYR-GCK]
gi|315444560|ref|YP_004077439.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Mycobacterium sp. Spyr1]
gi|145216712|gb|ABP46116.1| DNA-directed DNA polymerase [Mycobacterium gilvum PYR-GCK]
gi|315262863|gb|ADT99604.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Mycobacterium sp. Spyr1]
Length=455
Score = 608 bits (1567), Expect = 9e-172, Method: Compositional matrix adjust.
Identities = 327/446 (74%), Positives = 367/446 (83%), Gaps = 1/446 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYE+R +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYESRVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRGVVYG+ASRRVF+TVR VPV+EQLSFDEAF EP LAGA A +V F
Sbjct 66 LVGAGAVVLPPRGVVYGLASRRVFETVRARVPVLEQLSFDEAFGEPVALAGASAGEVADF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C+ LR V TGL+ASVGAGSGKQIAKIASGLAKPDG+ V+ HA+E+ALL LPVRRLW
Sbjct 126 CQALRAEVTAVTGLVASVGAGSGKQIAKIASGLAKPDGVTVIAHADERALLDDLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKLHRLGI+TIG AAL+D E ANILG T+GPALHRLARGIDDRPV E A AK
Sbjct 186 GIGPVAEEKLHRLGIDTIGGFAALADTEVANILGPTVGPALHRLARGIDDRPVTENAPAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF DLTT+ QL +A I EHAH+RLL+DGRGART+TVKLKKSDMSTLTRSAT
Sbjct 246 QISAESTFPEDLTTLRQLRDAAAPIGEHAHRRLLKDGRGARTVTVKLKKSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD-SDLTQETAAA 359
+PY TTDAG L A RLL DP+ IGPIRL+G+GFSGLSDI+QESLF + T E +
Sbjct 306 LPYATTDAGTLIATAHRLLLDPVDIGPIRLVGIGFSGLSDIQQESLFPELESATTEELTS 365
Query 360 HYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
+ A+H WRVGDDV+H E GHGWVQGAGHGV+TVRFETRG+GPG ARTF
Sbjct 366 LGPLSSPLSSAASHVEPAWRVGDDVSHTEFGHGWVQGAGHGVMTVRFETRGTGPGPARTF 425
Query 420 PVDTGDISNASPLDSLDWPDYIGQLS 445
D +S A+P+DSLDWPDY+ +++
Sbjct 426 REDDPALSRANPVDSLDWPDYVAEMT 451
>gi|120403755|ref|YP_953584.1| DNA polymerase IV [Mycobacterium vanbaalenii PYR-1]
gi|119956573|gb|ABM13578.1| DNA-directed DNA polymerase [Mycobacterium vanbaalenii PYR-1]
Length=453
Score = 598 bits (1542), Expect = 6e-169, Method: Compositional matrix adjust.
Identities = 322/445 (73%), Positives = 370/445 (84%), Gaps = 3/445 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGG+GGRGVVAGASYE+R +GARSAMPM QA+R
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGVGGRGVVAGASYESRVFGARSAMPMLQAKR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRGVVYG ASRRVF+TVR LVPV+EQLSFDEAF EP LAGA +VE F
Sbjct 66 LVGAAAVVLPPRGVVYGTASRRVFETVRTLVPVLEQLSFDEAFGEPTDLAGAAEPEVEAF 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C LR RV TGL+ASVGAGSGKQ+AKIASGLAKPDGIRV+ EE LL+GLPVRRLW
Sbjct 126 CAELRSRVLAVTGLVASVGAGSGKQVAKIASGLAKPDGIRVIDRDEEATLLAGLPVRRLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE++LHRLGIETIG LAALS+AE ANILGAT+GPALHRLARG+DDRPV E A AK
Sbjct 186 GIGPVAEDRLHRLGIETIGALAALSEAEVANILGATVGPALHRLARGVDDRPVAENAPAK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA DLTT+ QL EAI I +HAH+RL +DGRGART+TVKLK+SDMSTLTRSAT
Sbjct 246 QISAESTFAQDLTTIAQLREAIGPIGDHAHKRLTKDGRGARTVTVKLKRSDMSTLTRSAT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+A L ARRLL DP++IGP+RL+GVGFSGLS ++QE LF D + ++T+
Sbjct 306 LPYATTEATTLIGTARRLLLDPVEIGPVRLVGVGFSGLSQVQQEPLFPDLETVEQTSDD- 364
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
P + A A WRVGDDVAH + GHGWVQGAGHGV+TVRFETRG+GPG ARTF
Sbjct 365 --AAPVTLADVAATAPAWRVGDDVAHTDHGHGWVQGAGHGVMTVRFETRGTGPGPARTFR 422
Query 421 VDTGDISNASPLDSLDWPDYIGQLS 445
D ++ A+P+DSLDWPD++ +++
Sbjct 423 ADDPALTRANPVDSLDWPDFVEEMA 447
>gi|169629787|ref|YP_001703436.1| DNA polymerase IV [Mycobacterium abscessus ATCC 19977]
gi|169241754|emb|CAM62782.1| DNA polymerase IV family [Mycobacterium abscessus]
Length=459
Score = 576 bits (1485), Expect = 3e-162, Method: Compositional matrix adjust.
Identities = 311/459 (68%), Positives = 356/459 (78%), Gaps = 15/459 (3%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGG GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 8 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGTGGRGVVAGASYEARVFGARSAMPMHQARR 67
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G+ AVVLPPRG VYG+ASRRVF+TVR ++P++EQLSFDEAF EP +L GA V +
Sbjct 68 LVGINAVVLPPRGSVYGVASRRVFETVRSMIPILEQLSFDEAFGEPSELFGATTSAVADY 127
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
LR RV ETGL ASVGAGSGKQIAKIASGLAKPDG+R++ EE+ LL LPVR+LW
Sbjct 128 IHELRSRVLGETGLTASVGAGSGKQIAKIASGLAKPDGVRIIAPEEERTLLDELPVRKLW 187
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEE+L+RLGI TIGQ AAL +EAA++LG TIGPALH+LARG+DDRPV ERAE K
Sbjct 188 GIGPVAEERLNRLGINTIGQFAALQTSEAASVLGGTIGPALHQLARGVDDRPVAERAETK 247
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF DLTT++QL +AI+ I HAH+RL++ GRG RT+TVKL++SDMS LTRSAT
Sbjct 248 QISAESTFPDDLTTLDQLRQAIEPIGVHAHRRLIKHGRGVRTVTVKLRRSDMSILTRSAT 307
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TT+ L + ARRLL DP++IGPIRL+GVGFSG SD++Q SLF D D Q A
Sbjct 308 LPYATTERAVLMSAARRLLLDPVEIGPIRLVGVGFSGFSDVQQTSLFPDLD--QAEPVAE 365
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
E P P H W VGDDV H E GHGW+QG GHGV+TVRFETR SGPG ARTF
Sbjct 366 SDEVPSTAEP-THSTAGWGVGDDVDHAEFGHGWIQGTGHGVMTVRFETRSSGPGIARTFA 424
Query 421 VDTGDISNASPLDSLDWPDYIGQLSVEGSAGASAPTVDD 459
VD I+ A P+ SLDWP G SA VDD
Sbjct 425 VDDPGIARADPVASLDWP------------GESAEPVDD 451
>gi|333920349|ref|YP_004493930.1| DNA polymerase IV 1 [Amycolicicoccus subflavus DQS3-9A1]
gi|333482570|gb|AEF41130.1| DNA polymerase IV 1 [Amycolicicoccus subflavus DQS3-9A1]
Length=439
Score = 537 bits (1383), Expect = 2e-150, Method: Compositional matrix adjust.
Identities = 281/440 (64%), Positives = 336/440 (77%), Gaps = 3/440 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFA+VEQLTRPTLRGRPVLVGG G RGVVAGASYEAR +GARSAMPMH ARR
Sbjct 1 MLHLDMDAFFAAVEQLTRPTLRGRPVLVGGTGSRGVVAGASYEARPFGARSAMPMHMARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIGVTAVV+PPRGVVY AS+RVF VR ++PV+EQLS DEAF EP QLAGA A VE F
Sbjct 61 LIGVTAVVVPPRGVVYRAASKRVFAVVRDMIPVIEQLSLDEAFGEPAQLAGATAPVVEEF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C LR RV TGL ASVGAGSGKQ+AKIASGLAKP G R+V +++ALL+ LPVR+LW
Sbjct 121 CTELRARVFAVTGLDASVGAGSGKQVAKIASGLAKPRGQRIVSRNDQKALLAPLPVRKLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE++L +G+ETIG LA LS +EA +LG ++GPAL LA+GIDDRPV E A AK
Sbjct 181 GIGPVAEQRLRSMGVETIGDLARLSASEANALLG-SMGPALRALAQGIDDRPVKEGAAAK 239
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+TF DL + ++ A+ ++ E AH+RL DGRGART+TVKL+K+DMS LTRSAT
Sbjct 240 QVSAETTFPRDLMSKPEVRSAVQTVGESAHRRLASDGRGARTVTVKLRKADMSILTRSAT 299
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P+ T AL A++L DP++IGPIRL+GV +SGLS +QE LF + T
Sbjct 300 LPFATASRDALIGAAQKLAMDPVEIGPIRLVGVSYSGLSSAQQEVLFPEIG-TTANEMDQ 358
Query 361 YVETPGAVVPA-AHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
ETP A A A + + G DV HP+ GHGWVQG+GHGVVTVRFETR SGPG +TF
Sbjct 359 VTETPHASSDAPATEGDQFPPGADVHHPKFGHGWVQGSGHGVVTVRFETRTSGPGPVKTF 418
Query 420 PVDTGDISNASPLDSLDWPD 439
P+ D+++A PL SLDWPD
Sbjct 419 PMPAEDLTHADPLVSLDWPD 438
>gi|161598445|ref|YP_117989.2| DNA polymerase IV [Nocardia farcinica IFM 10152]
Length=455
Score = 525 bits (1351), Expect = 8e-147, Method: Compositional matrix adjust.
Identities = 285/438 (66%), Positives = 336/438 (77%), Gaps = 3/438 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFASVEQLTRPTLRGRPVLVGG G RGVVAGASYEAR YGARSAMPMHQA+R
Sbjct 17 VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTGARGVVAGASYEARVYGARSAMPMHQAKR 76
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVV+PPRG VY S RVF+ +R +PV+E LSFDEAF EP +LAGA V F
Sbjct 77 LVGVSAVVVPPRGAVYAEMSGRVFEALRSRIPVLETLSFDEAFGEPAELAGASVARVHEF 136
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C LR VR+ TGL+ASVGAG+GKQ+AKIASGLAKPDGIRVV AE+Q LL+ LPVR LW
Sbjct 137 CAELRALVRERTGLVASVGAGTGKQLAKIASGLAKPDGIRVVSPAEQQRLLAALPVRTLW 196
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE +L LGIET+G AAL ++EA ++LG +IG ALHRLARGIDDRPV ERAEAK
Sbjct 197 GIGPVAEGRLRTLGIETVGAFAALPESEAVSLLGGSIGAALHRLARGIDDRPVTERAEAK 256
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAE+T+ D+ TM L +AID++A AH+RL DGR ART+ +KLK+SDMS +TRS+T
Sbjct 257 QISAENTYETDIVTMAALRQAIDAMAAAAHRRLGNDGRAARTVVLKLKRSDMSIVTRSST 316
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD---LTQETA 357
+PY TTD AL A+R DP+++GPIRL+GVG++GLS +RQESLF + D + ++ A
Sbjct 317 LPYATTDLAALTAAAQRSAIDPVELGPIRLVGVGYAGLSAVRQESLFPELDRAPVDEDAA 376
Query 358 AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR 417
A V +W G DVAHPE GHGWVQGAGHGVVTVRFET +GPG AR
Sbjct 377 VEPAEPAAPAPVADPAAVRIWYPGMDVAHPEYGHGWVQGAGHGVVTVRFETSSTGPGPAR 436
Query 418 TFPVDTGDISNASPLDSL 435
TF D +S A PL SL
Sbjct 437 TFSADDISLSRADPLGSL 454
>gi|54015255|dbj|BAD56625.1| putative DNA polymerase IV family protein [Nocardia farcinica
IFM 10152]
Length=463
Score = 524 bits (1350), Expect = 1e-146, Method: Compositional matrix adjust.
Identities = 285/438 (66%), Positives = 336/438 (77%), Gaps = 3/438 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFASVEQLTRPTLRGRPVLVGG G RGVVAGASYEAR YGARSAMPMHQA+R
Sbjct 25 VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTGARGVVAGASYEARVYGARSAMPMHQAKR 84
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+GV+AVV+PPRG VY S RVF+ +R +PV+E LSFDEAF EP +LAGA V F
Sbjct 85 LVGVSAVVVPPRGAVYAEMSGRVFEALRSRIPVLETLSFDEAFGEPAELAGASVARVHEF 144
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C LR VR+ TGL+ASVGAG+GKQ+AKIASGLAKPDGIRVV AE+Q LL+ LPVR LW
Sbjct 145 CAELRALVRERTGLVASVGAGTGKQLAKIASGLAKPDGIRVVSPAEQQRLLAALPVRTLW 204
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE +L LGIET+G AAL ++EA ++LG +IG ALHRLARGIDDRPV ERAEAK
Sbjct 205 GIGPVAEGRLRTLGIETVGAFAALPESEAVSLLGGSIGAALHRLARGIDDRPVTERAEAK 264
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAE+T+ D+ TM L +AID++A AH+RL DGR ART+ +KLK+SDMS +TRS+T
Sbjct 265 QISAENTYETDIVTMAALRQAIDAMAAAAHRRLGNDGRAARTVVLKLKRSDMSIVTRSST 324
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD---LTQETA 357
+PY TTD AL A+R DP+++GPIRL+GVG++GLS +RQESLF + D + ++ A
Sbjct 325 LPYATTDLAALTAAAQRSAIDPVELGPIRLVGVGYAGLSAVRQESLFPELDRAPVDEDAA 384
Query 358 AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR 417
A V +W G DVAHPE GHGWVQGAGHGVVTVRFET +GPG AR
Sbjct 385 VEPAEPAAPAPVADPAAVRIWYPGMDVAHPEYGHGWVQGAGHGVVTVRFETSSTGPGPAR 444
Query 418 TFPVDTGDISNASPLDSL 435
TF D +S A PL SL
Sbjct 445 TFSADDISLSRADPLGSL 462
>gi|296140331|ref|YP_003647574.1| DNA-directed DNA polymerase [Tsukamurella paurometabola DSM 20162]
gi|296028465|gb|ADG79235.1| DNA-directed DNA polymerase [Tsukamurella paurometabola DSM 20162]
Length=466
Score = 522 bits (1345), Expect = 5e-146, Method: Compositional matrix adjust.
Identities = 291/443 (66%), Positives = 330/443 (75%), Gaps = 8/443 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH DMDAFFAS EQLTRPTLRGRPVLVGGLGGRGVVAG SYEAR YGARSAMPMHQARR
Sbjct 17 VLHFDMDAFFASCEQLTRPTLRGRPVLVGGLGGRGVVAGCSYEARVYGARSAMPMHQARR 76
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG +YG SRRVF TVR L+PVVE LSFDEAF EP +LAGA + +V F
Sbjct 77 LVGAPAVVLPPRGALYGTVSRRVFATVRELIPVVETLSFDEAFGEPAELAGASSAEVVAF 136
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
E LR R+R TGLIASVGAG+GKQ AKIASGLAKPDG+ V+ A ++ +L LPVR+LW
Sbjct 137 AEELRARIRAATGLIASVGAGAGKQAAKIASGLAKPDGVSVIPPAAQETVLYPLPVRKLW 196
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVA E+L RLGIETIGQ AA+S+ E ++LG T+GPALHRLARG DDRP+ R AK
Sbjct 197 GIGPVAGERLSRLGIETIGQFAAMSEVEVVSVLGVTLGPALHRLARGQDDRPIETRTGAK 256
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
ISAE T VD+TTM L ID AEHA +RL +DGRGART+ +KLK+SDMS LTRSAT
Sbjct 257 SISAEHTLEVDVTTMNALRREIDRSAEHAVRRLRKDGRGARTVVLKLKRSDMSILTRSAT 316
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF-----ADSDLTQE 355
+P TTDA L A+RL DP++IG +RL+GVGFSGLS + Q +LF A
Sbjct 317 LPSATTDAAVLTATAQRLALDPVEIGGLRLVGVGFSGLSSVEQFTLFGDEAPAAEAAPVV 376
Query 356 TAAAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGS 415
A VET AA WR G DV HPE GHGWVQGAGHGV++VRFETR SGPG
Sbjct 377 ADGADVVETTD---DAAEPVVGWRTGMDVRHPEFGHGWVQGAGHGVLSVRFETRESGPGR 433
Query 416 ARTFPVDTGDISNASPLDSLDWP 438
R+F D D+ A PLDSLDWP
Sbjct 434 MRSFRADDPDLREADPLDSLDWP 456
>gi|226360219|ref|YP_002777997.1| DNA polymerase IV [Rhodococcus opacus B4]
gi|226238704|dbj|BAH49052.1| DNA polymerase IV [Rhodococcus opacus B4]
Length=449
Score = 511 bits (1317), Expect = 7e-143, Method: Compositional matrix adjust.
Identities = 283/443 (64%), Positives = 336/443 (76%), Gaps = 8/443 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG +YG+ S+ VFD +RG +PV+EQLS DEAF EP +LAGA A V+ +
Sbjct 66 LVGPGAVVLPPRGRLYGMLSKSVFDALRGPMPVLEQLSMDEAFGEPTELAGADAAAVQRY 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR V +ETGL+AS+GAGSGKQ+AKIASGLAKPDGI V+ E+ A+L LPVR+LW
Sbjct 126 CEGLRALVLEETGLVASIGAGSGKQVAKIASGLAKPDGITVISPDEQHAVLDELPVRKLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKL RLGIETIG A ++E A+ILG TIGP LHRLA+G+D+RPV ERAE+K
Sbjct 186 GIGPVAEEKLKRLGIETIGGFARTPESEVASILGTTIGPGLHRLAQGVDNRPVAERAESK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+TFA D+ TM +L A+++ A A RL +DGR ART+ +KLKK+DMS +TRS T
Sbjct 246 QVSAETTFATDIVTMAELRGAVEASAASAFVRLQKDGRAARTVVLKLKKADMSIVTRSVT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDL----TQET 356
+PY T D L A+R + DP+++GP+RL+GVGF+GLS +RQ SLF + DL QE+
Sbjct 306 LPYATLDRQILVAAAQRQVIDPIELGPVRLVGVGFAGLSTVRQGSLFPELDLDVPGYQES 365
Query 357 AAAHYVETPGAVVPAAHDA----TMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSG 412
G VP A T W G DV HP+ GHGWVQGAGHGVVTVRFETR +G
Sbjct 366 KITEAGGDDGLAVPVPAPARAIDTRWHPGLDVTHPDFGHGWVQGAGHGVVTVRFETRTTG 425
Query 413 PGSARTFPVDTGDISNASPLDSL 435
PG ARTF D G + A SL
Sbjct 426 PGKARTFKEDDGQLDTADVEGSL 448
>gi|111018090|ref|YP_701062.1| DNA polymerase IV [Rhodococcus jostii RHA1]
gi|110817620|gb|ABG92904.1| DNA polymerase IV [Rhodococcus jostii RHA1]
Length=449
Score = 511 bits (1316), Expect = 1e-142, Method: Compositional matrix adjust.
Identities = 284/444 (64%), Positives = 337/444 (76%), Gaps = 8/444 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 65
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG +YG+ S+ VFD +RG +PV+EQLS DEAF EP +LAGA A V+ +
Sbjct 66 LVGPGAVVLPPRGRLYGMLSKSVFDALRGPMPVLEQLSMDEAFGEPIELAGADAGTVQRY 125
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR V +ETGL+AS+GAGSGKQ+AKIASGLAKP+GI V+ E+ A+L LPVR+LW
Sbjct 126 CEGLRALVLEETGLVASIGAGSGKQVAKIASGLAKPNGITVIPPDEQHAVLDELPVRKLW 185
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKL RLGIETIG A ++E A+ILG T+GP LHRLA+GID+RPV ERAE+K
Sbjct 186 GIGPVAEEKLKRLGIETIGGFARTPESEVASILGTTVGPGLHRLAQGIDNRPVAERAESK 245
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+TFA D+ TM +L A++S A A RL +DGR ART+ +KLKK+DMS +TRS T
Sbjct 246 QVSAETTFATDIVTMAELRGAVESSAASAFVRLQKDGRAARTVVLKLKKADMSVVTRSVT 305
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY T D L A+R + DPL++GP+RL+GVGF+GLS +RQ SLF + DL
Sbjct 306 LPYATLDRQILVAAAQRQVIDPLELGPVRLVGVGFAGLSTVRQGSLFPELDLDVPGYQES 365
Query 361 YVETPG------AVVPAAHDA--TMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSG 412
+ G A VPA A T W G DV HP+ GHGWVQGAGHGVVTVRFETR +G
Sbjct 366 KITVAGADDGLSAPVPAPARAIDTRWHPGLDVTHPDFGHGWVQGAGHGVVTVRFETRTTG 425
Query 413 PGSARTFPVDTGDISNASPLDSLD 436
PG ARTF VD + A SL+
Sbjct 426 PGKARTFKVDDAQLERADVEGSLE 449
>gi|262202895|ref|YP_003274103.1| DNA-directed DNA polymerase [Gordonia bronchialis DSM 43247]
gi|262086242|gb|ACY22210.1| DNA-directed DNA polymerase [Gordonia bronchialis DSM 43247]
Length=449
Score = 506 bits (1304), Expect = 2e-141, Method: Compositional matrix adjust.
Identities = 287/441 (66%), Positives = 336/441 (77%), Gaps = 4/441 (0%)
Query 2 LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARRL 61
+HLDMDAFFASVEQLTRPTLRGRPVLVGG GGRGVVAGASYEARA+GA SAMPMHQARRL
Sbjct 1 MHLDMDAFFASVEQLTRPTLRGRPVLVGGTGGRGVVAGASYEARAFGAGSAMPMHQARRL 60
Query 62 IGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETFC 121
+G TAVV+PPRG VY + S R+F VR VPV+E LSFDEAFAEP +LAGA A F
Sbjct 61 VGPTAVVVPPRGSVYRVVSSRIFALVRRAVPVIEMLSFDEAFAEPAELAGAPASAAADFA 120
Query 122 ERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLWG 181
ER+R +RDE GL ASVG GSGKQIAKIASG AKPDG+ V+ + E A L LPVR+LWG
Sbjct 121 ERIRGIIRDEVGLAASVGFGSGKQIAKIASGQAKPDGVMVIPPSAELAFLHELPVRKLWG 180
Query 182 IGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAKQ 241
IGPV+ +KL RLGI+TIG LAA++ E +++LGAT+GPALHRLA+GID+RPV ERA AKQ
Sbjct 181 IGPVSGDKLSRLGIDTIGDLAAMAPVEVSSVLGATVGPALHRLAQGIDERPVTERASAKQ 240
Query 242 ISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSATM 301
ISAESTFA D+ + +L +AID A AH+RLL DGRGART+ VKLK+SDMS LTRSAT+
Sbjct 241 ISAESTFAADIVDLPELRQAIDKAAADAHRRLLADGRGARTVVVKLKRSDMSVLTRSATL 300
Query 302 PYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD--SDLTQETAAA 359
P TTD L A+RL DP IGPIRL+GVG+SGLS ++Q +LF D D ++A
Sbjct 301 PTATTDLDELDRAAQRLALDPRSIGPIRLVGVGYSGLSSVQQYALFGDPVDDAIAQSAVV 360
Query 360 HYVETPGAVVPAAHDATMWRV--GDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR 417
+T A D + R+ G DV HPE GHGWVQG+GHGVVTVRFETR +GPG R
Sbjct 361 SSRDTSAPDDAVAEDVSSSRLVAGRDVRHPEFGHGWVQGSGHGVVTVRFETRTTGPGRTR 420
Query 418 TFPVDTGDISNASPLDSLDWP 438
TF VD ++ A PLDSL+WP
Sbjct 421 TFAVDDPLLTLADPLDSLEWP 441
>gi|312140131|ref|YP_004007467.1| DNA polymerase iv [Rhodococcus equi 103S]
gi|311889470|emb|CBH48787.1| DNA polymerase IV [Rhodococcus equi 103S]
Length=447
Score = 501 bits (1291), Expect = 8e-140, Method: Compositional matrix adjust.
Identities = 283/436 (65%), Positives = 335/436 (77%), Gaps = 3/436 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GA SAMPMHQARR
Sbjct 13 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGAHSAMPMHQARR 72
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG +YG SR+VFD +R +PV+EQLS DEAF EP +LAG +VE +
Sbjct 73 LVGPAAVVLPPRGSLYGHVSRQVFDALRVRMPVLEQLSMDEAFGEPAELAGVGKAEVERY 132
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR V ETGL+AS+GAG+GKQ+AKIASGLAKP+G+ VV + L+S LPVR+LW
Sbjct 133 CEELRALVLAETGLVASIGAGAGKQVAKIASGLAKPNGVTVVSPDVQHQLMSALPVRKLW 192
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPVAEEKL RLGI+TIG LAAL DAE ++LG TIGP+LHRLARGIDDRPV ERA+AK
Sbjct 193 GVGPVAEEKLKRLGIDTIGALAALPDAEVVSVLGGTIGPSLHRLARGIDDRPVAERADAK 252
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+T+A D+ T+ L A+D+ A AH+RL RDGR ART+ +KL+KSDMS +TRS T
Sbjct 253 QVSAETTYAEDIVTLAGLRRAVDASAAAAHRRLDRDGRAARTVVLKLRKSDMSIVTRSLT 312
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TTD L A+R + DPL++GPIRL+GVGF GLS + Q SLF + D Q A
Sbjct 313 LPYATTDLQILTATAQRQVIDPLELGPIRLVGVGFGGLSAVSQGSLFPELD--QAVPAED 370
Query 361 YVETPGAVVPAAHDATM-WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
V A+ D T+ WR G DV+HPE GHGWVQGAGHGVVTVRFETR +G G +RTF
Sbjct 371 DVAEADAIAEDGSDTTVRWRPGMDVSHPEYGHGWVQGAGHGVVTVRFETRSTGRGPSRTF 430
Query 420 PVDTGDISNASPLDSL 435
D+ A +DSL
Sbjct 431 DDTDCDLVVADVIDSL 446
>gi|325674388|ref|ZP_08154076.1| DNA polymerase IV 1 [Rhodococcus equi ATCC 33707]
gi|325554648|gb|EGD24322.1| DNA polymerase IV 1 [Rhodococcus equi ATCC 33707]
Length=449
Score = 500 bits (1288), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 286/438 (66%), Positives = 338/438 (78%), Gaps = 5/438 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GA SAMPMHQARR
Sbjct 13 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGAHSAMPMHQARR 72
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVVLPPRG +YG SR+VFD +R +PV+EQLS DEAF EP +LAG +VE +
Sbjct 73 LVGPAAVVLPPRGSLYGHVSRQVFDALRVRMPVLEQLSMDEAFGEPAELAGVGKAEVERY 132
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR V ETGL+AS+GAG+GKQ+AKIASGLAKP+G+ VV +Q L+S LPVR+LW
Sbjct 133 CEELRALVLAETGLVASIGAGAGKQVAKIASGLAKPNGVTVVSPDVQQQLMSALPVRKLW 192
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPVAEEKL RLGI+TIG LAAL DAE ++LG TIGP+LHRLARGIDDRPV ERA+AK
Sbjct 193 GVGPVAEEKLKRLGIDTIGALAALPDAEVVSVLGGTIGPSLHRLARGIDDRPVAERADAK 252
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+T+A D+ T+ L A+D+ A AH+RL RDGR ART+ +KL+KSDMS +TRS T
Sbjct 253 QVSAETTYAEDIVTLAGLRRAVDASAAAAHRRLDRDGRAARTVVLKLRKSDMSIVTRSLT 312
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+PY TTD L A+R + DPL++GPIRL+GVGF GLS + Q SLF + D Q A
Sbjct 313 LPYATTDLQILTATAQRQVIDPLELGPIRLVGVGFGGLSAVSQGSLFPELD--QAVPAED 370
Query 361 YV-ETPG-AVVPAAHDATM-WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR 417
V E G A+ D T+ WR G DV+HPE GHGWVQGAGHGVVTVRFETR +G G +R
Sbjct 371 DVAEAEGDAIAEDGSDTTVRWRPGMDVSHPEYGHGWVQGAGHGVVTVRFETRSTGRGPSR 430
Query 418 TFPVDTGDISNASPLDSL 435
TF D+ A +DSL
Sbjct 431 TFDDTDCDLVVADVIDSL 448
>gi|326382572|ref|ZP_08204263.1| DNA polymerase IV [Gordonia neofelifaecis NRRL B-59395]
gi|326198691|gb|EGD55874.1| DNA polymerase IV [Gordonia neofelifaecis NRRL B-59395]
Length=447
Score = 496 bits (1276), Expect = 4e-138, Method: Compositional matrix adjust.
Identities = 278/441 (64%), Positives = 324/441 (74%), Gaps = 5/441 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LH+DMDAFFASVEQLTRPTL GRPVLVGG GGRGVVAGASYE+R +GA SAMPMHQARR
Sbjct 1 MLHIDMDAFFASVEQLTRPTLAGRPVLVGGAGGRGVVAGASYESRVFGAHSAMPMHQARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVV+PPRG VY + S RVFD VR VP++E LSFDEAF EP +LAGA + F
Sbjct 61 LVGGAAVVVPPRGSVYRVVSGRVFDVVRSFVPIIETLSFDEAFGEPAELAGATVAEALAF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
ERLR +R++TGL ASVG GSGKQIAKIASG+AKPDG+RV+ + E L LPVR+LW
Sbjct 121 AERLRASIREQTGLPASVGFGSGKQIAKIASGMAKPDGVRVISPSSELEFLQELPVRKLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPV ++L RLG+ETIG LAALSDAE ++LGAT GPALHRLA+G+DDRPV+ERAEAK
Sbjct 181 GIGPVTGDRLARLGVETIGHLAALSDAEVVSVLGATNGPALHRLAQGVDDRPVMERAEAK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTF VD+ L A+ A AH+RL DGRGART+ VKL++SDMS LTRS T
Sbjct 241 QISAESTFPVDIVDAPALRIAVAGAAAGAHRRLAADGRGARTVVVKLRRSDMSILTRSIT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P TTD L A R+ DPL++GPIRL+GVG+SGLSD +QESLF T A
Sbjct 301 LPGATTDLDVLTAAAHRVTLDPLEVGPIRLVGVGYSGLSDAQQESLFPGLGDEPNTGDAQ 360
Query 361 YVETPGAVVPAAH----DATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSA 416
+ V P H D W G DV HP+ GHGWVQG GHG VTVRFETR +GPG A
Sbjct 361 P-QAADPVAPEEHARESDPADWPTGTDVHHPDHGHGWVQGGGHGFVTVRFETRATGPGRA 419
Query 417 RTFPVDTGDISNASPLDSLDW 437
TF + ++ A PLDSL W
Sbjct 420 YTFRLPEPALTRADPLDSLGW 440
>gi|229490455|ref|ZP_04384296.1| DNA polymerase IV 1 [Rhodococcus erythropolis SK121]
gi|229322745|gb|EEN88525.1| DNA polymerase IV 1 [Rhodococcus erythropolis SK121]
Length=442
Score = 496 bits (1276), Expect = 5e-138, Method: Compositional matrix adjust.
Identities = 277/444 (63%), Positives = 330/444 (75%), Gaps = 12/444 (2%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LHLDMDAFFAS EQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 1 MLHLDMDAFFASAEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
++G +AVVLPPR +Y + S+R FD +R +P++EQLS DEAF EP +LAG A++V F
Sbjct 61 MVGASAVVLPPRMSLYSVLSKRTFDALRLRMPILEQLSVDEAFGEPVELAGVGADEVRAF 120
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR ++ ETGL+AS+GAG+GKQ+AKIASGLAKPDG+ V+ + LL LPVR+LW
Sbjct 121 CEDLRALIKAETGLVASIGAGAGKQVAKIASGLAKPDGVAVIPPGMQHELLDPLPVRKLW 180
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKL RLGIETIG A AE A+ILG T+GP LHRLA+GIDDRPV ERAE+K
Sbjct 181 GIGPVAEEKLKRLGIETIGGFARTPIAEVASILGTTVGPGLHRLAQGIDDRPVAERAESK 240
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA D+ TM QL A++S A RL +DGR ART+ +KLKKSDMS LTRS T
Sbjct 241 QISAESTFAADIVTMAQLRAAVESSGRAAFSRLEKDGRAARTVVLKLKKSDMSILTRSVT 300
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P+ T D L A++ + DP ++GPIRL+GVGF+GLS +RQ SLF + D + +
Sbjct 301 LPFATIDRQILIATAQKQVIDPQELGPIRLVGVGFAGLSTVRQGSLFPELD---QDVPGY 357
Query 361 YVET-PGAVVPAAHDATM--------WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS 411
VET GA+ A DA + W G DV HPE GHGWVQGAGHGVVTVRFETR S
Sbjct 358 PVETLTGALDEAELDAPVAARVPQRYWHPGLDVKHPEYGHGWVQGAGHGVVTVRFETRSS 417
Query 412 GPGSARTFPVDTGDISNASPLDSL 435
G G A+TF + A +DSL
Sbjct 418 GTGIAKTFAESDEVLEVADAVDSL 441
>gi|343924225|ref|ZP_08763788.1| DNA polymerase IV [Gordonia alkanivorans NBRC 16433]
gi|343766030|dbj|GAA10714.1| DNA polymerase IV [Gordonia alkanivorans NBRC 16433]
Length=519
Score = 494 bits (1272), Expect = 1e-137, Method: Compositional matrix adjust.
Identities = 286/471 (61%), Positives = 337/471 (72%), Gaps = 34/471 (7%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
V+HLDMDAFFASVEQLTRPTLRGRPVLVGG GGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 42 VMHLDMDAFFASVEQLTRPTLRGRPVLVGGSGGRGVVAGASYEARVFGARSAMPMHQARR 101
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIG T VV+PPRG VYG S+RVF VR VPV+E LSFDEAFAEP +LAGA F
Sbjct 102 LIGPTGVVVPPRGAVYGKVSKRVFRLVREAVPVIETLSFDEAFAEPAELAGATVAQAREF 161
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
E++R R+R E GL ASVG GSGKQ+AKIASG+AKPDG+ V+ + E L GLPVR+LW
Sbjct 162 AEQVRARIRTECGLAASVGFGSGKQLAKIASGMAKPDGVMVIPPSGEIEFLHGLPVRKLW 221
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPV+ ++L RLGI+TIG LA +S E A++LGAT+GPALHRLA+G+DDRPV ERA AK
Sbjct 222 GIGPVSGDRLARLGIDTIGDLARMSTVEVASVLGATVGPALHRLAQGVDDRPVAERASAK 281
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA D+ +++L +AI A AH+RLL+DGRGART+ +KLK+SDMS LTRSAT
Sbjct 282 QISAESTFAEDIVDLDELRKAIRKAATDAHRRLLKDGRGARTVVLKLKRSDMSILTRSAT 341
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLT------Q 354
TTD L A+RL DP +G IRL+GVGFSGLS ++Q +LF D D
Sbjct 342 TAAATTDFDDLERTAQRLALDPRTVGAIRLVGVGFSGLSAVQQYALFDDLDAAPDETTHH 401
Query 355 ETAAAHYVETPGA-------VVPAAHDATM---------------------WRVGDDVAH 386
+TA+A +P + V HD T+ + G DV H
Sbjct 402 DTASAGGAASPSSDSGGIVEVSETVHDTTVDTESPEPVRFAPGGNPQSRAPFAPGADVTH 461
Query 387 PELGHGWVQGAGHGVVTVRFETRGSGPGSARTFPVDTGDISNASPLDSLDW 437
PE GHGWVQG+GHGVVTVRFETR +GPG RTF VD D+ A PLDSL+W
Sbjct 462 PEFGHGWVQGSGHGVVTVRFETRTTGPGRTRTFGVDDPDLRPADPLDSLEW 512
>gi|226307027|ref|YP_002766987.1| DNA polymerase IV [Rhodococcus erythropolis PR4]
gi|226186144|dbj|BAH34248.1| DNA polymerase IV [Rhodococcus erythropolis PR4]
Length=454
Score = 490 bits (1262), Expect = 2e-136, Method: Compositional matrix adjust.
Identities = 277/444 (63%), Positives = 328/444 (74%), Gaps = 12/444 (2%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLHLDMDAFFAS EQLTRPTLRGRPVLVGGLGGRGVVAGASYEAR +GARSAMPMHQARR
Sbjct 13 VLHLDMDAFFASAEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQARR 72
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
++G AVVLPPR +Y + S+R FD +R +P++EQLS DEAF EP +LAG A++V F
Sbjct 73 MVGGGAVVLPPRMSLYSVLSKRTFDALRLRMPILEQLSVDEAFGEPVELAGVGADEVRAF 132
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
CE LR ++ ETGL+AS+GAG+GKQ+AKIASGLAKPDG+ V+ + LL LPVR+LW
Sbjct 133 CEDLRALIKAETGLVASIGAGAGKQVAKIASGLAKPDGVAVIPPGMQHELLDPLPVRKLW 192
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAEEKL RLGIETIG A AE A+ILG T+GP LHRLA+GIDDRPV ERAE+K
Sbjct 193 GIGPVAEEKLKRLGIETIGGFARTPIAEVASILGTTVGPGLHRLAQGIDDRPVAERAESK 252
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAESTFA D+ TM QL A++S A RL +DGR ART+ +KLKKSDMS LTRS T
Sbjct 253 QISAESTFAADIVTMAQLRAAVESSGRAAFSRLEKDGRAARTVVLKLKKSDMSILTRSVT 312
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+P+ T D L A++ + DP ++GPIRL+GVGF+GLS +RQ SLF + D + +
Sbjct 313 LPFATIDRQILVATAQKQVIDPQELGPIRLVGVGFAGLSTVRQGSLFPELD---QDVPGY 369
Query 361 YVET-PGAVVPAAHDATM--------WRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS 411
VET GA+ A D + W G DV HPE GHGWVQGAGHGVVTVRFETR S
Sbjct 370 PVETLTGALDEAELDVPVAARVPQRYWHPGLDVKHPEYGHGWVQGAGHGVVTVRFETRSS 429
Query 412 GPGSARTFPVDTGDISNASPLDSL 435
G G A+TF + A +DSL
Sbjct 430 GTGIAKTFAESDEVLEVADAVDSL 453
>gi|227548924|ref|ZP_03978973.1| DNA polymerase IV [Corynebacterium lipophiloflavum DSM 44291]
gi|227078949|gb|EEI16912.1| DNA polymerase IV [Corynebacterium lipophiloflavum DSM 44291]
Length=455
Score = 471 bits (1211), Expect = 2e-130, Method: Compositional matrix adjust.
Identities = 249/450 (56%), Positives = 308/450 (69%), Gaps = 11/450 (2%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAF+AS EQLTRPTL+GRPVLV G+ GRGVVAGASYEAR YGARSAMP H+A R
Sbjct 5 VLHIDMDAFYASCEQLTRPTLKGRPVLVAGVSGRGVVAGASYEARKYGARSAMPTHRAAR 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G V++ PR VY ASRRVF+ + V VVEQLS DEAF EP +LAGA E+V +
Sbjct 65 LVGPKVVLVAPRRAVYSTASRRVFEVIARHVAVVEQLSIDEAFMEPAELAGASPEEVRAW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
+ LR +++ETGL +S+GAGSGKQ AKI SGLAKPDG+ V+ AE+ +L LPV +LW
Sbjct 125 ADTLRATIKEETGLPSSIGAGSGKQYAKIGSGLAKPDGVFVIPRAEQLEILHPLPVSQLW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPV E KL +GIETIG AALS+ E LG + L LARGID+R V RAEAK
Sbjct 185 GVGPVTEAKLASVGIETIGDFAALSEREVEIALGGAVAKHLWALARGIDNREVAPRAEAK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS+E T+ DLTT Q++EA+ A +H+RLL DGRGART++VKL+ +D TRSAT
Sbjct 245 QISSEHTYPQDLTTAPQVNEALTRAAAESHRRLLHDGRGARTVSVKLRMADFRVETRSAT 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQ------ 354
+PY T DA L A +L+ P ++GPIRL+GV +SGL D Q+ LF + D
Sbjct 305 LPYATDDAETLAATAFKLVRYPDEVGPIRLVGVSYSGLEDALQDVLFPELDQVNSAGSVS 364
Query 355 ---ETAAAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS 411
E + + E + A + WR DV HPE GHGW+QG GHG VTVRFETR +
Sbjct 365 SDIEVGVSDHAEPVHVEITDA--PSGWRATQDVYHPEYGHGWIQGTGHGWVTVRFETRAT 422
Query 412 GPGSARTFPVDTGDISNASPLDSLDWPDYI 441
GPG RT VD D+S A P+DSL W D++
Sbjct 423 GPGRTRTLRVDDADLSAADPVDSLAWEDWL 452
>gi|300780843|ref|ZP_07090697.1| DNA-directed DNA polymerase IV [Corynebacterium genitalium ATCC
33030]
gi|300532550|gb|EFK53611.1| DNA-directed DNA polymerase IV [Corynebacterium genitalium ATCC
33030]
Length=463
Score = 457 bits (1175), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 244/451 (55%), Positives = 307/451 (69%), Gaps = 13/451 (2%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAF+AS EQLTRPTL+GRPVLV G+ GRGVVAGASYEAR +GARSAMP ++A R
Sbjct 8 VLHIDMDAFYASCEQLTRPTLKGRPVLVAGVTGRGVVAGASYEARKFGARSAMPTYRATR 67
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AV++ PR VY ASRRVF+ + V VVEQLS DEAF EP +L GA ++V +
Sbjct 68 LVGPQAVLVTPRRKVYTTASRRVFEIIARHVDVVEQLSIDEAFMEPHELQGATPDEVRDW 127
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
LR ++R+ETGL +S+GAGSGKQ AKI SGLAKPDG ++ A++ +L LPV+ LW
Sbjct 128 ANTLRDQIREETGLPSSIGAGSGKQYAKIGSGLAKPDGTYIIPKAQQTDILHPLPVKELW 187
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPV KL GIETIG AA+++ E LG +G L LARGIDDR V RAE+K
Sbjct 188 GVGPVTGAKLTGAGIETIGDFAAMTEREVDIALGGVVGKQLWMLARGIDDRDVKPRAESK 247
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QISAE T+ DLTT ++ AI A AH+RLL DGRGART TVKLK +D +RS T
Sbjct 248 QISAEHTYPQDLTTTAEVEAAIRRAASDAHRRLLIDGRGARTATVKLKMADFHIESRSTT 307
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD--------L 352
+PY T D L A R+ P ++GPIRL+GVGFSGL D+ Q++LF + D +
Sbjct 308 LPYATDDLETLVAAAFRIARYPDELGPIRLVGVGFSGLEDVMQDTLFPELDQAIIPHRVI 367
Query 353 TQETAAAHYVETPGAVVPAAHDA--TMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRG 410
+ET + + P +PA +A T W DV HPE GHGW+QGAGHG VTVRFETR
Sbjct 368 PEETGVSDLADAP---LPAFEEAAKTGWAATQDVFHPEYGHGWIQGAGHGFVTVRFETRA 424
Query 411 SGPGSARTFPVDTGDISNASPLDSLDWPDYI 441
+GPG + F D D+ A P++SL W +++
Sbjct 425 TGPGKVKNFRADDPDLVPADPVNSLAWEEWL 455
>gi|302524794|ref|ZP_07277136.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
gi|302433689|gb|EFL05505.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
Length=439
Score = 454 bits (1169), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 244/436 (56%), Positives = 302/436 (70%), Gaps = 3/436 (0%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
V+HLD+DAF+AS EQLTRPTLRGR V+VGG G RGVVAGASYE+R YG RSAMPM QARR
Sbjct 5 VVHLDLDAFYASAEQLTRPTLRGRAVVVGGTGHRGVVAGASYESREYGVRSAMPMSQARR 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+ VVLPPR +Y + S++VFD V + PV+E++S DEAFAEPP LAGA E V +
Sbjct 65 LLPAGGVVLPPRFRLYEMLSKQVFDVVSEVAPVLERISLDEAFAEPPALAGASVEQVTEW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
E+LR R+R+ETGL AS+GAG+GKQ+AKI S AKPDG+ VV E+ L+ LPVR LW
Sbjct 125 AEKLRTRIREETGLTASIGAGTGKQVAKIGSDRAKPDGLLVVPPGTEREFLAPLPVRALW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE KL +G+ T+G+LAAL + +A + LG +G L RLA G DDRPV ER EAK
Sbjct 185 GIGPVAEAKLRTIGVLTLGELAALPEPDAVSTLGGVVGRDLRRLASGFDDRPVAERGEAK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+TF VD+ + +L + IA AH RL++ GR ART+ +KL+ +DMST+TRS T
Sbjct 245 QVSAETTFDVDVVDLARLRAEVRKIAAGAHARLVKAGRVARTVVIKLRHTDMSTVTRSET 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADS-DLTQETAAA 359
PT D L A RLL DP + G +RL GV FSGLS Q++LF+ + + E
Sbjct 305 TASPTDDLEQLAATAERLLLDPQEFGGVRLAGVAFSGLSVPHQDALFSLTVPVATEEPVV 364
Query 360 HYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTF 419
+PG P + ++ WR GDDV H E G GWVQGAGHG VTVRFETR SGPG ARTF
Sbjct 365 TSAPSPGGSAPVS--SSGWRPGDDVVHAEFGTGWVQGAGHGRVTVRFETRTSGPGVARTF 422
Query 420 PVDTGDISNASPLDSL 435
++ P D L
Sbjct 423 DQTDPALTRGEPSDCL 438
>gi|311741548|ref|ZP_07715372.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311303718|gb|EFQ79797.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium
ATCC 33035]
Length=462
Score = 451 bits (1161), Expect = 9e-125, Method: Compositional matrix adjust.
Identities = 244/455 (54%), Positives = 304/455 (67%), Gaps = 15/455 (3%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFASVEQLTRPTL+GRPVLVGG GRGVVAGASYEAR YGA SAMPM++A++
Sbjct 5 VLHIDMDAFFASVEQLTRPTLQGRPVLVGGTSGRGVVAGASYEARVYGAHSAMPMYRAQQ 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G+ AVV+ PR VY ASRRVF + V V+EQLS DEAF EP L GA AE+V+ +
Sbjct 65 LVGLRAVVVQPRRAVYSAASRRVFGIIAQHVEVIEQLSIDEAFMEPAALEGASAEEVKRW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
+ LR +R+ETGL S+GAGSGKQ AKI SG AKPDG V+ + +L L V +LW
Sbjct 125 ADELRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTFVIPAERQLDMLHPLAVNKLW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPV KL +G+ETIGQLAA++ E +G+ +G L +LARGIDDR V RA +K
Sbjct 185 GVGPVTGAKLKSIGVETIGQLAAMTRKEVEISIGSVVGLQLWQLARGIDDREVAPRAISK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS E T+ DL T ++ AI AE AH+RLL+DGRGART+TVKL+ +D +RS T
Sbjct 245 QISTEHTYPKDLQTAPEVDAAITRAAEGAHRRLLKDGRGARTVTVKLRMADFHIESRSTT 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF----------ADS 350
+PY T DA L A +L P ++GPIRL+GV +SGL RQ+ LF A +
Sbjct 305 LPYATDDAAVLTAAAFKLARYPDELGPIRLVGVSYSGLETARQDVLFPELDREIVRPAPA 364
Query 351 DLTQETA----AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRF 406
D ET A + P V D W DV HP+ GHGW+QGAGHGVV+VRF
Sbjct 365 DTDYETGVSDDATPAIPAPTVTVEEETD-NQWHATQDVFHPDYGHGWIQGAGHGVVSVRF 423
Query 407 ETRGSGPGSARTFPVDTGDISNASPLDSLDWPDYI 441
ETR +GPG ++F + + A PLDSLDW D++
Sbjct 424 ETRATGPGRTKSFAANDPALVPADPLDSLDWQDWL 458
>gi|291004643|ref|ZP_06562616.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338]
Length=438
Score = 451 bits (1161), Expect = 9e-125, Method: Compositional matrix adjust.
Identities = 258/440 (59%), Positives = 309/440 (71%), Gaps = 8/440 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
+LH+DMDAFFASVEQLTRPT+RGRPVLVGGLG RG VAGASYEAR YGARSAMPM +ARR
Sbjct 1 MLHMDMDAFFASVEQLTRPTVRGRPVLVGGLGPRGTVAGASYEARTYGARSAMPMAEARR 60
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L V AVVLPPR VY S RV VR + VV+Q+S DEAF EP +LAGA VE F
Sbjct 61 LCPV-AVVLPPRFRVYSAVSERVLGIVRDVSEVVQQVSIDEAFMEPAELAGAEPATVERF 119
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
RLR RVR ETG+ AS+GAGSGKQ+AKIASGLAKPDG VV EE LLS LPVR+LW
Sbjct 120 AARLRERVRRETGVTASIGAGSGKQLAKIASGLAKPDGALVVPPQEEIELLSALPVRKLW 179
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPV E KLHR+G+ TIG+LAAL + ++LG G LHRLA GIDD PV ERAEAK
Sbjct 180 GIGPVTEGKLHRIGVHTIGELAALHLGDVTSLLGQAHGTELHRLAHGIDDHPVEERAEAK 239
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+TF VD+T +L + +A++AH+RL+ GR A+T+TVK++ SD +T++R+ T
Sbjct 240 QVSAETTFDVDITDQGRLLAEVAGMADNAHRRLVSSGRAAKTVTVKVRDSDFTTISRAET 299
Query 301 MPYPTTDAGALFTVARRLLPDPLQIG-PIRLLGVGFSGLSDIRQESLFAD--SDLTQETA 357
T+DA L ARRL + G PIRL+GV +SGL++ QE+LF +++ T
Sbjct 300 FASATSDAATLAAAARRLTSVAVPPGTPIRLVGVSYSGLANSEQEALFESPGAEVVVSTQ 359
Query 358 AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSAR 417
+ + + P AA A WR GDDV H E GHGWVQGAG G VTVRFET +G G AR
Sbjct 360 SVEHTQVP----EAAPTARGWRAGDDVRHDEHGHGWVQGAGLGRVTVRFETATTGRGVAR 415
Query 418 TFPVDTGDISNASPLDSLDW 437
TF D + PLDSL W
Sbjct 416 TFASDEPLLHPGDPLDSLGW 435
>gi|300783435|ref|YP_003763726.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|299792949|gb|ADJ43324.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340524821|gb|AEK40026.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length=435
Score = 451 bits (1160), Expect = 1e-124, Method: Compositional matrix adjust.
Identities = 248/435 (58%), Positives = 299/435 (69%), Gaps = 5/435 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
V+HLD+DAF+AS EQLTRPTL GRPVLVGGLG RGVVAGASYE+RA+G +SAMPM QARR
Sbjct 5 VIHLDLDAFYASAEQLTRPTLAGRPVLVGGLGPRGVVAGASYESRAFGIKSAMPMAQARR 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+ V++PPR VY S+ VF V + PV+E++S DE+FAEPP L GA + V F
Sbjct 65 LLPANGVIVPPRFRVYERLSQEVFAVVTEVAPVLEKISLDESFAEPPSLIGASFDAVTEF 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
C LR R+R ETGL+AS+GAG+GKQIAKIAS AKPDG+ VV E+A L+ LPVR LW
Sbjct 125 CAALRARIRAETGLVASIGAGNGKQIAKIASDEAKPDGLLVVPQGTERAFLAPLPVRALW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
GIGPVAE KL +G++T+GQLAALS+ +A LG +G L RLA G DDRPV RAE K
Sbjct 185 GIGPVAEGKLRFIGVQTLGQLAALSEQDAVATLGGVVGRDLRRLATGADDRPVAGRAETK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
Q+SAE+TF D+ + L + IA AHQRLL+ GR ART+ +KL+ +DM T+TRS T
Sbjct 245 QVSAETTFDTDIKDLPMLKAEVRRIAVGAHQRLLKAGRVARTVVIKLRHTDMHTVTRSET 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+ PT D L A RLL DP + G IRL GV +SGLS Q++LF L +A +
Sbjct 305 ISAPTDDLAELAATAERLLIDPAEFGGIRLAGVAYSGLSVPHQDALFT---LAAPSAPST 361
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
V T PAA + WR GDDV H E G GWVQGAGHG VTVRFE R SGPG ARTFP
Sbjct 362 VVST--VPAPAAAPPSEWRQGDDVVHEEFGTGWVQGAGHGRVTVRFEHRSSGPGIARTFP 419
Query 421 VDTGDISNASPLDSL 435
++ P D L
Sbjct 420 QSDPALTRGDPRDCL 434
>gi|38234163|ref|NP_939930.1| DNA polymerase IV [Corynebacterium diphtheriae NCTC 13129]
gi|81564704|sp|Q6NGD8.1|DPO4_CORDI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|38200425|emb|CAE50113.1| DNA polymerase IV [Corynebacterium diphtheriae]
Length=451
Score = 450 bits (1158), Expect = 2e-124, Method: Compositional matrix adjust.
Identities = 237/446 (54%), Positives = 301/446 (68%), Gaps = 9/446 (2%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
V+H+DMDAFFAS EQLTRPTLRGRPVLVGG GRGVVAGASYEAR +GARSAMPM+QA+
Sbjct 5 VIHVDMDAFFASCEQLTRPTLRGRPVLVGGASGRGVVAGASYEARTFGARSAMPMYQAKA 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
LIG+ VV+ PR VY AS+RVF + + VE++S DE F EPP+L GA A +V+T+
Sbjct 65 LIGMRGVVVSPRFAVYRAASQRVFSILERMGGTVEKISIDEGFVEPPELYGASASEVDTW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
+RLR +RDETGL ASVG G+GKQ+AKI S LAKPDGI + +E + + LPV RLW
Sbjct 125 AQRLRAVIRDETGLPASVGGGAGKQVAKICSDLAKPDGIYLCAASEHEEKMYPLPVGRLW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPV KL +LG+ETIG LA +S+ E LG T+G +L RLA+G DDR V RA AK
Sbjct 185 GVGPVTRTKLQQLGVETIGDLARMSEREIDISLGTTVGRSLWRLAQGHDDREVAPRAIAK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS E T+ DL T + AI + +H+RLL DGRGART++VKL+ +D +RSAT
Sbjct 245 QISVEHTYPKDLVTSRAVDTAIIRASRESHRRLLDDGRGARTVSVKLRMADFRIESRSAT 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF---------ADSD 351
+PY T + + A +L P ++GPIRL+GVG SGL D RQ+ LF D+D
Sbjct 305 LPYATDNLDTVTATALKLARYPDEVGPIRLVGVGLSGLEDARQDILFPELDRVVPVKDTD 364
Query 352 LTQETAAAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGS 411
+ H + + + A WR D+ HP+ GHGWVQG GHG +TVRFETR +
Sbjct 365 FEVGVSDPHDSDLEISTTDESPTAIGWRATQDIWHPDYGHGWVQGLGHGKITVRFETRTT 424
Query 412 GPGSARTFPVDTGDISNASPLDSLDW 437
GPG RTF + +S+A P++SLDW
Sbjct 425 GPGKVRTFDTNDALLSSADPINSLDW 450
>gi|296117557|ref|ZP_06836141.1| ATP-NAD kinase [Corynebacterium ammoniagenes DSM 20306]
gi|295969288|gb|EFG82529.1| ATP-NAD kinase [Corynebacterium ammoniagenes DSM 20306]
Length=444
Score = 446 bits (1148), Expect = 3e-123, Method: Compositional matrix adjust.
Identities = 232/437 (54%), Positives = 296/437 (68%), Gaps = 6/437 (1%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFAS EQLTRPTL GRPVLVGG+ GRGVVAGASYEAR YGA SAMPM++A++
Sbjct 5 VLHIDMDAFFASCEQLTRPTLMGRPVLVGGMSGRGVVAGASYEARKYGAHSAMPMYRAQQ 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVV+ PR VY +AS+RVF + V +VEQLS DEA+ EP +L GA E+VE +
Sbjct 65 LVGPKAVVVRPRFEVYRLASQRVFHYIESHVELVEQLSIDEAYMEPAELVGASPEEVEAW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
LR +R++ GL AS+GAGSGKQ AKI SG AKPDG ++ +++ +L L V LW
Sbjct 125 AHELRAAIREDVGLPASIGAGSGKQFAKIGSGQAKPDGAFIIPADKQEEMLHPLDVDELW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPV KLH +G+ TIG LA LS E ILG+TIGP+L +ARG+DDRPV RAE+K
Sbjct 185 GVGPVTATKLHSIGVNTIGDLARLSQREVEIILGSTIGPSLWAMARGVDDRPVAPRAESK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
+SAE T+ DLT+ +++ A++ AH+RLL+DGRGART+TVK++ +D + TRS T
Sbjct 245 SVSAEHTYPEDLTSKDEVDRALERALTGAHRRLLKDGRGARTVTVKMRMADFHSETRSLT 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSDLTQETAAAH 360
+ Y T D L L P ++GPIRL+GVGFSGL RQ+ LF + D +
Sbjct 305 LAYATDDIATLRKAMHSLARYPAELGPIRLVGVGFSGLEAERQDVLFPELDQAMVSTETR 364
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
+ E D T W DV HPE GHGW+QG GHG V+VRFETR +GPG ++F
Sbjct 365 FDEETTVA-----DRT-WHATQDVFHPEYGHGWIQGTGHGFVSVRFETRATGPGPFKSFA 418
Query 421 VDTGDISNASPLDSLDW 437
D + A P+DSL W
Sbjct 419 ADDDKLQPADPIDSLAW 435
>gi|134102671|ref|YP_001108332.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338]
gi|133915294|emb|CAM05407.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338]
Length=435
Score = 446 bits (1147), Expect = 4e-123, Method: Compositional matrix adjust.
Identities = 256/437 (59%), Positives = 306/437 (71%), Gaps = 8/437 (1%)
Query 4 LDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARRLIG 63
+DMDAFFASVEQLTRPT+RGRPVLVGGLG RG VAGASYEAR YGARSAMPM +ARRL
Sbjct 1 MDMDAFFASVEQLTRPTVRGRPVLVGGLGPRGTVAGASYEARTYGARSAMPMAEARRLCP 60
Query 64 VTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETFCER 123
V AVVLPPR VY S RV VR + VV+Q+S DEAF EP +LAGA VE F R
Sbjct 61 V-AVVLPPRFRVYSAVSERVLGIVRDVSEVVQQVSIDEAFMEPAELAGAEPATVERFAAR 119
Query 124 LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLWGIG 183
LR RVR ETG+ AS+GAGSGKQ+AKIASGLAKPDG VV EE LLS LPVR+LWGIG
Sbjct 120 LRERVRRETGVTASIGAGSGKQLAKIASGLAKPDGALVVPPQEEIELLSALPVRKLWGIG 179
Query 184 PVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAKQIS 243
PV E KLHR+G+ TIG+LAAL + ++LG G LHRLA GIDD PV ERAEAKQ+S
Sbjct 180 PVTEGKLHRIGVHTIGELAALHLGDVTSLLGQAHGTELHRLAHGIDDHPVEERAEAKQVS 239
Query 244 AESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSATMPY 303
AE+TF VD+T +L + +A++AH+RL+ GR A+T+TVK++ SD +T++R+ T
Sbjct 240 AETTFDVDITDQGRLLAEVAGMADNAHRRLVSSGRAAKTVTVKVRDSDFTTISRAETFAS 299
Query 304 PTTDAGALFTVARRLLPDPLQIG-PIRLLGVGFSGLSDIRQESLFAD--SDLTQETAAAH 360
T+DA L ARRL + G PIRL+GV +SGL++ QE+LF +++ T +
Sbjct 300 ATSDAATLAAAARRLTSVAVPPGTPIRLVGVSYSGLANSEQEALFESPGAEVVVSTQSVE 359
Query 361 YVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRFETRGSGPGSARTFP 420
+ + P AA A WR GDDV H E GHGWVQGAG G VTVRFET +G G ARTF
Sbjct 360 HTQVP----EAAPTARGWRAGDDVRHDEHGHGWVQGAGLGRVTVRFETATTGRGVARTFA 415
Query 421 VDTGDISNASPLDSLDW 437
D + PLDSL W
Sbjct 416 SDEPLLHPGDPLDSLGW 432
>gi|227833477|ref|YP_002835184.1| DNA polymerase IV [Corynebacterium aurimucosum ATCC 700975]
gi|227454493|gb|ACP33246.1| DNA polymerase IV [Corynebacterium aurimucosum ATCC 700975]
Length=492
Score = 446 bits (1146), Expect = 5e-123, Method: Compositional matrix adjust.
Identities = 247/458 (54%), Positives = 302/458 (66%), Gaps = 21/458 (4%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFASVEQLTRPTLRGRPVLVGG GRGVVAGASYEARAYGA SAMPM +A++
Sbjct 16 VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTSGRGVVAGASYEARAYGAHSAMPMFRAQQ 75
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVV+ PR VY ASRRVF + V+EQLS DEAF EP L GA +V +
Sbjct 76 LVGYRAVVVQPRRAVYSAASRRVFGIIAQHAGVIEQLSIDEAFMEPAALLGATPAEVREW 135
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
E LRR +R ETGL +S+GAG+GKQ AKIASG AKPDG VV + L+ LPV +LW
Sbjct 136 SENLRRVIRTETGLPSSIGAGAGKQSAKIASGEAKPDGTFVVPQERFKELIHPLPVGKLW 195
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G GPV ++KL +G+ETIGQLAA+S E LG +G L LA+GID+RPV RA AK
Sbjct 196 GAGPVTQQKLAAIGVETIGQLAAMSRKEVEISLGGVVGVQLWELAQGIDERPVAPRAIAK 255
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS E T+ DL T ++ A+ A AH RLL+DGRGART+TVKL+ +D +RSAT
Sbjct 256 QISTEFTYPTDLRTAAEVDAALIRAAHGAHSRLLKDGRGARTVTVKLRMADFHIESRSAT 315
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD---------SD 351
+ Y T D L A L P ++GPIRL+GV +SGL + RQ+ LF + D
Sbjct 316 LSYATDDLKVLEAKALSLARYPEELGPIRLVGVSYSGLEEARQDVLFPELDREIVRQAPD 375
Query 352 LTQETAAAHYVETPGAV-----VPAAHDA-----TMWRVGDDVAHPELGHGWVQGAGHGV 401
ET + Y+ PG+ V + DA WR DV HP+ GHGW+QGAGHGV
Sbjct 376 TDYETGVSDYL--PGSTSAPVNVSSTADAEESSSCRWRATQDVYHPDFGHGWIQGAGHGV 433
Query 402 VTVRFETRGSGPGSARTFPVDTGDISNASPLDSLDWPD 439
V+VRFETR +GPG R+F + ++ A PL+SL W D
Sbjct 434 VSVRFETRATGPGFVRSFAAEEEELRPADPLNSLAWED 471
>gi|255325326|ref|ZP_05366432.1| DNA polymerase IV [Corynebacterium tuberculostearicum SK141]
gi|255297891|gb|EET77202.1| DNA polymerase IV [Corynebacterium tuberculostearicum SK141]
Length=462
Score = 446 bits (1146), Expect = 5e-123, Method: Compositional matrix adjust.
Identities = 246/455 (55%), Positives = 304/455 (67%), Gaps = 15/455 (3%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFASVEQLTRPTL+GRPVLVGG GRGVVAGASYEAR YGA SAMPM++A++
Sbjct 5 VLHIDMDAFFASVEQLTRPTLQGRPVLVGGTSGRGVVAGASYEARVYGAHSAMPMYRAQQ 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G+ AVV+ PR VY ASRRVF + V V+EQLS DEAF EP L GA AE+V+ +
Sbjct 65 LVGLRAVVVQPRRAVYSAASRRVFGIIAQHVEVIEQLSIDEAFMEPAALEGASAEEVKRW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
+ LR +R+ETGL S+GAGSGKQ AKI SG AKPDG V+ + +L L V +LW
Sbjct 125 ADELRALIREETGLPCSIGAGSGKQFAKIGSGEAKPDGTFVIPAERQLDMLHPLAVNKLW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G+GPV KL +G+ETIGQLAA++ E +G+ +G L +LARGIDDR V RA +K
Sbjct 185 GVGPVTGAKLKSIGVETIGQLAAMTRKEVEISIGSVVGLQLWQLARGIDDREVAPRAISK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS E T+ DL T ++ AI AE AH+RLL+DGRGART+TVKL+ +D +RS T
Sbjct 245 QISTEHTYPKDLQTAPEVDAAIARAAEGAHRRLLKDGRGARTVTVKLRMADFHIESRSTT 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLF----------ADS 350
+PY T DA L A +L P ++GPIRL+GV +SGL RQ+ LF A +
Sbjct 305 LPYATDDAAVLTAAAFKLARYPDELGPIRLVGVSYSGLEAARQDVLFPELDREIVRPAPA 364
Query 351 DLTQETA----AAHYVETPGAVVPAAHDATMWRVGDDVAHPELGHGWVQGAGHGVVTVRF 406
D ET A + P V D W DV HPE GHGW+QGAGHGVV+VRF
Sbjct 365 DTDYETGVSDDATPAIPAPTVTVEEETD-NQWHATQDVFHPEYGHGWIQGAGHGVVSVRF 423
Query 407 ETRGSGPGSARTFPVDTGDISNASPLDSLDWPDYI 441
ETR +GPG ++F D + A PLDSLDW D++
Sbjct 424 ETRATGPGRTKSFAADDPALVPADPLDSLDWQDWL 458
>gi|262184465|ref|ZP_06043886.1| DNA polymerase IV [Corynebacterium aurimucosum ATCC 700975]
Length=481
Score = 446 bits (1146), Expect = 6e-123, Method: Compositional matrix adjust.
Identities = 247/458 (54%), Positives = 302/458 (66%), Gaps = 21/458 (4%)
Query 1 VLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQARR 60
VLH+DMDAFFASVEQLTRPTLRGRPVLVGG GRGVVAGASYEARAYGA SAMPM +A++
Sbjct 5 VLHIDMDAFFASVEQLTRPTLRGRPVLVGGTSGRGVVAGASYEARAYGAHSAMPMFRAQQ 64
Query 61 LIGVTAVVLPPRGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVAEDVETF 120
L+G AVV+ PR VY ASRRVF + V+EQLS DEAF EP L GA +V +
Sbjct 65 LVGYRAVVVQPRRAVYSAASRRVFGIIAQHAGVIEQLSIDEAFMEPAALLGATPAEVREW 124
Query 121 CERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLW 180
E LRR +R ETGL +S+GAG+GKQ AKIASG AKPDG VV + L+ LPV +LW
Sbjct 125 SENLRRVIRTETGLPSSIGAGAGKQSAKIASGEAKPDGTFVVPQERFKELIHPLPVGKLW 184
Query 181 GIGPVAEEKLHRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAK 240
G GPV ++KL +G+ETIGQLAA+S E LG +G L LA+GID+RPV RA AK
Sbjct 185 GAGPVTQQKLAAIGVETIGQLAAMSRKEVEISLGGVVGVQLWELAQGIDERPVAPRAIAK 244
Query 241 QISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSDMSTLTRSAT 300
QIS E T+ DL T ++ A+ A AH RLL+DGRGART+TVKL+ +D +RSAT
Sbjct 245 QISTEFTYPTDLRTAAEVDAALIRAAHGAHSRLLKDGRGARTVTVKLRMADFHIESRSAT 304
Query 301 MPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFAD---------SD 351
+ Y T D L A L P ++GPIRL+GV +SGL + RQ+ LF + D
Sbjct 305 LSYATDDLKVLEAKALSLARYPEELGPIRLVGVSYSGLEEARQDVLFPELDREIVRQAPD 364
Query 352 LTQETAAAHYVETPGAV-----VPAAHDA-----TMWRVGDDVAHPELGHGWVQGAGHGV 401
ET + Y+ PG+ V + DA WR DV HP+ GHGW+QGAGHGV
Sbjct 365 TDYETGVSDYL--PGSTSAPVNVSSTADAEESSSCRWRATQDVYHPDFGHGWIQGAGHGV 422
Query 402 VTVRFETRGSGPGSARTFPVDTGDISNASPLDSLDWPD 439
V+VRFETR +GPG R+F + ++ A PL+SL W D
Sbjct 423 VSVRFETRATGPGFVRSFAAEEEELRPADPLNSLAWED 460
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 973451812480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40