BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1545
Length=75
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608683|ref|NP_216061.1| hypothetical protein Rv1545 [Mycoba... 152 2e-35
gi|167968100|ref|ZP_02550377.1| hypothetical protein MtubH3_0870... 143 8e-33
gi|289442999|ref|ZP_06432743.1| conserved hypothetical protein [... 94.4 5e-18
gi|189218335|ref|YP_001938977.1| adenine-specific DNA methylase ... 35.4 3.1
>gi|15608683|ref|NP_216061.1| hypothetical protein Rv1545 [Mycobacterium tuberculosis H37Rv]
gi|15841012|ref|NP_336049.1| hypothetical protein MT1596.1 [Mycobacterium tuberculosis CDC1551]
gi|31792731|ref|NP_855224.1| hypothetical protein Mb1572 [Mycobacterium bovis AF2122/97]
48 more sequence titles
Length=75
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%)
Query 1 VPNGVLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACREEVGITTILAGRDE 60
+PNGVLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACREEVGITTILAGRDE
Sbjct 1 MPNGVLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACREEVGITTILAGRDE 60
Query 61 CGVCDKTAGLDGAAP 75
CGVCDKTAGLDGAAP
Sbjct 61 CGVCDKTAGLDGAAP 75
>gi|167968100|ref|ZP_02550377.1| hypothetical protein MtubH3_08705 [Mycobacterium tuberculosis
H37Ra]
Length=71
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%)
Query 5 VLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACREEVGITTILAGRDECGVC 64
+LGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACREEVGITTILAGRDECGVC
Sbjct 1 MLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACREEVGITTILAGRDECGVC 60
Query 65 DKTAGLDGAAP 75
DKTAGLDGAAP
Sbjct 61 DKTAGLDGAAP 71
>gi|289442999|ref|ZP_06432743.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289415918|gb|EFD13158.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=54
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/46 (98%), Positives = 46/46 (100%), Gaps = 0/46 (0%)
Query 1 VPNGVLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACR 46
VPNGVLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVAC+
Sbjct 2 VPNGVLGLGNPSRLAALYGLQLAHESQCCQMHNLPSAARQVTVACQ 47
>gi|189218335|ref|YP_001938977.1| adenine-specific DNA methylase containing a Zn-ribbon [Methylacidiphilum
infernorum V4]
gi|189185193|gb|ACD82378.1| Adenine-specific DNA methylase containing a Zn-ribbon [Methylacidiphilum
infernorum V4]
Length=731
Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 18/54 (34%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query 19 GLQLAHESQCCQMHNLPSAARQVTVAC--REEVGITTILAGRDECGVCDKTAGL 70
GLQ A +C ++H LP +++ C R + T+ G+ C C TAGL
Sbjct 215 GLQWAFCKECHEIHELPIERKEIRCRCGTRTRIAQGTLNRGKVRCPACGDTAGL 268
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131059142040
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40