BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1547 Length=1184 Score E Sequences producing significant alignments: (Bits) Value gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [M... 2430 0.0 gi|340626568|ref|YP_004745020.1| putative DNA polymerase III [My... 2428 0.0 gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha... 2426 0.0 gi|339294521|gb|AEJ46632.1| DNA polymerase III subunit alpha [My... 2409 0.0 gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha... 2276 0.0 gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [M... 2189 0.0 gi|336457951|gb|EGO36941.1| DNA-directed DNA polymerase III PolC... 2188 0.0 gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subun... 2187 0.0 gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [... 2184 0.0 gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [... 2183 0.0 gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [M... 2180 0.0 gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III ... 2175 0.0 gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha... 2154 0.0 gi|342860872|ref|ZP_08717522.1| DNA polymerase III subunit alpha... 2134 0.0 gi|333990820|ref|YP_004523434.1| DNA polymerase III subunit alph... 2105 0.0 gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [... 2080 0.0 gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [... 2079 0.0 gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [... 2060 0.0 gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alph... 2058 0.0 gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alph... 2012 0.0 gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [N... 1937 0.0 gi|312140121|ref|YP_004007457.1| DNA polymerase III alpha subuni... 1925 0.0 gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III ... 1924 0.0 gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [... 1914 0.0 gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alph... 1912 0.0 gi|333919047|ref|YP_004492628.1| putative DNA polymerase III sub... 1886 0.0 gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subuni... 1856 0.0 gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subuni... 1856 0.0 gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alph... 1850 0.0 gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alph... 1836 0.0 gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha... 1832 0.0 gi|343924232|ref|ZP_08763795.1| DNA polymerase III alpha subunit... 1830 0.0 gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alph... 1745 0.0 gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus... 1735 0.0 gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha... 1723 0.0 gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subuni... 1628 0.0 gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [C... 1628 0.0 gi|341825183|gb|AEK92704.1| DNA polymerase III subunit alpha [Co... 1623 0.0 gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III ... 1607 0.0 gi|336325369|ref|YP_004605335.1| DNA polymerase III subunit alph... 1602 0.0 gi|337291101|ref|YP_004630122.1| DNA polymerase III subunit alph... 1600 0.0 gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subuni... 1599 0.0 gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alph... 1597 0.0 gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha... 1596 0.0 gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [C... 1595 0.0 gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alph... 1593 0.0 gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [C... 1592 0.0 gi|344044799|gb|EGV40474.1| DNA polymerase III subunit alpha [Co... 1591 0.0 gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [C... 1590 0.0 gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha... 1584 0.0 >gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv] gi|15841014|ref|NP_336051.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CDC1551] gi|31792733|ref|NP_855226.1| DNA polymerase III subunit alpha [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=1184 Score = 2430 bits (6298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1184/1184 (100%), Positives = 1184/1184 (100%), Gaps = 0/1184 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS Sbjct 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN Sbjct 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA Sbjct 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA Sbjct 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW Sbjct 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 Query 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY Sbjct 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP Sbjct 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA Sbjct 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA Sbjct 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV Sbjct 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI Sbjct 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD Sbjct 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP Sbjct 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC Sbjct 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA Sbjct 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN Sbjct 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV Sbjct 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS Sbjct 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS Sbjct 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 >gi|340626568|ref|YP_004745020.1| putative DNA polymerase III [Mycobacterium canettii CIPT 140010059] gi|340004758|emb|CCC43902.1| putative DNA polymerase III (alpha chain) DNAE1 (DNA nucleotidyltransferase) [Mycobacterium canettii CIPT 140010059] Length=1184 Score = 2428 bits (6293), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1182/1184 (99%), Positives = 1184/1184 (100%), Gaps = 0/1184 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS Sbjct 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN Sbjct 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA Sbjct 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA Sbjct 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW Sbjct 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 Query 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY Sbjct 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP Sbjct 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA Sbjct 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA Sbjct 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV Sbjct 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI Sbjct 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD Sbjct 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP Sbjct 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC Sbjct 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA Sbjct 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN Sbjct 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV Sbjct 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVAVRDDRIALIANDLTVPDFSNA+V+RPLAVSLPTRQCTFDKVSALKQVLARHPGTS Sbjct 1081 NAKVAVRDDRIALIANDLTVPDFSNAQVDRPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS Sbjct 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 >gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] gi|289685831|gb|EFD53319.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] Length=1184 Score = 2426 bits (6287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1183/1184 (99%), Positives = 1183/1184 (99%), Gaps = 0/1184 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS Sbjct 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN Sbjct 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA Sbjct 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA Sbjct 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW Sbjct 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 Query 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY Sbjct 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP Sbjct 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA Sbjct 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA Sbjct 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV Sbjct 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI Sbjct 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD Sbjct 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP Sbjct 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDI AC Sbjct 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDILAC 900 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA Sbjct 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN Sbjct 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV Sbjct 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS Sbjct 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS Sbjct 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 >gi|339294521|gb|AEJ46632.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CCDC5079] gi|339298157|gb|AEJ50267.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CCDC5180] Length=1174 Score = 2409 bits (6242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1173/1174 (99%), Positives = 1174/1174 (100%), Gaps = 0/1174 (0%) Query 11 VHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPII 70 +HLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPII Sbjct 1 MHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPII 60 Query 71 GVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHASF 130 GVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHASF Sbjct 61 GVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHASF 120 Query 131 EGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPDN 190 EGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPDN Sbjct 121 EGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPDN 180 Query 191 YFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKTL 250 YFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKTL Sbjct 181 YFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKTL 240 Query 251 SDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVFP 310 SDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVFP Sbjct 241 SDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVFP 300 Query 311 VPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLISY 370 VPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLISY Sbjct 301 VPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLISY 360 Query 371 ARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDDRR 430 ARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDDRR Sbjct 361 ARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDDRR 420 Query 431 RGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPAIM 490 RGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPAIM Sbjct 421 RGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPAIM 480 Query 491 AKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMS 550 AKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMS Sbjct 481 AKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMS 540 Query 551 SEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANRGI 610 SEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANRGI Sbjct 541 SEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANRGI 600 Query 611 DLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRPGP 670 DLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRPGP Sbjct 601 DLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRPGP 660 Query 671 MGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYSLA 730 MGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYSLA Sbjct 661 MGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYSLA 720 Query 731 RADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHAAG 790 RADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHAAG Sbjct 721 RADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHAAG 780 Query 791 YGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGLNF 850 YGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGLNF Sbjct 781 YGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGLNF 840 Query 851 ASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESLIK 910 ASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESLIK Sbjct 841 ASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESLIK 900 Query 911 AGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKVPD 970 AGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKVPD Sbjct 901 AGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKVPD 960 Query 971 DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGGIL 1030 DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGGIL Sbjct 961 DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGGIL 1020 Query 1031 ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRDDR 1090 ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRDDR Sbjct 1021 ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRDDR 1080 Query 1091 IALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLISGD 1150 IALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLISGD Sbjct 1081 IALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLISGD 1140 Query 1151 RITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 RITTLALDQSLRVTPSPALMGDLKELLGPGCLGS Sbjct 1141 RITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1174 >gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha [Mycobacterium kansasii ATCC 12478] Length=1183 Score = 2276 bits (5897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1112/1183 (94%), Positives = 1147/1183 (97%), Gaps = 1/1183 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 MSGSS+ SFVHLHNHTEYSMLDGAAKI PMLAEVERL MPA+GMTDHGNMFGASEFYNS Sbjct 1 MSGSSS-RSFVHLHNHTEYSMLDGAAKINPMLAEVERLQMPAIGMTDHGNMFGASEFYNS 59 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 AT+AGIKPIIGVEAYIAP SRFDTRRI WGDPSQKADD+SGSGSYTHLTMMAENATGLRN Sbjct 60 ATQAGIKPIIGVEAYIAPASRFDTRRIFWGDPSQKADDISGSGSYTHLTMMAENATGLRN 119 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LFKLSS ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQ+REALEAAA Sbjct 120 LFKLSSLASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQEREALEAAA 179 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 +WREIVGP+NYFLELMDHGLTIERRVR+GLL IGR LNIPPLATNDCHYVTRDAAHNHEA Sbjct 180 RWREIVGPENYFLELMDHGLTIERRVREGLLHIGRTLNIPPLATNDCHYVTRDAAHNHEA 239 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW Sbjct 240 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 299 Query 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 TPRDRMPVFPVPDGHD ASWLRHEV AGLRRRFP GPP Y RA YEIDVIC+KGFPSY Sbjct 300 TPRDRMPVFPVPDGHDPASWLRHEVAAGLRRRFPDGPPASYVTRADYEIDVICAKGFPSY 359 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FLIVADLI YA+S GIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP Sbjct 360 FLIVADLIGYAKSVGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 419 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 420 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 479 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPPAIMAKDIPLSGITDP+HERYKEAAEVRGLIETDPDVRTIYQTA GLEGLIRNA Sbjct 480 ITKALPPAIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTALGLEGLIRNA 539 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA Sbjct 540 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDA 599 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 IDN++AN+GIDLDLESVPLDDK TYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFED+V Sbjct 600 IDNIKANKGIDLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDIV 659 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AV+ALYRPGPMG NAHNDYADRKN RQAIKPIHPEL EPL EILAETYGLIVYQEQIMRI Sbjct 660 AVLALYRPGPMGQNAHNDYADRKNGRQAIKPIHPELAEPLEEILAETYGLIVYQEQIMRI 719 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVA YSLARADILRKAMGKKKREVL+KE+EGF+ GMQANGFS AIKALWDTILPFAD Sbjct 720 AQKVAGYSLARADILRKAMGKKKREVLDKEYEGFAQGMQANGFSSGAIKALWDTILPFAD 779 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP Sbjct 780 YAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 839 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNESGLNFASVG+DIRYGLGAVRNVGANVVGSL+QTR+DKGKFTDFSDYLNKIDISAC Sbjct 840 PDVNESGLNFASVGEDIRYGLGAVRNVGANVVGSLIQTRSDKGKFTDFSDYLNKIDISAC 899 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESLIKAGAFDSLGHARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG +DDGTG A Sbjct 900 NKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDDGTGAA 959 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLA QVDTAIPAILDGDVPN Sbjct 960 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAGQVDTAIPAILDGDVPN 1019 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 D QVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADI DDAVVLV Sbjct 1020 DTQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIADDAVVLV 1079 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVA+RDDR++LIAN+L +PDFSNA+V+RPL+VSLPTRQCTFDKVSALKQVLARHPGTS Sbjct 1080 NAKVAIRDDRVSLIANELVIPDFSNAQVQRPLSVSLPTRQCTFDKVSALKQVLARHPGTS 1139 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 QVHLRLISGDRITTL LDQSLRVTPSPALMGDLKELLGPGCLG Sbjct 1140 QVHLRLISGDRITTLELDQSLRVTPSPALMGDLKELLGPGCLG 1182 >gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395707|gb|AAS03574.1| DnaE1 [Mycobacterium avium subsp. paratuberculosis K-10] Length=1177 Score = 2189 bits (5671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1076/1176 (92%), Positives = 1119/1176 (96%), Gaps = 3/1176 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYN+ATKAGIK Sbjct 4 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIK 63 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTM+AENA GLRNLFKLSS Sbjct 64 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSL 123 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 ASFEGQL KWSRMDAELIAEHA+GII TTGCPSGEVQTRLRLGQDREALE+AAKWREI G Sbjct 124 ASFEGQLGKWSRMDAELIAEHADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DN+FLELMDHGL+IE+RVRDGLLEIGR LNIPPLATNDCHY+TRDAAHNHEALLCVQTG Sbjct 184 ADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALLCVQTG 243 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 KTLSDPNRFKFDGDGYYLKSAAEMRQIWD EVPGACDSTLLIAERVQSYA+VWTPRDRMP Sbjct 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303 Query 308 VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADL 367 VFPVP+GHDQASWL HEV AGLRRRFP G Y +RA YEI VIC KGFPSYFLIVADL Sbjct 304 VFPVPEGHDQASWLHHEVMAGLRRRFPDGVGQDYIDRAEYEIKVICDKGFPSYFLIVADL 363 Query 368 ISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 427 I+YARS IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDIDFD Sbjct 364 INYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDIDFD 423 Query 428 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 487 DRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP Sbjct 424 DRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 483 Query 488 AIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 547 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV Sbjct 484 PIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 543 Query 548 IMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRAN 607 IMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA+DN++AN Sbjct 544 IMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALDNIKAN 603 Query 608 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYR 667 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALYR Sbjct 604 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALYR 663 Query 668 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASY 727 PGPMGMNAHNDYADRKN RQ IKPIHPELEEPLREILAETYGLIVYQEQIM IAQKVASY Sbjct 664 PGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQIMFIAQKVASY 723 Query 728 SLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSH 787 ++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKSH Sbjct 724 TMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFNKSH 783 Query 788 AAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESG 847 AAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES Sbjct 784 AAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESL 843 Query 848 LNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTES 907 +NFASVGQDIR+GLGAVRNVGANVVGSL++TRN+KGKFTDFSDYLNKIDISACNKKVTES Sbjct 844 VNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKIDISACNKKVTES 903 Query 908 LIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIK 967 LIKAGAFDSL HARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG DG G + VFTIK Sbjct 904 LIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--DG-GCTESVFTIK 960 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT IPAILDGDVPN+ QVRVG Sbjct 961 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVPNETQVRVG 1020 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPH YS+YGADI DDAVVL+NAKVA+R Sbjct 1021 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHAYSTYGADIADDAVVLINAKVAIR 1080 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRIALIAN+L VPDFS A+V+RPLAVSLPTRQCT DKV+ALKQVLARHPGTSQVHLRLI Sbjct 1081 DDRIALIANELVVPDFSTAQVDRPLAVSLPTRQCTIDKVTALKQVLARHPGTSQVHLRLI 1140 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 SGDRITTL LD SLRVTPSPALMGDLKELLGPGCLG Sbjct 1141 SGDRITTLELDASLRVTPSPALMGDLKELLGPGCLG 1176 >gi|336457951|gb|EGO36941.1| DNA-directed DNA polymerase III PolC [Mycobacterium avium subsp. paratuberculosis S397] Length=1177 Score = 2188 bits (5669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1076/1176 (92%), Positives = 1119/1176 (96%), Gaps = 3/1176 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYN+ATKAGIK Sbjct 4 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIK 63 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTM+AENA GLRNLFKLSS Sbjct 64 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSL 123 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 ASFEGQL KWSRMDAELIAEHA+GII TTGCPSGEVQTRLRLGQDREALE+AAKWREI G Sbjct 124 ASFEGQLGKWSRMDAELIAEHADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DN+FLELMDHGL+IE+RVRDGLLEIGR LNIPPLATNDCHYVTRDAAHNHEALLCVQTG Sbjct 184 ADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALLCVQTG 243 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 KTLSDPNRFKFDGDGYYLKSAAEMRQIWD EVPGACDSTLLIAERVQSYA+VWTPRDRMP Sbjct 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303 Query 308 VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADL 367 VFPVP+GHDQASWL HEV AGLRRRFP G Y +RA YEI VIC KGFPSYFLIVADL Sbjct 304 VFPVPEGHDQASWLHHEVMAGLRRRFPDGVGQDYIDRAEYEIKVICDKGFPSYFLIVADL 363 Query 368 ISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 427 I+YARS IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDIDFD Sbjct 364 INYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDIDFD 423 Query 428 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 487 DRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP Sbjct 424 DRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 483 Query 488 AIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 547 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV Sbjct 484 PIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 543 Query 548 IMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRAN 607 IMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA+DN++AN Sbjct 544 IMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALDNIKAN 603 Query 608 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYR 667 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALYR Sbjct 604 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALYR 663 Query 668 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASY 727 PGPMGMNAHNDYADRKN RQ IKPIHPELEEPLREILAETYGLIVYQEQIM IAQKVASY Sbjct 664 PGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQIMFIAQKVASY 723 Query 728 SLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSH 787 ++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKSH Sbjct 724 TMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFNKSH 783 Query 788 AAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESG 847 AAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES Sbjct 784 AAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESL 843 Query 848 LNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTES 907 +NFASVGQDIR+GLGAVRNVGANVVGSL++TRN+KGKFTDFSDYLNKIDISACNKKVTES Sbjct 844 VNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKIDISACNKKVTES 903 Query 908 LIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIK 967 LIKAGAFDSL HARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG DG G + VFTIK Sbjct 904 LIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--DG-GCTESVFTIK 960 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT IPAILDGDVPN+ QVRVG Sbjct 961 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVPNETQVRVG 1020 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 GI+ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPH YS+YGADI DDAVVL+NAKVA+R Sbjct 1021 GIVASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHAYSTYGADIADDAVVLINAKVAIR 1080 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRIALIAN+L VPDFS A+V+RPLAVSLPTRQCT DKV+ALKQVLARHPGTSQVHLRLI Sbjct 1081 DDRIALIANELVVPDFSTAQVDRPLAVSLPTRQCTIDKVTALKQVLARHPGTSQVHLRLI 1140 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 SGDRITTL LD SLRVTPSPALMGDLKELLGPGCLG Sbjct 1141 SGDRITTLELDASLRVTPSPALMGDLKELLGPGCLG 1176 >gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M] gi|183175708|gb|ACC40818.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M] Length=1180 Score = 2187 bits (5668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1069/1184 (91%), Positives = 1126/1184 (96%), Gaps = 4/1184 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 MSGSS+ SFVHLHNHTEYSMLDGAAKITPMLAEVERL MPA+GMTDHGNMFGASEFYNS Sbjct 1 MSGSSS-RSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNS 59 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 ATKAG+KPIIGVEAY+APGSRFDTRRI WGDPSQK DDVSGSGSYTHLTM+AENATGLRN Sbjct 60 ATKAGVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRN 119 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LFKLSS ASFEGQL KWSRMDAEL+AEHAEGII TTGCPSGEVQTRLRLG DREALE+AA Sbjct 120 LFKLSSLASFEGQLGKWSRMDAELVAEHAEGIIATTGCPSGEVQTRLRLGHDREALESAA 179 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 KWREI G DNYFLELMDHGL+IERRVR+GL+EIGR L+IPPLATNDCHYVTRDAAHNHEA Sbjct 180 KWREIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEA 239 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQ+WDD++PGACDSTLLIAERVQSYADVW Sbjct 240 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVW 299 Query 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 TPRDRMP+FPVP+GHD ASWL HEV AGLRRRFP+G Y +RA YEI VIC KGFPSY Sbjct 300 TPRDRMPIFPVPEGHDPASWLHHEVMAGLRRRFPSGLGQDYIDRAEYEIKVICDKGFPSY 359 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FLIVADLI+YARS IRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER S P Sbjct 360 FLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAP 419 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 420 DIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 479 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPP IMAKDIPLSGITDP+HER+KEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA Sbjct 480 ITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 539 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA Sbjct 540 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDA 599 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 I+N++ANRGIDLDLES+PLDDK TYELLGRG+TLGVFQLDGGPMRDLLRRMQPT F D+V Sbjct 600 IENIKANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTEFNDIV 659 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AV+ALYRPGPMGMNAHNDYADRKNNRQA+KPIHPELEEPLREIL+ETYGLIVYQEQIM I Sbjct 660 AVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQEQIMFI 719 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVASY++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA Sbjct 720 AQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAG 779 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP Sbjct 780 YAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 839 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNES +NFASVGQDIR+GLGAVRNVGANVVGSL+ TR+ KGKFTDFSDYLNKIDISAC Sbjct 840 PDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKIDISAC 899 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESLIKAGAFDSLGH RKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG +D G A Sbjct 900 NKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDSG---A 956 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 D VFTIKVP+DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDV N Sbjct 957 DAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVSN 1016 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 DAQVRVGGILA+VNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYS+YGADI DDAVVLV Sbjct 1017 DAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSNYGADIADDAVVLV 1076 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVA+RDDRI+LIAN+L VPDFSNA+ +RPLAVSLPTRQCT DKV+ALKQVLARHPGTS Sbjct 1077 NAKVAIRDDRISLIANELVVPDFSNAQADRPLAVSLPTRQCTIDKVTALKQVLARHPGTS 1136 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 QVHLRLISGDRITTL LDQSLRVTPSPALMGDLKELLGPGCLGS Sbjct 1137 QVHLRLISGDRITTLELDQSLRVTPSPALMGDLKELLGPGCLGS 1180 >gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [Mycobacterium ulcerans Agy99] gi|118569305|gb|ABL04056.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium ulcerans Agy99] Length=1180 Score = 2184 bits (5660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1068/1184 (91%), Positives = 1124/1184 (95%), Gaps = 4/1184 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 MSGSS+ SFVHLHNHTEYSMLDGAAKITPMLAEVERL MPA+GMTDHGNMFGASEFYNS Sbjct 1 MSGSSS-RSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNS 59 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 ATKAG+KPIIGVEAY+APGSRFDTRRI WGDPSQK DDVSGSGSYTHLTM+AENATGLRN Sbjct 60 ATKAGVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRN 119 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LFKLSS ASFEGQL KWSRMDAEL+AEHAEGII TTGCPSGEVQTRLRLG DREALE+AA Sbjct 120 LFKLSSLASFEGQLGKWSRMDAELVAEHAEGIIATTGCPSGEVQTRLRLGHDREALESAA 179 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 KWREI G DNYFLELMDHGL+IERRVR+GL+EIGR L+IPPLATNDCHYVTRDAAHNHEA Sbjct 180 KWREIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEA 239 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQ+WDD++PGACDSTLLIAERVQSYADVW Sbjct 240 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVW 299 Query 301 TPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSY 360 TPRDRMP+FPVP+GHD ASWL HEV AGLRRRFP+G Y +RA YEI VIC KGFPSY Sbjct 300 TPRDRMPIFPVPEGHDPASWLHHEVMAGLRRRFPSGLGQDYIDRAEYEIKVICDKGFPSY 359 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FLIVADLI+YARS IRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER S P Sbjct 360 FLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAP 419 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 420 DIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 479 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPP IMAKDIPLSGITDP+HER+KEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA Sbjct 480 ITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 539 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA Sbjct 540 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDA 599 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 I+N+ ANRGIDLDLES+PLDDK TYELLGRG+TLGVFQLDGGPMRDLLRRMQPT F D+V Sbjct 600 IENIEANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTEFNDIV 659 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AV+ALYRPGPMGMNAHNDYADRKNNRQA+KPIHPELEEPLREIL+ETYGLIVYQEQIM I Sbjct 660 AVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQEQIMFI 719 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVASY++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA Sbjct 720 AQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAG 779 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP Sbjct 780 YAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 839 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNES +NFASVGQDIR+GLGAVRNVGANVVGSL+ TR+ KGKFTDFSDYLNKIDISAC Sbjct 840 PDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKIDISAC 899 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESLIKAGAFDSLGH RKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG +D G A Sbjct 900 NKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDSG---A 956 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 D VFTIKVP+DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLA QVDTAIPAILDGDV N Sbjct 957 DAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLATQVDTAIPAILDGDVSN 1016 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 DAQVRVGGILA+VNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYS+YGADI DDAVVLV Sbjct 1017 DAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSNYGADIADDAVVLV 1076 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVA+RDDRI+LIAN+L VPDFSNA+ +RPLAVSLPTRQCT DKV+ALKQVLARHPGTS Sbjct 1077 NAKVAIRDDRISLIANELVVPDFSNAQADRPLAVSLPTRQCTIDKVTALKQVLARHPGTS 1136 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 QVHLRLISGDRITTL LDQSLRVTPSPALMGDLKELLGPGCLGS Sbjct 1137 QVHLRLISGDRITTLELDQSLRVTPSPALMGDLKELLGPGCLGS 1180 >gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [Mycobacterium avium 104] gi|118164420|gb|ABK65317.1| DNA polymerase III alpha subunit [Mycobacterium avium 104] Length=1177 Score = 2183 bits (5657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1075/1176 (92%), Positives = 1117/1176 (95%), Gaps = 3/1176 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYN+ATKAGIK Sbjct 4 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIK 63 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTM+AENA GLRNLFKLSS Sbjct 64 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSL 123 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 ASFEGQL KWSRMDAELIAEHA+GII TTGCPSGEVQTRLRLGQDREALE+AAKWREI G Sbjct 124 ASFEGQLGKWSRMDAELIAEHADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DN+FLELMDHGL+IE+RVR GLLEIGR LNIPPLATNDCHYVTRDAAHNHEALLCVQTG Sbjct 184 ADNFFLELMDHGLSIEQRVRGGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALLCVQTG 243 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 KTLSDPNRFKFDGDGYYLKSAAEMRQIWD EVPGACDSTLLIAERVQSYA+VWTPRDRMP Sbjct 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303 Query 308 VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADL 367 VFPVP+GHDQASWL HEV AGLRRRFP G Y +RA YEI VIC KGFPSYFLIVADL Sbjct 304 VFPVPEGHDQASWLHHEVMAGLRRRFPDGVGQDYIDRAEYEIKVICDKGFPSYFLIVADL 363 Query 368 ISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 427 I+YARS IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDIDFD Sbjct 364 INYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDIDFD 423 Query 428 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 487 DRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP Sbjct 424 DRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 483 Query 488 AIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 547 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV Sbjct 484 PIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 543 Query 548 IMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRAN 607 IMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA+DN++AN Sbjct 544 IMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALDNIKAN 603 Query 608 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYR 667 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALYR Sbjct 604 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALYR 663 Query 668 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASY 727 PGPMGMNAHNDYADRKN RQ IKPIHPELEEPLREILAETYGLIVYQEQIM IAQKVASY Sbjct 664 PGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQIMFIAQKVASY 723 Query 728 SLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSH 787 ++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKSH Sbjct 724 TMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFNKSH 783 Query 788 AAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESG 847 AAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES Sbjct 784 AAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESL 843 Query 848 LNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTES 907 +NFASVGQDIR+GLGAVRNVGANVVGSL++TR +KGKFTDFSDYLNKIDISACNKKVTES Sbjct 844 VNFASVGQDIRFGLGAVRNVGANVVGSLIKTREEKGKFTDFSDYLNKIDISACNKKVTES 903 Query 908 LIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIK 967 LIKAGAFDSL HARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG DG G + VFTIK Sbjct 904 LIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--DG-GCTESVFTIK 960 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT IPAILDGDVPN+ QVRVG Sbjct 961 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVPNETQVRVG 1020 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPH YS+YGADI DDAVVL+NAKVA+R Sbjct 1021 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHAYSTYGADIADDAVVLINAKVAIR 1080 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRIALIAN+L VPDFS A+V+RPLAVSLPTRQCT DKV+ALKQVLARHPGTSQVHLRLI Sbjct 1081 DDRIALIANELVVPDFSIAQVDRPLAVSLPTRQCTIDKVTALKQVLARHPGTSQVHLRLI 1140 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 SGDRITTL LD SLRVTPSPALMGDLKELLGPGCLG Sbjct 1141 SGDRITTLELDASLRVTPSPALMGDLKELLGPGCLG 1176 >gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [Mycobacterium leprae TN] gi|221230089|ref|YP_002503505.1| DNA polymerase III subunit alpha [Mycobacterium leprae Br4923] gi|14194699|sp|Q9X7F0.1|DPO3A_MYCLE RecName: Full=DNA polymerase III subunit alpha gi|4539136|emb|CAB39586.1| putative DNA polymerase III alpha chain [Mycobacterium leprae] gi|13093163|emb|CAC31588.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae] gi|219933196|emb|CAR71302.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae Br4923] Length=1177 Score = 2180 bits (5649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1073/1176 (92%), Positives = 1119/1176 (96%), Gaps = 3/1176 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDGAAKITPM AEVERL MPAVGMTDHGNMFGASEFYN+A KAGIK Sbjct 4 SSFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAGIK 63 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIGVEAYIAPGSRFDTRRI WGDPSQKADDVS G+YTHLTM+AENA GLRNLFKLSS Sbjct 64 PIIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLSSL 123 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 ASFEGQLSKWSRMDAELI E+AEGII+TTGCPSGEVQTRLRLG DREALE+AAKWREIVG Sbjct 124 ASFEGQLSKWSRMDAELIGEYAEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWREIVG 183 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 PDNYFLELMDHGL+IE+RVR+GLL IGR LNIPPLATNDCHYVTRDA HNHEALLCVQTG Sbjct 184 PDNYFLELMDHGLSIEQRVREGLLNIGRKLNIPPLATNDCHYVTRDAVHNHEALLCVQTG 243 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 KTLSDPNRFKF GDGYYLKSAAEMRQ+WDDEVPGACDSTLLIAERVQSYADVW PR+RMP Sbjct 244 KTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWEPRNRMP 303 Query 308 VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADL 367 VFPVP GHDQASWLRHEVDAGL+RRFP GPP+GY ERAAYEIDVIC KGFP+YFLIVADL Sbjct 304 VFPVPVGHDQASWLRHEVDAGLKRRFPDGPPNGYVERAAYEIDVICDKGFPAYFLIVADL 363 Query 368 ISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 427 +++ARS GIRVGPGRGSAAGSL AYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD Sbjct 364 VNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 423 Query 428 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 487 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFA+ADRITKALPP Sbjct 424 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAMADRITKALPP 483 Query 488 AIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 547 AIMAKDIPLSGITDP+HER+KEAAEVR LIETD DVR IYQTARGLEGLIRNAGVHACAV Sbjct 484 AIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARGLEGLIRNAGVHACAV 543 Query 548 IMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRAN 607 I+SSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAI+N++ N Sbjct 544 ILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIENIKTN 603 Query 608 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYR 667 RGIDLDLESVPLDD+ATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFED+VAV+ALYR Sbjct 604 RGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDIVAVLALYR 663 Query 668 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASY 727 PGPMGMNAHNDYADRKNNRQ IKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVA Y Sbjct 664 PGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVAGY 723 Query 728 SLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSH 787 SLARADILRKAMGKKKREVLEKEFEGFS+GMQANGFS AIKALWD ILPFADYAFNKSH Sbjct 724 SLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKALWDIILPFADYAFNKSH 783 Query 788 AAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESG 847 AAGYG++SYWTAYLKAN+ EYMAGLLTSVGDDKDKAAVYLADCRK GITVLPPDVNES Sbjct 784 AAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLADCRKFGITVLPPDVNESV 843 Query 848 LNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTES 907 L+FASVG DIRYGLGAVRNVGANVVGSL++TRN KGKF DFSDYLNKIDI++CNKKVTES Sbjct 844 LDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGKFADFSDYLNKIDITSCNKKVTES 903 Query 908 LIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIK 967 LIKAGAFDSLGH+RKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG D GT D VFTIK Sbjct 904 LIKAGAFDSLGHSRKGLFLVHADAVDSVLGTKKAEAIGQFDLFGGTDGGT---DAVFTIK 960 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIP ILDG V ND QVRVG Sbjct 961 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPTILDGGVSNDTQVRVG 1020 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 GILA+VNRRVNKNG+PWASAQL+DLTGGIEVMFFPHTYSSYGADI+DDAVVLVNAKV VR Sbjct 1021 GILAAVNRRVNKNGIPWASAQLDDLTGGIEVMFFPHTYSSYGADIIDDAVVLVNAKVVVR 1080 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRIALIAN L VPDFSN + +RPLAVSL TRQCTFDKV+ALKQVLARHPGTSQVHLRLI Sbjct 1081 DDRIALIANQLVVPDFSNVQEDRPLAVSLLTRQCTFDKVNALKQVLARHPGTSQVHLRLI 1140 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 SGDRITTL LDQSLRVT SPALMGDLK LLGPGCLG Sbjct 1141 SGDRITTLELDQSLRVTSSPALMGDLKALLGPGCLG 1176 >gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900205|gb|EFG79637.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=1181 Score = 2175 bits (5637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1060/1177 (91%), Positives = 1113/1177 (95%), Gaps = 0/1177 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYN+ATKAGIK Sbjct 5 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIGVEAYIAPGSRFDTRRI WGDP QK+DDVSGSGSYTHLTM+AENATGLRNLFKLSS Sbjct 65 PIIGVEAYIAPGSRFDTRRIQWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFKLSSL 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 ASFEGQL KWSRMDAELIAEHAEGII TTGCPSGEVQTRLRLG DREALE+AAKWREI G Sbjct 125 ASFEGQLGKWSRMDAELIAEHAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREIFG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGL+IE+RVR+GLLEIGR L IPPLATNDCHYVTRDAAHNHEALLCVQTG Sbjct 185 ADNYFLELMDHGLSIEQRVREGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 KTLSDPNRFKFDGDGYYLKSAAEMR++WDD++PGACDSTLLIAERVQ Y DVW RDRMP Sbjct 245 KTLSDPNRFKFDGDGYYLKSAAEMRRLWDDQIPGACDSTLLIAERVQPYDDVWAQRDRMP 304 Query 308 VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADL 367 +FPVP+GHDQASWL HEV AGLRRRFP+G Y +RA YEI VIC KGFPSYFLIVADL Sbjct 305 IFPVPEGHDQASWLHHEVMAGLRRRFPSGVGQDYIDRAEYEIKVICDKGFPSYFLIVADL 364 Query 368 ISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 427 I+YARS IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDIDFD Sbjct 365 INYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDIDFD 424 Query 428 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 487 DRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP Sbjct 425 DRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 484 Query 488 AIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 547 IMAKDIPLSGITDP HERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV Sbjct 485 PIMAKDIPLSGITDPEHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 544 Query 548 IMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRAN 607 IMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA++N++AN Sbjct 545 IMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALENIKAN 604 Query 608 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYR 667 RG+DLDLESVPLDD+ TYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALYR Sbjct 605 RGVDLDLESVPLDDEPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALYR 664 Query 668 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASY 727 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREIL+ETYGLIVYQEQIM IAQKVASY Sbjct 665 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILSETYGLIVYQEQIMFIAQKVASY 724 Query 728 SLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSH 787 ++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKSH Sbjct 725 TMGKADALRKAMGKKKLEVLEAEYKGFQEGMTANGFSEKAVKALWDTILPFAGYAFNKSH 784 Query 788 AAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESG 847 AAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES Sbjct 785 AAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESL 844 Query 848 LNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTES 907 +NFASVGQDIR+GLGAVRNVGANVVGSL++TRN+KGKFTDFSDYLNKIDISACNKKVTES Sbjct 845 VNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKIDISACNKKVTES 904 Query 908 LIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIK 967 LIKAGAFDSL HARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG +D G D VFTIK Sbjct 905 LIKAGAFDSLSHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGGSDGEAGCTDSVFTIK 964 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 VP+DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQ DT IPAILDGDVPN++QVRVG Sbjct 965 VPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQTDTQIPAILDGDVPNESQVRVG 1024 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPH YS+YGADI DD VVL+NAKVA+R Sbjct 1025 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHAYSTYGADIADDTVVLINAKVAIR 1084 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRI+LIAN+L VPDFSNA+ RP+AVSLPTRQCT DKVSALKQVLARHPGTSQVHLRLI Sbjct 1085 DDRISLIANELVVPDFSNAQPNRPIAVSLPTRQCTIDKVSALKQVLARHPGTSQVHLRLI 1144 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 SGDRITTL LD SLRVTPSPALMGDLKELLGPGCLGS Sbjct 1145 SGDRITTLELDASLRVTPSPALMGDLKELLGPGCLGS 1181 >gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha [Mycobacterium intracellulare ATCC 13950] Length=1177 Score = 2154 bits (5582), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1055/1176 (90%), Positives = 1105/1176 (94%), Gaps = 3/1176 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDGAAKI PMLAEV+RL MPAVGMTDHGNMFGASEFYN+ATKAGIK Sbjct 4 SSFVHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATKAGIK 63 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIGVEAYIAP SRFDTRRILWGDP QK+DDVSGSGSYTH+TM+AE TGLRNLFKLSS Sbjct 64 PIIGVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAETPTGLRNLFKLSSL 123 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 ASFEGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLG DREALE+AAKWREI G Sbjct 124 ASFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREIFG 183 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGL+IE+RVRDGLLEIGR L IPPLATNDCHYVTRDAAHNHEALLCVQTG Sbjct 184 ADNYFLELMDHGLSIEQRVRDGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALLCVQTG 243 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 KTLSDPNRFKFDGDGYYLKSAAEMR+IWDDEVPGACDSTLLIAERVQ Y +VW PRDRMP Sbjct 244 KTLSDPNRFKFDGDGYYLKSAAEMRRIWDDEVPGACDSTLLIAERVQPYDEVWAPRDRMP 303 Query 308 VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADL 367 +FPVP+GHDQASWL HEV AGL RRFP+G Y +RA YEI VIC KGFPSYFLIVADL Sbjct 304 IFPVPEGHDQASWLHHEVMAGLARRFPSGVGQDYIDRAEYEIKVICDKGFPSYFLIVADL 363 Query 368 ISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFD 427 I+YARS IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDIDFD Sbjct 364 INYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDIDFD 423 Query 428 DRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 487 DRRRGEMVRYAADKWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP Sbjct 424 DRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP 483 Query 488 AIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 547 IMAKDIPLSGITDP+HERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV Sbjct 484 PIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAV 543 Query 548 IMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRAN 607 IMSSEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA+DN++AN Sbjct 544 IMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALDNIKAN 603 Query 608 RGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYR 667 RGIDLDLESVPLDD TYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALYR Sbjct 604 RGIDLDLESVPLDDGPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALYR 663 Query 668 PGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASY 727 PGPMGMNAHNDYADRKN RQ IKPIHPELEEPLREIL+ETYGLIVYQEQIM IAQKVASY Sbjct 664 PGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILSETYGLIVYQEQIMFIAQKVASY 723 Query 728 SLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSH 787 ++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKSH Sbjct 724 TMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFNKSH 783 Query 788 AAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESG 847 AAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES Sbjct 784 AAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESL 843 Query 848 LNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTES 907 +NFASVG DIR+GLGAVRNVGANVVGSL+ TRN KGKFTDFSDYLNKIDI+ACNKKVTES Sbjct 844 VNFASVGTDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYLNKIDIAACNKKVTES 903 Query 908 LIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIK 967 LIKAGAFDSLGHARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG +D G + VFTIK Sbjct 904 LIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGGDD---GCTEAVFTIK 960 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT IPAILDGDVPN+ QVRVG Sbjct 961 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVPNETQVRVG 1020 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPH YS+YGADI DD VVL+NAKVA+R Sbjct 1021 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHAYSTYGADIADDTVVLINAKVAIR 1080 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRI+LIAN+L VPDFS+A+V RP+AVSLPTRQCT DKVSALKQVLARHPGTSQVHLRLI Sbjct 1081 DDRISLIANELVVPDFSSAQVNRPIAVSLPTRQCTIDKVSALKQVLARHPGTSQVHLRLI 1140 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 SGDRITTL LD SLRVTPSPALMGDLKELLGPGCLG Sbjct 1141 SGDRITTLELDASLRVTPSPALMGDLKELLGPGCLG 1176 >gi|342860872|ref|ZP_08717522.1| DNA polymerase III subunit alpha [Mycobacterium colombiense CECT 3035] gi|342131896|gb|EGT85153.1| DNA polymerase III subunit alpha [Mycobacterium colombiense CECT 3035] Length=1171 Score = 2134 bits (5530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1042/1173 (89%), Positives = 1100/1173 (94%), Gaps = 3/1173 (0%) Query 11 VHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPII 70 +HLHNHTEYSMLDGAAKI PMLAEV+RL MPAVGMTDHGNMFGASEFYN+ATKAGIKPII Sbjct 1 MHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATKAGIKPII 60 Query 71 GVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHASF 130 GVEAYIAP SRFDTRRILWGDP QK+DDVSGSGSYTH+TM+AENATGLRNLF+LSS ASF Sbjct 61 GVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFRLSSLASF 120 Query 131 EGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPDN 190 EGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLG +REALE+AAKWREI G DN Sbjct 121 EGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHEREALESAAKWREIFGADN 180 Query 191 YFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKTL 250 YFLELMDHGL+IE RVR+GLLEIGR L IPPLATNDCHYVTRDAAHNHEALLCVQTGKTL Sbjct 181 YFLELMDHGLSIETRVREGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALLCVQTGKTL 240 Query 251 SDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVFP 310 SDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSY +VW PRDRMP+FP Sbjct 241 SDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYDEVWEPRDRMPIFP 300 Query 311 VPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLISY 370 VP+GHDQASWL HEV AGL+RRFP+G Y +RA YEI VIC KGFPSYFLIVADLI++ Sbjct 301 VPEGHDQASWLHHEVLAGLQRRFPSGVGQDYIDRAEYEIKVICDKGFPSYFLIVADLINH 360 Query 371 ARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDDRR 430 ARS IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDIDFDDRR Sbjct 361 ARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDIDFDDRR 420 Query 431 RGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPAIM 490 RGEMVRYAA+KWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPP IM Sbjct 421 RGEMVRYAAEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPPIM 480 Query 491 AKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMS 550 AKDIPLSGITDP HERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMS Sbjct 481 AKDIPLSGITDPGHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMS 540 Query 551 SEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANRGI 610 SEPLTEAIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTIIGDA++N+++NRGI Sbjct 541 SEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALENIKSNRGI 600 Query 611 DLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRPGP 670 DLDLESVPLDDK TYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALYRPGP Sbjct 601 DLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALYRPGP 660 Query 671 MGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYSLA 730 MGMNAHNDYADRKN RQA+KPIHPELEEPLREILAET+GLIVYQEQIM IAQKVASY++ Sbjct 661 MGMNAHNDYADRKNGRQAVKPIHPELEEPLREILAETHGLIVYQEQIMFIAQKVASYTMG 720 Query 731 RADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHAAG 790 +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKSHAAG Sbjct 721 KADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFNKSHAAG 780 Query 791 YGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGLNF 850 YG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES +NF Sbjct 781 YGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESLVNF 840 Query 851 ASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESLIK 910 ASVGQDIR+GLGAVRNVGANVVGSL+ TRN KGKFTDFSDYLNKID++ACNKKVTESLIK Sbjct 841 ASVGQDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYLNKIDVAACNKKVTESLIK 900 Query 911 AGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKVPD 970 AGAFDSLGHARKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG ++ G + VF IKVPD Sbjct 901 AGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDE---GCTESVFNIKVPD 957 Query 971 DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGGIL 1030 DEWEDKHKLALEREMLGLYVSGHPLN VAHLL AQVDT IPAILDGDVPNDAQVRVGGIL Sbjct 958 DEWEDKHKLALEREMLGLYVSGHPLNQVAHLLTAQVDTQIPAILDGDVPNDAQVRVGGIL 1017 Query 1031 ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRDDR 1090 ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP YS YGADI DD VVL+ AKV++RDDR Sbjct 1018 ASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPQAYSVYGADIADDVVVLIKAKVSLRDDR 1077 Query 1091 IALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLISGD 1150 +ALIAN+L VPDFSNA+ RPLAVSLPTRQCT DKV+ALKQVLARHPGT+QVHLRLISGD Sbjct 1078 VALIANELVVPDFSNAQPNRPLAVSLPTRQCTIDKVTALKQVLARHPGTAQVHLRLISGD 1137 Query 1151 RITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 RITTL LD SLRVTPSPALMGDLK LLGPGCLG Sbjct 1138 RITTLELDASLRVTPSPALMGDLKALLGPGCLG 1170 >gi|333990820|ref|YP_004523434.1| DNA polymerase III subunit alpha [Mycobacterium sp. JDM601] gi|333486788|gb|AEF36180.1| DNA polymerase III alpha subunit DnaE1 [Mycobacterium sp. JDM601] Length=1179 Score = 2105 bits (5455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1021/1177 (87%), Positives = 1092/1177 (93%), Gaps = 0/1177 (0%) Query 7 GSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGI 66 GSSFVHLHNHTEYSMLDGAAKI PMLAE +RL MPA+GMTDHGNMFGASEFYN+AT AGI Sbjct 2 GSSFVHLHNHTEYSMLDGAAKIAPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATAAGI 61 Query 67 KPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSS 126 KPIIGVEAYIAPGSRFDTRR+ WGDP QK+DDVSGSGSYTHLTM+AENATGLRNLFKLSS Sbjct 62 KPIIGVEAYIAPGSRFDTRRVHWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFKLSS 121 Query 127 HASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIV 186 ASFEGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLGQDREALE+AAKWREI Sbjct 122 LASFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIF 181 Query 187 GPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQT 246 GP NYFLE+MDHGL IERRVRDGLL +GR L IP LATNDCHYVTRDA+ NHEALLC+QT Sbjct 182 GPQNYFLEVMDHGLAIERRVRDGLLAVGRKLGIPALATNDCHYVTRDASQNHEALLCIQT 241 Query 247 GKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRM 306 GKTLSDP RFKFDGDGYYLKSAAEMR +WDD++P ACDSTLLIAERVQSYADVW PRDRM Sbjct 242 GKTLSDPTRFKFDGDGYYLKSAAEMRALWDDQLPQACDSTLLIAERVQSYADVWAPRDRM 301 Query 307 PVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVAD 366 PVFPVPDGHDQ SWLRHEV AGL+RRF AG P Y +RAAYEIDVIC KGFPSYFLIVAD Sbjct 302 PVFPVPDGHDQGSWLRHEVAAGLQRRFSAGVPAEYTDRAAYEIDVICGKGFPSYFLIVAD 361 Query 367 LISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDF 426 LI+YARS IRVGPGRGSAAGSLVAYALGIT+IDP+PHGLLFERFLNPER S PDIDIDF Sbjct 362 LINYARSINIRVGPGRGSAAGSLVAYALGITNIDPLPHGLLFERFLNPERPSAPDIDIDF 421 Query 427 DDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALP 486 DDRRRGEMVRYAA++WG DRVAQVITFGTIKTKAALKDSAR+HYGQPG+AIADRITKALP Sbjct 422 DDRRRGEMVRYAAERWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGYAIADRITKALP 481 Query 487 PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACA 546 P IMAKDIPLSGITDP+HERYKEAAEVR LI+TDPDVRTIY+TARGLEGL+RNAGVHACA Sbjct 482 PPIMAKDIPLSGITDPNHERYKEAAEVRTLIDTDPDVRTIYETARGLEGLVRNAGVHACA 541 Query 547 VIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRA 606 VIMSSEPL + IPLWKRPQDGAIITGWDYP+CE IGLLKMDFLGLRNLTIIGD ++N++A Sbjct 542 VIMSSEPLIDVIPLWKRPQDGAIITGWDYPSCEEIGLLKMDFLGLRNLTIIGDCLENIKA 601 Query 607 NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALY 666 NRGIDLDLESVP+DD ATYELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALY Sbjct 602 NRGIDLDLESVPMDDPATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALY 661 Query 667 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVAS 726 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIM IAQKVAS Sbjct 662 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMFIAQKVAS 721 Query 727 YSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKS 786 Y++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKS Sbjct 722 YTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFNKS 781 Query 787 HAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES 846 HAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAA+YLADCR+LGITVLPPDVNES Sbjct 782 HAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRRLGITVLPPDVNES 841 Query 847 GLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTE 906 LNFASVG DIRYGLGAVRNVGANVVGSL+ TR KG+FTDFSDYLNKIDI+ACNKKVTE Sbjct 842 ELNFASVGSDIRYGLGAVRNVGANVVGSLIATRTHKGRFTDFSDYLNKIDIAACNKKVTE 901 Query 907 SLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTI 966 SLIKAGAFDSLGH RKGLFLVH+DAVDSVLGTKKA+A+GQFDLFG D + AD VF I Sbjct 902 SLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAQAMGQFDLFGGGDGESAGADAVFGI 961 Query 967 KVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRV 1026 +VPD+EW DKHKLALEREMLGLYVSGHPLNG+AHLLAAQVDTAIPAIL+GD+ +D QVRV Sbjct 962 RVPDEEWADKHKLALEREMLGLYVSGHPLNGIAHLLAAQVDTAIPAILEGDIASDTQVRV 1021 Query 1027 GGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAV 1086 GGILASVNRRVNKNG+PWASAQLEDLTGGIEVMFFP TYS+YGA++VDDAVVLV+AKV + Sbjct 1022 GGILASVNRRVNKNGLPWASAQLEDLTGGIEVMFFPQTYSAYGAEVVDDAVVLVSAKVNI 1081 Query 1087 RDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRL 1146 RDDRI+LIAN+L VPDFS +RPLAVSLPTRQCT DKVSALKQVL RHPGT+QV LRL Sbjct 1082 RDDRISLIANELVVPDFSANAADRPLAVSLPTRQCTMDKVSALKQVLTRHPGTAQVQLRL 1141 Query 1147 ISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 ISG+RIT L LD SLRVTPS ALMGDLK LLGPGCLG Sbjct 1142 ISGERITVLELDPSLRVTPSSALMGDLKALLGPGCLG 1178 >gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [Mycobacterium vanbaalenii PYR-1] gi|119956579|gb|ABM13584.1| DNA polymerase III, alpha subunit [Mycobacterium vanbaalenii PYR-1] Length=1182 Score = 2080 bits (5389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1007/1178 (86%), Positives = 1089/1178 (93%), Gaps = 3/1178 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ PMLAE +RL MPA+GMTDHGNMFGASEFYN+AT AGIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAP SRF+T+R+LWGDPSQK+DDVSG GSYTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYIAPASRFETKRVLWGDPSQKSDDVSGGGSYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 SFEGQL KW+RMDAE+IAEHAEGII TTGCPSGEVQTRLRLG DREALEAAA+WREI GP Sbjct 124 SFEGQLGKWARMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFGP 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N+FLELMDHGL IERRVR+GLL+IG+ L IPPLATNDCHYVTRDAA NHEALLC+QTGK Sbjct 184 ENFFLELMDHGLDIERRVREGLLDIGQKLGIPPLATNDCHYVTRDAAQNHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDPNRFKFDGDGY+LKSAAEMR +WD +VPGACDSTLLIAERVQSYADVWTP+DRMP+ Sbjct 244 TLSDPNRFKFDGDGYFLKSAAEMRALWDGQVPGACDSTLLIAERVQSYADVWTPKDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLR-RRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIVAD 366 FPVP+GHDQ SWL HEV GL+ RRF P P Y +RA YEI VIC KGFP+YFLIVAD Sbjct 304 FPVPEGHDQGSWLTHEVMTGLQERRFHGAPVPQEYIDRAQYEIKVICDKGFPAYFLIVAD 363 Query 367 LISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDF 426 LI+YARS GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER S PDIDIDF Sbjct 364 LINYARSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPDIDIDF 423 Query 427 DDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALP 486 DDRRRGEM+RYAA+KWG DRVAQVITFGTIKTKAALKDSAR+HYGQPGFAIADRITKALP Sbjct 424 DDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRITKALP 483 Query 487 PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACA 546 P IMAKDIP+SGITDP+HERYKEAAEVR LI+TDPDVRTIY+TARGLEGL+RNAGVHACA Sbjct 484 PPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAGVHACA 543 Query 547 VIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRA 606 VIMSSEPL +AIPLWKRPQDGA+ITGWDYP+CEAIGLLKMDFLGLRNLTIIGD I+N++A Sbjct 544 VIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCIENIKA 603 Query 607 NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALY 666 NRGID+DLES+ LDD YELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+ALY Sbjct 604 NRGIDVDLESLTLDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLALY 663 Query 667 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVAS 726 RPGPMGMNAHNDYADRKN RQAIKPIHPELEEPL++IL+ETYGLIVYQEQIM IAQKVAS Sbjct 664 RPGPMGMNAHNDYADRKNGRQAIKPIHPELEEPLKDILSETYGLIVYQEQIMFIAQKVAS 723 Query 727 YSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKS 786 YS+ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAFNKS Sbjct 724 YSMGKADALRKAMGKKKLEVLEAEYQGFKEGMTANGFSEKAVKALWDTILPFAGYAFNKS 783 Query 787 HAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES 846 HAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR+LGITVLPPDVNES Sbjct 784 HAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLPPDVNES 843 Query 847 GLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTE 906 NFASVG DIR+GLGAVRNVGANVV SL+ TR +KGKF DFSDYLNKIDI+ACNKKVTE Sbjct 844 VQNFASVGDDIRFGLGAVRNVGANVVSSLVATRKEKGKFADFSDYLNKIDIAACNKKVTE 903 Query 907 SLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND-DGTGTADPVFT 965 SL+KAGAFDSLGH RKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG D G D FT Sbjct 904 SLVKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGADGSGADAGDSAFT 963 Query 966 IKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVR 1025 IKVPD+EWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT IPAILDGDV ND QVR Sbjct 964 IKVPDEEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVANDTQVR 1023 Query 1026 VGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVA 1085 VGGILASVNRRVNKNG+PWASAQ+EDLTGGIEV+FFP TYS +GA+I DD VVLV AKVA Sbjct 1024 VGGILASVNRRVNKNGLPWASAQIEDLTGGIEVLFFPQTYSMFGAEIADDVVVLVGAKVA 1083 Query 1086 VRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLR 1145 +RDDRI+LIAN+L VPDFS+A V RP+AVSLPTRQCT DKV+ALKQVLARHPGT+QVHLR Sbjct 1084 IRDDRISLIANELVVPDFSSANVNRPVAVSLPTRQCTVDKVTALKQVLARHPGTAQVHLR 1143 Query 1146 LISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 LISG+RITTL LDQSLRVTPS ALMGDLKELLGPGCLG Sbjct 1144 LISGERITTLELDQSLRVTPSSALMGDLKELLGPGCLG 1181 >gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118171126|gb|ABK72022.1| DNA polymerase III alpha subunit [Mycobacterium smegmatis str. MC2 155] Length=1184 Score = 2079 bits (5386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1025/1186 (87%), Positives = 1098/1186 (93%), Gaps = 5/1186 (0%) Query 1 MSGSSAGSS--FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFY 58 MSG+ SS FVHLHNHTEYSMLDGAAKITPMLAE +RL MPA+GMTDHGNMFGASEFY Sbjct 1 MSGTDGRSSGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFY 60 Query 59 NSATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGL 118 NSATKAGIKPIIG+EAYIAPGSRFDT+R+ WGDP QK DDVSGSG+YTH+TM+AENATGL Sbjct 61 NSATKAGIKPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGL 120 Query 119 RNLFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEA 178 RNLFKLSS ASFEGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLG +REALEA Sbjct 121 RNLFKLSSLASFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHEREALEA 180 Query 179 AAKWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNH 238 AAKWREI GP+N+FLELMDHGL IERRVR+GLLEIGR L IPPLATNDCHYVTR+AA NH Sbjct 181 AAKWREIFGPENFFLELMDHGLDIERRVREGLLEIGRKLGIPPLATNDCHYVTREAARNH 240 Query 239 EALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYAD 298 EALLCVQTGKTLSDP RFKFDGDGY+LKSA EMR +WD +VPGACDSTLLI ERVQSYAD Sbjct 241 EALLCVQTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYAD 300 Query 299 VWTPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGF 357 VW PRDRMPVFPVP+GHDQASWL HEV AGL RRF GP P+ Y RA YEI VIC KGF Sbjct 301 VWEPRDRMPVFPVPEGHDQASWLTHEVKAGLERRFRGGPVPEEYTTRAEYEIKVICDKGF 360 Query 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417 PSYFLIVADLI+YARS GIRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER Sbjct 361 PSYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 420 Query 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477 S PDIDIDFDDRRRGEM+RYAA++WG +RVAQVITFGTIKTKAALKDSAR+++GQPGFAI Sbjct 421 SAPDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQPGFAI 480 Query 478 ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537 ADRITKALPP IMAKDIPLSGITDP+HERYKEAAEVRGLI+TDPDVRTIY+TARGLEGL+ Sbjct 481 ADRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGLEGLV 540 Query 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597 RNAGVHACAVIMSSEPL +AIPLWKRPQDGAIITGWDYP+CEAIGLLKMDFLGLRNLTII Sbjct 541 RNAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 600 Query 598 GDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFE 657 GDAI N++ANRGIDLDLE++PLDD A YELL RGDTLGVFQLDGGPMRDLLRRMQPTGF Sbjct 601 GDAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQPTGFN 660 Query 658 DVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQI 717 D+VAV+ALYRPGPMGMNAHNDYADRKN RQ IKPIHPELEEPL++ILAETYGLIVYQEQI Sbjct 661 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQI 720 Query 718 MRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILP 777 M IAQKVASY++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILP Sbjct 721 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILP 780 Query 778 FADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 837 FA YAFNKSHAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR+LGIT Sbjct 781 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGIT 840 Query 838 VLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDI 897 VLPPDVNES NFASVG DIR+GLGA+RNVGANVV SL++TR +KGKFTDFSDYLNKIDI Sbjct 841 VLPPDVNESEHNFASVGDDIRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYLNKIDI 900 Query 898 SACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGT 957 +ACNKKVTESLIKAGAFDSLGH RKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG +D T Sbjct 901 TACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGED-T 959 Query 958 GTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGD 1017 GT D VFTIKVPD+EWEDKHKLALEREMLGLYVSGHPLNGVAHLLA QVDT IPAILDGD Sbjct 960 GT-DAVFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGD 1018 Query 1018 VPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAV 1077 V NDAQV VGGILASVNRRVNKNG+PWASAQLEDLTGGIEV+FFP TYS +GADI DD V Sbjct 1019 VANDAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFPQTYSLFGADIADDVV 1078 Query 1078 VLVNAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHP 1137 VLV AKVA RDDRIALIA++L VPDFS+A+ +RPL+VSLPTRQCT DKV+ALKQVLA HP Sbjct 1079 VLVKAKVAARDDRIALIAHELIVPDFSSAQADRPLSVSLPTRQCTIDKVTALKQVLANHP 1138 Query 1138 GTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 GTSQVHLRLISG+RITTL LDQSLRVTPS ALMGDLK LLGPGCLG Sbjct 1139 GTSQVHLRLISGERITTLELDQSLRVTPSSALMGDLKALLGPGCLG 1184 >gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [Mycobacterium sp. MCS] gi|119869179|ref|YP_939131.1| DNA polymerase III subunit alpha [Mycobacterium sp. KMS] gi|126435686|ref|YP_001071377.1| DNA polymerase III subunit alpha [Mycobacterium sp. JLS] gi|108770472|gb|ABG09194.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha subunit [Mycobacterium sp. MCS] gi|119695268|gb|ABL92341.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS] gi|126235486|gb|ABN98886.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha subunit [Mycobacterium sp. JLS] Length=1191 Score = 2060 bits (5336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1009/1179 (86%), Positives = 1086/1179 (93%), Gaps = 5/1179 (0%) Query 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69 FVHLHNHTEYSMLDGAAK+ PMLAE +RL MPA+GMTDHGNMFGASEFYN+AT AGIKPI Sbjct 12 FVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKPI 71 Query 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129 IG+EAYIAP SRF+T+R+LWGDPSQK+DDVSGSGSYTH+TM+AENATGLRNLFKLSS AS Sbjct 72 IGIEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLAS 131 Query 130 FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189 FEGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLG REALEAAAKWREI GP Sbjct 132 FEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHQREALEAAAKWREIFGPQ 191 Query 190 NYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKT 249 N+FLELMDHGL IERRVR+GLLEIG+ L IPPLATNDCHYVTRDA+ NHEALLC+QTGKT Sbjct 192 NFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTGKT 251 Query 250 LSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVF 309 LSDP RFKFDGDGYYLKSAAEMR +WD +VPGACDSTLLIAERVQSYADVW PRDRMP+F Sbjct 252 LSDPTRFKFDGDGYYLKSAAEMRALWDSQVPGACDSTLLIAERVQSYADVWAPRDRMPIF 311 Query 310 PVPDGHDQASWLRHEVDAGLRRRFPAGP----PDGYRERAAYEIDVICSKGFPSYFLIVA 365 PVP+GHDQASWL HEV AGL+RRF A P+ Y ERA YEI VIC KGFPSYFLIVA Sbjct 312 PVPEGHDQASWLHHEVMAGLKRRFSAVSGGVVPNDYIERAEYEIKVICDKGFPSYFLIVA 371 Query 366 DLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDID 425 DLI+YA+S IRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S PDIDID Sbjct 372 DLINYAKSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDID 431 Query 426 FDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKAL 485 FDDRRRGEM+RYAA+KWG DRVAQVITFGTIKTKAALKDSAR+HYGQPGFAIADRITKAL Sbjct 432 FDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRITKAL 491 Query 486 PPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHAC 545 PP IMAKDIP+SGITDP+HERYKEAAEVR LI+TDPDVRTIY+TARGLEGL+RNAGVHAC Sbjct 492 PPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAGVHAC 551 Query 546 AVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVR 605 AVIMSSEPL +AIPLW+RPQDGA+ITGWDYP+CEAIGLLKMDFLGLRNLTIIGD I+N++ Sbjct 552 AVIMSSEPLIDAIPLWRRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCIENIK 611 Query 606 ANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIAL 665 ANRG+DLDLES+ LDD YELLGRGDTLGVFQLDGGPMRDLLRRMQPT F D+VAV+AL Sbjct 612 ANRGVDLDLESLALDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLAL 671 Query 666 YRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVA 725 YRPGPMGMNAHNDYADRKN RQ IKPIHPELEEPL+EILAETYGLIVYQEQIM IAQKVA Sbjct 672 YRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKEILAETYGLIVYQEQIMFIAQKVA 731 Query 726 SYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNK 785 SY++ +AD LRKAMGKKK EVLE E++GF +GM ANGFS AA+KALWDTILPFA YAFNK Sbjct 732 SYTMGKADALRKAMGKKKLEVLEAEYQGFREGMTANGFSEAAVKALWDTILPFAGYAFNK 791 Query 786 SHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNE 845 SHAAGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR+LGITVLPPDVNE Sbjct 792 SHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLPPDVNE 851 Query 846 SGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVT 905 S NFASVG DIR+GLGAVRNVGANVV SL+ TR +KGK++DFSDYLNKIDI+ACNKKVT Sbjct 852 SVQNFASVGDDIRFGLGAVRNVGANVVASLVNTRAEKGKYSDFSDYLNKIDIAACNKKVT 911 Query 906 ESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND-DGTGTADPVF 964 ESLIKAGAFDSLGH RKGLFL+H+DAVDSVLGTKKAEA+GQFDLFGS D G D F Sbjct 912 ESLIKAGAFDSLGHPRKGLFLIHTDAVDSVLGTKKAEAMGQFDLFGSGDGSGADAGDSAF 971 Query 965 TIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQV 1024 +IKVPD+EWEDKHKLALEREMLGLYVSGHPLNGVAHLLA QVDT IPAILDGDV NDAQV Sbjct 972 SIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGDVANDAQV 1031 Query 1025 RVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKV 1084 VGGILASVNRRVNKNG+PWASAQLEDLTGGIEV+FFP TYS +GA+I DD VVLV AKV Sbjct 1032 LVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFPQTYSVFGAEIADDVVVLVKAKV 1091 Query 1085 AVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHL 1144 A RDDRIALIA++L VPDFS+A+ +RPLAVSLPTRQCT DKV+ALKQVLA HPGTSQVHL Sbjct 1092 AARDDRIALIAHELVVPDFSSAQADRPLAVSLPTRQCTVDKVTALKQVLANHPGTSQVHL 1151 Query 1145 RLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 RLISG+RITTL LDQSLRVTPS ALMGDLK LLGPGCLG Sbjct 1152 RLISGERITTLELDQSLRVTPSSALMGDLKALLGPGCLG 1190 >gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alpha [Mycobacterium gilvum PYR-GCK] gi|315444554|ref|YP_004077433.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1] gi|145216706|gb|ABP46110.1| DNA polymerase III, alpha subunit [Mycobacterium gilvum PYR-GCK] gi|315262857|gb|ADT99598.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1] Length=1183 Score = 2058 bits (5333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1001/1180 (85%), Positives = 1085/1180 (92%), Gaps = 6/1180 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ PMLAE +RL MPA+GMTDHGNMFGASEFYN+AT AGIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAP SRFDT+R+LWGDP QK+DDVSGSGSYTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 SFEGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLG DREALEAAA+WREI GP Sbjct 124 SFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFGP 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N+FLELMDHGL IERRVR+GLLEIG+ L IPPLATNDCHYVTRDA+ NHEALLC+QTGK Sbjct 184 ENFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDPNRFKFDGDGYYLKSAAEMR +WD +VPGACDSTLLIAERVQ Y DVW P+DRMPV Sbjct 244 TLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPKDRMPV 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAG-----PPDGYRERAAYEIDVICSKGFPSYFLI 363 FPVP+GHDQ SWL HEV AGL RRF A PP+ Y ERA YEI VIC KGFP+YFLI Sbjct 304 FPVPEGHDQGSWLTHEVMAGLERRFSAAAGGQVPPE-YIERADYEIKVICDKGFPAYFLI 362 Query 364 VADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDID 423 VADLI+YA+S GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER S PDID Sbjct 363 VADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPDID 422 Query 424 IDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITK 483 IDFDDRRRGEM+RYAA+KWG DRVAQVITFGTIKTKAALKDSAR+HYGQPGFAIADRITK Sbjct 423 IDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRITK 482 Query 484 ALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVH 543 ALPP IMAKDIP+SGITDP+HERYKEAAEVR LI+TDPDVRTIY+TARGLEGL+RNAGVH Sbjct 483 ALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAGVH 542 Query 544 ACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDN 603 ACAVIMSSEPL +AIPLWKRPQDGA+ITGWDYP+CEAIGLLKMDFLGLRNLTIIGD I+N Sbjct 543 ACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCIEN 602 Query 604 VRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVI 663 ++ANRG+D+DLES+ LDD YELLGRGDTLGVFQLDG MRDLLRRMQPT F D+VAV+ Sbjct 603 IKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQPTEFNDIVAVL 662 Query 664 ALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQK 723 ALYRPGPMGMNAHNDYADRKN RQ IKPIHPELEEPL++ILAETYGLIVYQEQIM IAQK Sbjct 663 ALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQIMFIAQK 722 Query 724 VASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAF 783 VASYS+ +AD LRKAMGKKK EVLE E++GF +GM ANGFS A+KALWDTILPFA YAF Sbjct 723 VASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILPFAGYAF 782 Query 784 NKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDV 843 NKSHAAGYG+VSYWTAYLKANY AEYMAGLLTSVGDDKDKAA+YLADCR+LGITVLPPDV Sbjct 783 NKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRRLGITVLPPDV 842 Query 844 NESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKK 903 NES NFASVG DIR+GLGAVRNVGANVV SL+ TR +KGK+TDFSDYLNKIDI+AC KK Sbjct 843 NESVQNFASVGDDIRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYLNKIDITACTKK 902 Query 904 VTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPV 963 VTESLIKAGAFDSLGH RKGLFLVH+DAVDSVLGTKKAEA+GQFDLFG DD T D Sbjct 903 VTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGDDDGDTGDSA 962 Query 964 FTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQ 1023 FTIKVPD+EWEDKHKLALEREMLGLYVSGHPLNG+AHLL AQVDT IPAIL+G +PNDAQ Sbjct 963 FTIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGIAHLLTAQVDTQIPAILEGAIPNDAQ 1022 Query 1024 VRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAK 1083 VRVGGILASVNRRVNKNG+PWASAQ+EDL+GGIEV+FFP TYS +GA+I DD VVLV AK Sbjct 1023 VRVGGILASVNRRVNKNGLPWASAQIEDLSGGIEVLFFPQTYSMFGAEIADDVVVLVGAK 1082 Query 1084 VAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVH 1143 VA RDDRI+LIAN+L VPDF++A+V RP+AVSLPTRQCT DKV+ALKQVLARHPGT+QVH Sbjct 1083 VAKRDDRISLIANELIVPDFTSAQVNRPVAVSLPTRQCTVDKVTALKQVLARHPGTAQVH 1142 Query 1144 LRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 LRLISG+RITTL LDQSLRVTPS ALMGDLKELLGPGCLG Sbjct 1143 LRLISGERITTLELDQSLRVTPSSALMGDLKELLGPGCLG 1182 >gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alpha [Mycobacterium abscessus ATCC 19977] gi|169241748|emb|CAM62776.1| DNA polymerase III alpha subunit [Mycobacterium abscessus] Length=1185 Score = 2012 bits (5212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 987/1183 (84%), Positives = 1072/1183 (91%), Gaps = 3/1183 (0%) Query 4 SSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATK 63 SS+ SSFVHLHNHTEYSMLDGAAKI PMLAEVERLGM AVGMTDHGNM+GASEFYN A Sbjct 2 SSSNSSFVHLHNHTEYSMLDGAAKIKPMLAEVERLGMSAVGMTDHGNMYGASEFYNVAAA 61 Query 64 AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFK 123 G+KPIIG+EAYIAP SRFDT+R+ WGDP QK+DDVSGSGSYTH+TM+AENATGLRNLFK Sbjct 62 TGVKPIIGIEAYIAPASRFDTKRVFWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFK 121 Query 124 LSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWR 183 LSS ASFEGQL KW+RMDA+LIAEHA GII TTGCPSGEVQTRLRLGQ+ EAL AAAKW+ Sbjct 122 LSSLASFEGQLGKWARMDADLIAEHASGIIATTGCPSGEVQTRLRLGQESEALAAAAKWQ 181 Query 184 EIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLC 243 +I G DN+FLELMDHGL+IERRVR+GLLE+G+ L IPPLATNDCHYVT+D AHNHEALLC Sbjct 182 DIFGKDNFFLELMDHGLSIERRVREGLLEVGKKLGIPPLATNDCHYVTKDHAHNHEALLC 241 Query 244 VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR 303 VQTGKTLSDP RFKFDGDGYYLK A+EMR +WDD VPGACD+TLLIAERVQSY DVW + Sbjct 242 VQTGKTLSDPTRFKFDGDGYYLKPASEMRDLWDDAVPGACDNTLLIAERVQSYEDVWNFK 301 Query 304 DRMPVFPVPDGHDQASWLRHEVDAGLRRRF---PAGPPDGYRERAAYEIDVICSKGFPSY 360 DRMP+FPVP+G DQ SWLR EVD GL RRF P G PD Y RA YE+DVI KGFP+Y Sbjct 302 DRMPIFPVPEGEDQDSWLRKEVDRGLERRFEGVPGGVPDEYFTRAHYELDVIKQKGFPAY 361 Query 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 FL+V DL+S+A+ GIRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER S P Sbjct 362 FLVVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAP 421 Query 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 DIDIDFDDRRRGEMVRYA +KWG DRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR Sbjct 422 DIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 481 Query 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 ITKALPP IMAKDIP+ GIT+P HERYKEAAEVR LI+TDPDVR IYQTA GLEGLIRNA Sbjct 482 ITKALPPPIMAKDIPVWGITNPEHERYKEAAEVRTLIDTDPDVRNIYQTALGLEGLIRNA 541 Query 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 GVHACAVIMSSEPLT+AIPLWKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDA Sbjct 542 GVHACAVIMSSEPLTDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDA 601 Query 601 IDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVV 660 +DN++ANRGIDLDL+ +PLDD ATYELL RGDTLGVFQLDGGPMRDLLRRMQPTGF D+V Sbjct 602 LDNIKANRGIDLDLDHLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQPTGFNDIV 661 Query 661 AVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRI 720 AV+ALYRPGPMGMNAHNDYADRKN RQ IKPIHPELEEPL++ILAET+GLIVYQEQIM I Sbjct 662 AVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETFGLIVYQEQIMFI 721 Query 721 AQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFAD 780 AQKVASYS+ +AD LRKAMGKKK EVLE E++GF +GM NGFS A+KALWDTILPFA Sbjct 722 AQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFYEGMTNNGFSEKAVKALWDTILPFAG 781 Query 781 YAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLP 840 YAFNKSHAAGYG+VS+WTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR+LGITVLP Sbjct 782 YAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLP 841 Query 841 PDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISAC 900 PDVNES NFASVG+DIRYGLG VRNVGANVV SL+ TR +KG FTDFSDYL+KIDI+AC Sbjct 842 PDVNESVHNFASVGEDIRYGLGGVRNVGANVVQSLIATREEKGAFTDFSDYLHKIDIAAC 901 Query 901 NKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTA 960 NKKVTESL+KAGAFDSLGH RKGLFLV SDAVDSVLGTKKAEA+GQFDLFG + + A Sbjct 902 NKKVTESLVKAGAFDSLGHPRKGLFLVQSDAVDSVLGTKKAEAMGQFDLFGGGGEDSVPA 961 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 +F IKVPDDEWE+KHKLALEREMLGLYVSGHPLNGVAHLL+ Q DT IPAILDG+V N Sbjct 962 SDIFAIKVPDDEWEEKHKLALEREMLGLYVSGHPLNGVAHLLSRQTDTQIPAILDGEVAN 1021 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLV 1080 DA V+VGGILASVNRRVNKNGMPWASAQLEDLTGGIEV+FFP YS YGADI DDAVVLV Sbjct 1022 DAVVKVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVLFFPQAYSVYGADIADDAVVLV 1081 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTS 1140 NAKVA+RDDR++LIANDL VPDFS A +RP+AV++PTRQCT DKV+ALKQVL RHPGT+ Sbjct 1082 NAKVAIRDDRVSLIANDLVVPDFSQAADDRPVAVTMPTRQCTIDKVTALKQVLTRHPGTN 1141 Query 1141 QVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 QVHLRLISG+R+TTL LDQSLRVTPS ALMGDLK LLGPGCLG Sbjct 1142 QVHLRLISGERVTTLELDQSLRVTPSSALMGDLKALLGPGCLG 1184 >gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [Nocardia farcinica IFM 10152] gi|54015276|dbj|BAD56646.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM 10152] Length=1196 Score = 1937 bits (5018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 937/1182 (80%), Positives = 1037/1182 (88%), Gaps = 2/1182 (0%) Query 4 SSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATK 63 +++ SFVHLHNHTEYSMLDGAAKI+P+ E +RLGM AVGMTDHGNM+GASEFYNSA K Sbjct 16 AASSGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKK 75 Query 64 AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFK 123 G+KPIIG+EAYIAPGSRFDT+R+ WGDP QK DDVSGSG+YTH+TM+AENATGLRNLFK Sbjct 76 HGLKPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFK 135 Query 124 LSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWR 183 LSS AS EGQL KW+RMDAE+IA+HAEGII TTGCPSGEVQTRLRLG +REALEAAAKW+ Sbjct 136 LSSLASIEGQLGKWARMDAEIIAQHAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQ 195 Query 184 EIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLC 243 EI GPDN+FLE+MDHGL+IERRVR+GLL+IGR L IPPLATNDCHYV A NHEALLC Sbjct 196 EIFGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLC 255 Query 244 VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR 303 VQTGKTLSDP RFKFDG GYYLKS EMR IWD EVPGACD+TLLI ERVQSY VW R Sbjct 256 VQTGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHR 315 Query 304 DRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLI 363 DRMP+FPVP+G QASWL EV GL RRFP G P+ Y RA YE+DVIC GFP+YFL+ Sbjct 316 DRMPIFPVPEGETQASWLHKEVMRGLERRFPNGVPEEYLRRAEYELDVICEMGFPAYFLV 375 Query 364 VADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDID 423 V DLI++AR GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER SMPDID Sbjct 376 VGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDID 435 Query 424 IDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITK 483 IDFDDRRRGEMVRYA +KWG DRVAQVITFGTIKTKAA+KDSAR+ +GQPGFAIAD+I+K Sbjct 436 IDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQISK 495 Query 484 ALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVH 543 ALPP IMAKDIPLSGI DP HERYKEAAEVR LI +PDV IY+TARGLEGLIRNAGVH Sbjct 496 ALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEGLIRNAGVH 555 Query 544 ACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDN 603 ACAVIMSSEPL +AIPLWKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDA+DN Sbjct 556 ACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALDN 615 Query 604 VRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVI 663 ++ANRGIDLD++++PLDD ATYELL RGDTLGVFQLDG MRDLLRRMQPTGFED+VAV+ Sbjct 616 IKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVL 675 Query 664 ALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQK 723 ALYRPGPMGMNAHNDYADRKN RQ +KPIHPELEEPL++ILA+TYGLIVYQEQIM+IAQK Sbjct 676 ALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQIMQIAQK 735 Query 724 VASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAF 783 VA YSL RADILR+AMGKKK EVLE EFEGF GM NGFS AIKALWDTILPFA YAF Sbjct 736 VAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTILPFAGYAF 795 Query 784 NKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDV 843 NKSHAAGYG+VS+WTAYLKANYPAEYMAGLLTSVGDDKDKAAVYL+DCR+LGITVLPPDV Sbjct 796 NKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLGITVLPPDV 855 Query 844 NESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKK 903 NES NFASVG+DIR+GLGAVRNVGANVV S++Q R +K KFTDFSDYLNKID AC KK Sbjct 856 NESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKIDAIACTKK 915 Query 904 VTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPV 963 VTESLIKAGAFDSLGH RKGL L+HSDA+D+V+ TKKAEA+GQFDLFG D + V Sbjct 916 VTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFGGM-DADESVTSV 974 Query 964 FTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQ 1023 F +KVPD+EWE KHKLALEREMLGLYVSGHPLNGV H+LAAQ DT IPAIL+GDV + AQ Sbjct 975 FNVKVPDEEWETKHKLALEREMLGLYVSGHPLNGVEHVLAAQADTQIPAILEGDVKDGAQ 1034 Query 1024 VRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAK 1083 V +GGILASVNRR+NKNG+ WASAQLEDLTGGIEV+FFP YS YGAD+V+DAVVLV A+ Sbjct 1035 VTIGGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFPQAYSVYGADVVEDAVVLVKAR 1094 Query 1084 VAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVH 1143 V+VRDDRI+LIANDL VPD S V +PLAV++ +R CT DK+ LK+VL RHPGTS VH Sbjct 1095 VSVRDDRISLIANDLAVPDLSAIGVAKPLAVTITSRMCTPDKIGELKRVLTRHPGTSDVH 1154 Query 1144 LRLISG-DRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 +R + D+ T L L SLRV+PS AL GDLK LLGP CL S Sbjct 1155 VRYVGARDKTTMLKLSDSLRVSPSSALFGDLKALLGPSCLTS 1196 >gi|312140121|ref|YP_004007457.1| DNA polymerase III alpha subunit dnae1 [Rhodococcus equi 103S] gi|311889460|emb|CBH48777.1| DNA polymerase III alpha subunit DnaE1 [Rhodococcus equi 103S] Length=1178 Score = 1925 bits (4988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 921/1175 (79%), Positives = 1048/1175 (90%), Gaps = 3/1175 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ P+ E ERLGM AVGMTDHGNM+GASEFYNSA K GIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF+T+R+LWGDPSQK+DDVSGSG+YTH+TM+AEN+TGLRNLFKLSS A Sbjct 64 IIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW RMD ELIA HAEGII TTGCPSGE+QTRLRLG DREALEAAAKW+EI G Sbjct 124 SIEGQLGKWPRMDEELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 DN+FLELMDHGL+IERRVR+GLL IGR L IPPLATNDCHYVT+DAA NHEALLC+QTGK Sbjct 184 DNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSA EMR IWD EVPGACD+++LI ERVQ Y DVW RDRMP+ Sbjct 244 TLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVP+G QASWL EV GL RRFPAGPP Y ERA YEI VI GFP+YFL+V DLI Sbjct 304 FPVPEGETQASWLHKEVMRGLDRRFPAGPPREYIERAEYEIGVINQMGFPAYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++AR GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER SMPDIDIDFDD Sbjct 364 NHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA DKWG D+VAQVITFGTIKTKAA+KDSAR+ +GQPGFAIAD+ITKALPP Sbjct 424 RRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKALPPP 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDI +SGITDP HERYKEA EVR LI+++PDV IYQTA+GLEGLIRNAGVHACAVI Sbjct 484 IMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHACAVI 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDAI+N++ANR Sbjct 544 MSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIKANR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 G+D+DL+++PL+D ATYELL RGDTLGVFQLDG MRDLLRRMQPTGFED+VAV+ALYRP Sbjct 604 GVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMGMNAHNDYADRKN RQ +KPIHPELEEPL+EILA+T+GLIVYQEQIM+IAQKVA YS Sbjct 664 GPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQEQIMQIAQKVAGYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +AD+LR+AMGKKK+E+L++ ++GF++GM+ANGFS AAI ALWDT+LPFA YAFNKSHA Sbjct 724 LGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTVLPFAGYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VS+WTAYLKANYP+EYMAGLLTSVGDDKDKAAVYL+DCRK+GITVLPPDVN S + Sbjct 784 AGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVLPPDVNASRV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FASVG+DIR+GLGAVRNVGANVVGS++ R +KG FTDFSDYLNKID AC+KKVTESL Sbjct 844 DFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKIDALACSKKVTESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAG FDSLGH RKGL LVH+DA+D+V+GTKKAEA+GQFDLFG DD + VF +KV Sbjct 904 IKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFG-GDDADESITSVFNVKV 962 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 PD+EW+ KHKLALEREMLGLYVSGHPLNGV H+LAAQ DT+IP IL+GD+ + QV VGG Sbjct 963 PDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEGDIKDGTQVTVGG 1022 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 ILASVNRR+NKNG+ WASAQLEDL+GGIEV+FFP YS YG D+V+D+VVLV A+V++RD Sbjct 1023 ILASVNRRINKNGLTWASAQLEDLSGGIEVLFFPQAYSVYGMDVVEDSVVLVKARVSIRD 1082 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 DR++LIANDL VPD S V +P++VSLP RQCT +K+ AL+QVL++HPGT+ VH++LI Sbjct 1083 DRVSLIANDLAVPDLSAIGVAKPVSVSLPVRQCTKEKLGALRQVLSKHPGTADVHVKLI- 1141 Query 1149 GDRITTL-ALDQSLRVTPSPALMGDLKELLGPGCL 1182 G R TTL +D+ LRV PS +LMGDLK LLGP CL Sbjct 1142 GSRGTTLWKVDEVLRVEPSSSLMGDLKALLGPSCL 1176 >gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC 33707] gi|325554658|gb|EGD24332.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC 33707] Length=1178 Score = 1924 bits (4985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 920/1175 (79%), Positives = 1048/1175 (90%), Gaps = 3/1175 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ P+ E ERLGM AVGMTDHGNM+GASEFYNSA K GIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF+T+R+LWGDPSQK+DDVSGSG+YTH+TM+AEN+TGLRNLFKLSS A Sbjct 64 IIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW RMD ELIA HAEGII TTGCPSGE+QTRLRLG DREALEAAAKW+EI G Sbjct 124 SIEGQLGKWPRMDEELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 DN+FLELMDHGL+IERRVR+GLL IGR L IPPLATNDCHYVT+DAA NHEALLC+QTGK Sbjct 184 DNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSA EMR IWD EVPGACD+++LI ERVQ Y DVW RDRMP+ Sbjct 244 TLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVP+G QASWL EV GL RRFPAGPP Y ERA YEI VI GFP+YFL+V DLI Sbjct 304 FPVPEGETQASWLHKEVMRGLDRRFPAGPPREYIERAEYEIGVINQMGFPAYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++AR GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER SMPDIDIDFDD Sbjct 364 NHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA DKWG D+VAQVITFGTIKTKAA+KDSAR+ +GQPGFAIAD+ITKALPP Sbjct 424 RRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKALPPP 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDI +SGITDP HERYKEA EVR LI+++PDV IYQTA+GLEGLIRNAGVHACAVI Sbjct 484 IMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHACAVI 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDAI+N++ANR Sbjct 544 MSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIKANR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 G+D+DL+++PL+D ATYELL RGDTLGVFQLDG MRDLLRRMQPTGFED+VAV+ALYRP Sbjct 604 GVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMGMNAHNDYADRKN RQ +KPIHPELEEPL+EILA+T+GLIVYQEQIM+IAQKVA YS Sbjct 664 GPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQEQIMQIAQKVAGYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +AD+LR+AMGKKK+E+L++ ++GF++GM+ANGFS AAI ALWDT+LPFA YAFNKSHA Sbjct 724 LGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTVLPFAGYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VS+WTAYLKANYP+EYMAGLLTSVGDDKDKAAVYL+DCRK+GITVLPPDVN S + Sbjct 784 AGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVLPPDVNASRV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FASVG+DIR+GLGAVRNVGANVVGS++ R +KG FTDFSDYLNKID AC+KKVTESL Sbjct 844 DFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKIDALACSKKVTESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAG FDSLGH RKGL LVH+DA+D+V+GTKKAEA+GQFDLFG DD + VF +KV Sbjct 904 IKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFG-GDDADESITSVFNVKV 962 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 PD+EW+ KHKLALEREMLGLYVSGHPLNGV H+LAAQ DT+IP IL+GD+ + QV VGG Sbjct 963 PDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEGDIKDGTQVTVGG 1022 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 ILASVNRR+NKNG+ WASAQLEDL+GGIEV+FFP YS YG D+V+D+VVLV A+V++RD Sbjct 1023 ILASVNRRINKNGLTWASAQLEDLSGGIEVLFFPQAYSVYGMDVVEDSVVLVKARVSIRD 1082 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 DR++LIANDL VPD S V +P++VSLP RQCT +K+ AL+QVL++HPGT+ VH++LI Sbjct 1083 DRVSLIANDLAVPDLSAIGVAKPVSVSLPVRQCTKEKLGALRQVLSKHPGTADVHVKLI- 1141 Query 1149 GDRITTL-ALDQSLRVTPSPALMGDLKELLGPGCL 1182 G R T+L +D+ LRV PS +LMGDLK LLGP CL Sbjct 1142 GSRGTSLWKVDEVLRVEPSSSLMGDLKALLGPSCL 1176 >gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [Rhodococcus jostii RHA1] gi|110817612|gb|ABG92896.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus jostii RHA1] Length=1178 Score = 1914 bits (4958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 927/1174 (79%), Positives = 1037/1174 (89%), Gaps = 1/1174 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ P+ E ERLGM AVGMTDHGNM+GASEFYN A K GIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAP SRF+T+R+LWGD SQK+DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW+RMD ELIA H EGII TTGCPSGE+QTRLRLG DREALEAAAKW+EI G Sbjct 124 SIEGQLGKWARMDEELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 DN+FLELMDHGL+IERRVR+GLLEI + L IPPLATNDCHYVT++AA NHEALLC+QTGK Sbjct 184 DNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLK AAEMR +WDD+VPGACD+TLLIAERVQSY DVW DRMP+ Sbjct 244 TLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVP+G Q +WLR EV GL RRFP GPP+ Y RA YEI VI GFP+YFL+V DLI Sbjct 304 FPVPEGETQGTWLRKEVMRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++AR GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER SMPDIDIDFDD Sbjct 364 NHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA DKWG DRVAQVITFGTIKTKAA+KDSAR+ +GQPGFAIAD+ITKALPP Sbjct 424 RRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKALPPP 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDI +SGITDP+HERYKEA EVR LI+++PDV IYQTA+GLEGLIRNAGVHACAVI Sbjct 484 IMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHACAVI 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPL +AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDAIDN++ANR Sbjct 544 MSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIKANR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GIDLDL+++ LDD+ATYELL RGDTLGVFQLDG MRDLLRRMQPTGFED+VAV+ALYRP Sbjct 604 GIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMGMNAHNDYADRKN RQ +KPIHPELEEPL+EILA+TYGLIVYQEQIM+IAQKVA YS Sbjct 664 GPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVAGYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +ADILR+AMGKKK VLE+ + GF +GM AN FS AIKALWDTILPFA YAFNKSHA Sbjct 724 LGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VS+WT YLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK+GITVLPPDVNES + Sbjct 784 AGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVLPPDVNESEV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 NFASVG+DIR+G+GAVRNVGANVVGS+++ R +K KF DFSDYLNKID +AC+KKVTESL Sbjct 844 NFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVTESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAG FDSLGH RKGL LVH+DA+D+V+GTKKAEA+GQFDLFG DD + VF +K+ Sbjct 904 IKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFG-GDDADESISSVFNVKI 962 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 PD+EW+ KH+LALEREMLGLYVSGHPLNGV H+L+AQ DTAIP IL+GD+ + QV VGG Sbjct 963 PDEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTVGG 1022 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 ILASVNRR+NKNG+ WASAQLEDLTGGIEV+FFP YS YG D+ +D+VVLV A+V++RD Sbjct 1023 ILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTEDSVVLVKARVSIRD 1082 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 DRI+LIANDL VPD S V +PLAVSLP RQCT DK+ AL+QVL RHPGTS VH+RLI Sbjct 1083 DRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKLGALRQVLTRHPGTSDVHVRLIG 1142 Query 1149 GDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 G +T +D LRV PS ALMGDLK LLGP CL Sbjct 1143 GTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCL 1176 >gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alpha [Rhodococcus opacus B4] gi|226238696|dbj|BAH49044.1| DNA polymerase III alpha subunit [Rhodococcus opacus B4] Length=1178 Score = 1912 bits (4952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 924/1174 (79%), Positives = 1037/1174 (89%), Gaps = 1/1174 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ P+ E ERL M AVGMTDHGNM+GASEFYN A K GIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVGPLFEEAERLEMSAVGMTDHGNMYGASEFYNVAKKQGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF+T+R+LWGD SQK+DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW+RMD ELIA H EGII TTGCPSGE+QTRLRLG DREALEAAAKW+EI G Sbjct 124 SIEGQLGKWARMDEELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 DN+FLELMDHGL+IERRVR+GLLEI + L IPPLATNDCHYVT+DAA NHEALLC+QTGK Sbjct 184 DNFFLELMDHGLSIERRVREGLLEISKTLGIPPLATNDCHYVTKDAAENHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGY+LKSAAEMR +WDD+VPGACD+TLLIAERVQSY DVW DRMP+ Sbjct 244 TLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVP+G Q +WLR EV GL RRFP+GPP+ Y RA YEI VI GFP+YFL+V DLI Sbjct 304 FPVPEGETQGTWLRKEVMRGLDRRFPSGPPEEYLARADYEIGVILEMGFPAYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++AR GIRVGPGRGSAAGSLVAYA+GIT+IDPIPHGLLFERFLNPER SMPDIDIDFDD Sbjct 364 NHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA DKWG DRVAQVITFGTIKTKAA+KDSAR+ +GQPGFAIAD+ITKALPP Sbjct 424 RRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKALPPP 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDI +SGITDP+HERYKEA EVR LI+++PDV IYQTA+GLEGLIRNAGVHACAVI Sbjct 484 IMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHACAVI 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPL +AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDAIDN++ANR Sbjct 544 MSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIKANR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GI+LDL+++ LDD ATYELL RGDTLGVFQLDG MRDLLRRMQPTGFED+VAV+ALYRP Sbjct 604 GIELDLDTLELDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMGMNAHNDYADRKN RQ +KPIHPELEEPL+EILA+TYGLIVYQEQIM+IAQKVA YS Sbjct 664 GPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVAGYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +ADILR+AMGKKK VLE+ + GF +GM AN FS AIKALWDTILPFA YAFNKSHA Sbjct 724 LGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VS+WT YLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK+GITVLPPDVNES + Sbjct 784 AGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVLPPDVNESEV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 NFASVG+DIR+G+GAVRNVGANVVGS+++ R +K KF DFSDYLNKID +AC+KKVTESL Sbjct 844 NFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVTESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAG FDSLGH RKGL LVH+DA+D+V+GTKKAEA+GQFDLFG DD + VF +K+ Sbjct 904 IKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFG-GDDADESIASVFNVKI 962 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 P++EW+ KH+LALEREMLGLYVSGHPLNGV H+L+AQ DTAIP IL+GD+ + QV VGG Sbjct 963 PEEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTVGG 1022 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 ILASVNRR+NKNG+ WASAQLEDLTGGIEV+FFP YS YG D+ +D+VVLV A+V++RD Sbjct 1023 ILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTEDSVVLVKARVSIRD 1082 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 DRI+LIANDL VPD S V +PLAVSLP RQCT DK+ AL+QVL RHPGTS VH+RLI Sbjct 1083 DRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKLGALRQVLTRHPGTSDVHVRLIG 1142 Query 1149 GDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 G +T +D LRV PS ALMGDLK LLGP CL Sbjct 1143 GTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCL 1176 >gi|333919047|ref|YP_004492628.1| putative DNA polymerase III subunit alpha [Amycolicicoccus subflavus DQS3-9A1] gi|333481268|gb|AEF39828.1| Putative DNA polymerase III alpha subunit [Amycolicicoccus subflavus DQS3-9A1] Length=1191 Score = 1886 bits (4886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 909/1178 (78%), Positives = 1022/1178 (87%), Gaps = 7/1178 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ P+ AE +RLGM AVGMTDHGNMFGAS+FYN+A KA IKP Sbjct 18 SFVHLHNHTEYSMLDGAAKVKPLFAEAQRLGMTAVGMTDHGNMFGASDFYNAAVKADIKP 77 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF+ +R+ WGDPSQK+DDVSGSG+YTH+TM+A NATGLRNLF LSS A Sbjct 78 IIGIEAYVAPESRFNLKRVRWGDPSQKSDDVSGSGAYTHMTMVAANATGLRNLFTLSSLA 137 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW RMDAELIAEH+EGII TTGCPSGE+QTRLRLG +REALEAAAKW+EI GP Sbjct 138 SIEGQLGKWPRMDAELIAEHSEGIIATTGCPSGELQTRLRLGHEREALEAAAKWQEIFGP 197 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N+FLELMDHG++IERRVR+GLLE+GR L IPP+ TNDCHYVT D A +HEALLCVQTGK Sbjct 198 ENFFLELMDHGISIERRVREGLLEVGRKLGIPPIVTNDCHYVTVDQARSHEALLCVQTGK 257 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSAAEMR WD+EVPGACD+TLLIAERV+SY +VWT RDRMPV Sbjct 258 TLSDPTRFKFDGDGYYLKSAAEMRAAWDEEVPGACDNTLLIAERVESYKEVWTHRDRMPV 317 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVPDG QA++L +V GL RRFP P Y +RA YE+DVI GFP+YFL+V DL+ Sbjct 318 FPVPDGETQATFLYKQVHEGLERRFPGAVPPEYTKRADYELDVINQMGFPAYFLVVGDLV 377 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 +A GIRVGPGRGSAAGSLVA+ALGIT+IDPIPHGLLFERFLNPER SMPDIDIDFDD Sbjct 378 RHAGEVGIRVGPGRGSAAGSLVAFALGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDD 437 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA D+WG DRVAQVITFGTIKTKAA+KDSAR+ +GQPGFAIADRI+KALPP Sbjct 438 RRRGEMVRYATDRWGSDRVAQVITFGTIKTKAAIKDSARVLFGQPGFAIADRISKALPPP 497 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDIPL GI +P HERYKEA EVR LIETDPDVR IY+TA GLEGLIRNAGVHACAVI Sbjct 498 IMAKDIPLHGIMNPEHERYKEATEVRSLIETDPDVRKIYETAIGLEGLIRNAGVHACAVI 557 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPL EAIPLWKR QDGAIITGWDYP+CE IGLLKMDFLGLRNLT+IGDAI+N+++NR Sbjct 558 MSSEPLMEAIPLWKRQQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDAIENLKSNR 617 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GID+DL+++ LDD YELL RGDTLGVFQLDG MRDLLRRMQPTGFED+VAV+ALYRP Sbjct 618 GIDIDLDTLTLDDPKAYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALYRP 677 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMGMNAHNDYADRKN RQ ++PIHPELEEPL+EIL+ETYGLIVYQEQIM+IAQKVA YS Sbjct 678 GPMGMNAHNDYADRKNGRQEVRPIHPELEEPLKEILSETYGLIVYQEQIMQIAQKVAGYS 737 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L RADILR+AMGKKK EVL EF+GF +GM+ANGF AI ALWDTILPFA YAFNKSHA Sbjct 738 LGRADILRRAMGKKKAEVLAAEFDGFQEGMRANGFGDKAITALWDTILPFAGYAFNKSHA 797 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDKAA+YLADCRK+G+TVLPPDVNES Sbjct 798 AGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKIGVTVLPPDVNESEQ 857 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 NF SVG DIR+GLGAVRNVG+NVV S+++ RN+KG FT FSDYL K+D +AC KK ESL Sbjct 858 NFTSVGDDIRFGLGAVRNVGSNVVSSIIKGRNEKGSFTSFSDYLGKVDAAACGKKAIESL 917 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTAD---PVFT 965 IKAGAFDSL H RKGL L+HSDAVDSV+ TKKAEA+GQFDLFG G G D VF Sbjct 918 IKAGAFDSLDHPRKGLVLIHSDAVDSVMNTKKAEAIGQFDLFG----GGGADDEIASVFE 973 Query 966 IKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVR 1025 +KVP++EW+ KH+LALEREMLGLYVSGHPLNG+ HL+AAQ DT I AIL+G V + AQV Sbjct 974 VKVPEEEWDTKHRLALEREMLGLYVSGHPLNGIEHLIAAQTDTQITAILEGIVKDGAQVT 1033 Query 1026 VGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVA 1085 VGGI ASV RRVNKNG PWA+AQLEDL GIEVMFFP YS YG ++ +DA+VL+ ++ Sbjct 1034 VGGIFASVTRRVNKNGQPWAAAQLEDLEAGIEVMFFPQAYSVYGMEVTEDAIVLIRGRLK 1093 Query 1086 VRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLR 1145 V+DDRI++IANDL VPD S+ V +P+A+S+ TR CT DKV ALKQVL RHPG + VH+R Sbjct 1094 VQDDRISIIANDLVVPDLSDIGVAQPVALSMHTRMCTPDKVGALKQVLTRHPGQADVHVR 1153 Query 1146 LISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 L++GDR TTL LD RVTPS ALMGDLK LLGPGCLG Sbjct 1154 LMTGDRTTTLKLDDGYRVTPSSALMGDLKALLGPGCLG 1191 >gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] gi|229322713|gb|EEN88493.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] Length=1178 Score = 1856 bits (4807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 892/1174 (76%), Positives = 1016/1174 (87%), Gaps = 1/1174 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ M E RL M AVGMTDHGNM+GAS+FYN A AGIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAP SRF+T+R+LWGD SQK+DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW RMD ELIA HAEGII TTGCPSGE+QTRLRLG DREALEAAAKW+EI GP Sbjct 124 SIEGQLGKWPRMDEELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWGP 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 DN+FLELMDHGL+IERRVR+GLL+IG+ L IPPLATNDCHYVT+DAA NHEALLC+QTGK Sbjct 184 DNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSAAEMR IWD+EVPGACD+T+ I ERVQSY DVW DRMP+ Sbjct 244 TLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVP+GH Q ++LR EV GL RRFP+GPP Y RA YEI VI GFP+YFL+V DLI Sbjct 304 FPVPEGHTQQTFLRAEVMRGLDRRFPSGPPQEYLARADYEIGVINEMGFPAYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++A+ GIRVGPGRGSAAGSLVAYA+GIT+IDPIP+GLLFERFLNPER SMPDIDIDFDD Sbjct 364 NHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSMPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA DKWG+D+VAQVITFGTIKTKAA+KDSAR+ +G+PGFAIAD+ITKALPP Sbjct 424 RRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIADQITKALPPP 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDI +SGITDP HERYKEA EVR LI++ PDV IY+TA GLEGLIRNAGVHACAVI Sbjct 484 IMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRNAGVHACAVI 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGD ++N++ANR Sbjct 544 MSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDTLENIKANR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GIDLDL+++P+DD ATYELL RGDTLGVFQLDGG MR+LL+ MQPTGF D+VA +ALYRP Sbjct 604 GIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDIVAALALYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMG++AH YA RKN + +KPIHPELEEPL EIL+ETYGLI+YQEQIM++AQKVA Y+ Sbjct 664 GPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQLAQKVAGYT 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +AD+LR+AMGKKK LEK + GF GM N FS AAIKALWDT+LPFA YAFNKSH+ Sbjct 724 LGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFAGYAFNKSHS 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDK+A+YLADCRKLGITVLPPDVNES + Sbjct 784 AGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVLPPDVNESRV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FA+VG DIR+G+G+VRNVGANVV S+++ R +K KFTDFSDYL KID ACNKKVTESL Sbjct 844 DFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMACNKKVTESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAGAFDSLGH RKGL LVH+DA+DSV+ TKKAEA+GQFDLFG + + VF +K+ Sbjct 904 IKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGA-EADESITSVFDVKI 962 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 PD+EW+ KH+LALEREMLGLYVSGHPLNGV H+L Q DT+I AIL+G V + AQV +GG Sbjct 963 PDEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQDGAQVTLGG 1022 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 I+ASV+RRVNKNG+ W QLEDL GGIEV+FFP Y+ YG DI +DA+VLV A+V++RD Sbjct 1023 IIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFPQAYAVYGMDIAEDAIVLVKARVSIRD 1082 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 DR++LI NDL VPD S V RPL+VSLP RQCT DK+SALKQVL RHPGTS VH+RLI Sbjct 1083 DRMSLIGNDLAVPDISAIGVARPLSVSLPLRQCTKDKLSALKQVLTRHPGTSDVHVRLIG 1142 Query 1149 GDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 G I+ +D LRV PS ALMGDLK LLGP CL Sbjct 1143 GTEISLWKVDDVLRVEPSSALMGDLKALLGPSCL 1176 >gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4] gi|226186135|dbj|BAH34239.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4] Length=1202 Score = 1856 bits (4807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 891/1174 (76%), Positives = 1016/1174 (87%), Gaps = 1/1174 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ M E RL M AVGMTDHGNM+GAS+FYN A AGIKP Sbjct 28 SFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGIKP 87 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAP SRF+T+R+LWGD SQK+DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 88 IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 147 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW RMD ELIA HAEGII TTGCPSGE+QTRLRLG DREALEAAAKW+EI GP Sbjct 148 SIEGQLGKWPRMDEELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWGP 207 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 DN+FLELMDHGL+IERRVR+GLL+IG+ L IPPLATNDCHYVT+DAA NHEALLC+QTGK Sbjct 208 DNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQTGK 267 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSAAEMR IWD+EVPGACD+T+ I ERVQSY DVW DRMP+ Sbjct 268 TLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDRMPI 327 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVP+GH Q ++LR EV GL RRFP+GPP Y RA YEI VI GFP+YFL+V DLI Sbjct 328 FPVPEGHTQQTFLRAEVMRGLDRRFPSGPPQEYLARADYEIGVINEMGFPAYFLVVGDLI 387 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++A+ GIRVGPGRGSAAGSLVAYA+GIT+IDPIP+GLLFERFLNPER SMPDIDIDFDD Sbjct 388 NHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSMPDIDIDFDD 447 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEMVRYA DKWG+D+VAQVITFGTIKTKAA+KDSAR+ +G+PGFAIAD+ITKALPP Sbjct 448 RRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIADQITKALPPP 507 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDI +SGITDP HERYKEA EVR LI++ PDV IY+TA GLEGLIRNAGVHACAVI Sbjct 508 IMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRNAGVHACAVI 567 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGD ++N++ANR Sbjct 568 MSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDTLENIKANR 627 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GIDLDL+++P+DD ATYELL RGDTLGVFQLDGG MR+LL+ MQPTGF D+VA +ALYRP Sbjct 628 GIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDIVAALALYRP 687 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMG++AH YA RKN + +KPIHPELEEPL EIL+ETYGLI+YQEQIM++AQKVA Y+ Sbjct 688 GPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQLAQKVAGYT 747 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +AD+LR+AMGKKK LEK + GF GM N FS AAIKALWDT+LPFA YAFNKSH+ Sbjct 748 LGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFAGYAFNKSHS 807 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VSYWTAYLKANYPAEYMAGLLTSVGDDKDK+A+YLADCRKLGITVLPPDVNES + Sbjct 808 AGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVLPPDVNESRV 867 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FA+VG DIR+G+G+VRNVGANVV S+++ R +K KFTDFSDYL KID ACNKKVTESL Sbjct 868 DFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMACNKKVTESL 927 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAGAFDSLGH RKGL LVH+DA+DSV+ TKKAEA+GQFDLFG + + VF +K+ Sbjct 928 IKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGA-EADESITSVFDVKI 986 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 P++EW+ KH+LALEREMLGLYVSGHPLNGV H+L Q DT+I AIL+G V + AQV +GG Sbjct 987 PEEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQDGAQVTLGG 1046 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 I+ASV+RRVNKNG+ W QLEDL GGIEV+FFP Y+ YG DI +DA+VLV A+V++RD Sbjct 1047 IIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFPQAYAVYGMDIAEDAIVLVKARVSIRD 1106 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 DR++LI NDL VPD S V RPL+VSLP RQCT DK+SALKQVL RHPGTS VH+RLI Sbjct 1107 DRMSLIGNDLAVPDISAIGVARPLSVSLPLRQCTKDKLSALKQVLTRHPGTSDVHVRLIG 1166 Query 1149 GDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 G I+ +D LRV PS ALMGDLK LLGP CL Sbjct 1167 GTEISLWKVDDVLRVEPSSALMGDLKALLGPSCL 1200 >gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296028453|gb|ADG79223.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM 20162] Length=1183 Score = 1850 bits (4792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 890/1180 (76%), Positives = 1023/1180 (87%), Gaps = 3/1180 (0%) Query 6 AGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAG 65 A SFVHLHNHTEYSMLDGAAK+ P+ AE +RLGM AVGM+DHGNMFGAS+FYN+A K Sbjct 3 AQDSFVHLHNHTEYSMLDGAAKVDPLFAEAKRLGMTAVGMSDHGNMFGASDFYNTAVKYD 62 Query 66 IKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLS 125 IKPIIG+EAYIAP SRF+T+R+ WGDPSQK+DDVSGSG+YTH+TM+AENATGLRNLFKLS Sbjct 63 IKPIIGIEAYIAPESRFNTKRVRWGDPSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS 122 Query 126 SHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREI 185 S AS EGQL KWSRMDAE+IAEHAEGII TTGCPSGEVQTRLRLG ++EALEAAAKW+EI Sbjct 123 SLASIEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHEQEALEAAAKWQEI 182 Query 186 VGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQ 245 G +N++LELMDHG+ IERRVR+GLLEIGR L I PLATNDCHYVT+D A +H ALLC+Q Sbjct 183 FGKENFYLELMDHGIDIERRVREGLLEIGRKLGIKPLATNDCHYVTKDKAESHGALLCIQ 242 Query 246 TGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDR 305 TGKTLSDP RF+FDGDGYYLKSA EMR++WD +VPGACDST+ I ERVQSY +VW +DR Sbjct 243 TGKTLSDPTRFQFDGDGYYLKSAQEMRELWDAQVPGACDSTVEIGERVQSYKEVWEHKDR 302 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVA 365 MP FPVP+ H Q S+L EV GL RRFP GPP Y ERA YE+ VI GFP+YFL+V Sbjct 303 MPRFPVPENHTQESFLESEVMDGLNRRFPDGPPPDYVERARYELSVINEMGFPAYFLVVG 362 Query 366 DLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDID 425 DLI++A GIRVGPGRGSAAGSLVA+ALGIT+IDPIPHGLLFERFLNPER SMPDIDID Sbjct 363 DLIAHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDIDID 422 Query 426 FDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKAL 485 FDDRRRGEM+ YA++KWG D+VAQVITFGTIKTKAA+KDSAR+ YGQPG++IADRITKAL Sbjct 423 FDDRRRGEMITYASEKWGSDKVAQVITFGTIKTKAAIKDSARVIYGQPGYSIADRITKAL 482 Query 486 PPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHAC 545 PP IMAKDI + GITDP+HERYKEA EVR LIETDPDV+ IY A GLEGLIRNAGVHAC Sbjct 483 PPPIMAKDISVKGITDPAHERYKEAVEVRQLIETDPDVKKIYDMALGLEGLIRNAGVHAC 542 Query 546 AVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVR 605 AVIMS +PLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDA+ N++ Sbjct 543 AVIMSCDPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALANIK 602 Query 606 ANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIAL 665 NRGIDLD++ +PLDD+ TY+LL RG+TLGVFQLDGGPMRDLLRRMQPT FED+VAV AL Sbjct 603 HNRGIDLDMDQLPLDDETTYQLLQRGNTLGVFQLDGGPMRDLLRRMQPTKFEDIVAVGAL 662 Query 666 YRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVA 725 YRPGPMG+NAHNDYADRKN RQ +KPIHPELEEPL EIL+ET+GLIVYQEQIM+IAQKVA Sbjct 663 YRPGPMGVNAHNDYADRKNGRQQVKPIHPELEEPLAEILSETFGLIVYQEQIMQIAQKVA 722 Query 726 SYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNK 785 YSL +AD+LR+AMGKKK+E+L++ + GF GM NGFS AI ALW+T+LPFA YAFNK Sbjct 723 GYSLGQADLLRRAMGKKKKEILDEAYGGFQQGMLDNGFSQPAITALWETVLPFAGYAFNK 782 Query 786 SHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNE 845 SHAA YG+VSYWTAYLKANYPAEYMA LLTSVGDDKDKAA+YL DCR+LGITVLPPDVNE Sbjct 783 SHAAAYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKAAIYLGDCRRLGITVLPPDVNE 842 Query 846 SGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVT 905 S F SVG+DIR+G+G+VRNVG VV S++ TR +KG FT FSDYL KI+++AC+KKVT Sbjct 843 SFHAFTSVGEDIRFGMGSVRNVGEGVVASIVNTREEKGNFTSFSDYLAKIEVAACSKKVT 902 Query 906 ESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGS-NDDGTGTA--DP 962 ESLIKAG FDSL H RKGLFLVHSDA++SVL TKKAEA+GQFDLFGS D+G GT D Sbjct 903 ESLIKAGGFDSLEHPRKGLFLVHSDAIESVLSTKKAEAVGQFDLFGSMGDEGGGTEPIDD 962 Query 963 VFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDA 1022 VFTIKVPD+EW+ KHKLALEREMLGLYVS HPL+GV H++AAQ DT IPAI++GDV + Sbjct 963 VFTIKVPDEEWDGKHKLALEREMLGLYVSAHPLDGVEHVIAAQTDTPIPAIVEGDVKDGT 1022 Query 1023 QVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNA 1082 QV VGGIL SVNRRVNKNG P+ASAQ+EDL+GGIEV FFP Y++YGA++V+DAVVL+ A Sbjct 1023 QVTVGGILQSVNRRVNKNGAPFASAQIEDLSGGIEVFFFPQAYAAYGAEVVEDAVVLIKA 1082 Query 1083 KVAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQV 1142 +V RDD++ LIAND+ D S V +PL++++PTR CT DKVSALKQVL RHPG S V Sbjct 1083 RVNFRDDKVTLIANDIAPIDLSQIGVAKPLSLTMPTRICTHDKVSALKQVLQRHPGVSDV 1142 Query 1143 HLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 H++L+SGD+ TTL LD +LRV S +LMGDLK LLGP CL Sbjct 1143 HVKLVSGDKATTLRLDDTLRVNQSSSLMGDLKALLGPNCL 1182 >gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247] gi|262086233|gb|ACY22201.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247] Length=1180 Score = 1836 bits (4756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 892/1177 (76%), Positives = 1014/1177 (87%), Gaps = 2/1177 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK+ P+ AE +RLGM A+GMTDHGNMFGASEFYN+A K IKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVAPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAVKNDIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF+T+R+ WG QK DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYVAPASRFETKRVTWGTRDQKDDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW+RMDA++IAE+AEGII TTGCPSGEVQTRLRLG +REALEAAAKW+EI G Sbjct 124 SIEGQLGKWARMDADIIAEYAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEIFGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N++LELM+HGL IERRVRDGLLE+GR L I PL TNDCHYVT+D A +HEALLCVQTGK Sbjct 184 ENFYLELMEHGLEIERRVRDGLLEVGRKLGIKPLVTNDCHYVTKDHAKSHEALLCVQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSAAEMR++WD VPGACD+TL I ERVQSYADV+T RDRMPV Sbjct 244 TLSDPTRFKFDGDGYYLKSAAEMRELWDSVVPGACDNTLEIGERVQSYADVFTHRDRMPV 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGP--PDGYRERAAYEIDVICSKGFPSYFLIVAD 366 FPVP+G Q +WLR EV GL R AG P Y+ERA YE+DVI GFP+YFL+V D Sbjct 304 FPVPEGESQQTWLRKEVAKGLAERRFAGAEVPREYQERANYELDVIIQMGFPAYFLVVGD 363 Query 367 LISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDF 426 LI +A+ GIRVGPGRGSAAGSLVA+ALGIT+IDPIPHGLLFERFLNPER SMPDIDIDF Sbjct 364 LIRHAQEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDIDIDF 423 Query 427 DDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALP 486 DDRRRGEMVRYA D+WG D+VAQVITFGTIKTKAA+KDSAR+ +GQPGF+IADRITKALP Sbjct 424 DDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFSIADRITKALP 483 Query 487 PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACA 546 P IMAKDIP+ GITDP HER+ EAAEVR LIETDPDV+ IY TA GLEGLIRNAGVHACA Sbjct 484 PPIMAKDIPVWGITDPDHERFNEAAEVRSLIETDPDVKKIYDTALGLEGLIRNAGVHACA 543 Query 547 VIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRA 606 VIMSSEPLT+AIP+W+R QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDAI+N++ Sbjct 544 VIMSSEPLTDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIKI 603 Query 607 NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALY 666 NRG DLDL+ PLDD TYELL RGDTLGVFQLDGG MR+LL+RMQPTGFED+VAV+ALY Sbjct 604 NRGFDLDLDDAPLDDPKTYELLARGDTLGVFQLDGGAMRELLKRMQPTGFEDIVAVLALY 663 Query 667 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVAS 726 RPGPMGMNAHNDYADRKN RQ +KPIHPEL EPL+EILA+TYGLIVYQEQIM+IAQKVA Sbjct 664 RPGPMGMNAHNDYADRKNGRQEVKPIHPELAEPLKEILADTYGLIVYQEQIMQIAQKVAG 723 Query 727 YSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKS 786 YSL RADILR+AMGKKK EVL EFEGF GM+ANGFS AIKALWDTILPFA YAFNKS Sbjct 724 YSLGRADILRRAMGKKKAEVLAAEFEGFEAGMKANGFSGPAIKALWDTILPFAGYAFNKS 783 Query 787 HAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES 846 HAAGYG+VS+WTAYLKANYPAEYMAGLLTSVGDDKDKAA+YLADCRKLGITVLPPDVNES Sbjct 784 HAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDVNES 843 Query 847 GLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTE 906 NFA+VG DIR+GL A+RNVG+ VV S+L R +KGKFT FSDYL KID++ACNKKVTE Sbjct 844 QRNFAAVGTDIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFSDYLGKIDVTACNKKVTE 903 Query 907 SLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTI 966 SLIKAGAFDSL H RKGLFLVH +AV+SVLGTKKAEA+GQFDLFG T VF + Sbjct 904 SLIKAGAFDSLAHPRKGLFLVHGEAVESVLGTKKAEAIGQFDLFGDAGGADDTMAEVFAV 963 Query 967 KVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRV 1026 KVPD+EW+ KHKLA+EREMLGLYVSGHPL+GV H +AA DT+I +L+G++ + AQ+ + Sbjct 964 KVPDEEWDTKHKLAIEREMLGLYVSGHPLSGVEHAIAAHTDTSITTLLEGNIADGAQITI 1023 Query 1027 GGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAV 1086 GGI++SV RRVNK G PWA+ LED+ GG+EV FFP +++YG DIV D +VL+ A+V + Sbjct 1024 GGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAFAAYGMDIVADNIVLIKARVNL 1083 Query 1087 RDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRL 1146 RDD + + ANDL VPD S+A +P+A++L R CT D+V ALKQVL RHPG++ VH+ L Sbjct 1084 RDDSMMISANDLAVPDLSSAGATKPVALTLSARLCTPDRVQALKQVLTRHPGSADVHVTL 1143 Query 1147 ISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 +S +R T L L +SLRVTPS ALMGDLK LLGP CLG Sbjct 1144 VSDERQTQLRLTESLRVTPSSALMGDLKALLGPSCLG 1180 >gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL B-59395] gi|326198697|gb|EGD55880.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL B-59395] Length=1178 Score = 1832 bits (4745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 874/1174 (75%), Positives = 1008/1174 (86%), Gaps = 0/1174 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK++P+ +E ERLGM A+GMTDHGNMFGASEFYN+A K GIKP Sbjct 4 SFVHLHNHTEYSMLDGAAKMSPLFSEAERLGMTAIGMTDHGNMFGASEFYNTAKKHGIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAP SRF+T+R+LWG QK+DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYIAPESRFNTKRVLWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW+RMDAE+IAEHAEGII TTGCPSGEVQTRLRLG D EALEAA KW+EI G Sbjct 124 SIEGQLGKWARMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHDAEALEAAGKWQEIFGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N++LELM+HGL IE+RVR GLL++GR L I PL TNDCHYVTR A +HEALLC+QTGK Sbjct 184 ENFYLELMEHGLEIEQRVRSGLLDVGRKLGIKPLVTNDCHYVTRGHAESHEALLCLQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSA EMR +WDD VPG CDSTL I ERVQSY +V+T DRMP+ Sbjct 244 TLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYTHHDRMPI 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVPDG Q +WL EV AGL RRF PP Y RA YE+ VI GFP+YFL+V DLI Sbjct 304 FPVPDGFTQETWLAREVMAGLDRRFDGNPPGEYVTRAEYELSVINQMGFPAYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 ++A GIRVGPGRGSAAGSLVAYALGIT+IDPIPHGLLFERFLNPER SMPDIDIDFDD Sbjct 364 AHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEM+ YA+ KWGHD+VAQVITFGTIKTKAA+KDSAR+ +GQPGFAIADRITKALPP Sbjct 424 RRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITKALPPP 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDIP+ GITDP HERY EA EVR LIETDPDV+ IY TA GLEGL+RNAGVHACAVI Sbjct 484 IMAKDIPVWGITDPEHERYAEATEVRTLIETDPDVKRIYDTALGLEGLVRNAGVHACAVI 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MSSEPLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDAI+N++ NR Sbjct 544 MSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIKTNR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GIDLDL+ +PL+D +YELL RGDTLGVFQLDG MRDLLRRM+PTGFED+VAV+ALYRP Sbjct 604 GIDLDLDKLPLEDPKSYELLARGDTLGVFQLDGSAMRDLLRRMEPTGFEDIVAVLALYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMG+NAHNDYADRKN RQ +KPIHPELEEPL+EILAET+GLIVYQEQIM+IAQKVA YS Sbjct 664 GPMGVNAHNDYADRKNGRQEVKPIHPELEEPLKEILAETFGLIVYQEQIMQIAQKVAGYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 L +AD+LR+AMGKKK+E+L++ ++GF++GM+ NGFS AI ALWDT+LPFA YAFNKSHA Sbjct 724 LGQADLLRRAMGKKKKEILDEAYDGFAEGMRGNGFSQEAITALWDTVLPFAGYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 AGYG+VS+WTAYLKANYPAEYMAGLLTSVGDDKDKAA+YLADCRK+GITVLPPDVN S Sbjct 784 AGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGITVLPPDVNASRA 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FA+VG+DIR+GL A+RNVG+ VV S++ R +KG +T+FSDYL KID+ AC+KKVTESL Sbjct 844 DFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGAYTNFSDYLGKIDVQACSKKVTESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTIKV 968 IKAG FDSLGH RKGLFLVHS+A+D+V+ TKKAEA+GQFDLFG D G A VF +KV Sbjct 904 IKAGGFDSLGHDRKGLFLVHSEAIDAVISTKKAEAIGQFDLFGGVGDDGGGASDVFAVKV 963 Query 969 PDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVGG 1028 P+DEWE KHKLALER+MLGLYVSGHPL G+ H +AAQ DT+I ++L+G V + AQ+ +GG Sbjct 964 PEDEWETKHKLALERDMLGLYVSGHPLAGLEHAIAAQTDTSITSLLEGSVADGAQITIGG 1023 Query 1029 ILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRD 1088 I++SV RRVNK G PWA+ QLED+ GG+EV FFP Y +YG D+V D +VLV A+V RD Sbjct 1024 IISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFFPRAYVAYGMDLVADNIVLVKARVNKRD 1083 Query 1089 DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLIS 1148 D + ANDL VPD S +PL+++L R CT D+VSALKQ+L RHPGTS VH+ L+S Sbjct 1084 DSTMISANDLAVPDLSAVGTTKPLSLTLSARVCTPDRVSALKQILVRHPGTSDVHVTLVS 1143 Query 1149 GDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 + T L L ++LRV+PS ALMGDLK LLGPGCL Sbjct 1144 DRKQTQLRLTEALRVSPSSALMGDLKALLGPGCL 1177 >gi|343924232|ref|ZP_08763795.1| DNA polymerase III alpha subunit [Gordonia alkanivorans NBRC 16433] gi|343766037|dbj|GAA10721.1| DNA polymerase III alpha subunit [Gordonia alkanivorans NBRC 16433] Length=1180 Score = 1830 bits (4740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 875/1177 (75%), Positives = 1013/1177 (87%), Gaps = 2/1177 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDGAAK++P+ AE +RLGM A+GMTDHGNMFGASEFYN+A K IKP Sbjct 4 SFVHLHNHTEYSMLDGAAKVSPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAIKNDIKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAYIAPGSRFDT+R+ WG QK+DDVSGSG+YTH+TM+AENATGLRNLFKLSS A Sbjct 64 IIGIEAYIAPGSRFDTKRVQWGSREQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW+RMDA+LIAE+AEGII TTGCPSGEVQTRLRLG DREALEAAAKW+EI G Sbjct 124 SIEGQLGKWARMDADLIAEYAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKWQEIFGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N++LELM+HGL IERRVRDGLL+IGR L I P+ TNDCHYVT++ A HEALLCVQTGK Sbjct 184 ENFYLELMEHGLEIERRVRDGLLDIGRKLGIEPIVTNDCHYVTKEHAAAHEALLCVQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 TLSDP RFKFDGDGYYLKSAAEMR+ WD VPGACD+TL I ERVQSY +V+T RDRMPV Sbjct 244 TLSDPTRFKFDGDGYYLKSAAEMREQWDSVVPGACDNTLEIGERVQSYKEVFTHRDRMPV 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGP--PDGYRERAAYEIDVICSKGFPSYFLIVAD 366 FPVPDG Q ++LR EV GLR R AG P Y +RA YE+DVI GFP+YFL+V D Sbjct 304 FPVPDGETQQTFLRKEVAKGLRERRFAGTEVPQEYLDRANYELDVIIQMGFPAYFLVVGD 363 Query 367 LISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDF 426 LI +A GIRVGPGRGSAAGSLVA+ALGIT+IDPIPHGLLFERFLNPER SMPDIDIDF Sbjct 364 LIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDIDIDF 423 Query 427 DDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALP 486 DDRRRGEMVRYA D+WG+D+VAQVITFGTIKTKAA+KDSAR+ +GQPGFAIADRITKALP Sbjct 424 DDRRRGEMVRYATDRWGNDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITKALP 483 Query 487 PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACA 546 P IMAKDIP+ GIT+P HERY EA EVR LIETDPDV+ IY TA GLEGLIRNAGVHACA Sbjct 484 PPIMAKDIPVWGITNPEHERYGEATEVRTLIETDPDVKKIYDTALGLEGLIRNAGVHACA 543 Query 547 VIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRA 606 VIMSSEPLT+AIP+WKR QDGAIITGWDYP+CEAIGLLKMDFLGLRNLT+IGDA++N++ Sbjct 544 VIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALENIKL 603 Query 607 NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALY 666 NRGIDLDL+++PL+D+ TYELL RGDTLGVFQLDG MR+LL+ MQPTGFED+VAV+ALY Sbjct 604 NRGIDLDLDALPLEDEKTYELLARGDTLGVFQLDGAAMRELLKMMQPTGFEDIVAVLALY 663 Query 667 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVAS 726 RPGPMG+NAH DYA RKN Q I+PIHPELEEPL+EIL+ETYGLIVYQEQIM+IAQKVA Sbjct 664 RPGPMGVNAHTDYAKRKNGLQEIRPIHPELEEPLKEILSETYGLIVYQEQIMQIAQKVAG 723 Query 727 YSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKS 786 YSL +AD+LR+AMGKKK+E+L++ ++GF++GM+ NGFS AAI ALWDT+LPFA YAFNKS Sbjct 724 YSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRNNGFSQAAITALWDTVLPFAGYAFNKS 783 Query 787 HAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES 846 HAAGYG+VS+WTAYLKANYPAEYMAGLLTSVGDDKDKAA+YLADCRKLGITVLPPDVNES Sbjct 784 HAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDVNES 843 Query 847 GLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTE 906 NFA+VG DIR+GL A+RNVG+ VVGS++ R +KGKFT FSDYL KID++ACNKKVTE Sbjct 844 QRNFAAVGADIRFGLAAIRNVGSGVVGSIINAREEKGKFTSFSDYLGKIDVTACNKKVTE 903 Query 907 SLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVFTI 966 SLIKAGAFDSLGH RKGLFLVH++AV+SV+GTKKAEA+GQFDLFG + VF + Sbjct 904 SLIKAGAFDSLGHPRKGLFLVHAEAVESVIGTKKAEAIGQFDLFGDAGGADDSMAEVFAV 963 Query 967 KVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRV 1026 KVP++EW+ KHKLA+EREMLGLYVSGHPL GV H ++A DT+I ++L+G++ + AQ+ + Sbjct 964 KVPEEEWDTKHKLAIEREMLGLYVSGHPLAGVEHAISAHTDTSITSLLEGNISDGAQITI 1023 Query 1027 GGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAV 1086 GGI++SV RRVNK G PWA+ LED+ GG+EV FFP Y +YG DIV D +VL+ A+V + Sbjct 1024 GGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAYVAYGMDIVADNIVLIKARVNL 1083 Query 1087 RDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRL 1146 R+D + + ANDL VPD A +P+A++L R CT D+V ALKQVL RHPG + VH+ L Sbjct 1084 REDSMMISANDLAVPDLETAGATKPVALTLSARLCTPDRVQALKQVLTRHPGMADVHVTL 1143 Query 1147 ISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 +S R T L L +SLRV PS ALMGDLK LLGP CLG Sbjct 1144 VSDKRQTQLKLTESLRVAPSSALMGDLKALLGPSCLG 1180 >gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alpha [Segniliparus rotundus DSM 44985] gi|296180989|gb|ADG97895.1| DNA polymerase III, alpha subunit [Segniliparus rotundus DSM 44985] Length=1179 Score = 1745 bits (4520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 841/1176 (72%), Positives = 980/1176 (84%), Gaps = 1/1176 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYS+LDG A++ M E RL MPAVGMTDHGNM+G++EFY ++ K G+KP Sbjct 4 SFVHLHNHTEYSLLDGHAQVDAMFQEAARLKMPAVGMTDHGNMWGSAEFYKASKKHGVKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF T+R WG+P Q++DDVSGSG+YTH+TM+A++A GLRNL KLSS A Sbjct 64 IIGIEAYLAPSSRFSTKREFWGEPGQRSDDVSGSGAYTHMTMVAKDAQGLRNLMKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 SFEGQL KW RMDAEL+AEH G+I TTGCPSGEVQT+LRLGQ A EAA +++EI G Sbjct 124 SFEGQLGKWPRMDAELLAEHGRGVIATTGCPSGEVQTKLRLGQFEAACEAAGRFQEIFGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N++LELMDHG+ IERRVR+ LL +G L IPPLATNDCHYV ++ A HE LLCVQTGK Sbjct 184 ENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVRQEHARGHEILLCVQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 T+SDP RFKFDGDGYYLK A MR WD EVPGACD+TLLIAE+V SY +VW RDRMPV Sbjct 244 TMSDPGRFKFDGDGYYLKPADMMRAAWDSEVPGACDNTLLIAEQVGSYDEVWEVRDRMPV 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVPDG DQ SWLRHEVD GL+RRFP G D YR RAA+E+DVI KGFPSYFLIV DLI Sbjct 304 FPVPDGEDQNSWLRHEVDRGLQRRFPDGVSDEYRARAAFELDVIKQKGFPSYFLIVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 +YARS GIRVGPGRGSAAGSLV+YALGIT++DPI HGLLFERFLNPER S PDIDIDFDD Sbjct 364 AYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIKHGLLFERFLNPERPSAPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEM+RYA++KWG DRVAQVITFGTIKTKAALKDSAR+ +GQPGFAIADRITKALPPA Sbjct 424 RRRGEMIRYASEKWGADRVAQVITFGTIKTKAALKDSARVLHGQPGFAIADRITKALPPA 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDIPLSGIT+P HERYKEA E+R LI DPDV IY+TA LEGLIRNAGVHACA+I Sbjct 484 IMAKDIPLSGITNPEHERYKEATEIRELIANDPDVAKIYETALSLEGLIRNAGVHACAII 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MS+EPL E IPLWKRPQDGAIITGWDYP+CE IGLLKMDFLGLRNLT+IGDAI+N+R NR Sbjct 544 MSNEPLIETIPLWKRPQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDAIENIRQNR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 G++LDLE+ PLDD AT+ LL RG+TLGVFQLDGGPMRDLLRRM+PTGF D+VAV++LYRP Sbjct 604 GVELDLENAPLDDPATFALLSRGETLGVFQLDGGPMRDLLRRMKPTGFGDIVAVLSLYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMG+NAHNDYADRKN RQ IKPIHPELEEPL+EIL+ETYGLIVYQEQIM IAQKVA YS Sbjct 664 GPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILSETYGLIVYQEQIMFIAQKVAGYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 + +AD LRKAMGKKK EVL+ E+EGFS GM+ NGFS AA+KALWDT+LPFADYAFNKSHA Sbjct 724 MGKADALRKAMGKKKLEVLQAEYEGFSQGMRGNGFSEAAVKALWDTVLPFADYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 A Y +V+YWT YLKANYPAEYMA LLTSVGDDKDKAAVYLADCRK+GITVL PDVN+S + Sbjct 784 ACYALVAYWTGYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMGITVLAPDVNKSRV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FA+VG+DI +GL VRNVG +V S+++TR +G FT FSDYL K DI+ACNKK ESL Sbjct 844 DFAAVGEDILFGLSGVRNVGVGLVESIIRTRESEGAFTSFSDYLAKADITACNKKAVESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGS-NDDGTGTADPVFTIK 967 IKAG FD+LGH RKGL+LVH++AVD+V+ TKKAEA GQ+DLF + G+ F ++ Sbjct 904 IKAGGFDALGHPRKGLYLVHTEAVDAVMSTKKAEAQGQYDLFSDFFESGSPELTATFEVQ 963 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 +PD+EW+ K KLALEREMLGLYVSGHPL G+ LAA D +I +ILDG+V + V+VG Sbjct 964 IPDEEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSILDGEVKDGTNVKVG 1023 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 G+L+ VNRRVNKNG P+ASAQLEDL GGIEV FP Y +YG + V+DAVVL+NA+V R Sbjct 1024 GVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFPQNYVAYGEEFVEDAVVLINARVNFR 1083 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRIALIA+D+ + + + L +S+ C D V+ L+++L R+PG +QV L L Sbjct 1084 DDRIALIASDVRQAELTPQKAANTLRLSVAESWCNPDSVAQLREILERNPGPTQVLLDLH 1143 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 G + + LD++L V PSP L GDLK L+GPGCLG Sbjct 1144 RGGKALSFQLDEALTVMPSPELYGDLKALIGPGCLG 1179 >gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316253062|gb|EFV12476.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length=1180 Score = 1735 bits (4494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 841/1177 (72%), Positives = 978/1177 (84%), Gaps = 1/1177 (0%) Query 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 SFVHLHNHTEYSMLDG A++ M E RLGMPAVGMTDHGNM+GA+EFY +A K G+KP Sbjct 4 SFVHLHNHTEYSMLDGHAQVNAMFEEAARLGMPAVGMTDHGNMWGAAEFYRAAKKYGVKP 63 Query 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 IIG+EAY+AP SRF T+R WG PSQ++DDVSGSG+YTH+TM+A++A GL NL KLSS A Sbjct 64 IIGIEAYLAPSSRFSTKREFWGQPSQRSDDVSGSGAYTHMTMVAKDAQGLHNLMKLSSLA 123 Query 129 SFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGP 188 S EGQL KW RMDAE++AEH GII TTGCPSGEVQT+LRLGQ EA EAA +++EI G Sbjct 124 SIEGQLGKWPRMDAEILAEHGRGIIATTGCPSGEVQTKLRLGQFEEACEAAGRFQEIFGK 183 Query 189 DNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGK 248 +N++LELMDHG+ IERRVR+ LL +G L IPPLATNDCHYV ++ A HE LLCVQTGK Sbjct 184 ENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVKQEHARGHEILLCVQTGK 243 Query 249 TLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPV 308 T+SDP RFKFDGDGYYLKSA MR WD +VPGACD+TL +AE+V SY +VW RDRMPV Sbjct 244 TMSDPGRFKFDGDGYYLKSAELMRAAWDSQVPGACDNTLRVAEQVGSYDEVWEKRDRMPV 303 Query 309 FPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVADLI 368 FPVPDG DQ SWL EVD GL RRFP G + YR RAA+E+DVI KGFPSYFL+V DLI Sbjct 304 FPVPDGEDQNSWLAKEVDRGLERRFPDGVAEEYRARAAFELDVIKQKGFPSYFLVVGDLI 363 Query 369 SYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDFDD 428 +YARS GIRVGPGRGSAAGSLV+YALGIT++DPI HGLLFERFLNPER S PDIDIDFDD Sbjct 364 AYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIEHGLLFERFLNPERPSAPDIDIDFDD 423 Query 429 RRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPA 488 RRRGEM+RYA++KWG DRVAQVITFGTIKTKAA+KDSAR+ +GQPGF+IADRITKALPPA Sbjct 424 RRRGEMIRYASEKWGADRVAQVITFGTIKTKAAIKDSARVLHGQPGFSIADRITKALPPA 483 Query 489 IMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVI 548 IMAKDIPLSGITDP HERYKEAAE+R LI +DPDV IY+TA LEGLIRNAGVHACA+I Sbjct 484 IMAKDIPLSGITDPEHERYKEAAEIRELIASDPDVAKIYETALSLEGLIRNAGVHACAII 543 Query 549 MSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANR 608 MS+EPL + IPLWKR QDGAIITGWDYP+CE IGLLKMDFLGLRNLT+IGDAI+N+R NR Sbjct 544 MSNEPLIDTIPLWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDAIENIRQNR 603 Query 609 GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALYRP 668 GI+LDLE+VPL D AT+ LL RG+TLGVFQLDGGPMRDLLRRM+PTGF D+VAV++LYRP Sbjct 604 GIELDLETVPLTDPATFALLSRGETLGVFQLDGGPMRDLLRRMRPTGFGDIVAVLSLYRP 663 Query 669 GPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVASYS 728 GPMG+NAHNDYADRKN RQ IKPIHPELEEPL+EILAETYGLIVYQEQIM IAQKVASYS Sbjct 664 GPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILAETYGLIVYQEQIMFIAQKVASYS 723 Query 729 LARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKSHA 788 + +AD LRKAMGKKK EVL+ E+EGF+ GM NGFS AAIKALWDT+LPFADYAFNKSHA Sbjct 724 MGKADALRKAMGKKKLEVLQAEYEGFAAGMLGNGFSEAAIKALWDTVLPFADYAFNKSHA 783 Query 789 AGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNESGL 848 A YG+V+YWTAYLKANYPAEYMA LLTSVGDDKDKAAVYLADCRK+GITVL PDVN+S + Sbjct 784 ACYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMGITVLAPDVNKSRV 843 Query 849 NFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESL 908 +FA+VG+DI +GL AVRNVG +V S+++TR +G FT FSDYL K DI+ACNKK ESL Sbjct 844 DFAAVGEDILFGLSAVRNVGVGLVESIIRTREAEGAFTSFSDYLAKADIAACNKKAVESL 903 Query 909 IKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGS-NDDGTGTADPVFTIK 967 IKAG FD+LGH RKGL+LVH++AVD+V+GTKKAEA GQ+DLF + G+ F + Sbjct 904 IKAGGFDALGHPRKGLYLVHAEAVDAVMGTKKAEAQGQYDLFSDFFESGSPELASTFETQ 963 Query 968 VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQVRVG 1027 +PD+EW+ K KLALEREMLGLYVSGHPL G+ LAA D +I +ILDG+V + V+VG Sbjct 964 IPDEEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSILDGEVKDGTSVKVG 1023 Query 1028 GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVR 1087 G+L+ VNRRVNKNG P+ASAQLEDL GGIEV FP Y +YG + V+D VVL+NA+V R Sbjct 1024 GVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFPQNYVAYGEEFVEDTVVLINARVNFR 1083 Query 1088 DDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLI 1147 DDRIALIA+D++ + + L +S+ C D V L+++L R+PG +QV L L Sbjct 1084 DDRIALIASDVSHVELTPQTSAGTLRLSVSESWCNPDSVGQLREILERNPGPTQVLLDLH 1143 Query 1148 SGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLGS 1184 + + LD++L VTPSP L GDLK L+GP CL + Sbjct 1144 RNGKSLSFRLDEALTVTPSPELYGDLKALIGPNCLAN 1180 >gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4] gi|319437803|gb|EFV92791.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4] Length=1181 Score = 1723 bits (4463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 828/1179 (71%), Positives = 976/1179 (83%), Gaps = 4/1179 (0%) Query 7 GSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGI 66 G FVHLHNHTE+SMLDG A+I P+ AE RLGMPAVGMTDHGNM+GAS+FY A K G+ Sbjct 2 GDQFVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTGV 61 Query 67 KPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSS 126 KPIIG+EAY+AP SRF+ +RILWG+ QK+DDV+GSG+YTH+TM+AENATGLRNLF+LSS Sbjct 62 KPIIGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLSS 121 Query 127 HASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIV 186 AS+EGQL KW+RMDAE++AE++EGII T+GCPSGE+QTRLRLG +EA EAA KW+ I Sbjct 122 LASYEGQLGKWARMDAEILAEYSEGIIATSGCPSGEIQTRLRLGHIKEAYEAAEKWQSIF 181 Query 187 GPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQT 246 G DN+FLELMDHG+ IERRVR+ LL++GR L +PPL TNDCHYVTR+ AH HEA+LCVQT Sbjct 182 GKDNFFLELMDHGIDIERRVREDLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQT 241 Query 247 GKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRM 306 GKTL+D NRFKFDGDGYYLKSA EMR WD EVPGACD+TL IAERVQ Y D+WTPRDRM Sbjct 242 GKTLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDRM 301 Query 307 PVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKGFPSYFLIVAD 366 P FPVP+G + +WL EV GL+ RFP G P Y ERA +E++VI KG+P YFL+V D Sbjct 302 PKFPVPEGETEDTWLAKEVHKGLQWRFPDGVPQEYIERANFELEVIKGKGYPGYFLVVGD 361 Query 367 LISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDF 426 LI +ARS GI+VGPGRGSAAG+LVAYAL IT+IDPI HGLLFERFLNPER S PDIDIDF Sbjct 362 LIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDIDIDF 421 Query 427 DDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALP 486 DDRRRGEM+RYA+DKWG D++AQVITFGTIKTKAA+KD+AR+++GQPG+AIADRITKALP Sbjct 422 DDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRITKALP 481 Query 487 PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACA 546 PAIMAKDIPLSGITDP HERY EAAEVR L+ETDPDV+ IY TARGLEG++R AGVHACA Sbjct 482 PAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGMVRQAGVHACA 541 Query 547 VIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRA 606 VIMSSEPL + IP+WKR QDGAIITGWDYP+CE IGLLKMDFLGLRNLT+IGD ++N++ Sbjct 542 VIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLENIKL 601 Query 607 NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIALY 666 NRG ++DL+++ DD+ATY+LL RGDTLGVFQLD G MR+LL+RM+PTGF D+VA +ALY Sbjct 602 NRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAALALY 661 Query 667 RPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKVAS 726 RPGPMGM H +YADRKN +Q + PIHPELEEPLREIL ET+GLIVYQEQIM I++++A Sbjct 662 RPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLREILGETHGLIVYQEQIMAISRELAG 721 Query 727 YSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFNKS 786 Y+ AD RKAMGKKK EVL E+E FS GM GFS A+ ALW TI PFA YAFNKS Sbjct 722 YTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIEPFASYAFNKS 781 Query 787 HAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES 846 HAAGYG+VS+WT YLKANYPAEYMA LLTSVGDDKDKAA+YL++CR++GI VLPP VNES Sbjct 782 HAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIKVLPPSVNES 841 Query 847 GLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTE 906 NFASVG+DIR+GLGAVRNVGA VV S++ R KG+FTDFSDYL KID +AC KKVTE Sbjct 842 LTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKIDQTACTKKVTE 901 Query 907 SLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDG---TGTADPV 963 SLIKAGAFDSLGH RKGLFLVH+DAV+SV+ TKKAEA+GQFDLFG DD TG D V Sbjct 902 SLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDTAADTGFGD-V 960 Query 964 FTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQ 1023 F ++VPD+EW+ K KLALEREMLGLYVSGHPL+G+ L A+ DT I I +G++P+ Sbjct 961 FAVRVPDEEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAKTDTNIATIHEGELPHGTA 1020 Query 1024 VRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVLVNAK 1083 V +GGI++ V+RRVNKNG PWA +ED G +EV+FFP TY DI +DAVVLV A+ Sbjct 1021 VTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFPKTYRIAALDIAEDAVVLVKAR 1080 Query 1084 VAVRDDRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQVH 1143 + +R+DR+++ + L VPD PLA++L TR CT + V+ALKQVL RHPG S VH Sbjct 1081 INIREDRVSVFGDTLEVPDLVVGGNGAPLALTLQTRMCTIETVTALKQVLVRHPGPSDVH 1140 Query 1144 LRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCL 1182 LRL++G+ T L LD LRV S +LMGDLK LLG GCL Sbjct 1141 LRLVNGNSSTVLRLDDQLRVETSSSLMGDLKALLGAGCL 1179 >gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314] gi|259164820|gb|EEW49374.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314] Length=1188 Score = 1628 bits (4215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 810/1186 (69%), Positives = 942/1186 (80%), Gaps = 12/1186 (1%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDG AKI + EV R MPAVG+TDHGNM+G++ FY T+AG+K Sbjct 5 SSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTEAGVK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+AP SRF+ R+ WG+P QK+DDVS SG+Y H TM+AENATGLRNLF LSS Sbjct 65 PIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDAE+IAE AEGII TTGCPSG+VQTRLRLGQ EALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDAEIIAERAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYV A HEA+LCVQTG Sbjct 185 RDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT--PRDR 305 KTL D +RFKFDG GYY+K+A +MR +WDD VP CD+TL IAERVQ Y ++W P DR Sbjct 245 KTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWEEHPHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MPV VP+GH SWL HEV AGL RFP P Y ERA YEI VI KG+PSYFLIV Sbjct 305 MPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQVPQEYIERAEYEISVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A++I +ARS GI VGPGRGSAAG+LVAYAL IT+IDPI HGLLFERFLNPER S PDIDI Sbjct 365 AEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK A+KDSAR+ +GQPG+ IADRITK Sbjct 425 DFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPGYQIADRITKV 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPP IMAKDIPLSGITDP HERY EA EVR LIETDPDVR IY TARGLEG++R AGVHA Sbjct 485 LPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIMSS+PL E IP+WKRP DGA ITGWDYPACEAIGLLKMDFLGLRNLT+IGDAI+N+ Sbjct 545 CAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNLTVIGDAIENI 604 Query 605 RANR-GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVI 663 +ANR G +DLE++ ++D+ TY+LL RG+TLG+FQLDGG M++LL+RMQPTGF D+VA + Sbjct 605 KANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQPTGFNDIVAAL 664 Query 664 ALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQK 723 ALYRPGPMG+NAH DYADRKN R+ I PIHPELEEPL EIL ETYGLIVYQEQIM+I+QK Sbjct 665 ALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVYQEQIMKISQK 724 Query 724 VASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAF 783 VA+Y+ +AD RKAMGKKK EVL KEF F GM+ANGFS AIK LWDTILPFA YAF Sbjct 725 VANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWDTILPFAGYAF 784 Query 784 NKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDV 843 NKSHAAGYG+VS+WTAYLKA+Y EYMA LLTSVGD+KDK A+YLADCR LGI VL PD+ Sbjct 785 NKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRHLGIRVLSPDI 844 Query 844 NESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKK 903 NES LNF VG DIRYGLGA+RNVG+ VV S+++TR KG F DFSDYL+KID CNK+ Sbjct 845 NESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLDKIDTLPCNKR 904 Query 904 VTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPV 963 +TESLIKAGAFDSLGH RKGL LV+ DAVDSV+ TKKA GQFDLF S G D V Sbjct 905 ITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF--GAEAEDEV 962 Query 964 ---FTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 F I VPDD+W+ KH+LALEREMLGLYVSGHPL+G LAAQ+DT + I+ G++ + Sbjct 963 GGFFQIAVPDDKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLTTIIAGELRH 1022 Query 1021 DAQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVV 1078 A+V VGGI++ V+RR + K+G PWA +ED G +E++ F YS G+ IV+D ++ Sbjct 1023 GAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVFNKVYSIVGSLIVEDNII 1082 Query 1079 LVNAKVAVRDDRIALIANDLTVPDFSNAEVE-RPLAVSLPTRQCTFDKVSALKQVLARHP 1137 L A V++RDDR++L +DL VP+ PL +++ T QCT +S LKQVL + Sbjct 1083 LAKAHVSIRDDRMSLFCDDLRVPELGPGNGSGLPLRLTMRTDQCTMTNISKLKQVLVGNR 1142 Query 1138 GTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 G S V+L L+ GD T + L LRVT S +LMGDLK +GPG LG Sbjct 1143 GESDVYLNLVDGDSSTVMILGDHLRVTRSASLMGDLKATMGPGILG 1188 >gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [Corynebacterium efficiens YS-314] gi|23493870|dbj|BAC18839.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens YS-314] Length=1204 Score = 1628 bits (4215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 811/1193 (68%), Positives = 945/1193 (80%), Gaps = 12/1193 (1%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 +S + SSFVHLHNHTEYSMLDG AKI + EV R MPAVG+TDHGNM+G++ FY Sbjct 14 LSRMAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRK 73 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 T+AG+KPIIG+EAY+AP SRF+ R+ WG+P QK+DDVS SG+Y H TM+AENATGLRN Sbjct 74 MTEAGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRN 133 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LF LSS AS+EGQL KW RMDAE+IAE AEGII TTGCPSG+VQTRLRLGQ EALEAAA Sbjct 134 LFYLSSMASYEGQLGKWPRMDAEIIAERAEGIIATTGCPSGDVQTRLRLGQFNEALEAAA 193 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 W++I G DNYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYV A HEA Sbjct 194 MWQDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEA 253 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 +LCVQTGKTL D +RFKFDG GYY+K+A +MR +WDD VP CD+TL IAERVQ Y ++W Sbjct 254 MLCVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIW 313 Query 301 T--PRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGF 357 P DRMPV VP+GH SWL HEV AGL RFP P Y ERA YEI VI KG+ Sbjct 314 EEHPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQVPQEYIERAEYEISVIDMKGY 373 Query 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417 PSYFLIVA++I +ARS GI VGPGRGSAAG+LVAYAL IT+IDPI HGLLFERFLNPER Sbjct 374 PSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNPERP 433 Query 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477 S PDIDIDFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK A+KDSAR+ +GQPG+ I Sbjct 434 SAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPGYQI 493 Query 478 ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537 ADRITK LPP IMAKDIPLSGITDP HERY EA EVR LIETDPDVR IY TARGLEG++ Sbjct 494 ADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLEGVV 553 Query 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597 R AGVHACAVIMSS+PL E IP+WKRP DGA ITGWDYPACEAIGLLKMDFLGLRNLT+I Sbjct 554 RQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNLTVI 613 Query 598 GDAIDNVRANR-GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656 GDAI+N++ANR G +DLE++ ++D+ TY+LL RG+TLG+FQLDGG M++LL+RMQPTGF Sbjct 614 GDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQPTGF 673 Query 657 EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQ 716 D+VA +ALYRPGPMG+NAH DYADRKN R+ I PIHPELEEPL EIL ETYGLIVYQEQ Sbjct 674 NDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVYQEQ 733 Query 717 IMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTIL 776 IM+I+QKVA+Y+ +AD RKAMGKKK EVL KEF F GM+ANGFS AIK LWDTIL Sbjct 734 IMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWDTIL 793 Query 777 PFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 836 PFA YAFNKSHAAGYG+VS+WTAYLKA+Y EYMA LLTSVGD+KDK A+YLADCR LGI Sbjct 794 PFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRHLGI 853 Query 837 TVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKID 896 VL PD+NES LNF VG DIRYGLGA+RNVG+ VV S+++TR KG F DFSDYL+KID Sbjct 854 RVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLDKID 913 Query 897 ISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDG 956 CNK++TESLIKAGAFDSLGH RKGL LV+ DAVDSV+ TKKA GQFDLF S G Sbjct 914 TLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF--G 971 Query 957 TGTADPV---FTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAI 1013 D V F I VPDD+W+ KH+LALEREMLGLYVSGHPL+G LAAQ+DT + I Sbjct 972 AEAEDEVGGFFQIAVPDDKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLTTI 1031 Query 1014 LDGDVPNDAQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGAD 1071 + G++ + A+V VGGI++ V+RR + K+G PWA +ED G +E++ F YS G+ Sbjct 1032 IAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVFNKVYSIVGSL 1091 Query 1072 IVDDAVVLVNAKVAVRDDRIALIANDLTVPDFSNAEVE-RPLAVSLPTRQCTFDKVSALK 1130 IV+D ++L A V++RDDR++L +DL VP+ PL +++ T QCT +S LK Sbjct 1092 IVEDNIILAKAHVSIRDDRMSLFCDDLRVPELGPGNGSGLPLRLTMRTDQCTMTNISKLK 1151 Query 1131 QVLARHPGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 QVL + G S V+L L+ GD T + L LRVT S +LMGDLK +GPG LG Sbjct 1152 QVLVGNRGESDVYLNLVDGDSSTVMILGDHLRVTRSASLMGDLKATMGPGILG 1204 >gi|341825183|gb|AEK92704.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis PAT10] Length=1186 Score = 1623 bits (4202), Expect = 0.0, Method: Compositional matrix adjust. Identities = 788/1185 (67%), Positives = 934/1185 (79%), Gaps = 12/1185 (1%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDG AK+ + EV R GMPAVGMTDHGNMFG+ FY + KAG+K Sbjct 5 SSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKKAGVK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+AP SRF+ R+ WG+P QK+DDVS SG+Y H TM+AENA GLRNLF LSS Sbjct 65 PIIGIEAYMAPDSRFNKTRVRWGEPHQKSDDVSASGAYLHQTMLAENAEGLRNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDA+LIAEHA GII TTGCPSG+VQTRLRLGQ +ALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDADLIAEHASGIIATTGCPSGDVQTRLRLGQFDQALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 +NYFLELMDHGL IE RVR LLEIGR L++PPL TNDCHYV A HEA+LCVQTG Sbjct 185 KENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR--DR 305 KTLSDP+RFKFDG GYY+K+A +MR++WD VP ACD+TL IAERVQ Y ++W DR Sbjct 245 KTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAERVQDYGEIWEEHTHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+GH SWLRHEV GLR RF G P Y +RA YEI VI KG+PSYFLIV Sbjct 305 MPIADVPEGHTPTSWLRHEVLEGLRVRFNGGEVPQSYIDRAEYEISVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A+LI +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ H LLFERFLNPER S PDIDI Sbjct 365 AELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DF DRRRGEM+RYAAD+WG D++AQVITFGT+KTK A+KDSAR+ YGQPG+ IADRITK Sbjct 425 DFADRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQYGQPGYQIADRITKE 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGI DP H RY EA EVR LIETDPDV+ IY TARGLEG++R AGVHA Sbjct 485 LPPAIMAKDIPLSGIMDPEHPRYGEAGEVRNLIETDPDVKKIYDTARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIM+S PL E IP+WKR DGA+ITGW YPACEAIGLLKMDFLGLRNLT+IGD I+N+ Sbjct 545 CAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLLKMDFLGLRNLTVIGDCIENI 604 Query 605 RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIA 664 + NR +DLE + DD YELL GDTLGVFQLD G M++LL+RMQPTGF D+VA +A Sbjct 605 KINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGMQELLKRMQPTGFHDIVASLA 664 Query 665 LYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKV 724 LYRPGPMG+NAH DYADRKN R+ I+PIHPEL+EPLREIL ETYGLIVYQEQIMRI+QKV Sbjct 665 LYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREILDETYGLIVYQEQIMRISQKV 724 Query 725 ASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFN 784 A+Y+ AD RKAMGKK+ EVL K+++ F +GM +NG+S A+ ALW TI PFA YAFN Sbjct 725 ANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYSKGAVDALWGTIEPFASYAFN 784 Query 785 KSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN 844 KSHAAGYG+VSYWTAYLKANY AEYMA LLTSV D KDK+A+YL++CR LGI+VL PDVN Sbjct 785 KSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHLGISVLSPDVN 844 Query 845 ESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKV 904 ES LNF VG DIR+GLGAVRNVG +VV S+++ R +KG F+DFSDYL+KID ACNK+V Sbjct 845 ESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGGFSDFSDYLDKIDTVACNKRV 904 Query 905 TESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDL---FGSNDDGTGTAD 961 TESLIKAGAFDSLGH RKGL L+H DAVDSV+ TKKA GQFDL FG +D G A Sbjct 905 TESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADKGQFDLFAGFGGDDASMGNA- 963 Query 962 PVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPND 1021 F +++P+ +W+ KH+LALEREMLGLYVSGHPL+G L AQ DT + IL G++ N Sbjct 964 --FAVQIPEAQWDRKHQLALEREMLGLYVSGHPLDGYEEALDAQTDTQLTTILAGELRNG 1021 Query 1022 AQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVL 1079 A+V++GGI++SV+RR + K+G PWA +ED G ++++ F Y+ G IV+D ++L Sbjct 1022 AEVQIGGIISSVDRRYSKKDGSPWAIVTIEDHHGAQVDLLVFNKIYAIVGPQIVEDNIIL 1081 Query 1080 VNAKVAVRDDRIALIANDLTVPDFSNAE-VERPLAVSLPTRQCTFDKVSALKQVLARHPG 1138 A V++RDDR++L +DL VPD PL +++ T QCT ++ LK VLA + G Sbjct 1082 AKAHVSIRDDRMSLFCDDLKVPDLGPGNGAGLPLRLTMRTEQCTMANIARLKDVLANNKG 1141 Query 1139 TSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 S V+L ++ GD T + L + LRV + +LMGDLK +GPG LG Sbjct 1142 DSDVYLNIVHGDEATVMILGEHLRVNRTASLMGDLKATMGPGILG 1186 >gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium genitalium ATCC 33030] gi|300532568|gb|EFK53629.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium genitalium ATCC 33030] Length=1185 Score = 1607 bits (4161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 797/1182 (68%), Positives = 938/1182 (80%), Gaps = 7/1182 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTE+SMLDG AK+ + EV R GMPAVGMTDHGNMFG++ FY T AGIK Sbjct 5 SSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQGMPAVGMTDHGNMFGSNAFYRRMTDAGIK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+AP SRF+ +R+LWG P QK DDVS SG+Y H TM+AENATGLRNLF+LSS Sbjct 65 PIIGIEAYMAPESRFNKKRVLWGTPDQKGDDVSASGAYLHQTMLAENATGLRNLFRLSSL 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDAELIAEHA+GII TTGCPSG+VQTRLRLGQ +ALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDAELIAEHADGIIATTGCPSGDVQTRLRLGQYDQALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGLTIERRVR+ LL IG AL++PPL TNDCHYV A HEA+LCVQTG Sbjct 185 KDNYFLELMDHGLTIERRVREDLLRIGEALDLPPLVTNDCHYVLESQAPAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT--PRDR 305 KTL DP+RFKFDG GYY+KSA +MR WDD VP CD+TL +AERV Y ++W P DR Sbjct 245 KTLLDPDRFKFDGTGYYIKSAEQMRNDWDDMVPDGCDNTLWVAERVGDYGELWAEHPHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+G +WLR EV GL RF P+ YR RA YEIDVI KG+PSYFLIV Sbjct 305 MPIATVPEGETPTTWLRKEVHRGLDERFEGKEVPEDYRTRADYEIDVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A+LI +ARS GIRVGPGRGSAAGSLVAYAL IT+IDP+ HGLLFERFLNPER S PDIDI Sbjct 365 AELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+ YAA+ WG D++AQVITFGT+KTK A+KDSA++++GQ GF ADRI A Sbjct 425 DFDDRRRGEMLTYAAENWGEDKIAQVITFGTVKTKQAIKDSAKVNFGQEGFQKADRINAA 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGITDP H+RY EA EVR +IETDPDV IY+TARGLEG++R AGVHA Sbjct 485 LPPAIMAKDIPLSGITDPEHDRYSEATEVRSMIETDPDVAKIYETARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIM+S PL + IP+WKRP DGA+ITGWDYPACEAIGLLKMDFLGLRNLT+IGDAI+N+ Sbjct 545 CAVIMASVPLMDHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNLTVIGDAIENI 604 Query 605 RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIA 664 NRG +DLE++ D++A YELL RGDTLGVFQLDGG M++LL+RM+PTGF D+VA +A Sbjct 605 EKNRGETIDLEALDTDNEAVYELLSRGDTLGVFQLDGGGMQELLKRMKPTGFNDIVASLA 664 Query 665 LYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKV 724 LYRPGPMG+NAH DYADRKN R+ I PIHPELEEPL+EIL ETYGLIVYQEQIM I+QKV Sbjct 665 LYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDETYGLIVYQEQIMNISQKV 724 Query 725 ASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFN 784 A+Y+ +AD RKAMGKKK EVL +E+E FS GM NG+S AA+ ALW TI PFA YAFN Sbjct 725 ANYTAGQADGFRKAMGKKKPEVLAQEYEKFSQGMFDNGYSKAAVDALWGTIEPFASYAFN 784 Query 785 KSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN 844 KSHAAGY +VSYWTAYLKANY AEYMA LLTSVGD KDK+A+YLADCR LGI+VLPPD+N Sbjct 785 KSHAAGYALVSYWTAYLKANYAAEYMAALLTSVGDKKDKSAIYLADCRHLGISVLPPDIN 844 Query 845 ESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKV 904 ES F +V +DIRYGL A+RNVGA VV S++++R KG FT+FSDYL+KID+ CNK++ Sbjct 845 ESEETFMAVDKDIRYGLAAIRNVGAEVVESIMESRRTKGAFTNFSDYLDKIDLLPCNKRI 904 Query 905 TESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVF 964 TESLIKAGAFDSL H RKGL LV DAVDSVL TKKA GQFDLF S G A F Sbjct 905 TESLIKAGAFDSLDHPRKGLLLVSDDAVDSVLTTKKAADKGQFDLF-SAFGGDQEATNAF 963 Query 965 TIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQV 1024 +I+VPDDEWE KHKLALEREMLGLYVSGHPL+G + AQ DT +P IL+G++ + +V Sbjct 964 SIEVPDDEWEKKHKLALEREMLGLYVSGHPLDGFEEAIDAQTDTPLPKILEGEMRHGDEV 1023 Query 1025 RVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVLVNA 1082 +GGI++ V+RR + K+G PWA LED G +EV+ F Y+ IV+D ++LV A Sbjct 1024 TIGGIISGVDRRYSKKDGSPWAIVTLEDHHGAQVEVLLFNKVYALVAPQIVEDNIILVKA 1083 Query 1083 KVAVRDDRIALIANDLTVPDFSNAE-VERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQ 1141 V++RDDR++L +D+ VP+ PL ++L T QCT D + LKQVL+ +PG S Sbjct 1084 HVSIRDDRMSLFGDDVKVPELGPGNGAGLPLRLTLKTEQCTMDNIRKLKQVLSNNPGDSD 1143 Query 1142 VHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 V+L L++GD+ + L LRV S +LMGDLK +G G LG Sbjct 1144 VYLNLVNGDQSQLMILGDHLRVERSGSLMGDLKAAMGAGVLG 1185 >gi|336325369|ref|YP_004605335.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM 45100] gi|336101351|gb|AEI09171.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM 45100] Length=1189 Score = 1602 bits (4147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 794/1180 (68%), Positives = 931/1180 (79%), Gaps = 12/1180 (1%) Query 6 AGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAG 65 +GSSFVHLHNHTEYSMLDG AK+ + AE +R GMPAVGMTDHGNMFGA FY + T A Sbjct 2 SGSSFVHLHNHTEYSMLDGMAKVDMLAAEAKRQGMPAVGMTDHGNMFGADAFYRAMTAAD 61 Query 66 IKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLS 125 IKPIIG+EAYIAP SRF+ R+ WG+P QK+DDVS SG+Y H TM+AENATGLRNLF LS Sbjct 62 IKPIIGIEAYIAPESRFNQNRVRWGNPEQKSDDVSASGAYLHQTMIAENATGLRNLFYLS 121 Query 126 SHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREI 185 S AS+EGQL KW RMDAELIAEHAEGII TTGCPSG+VQTRLRLGQ EALEAAAKW++I Sbjct 122 SLASYEGQLGKWPRMDAELIAEHAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAKWQDI 181 Query 186 VGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQ 245 G DN+FLELMDHGL IERRVR+ LLEIGR L++PPL TNDCHYV A HE +LCVQ Sbjct 182 YGKDNFFLELMDHGLEIERRVREDLLEIGRRLDLPPLVTNDCHYVLESQAAAHEVMLCVQ 241 Query 246 TGKTLSDPN------RFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADV 299 TG TL +P RF F G GYYL++A ++R WD EVP CD+TL +AERVQ Y++V Sbjct 242 TGSTLDEPTLDEGGKRFAFSGTGYYLRTAEDLRAQWDKEVPKGCDNTLWVAERVQDYSEV 301 Query 300 WT--PRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKG 356 W P DRMP+ VP+G +WL HEV GL RFP P P Y +RA YEI+VI KG Sbjct 302 WEEHPFDRMPIADVPEGETPTTWLTHEVMKGLEDRFPGKPVPTEYIDRAKYEIEVIDMKG 361 Query 357 FPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPER 416 +PSYFLIVA+LI YARS GIRVGPGRGSAAGSLVAYAL IT+IDP+ HGLLFERFLNPER Sbjct 362 YPSYFLIVAELIKYARSVGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLNPER 421 Query 417 TSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 476 S PDIDIDFDDRRRGEM+RYA+D+WG D++AQVITFGT+KTK A+KDSAR HYGQ GF Sbjct 422 PSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARAHYGQAGFQ 481 Query 477 IADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 536 +ADRITKALPPAIMAKDIPLSGI DP HERY EAAEVR LIETDPDV IYQ ARGLEG+ Sbjct 482 MADRITKALPPAIMAKDIPLSGIMDPEHERYNEAAEVRNLIETDPDVNKIYQDARGLEGV 541 Query 537 IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTI 596 +R AGVHACAVIMSS PL + IP+WKR QDGA+ITGW YPACEAIGLLKMDFLGLRNLT+ Sbjct 542 VRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDFLGLRNLTV 601 Query 597 IGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656 IGDA++N++ANR DLDLE++ +D+ TYELL RG+TLGVFQLD G M++LL+RM+PTGF Sbjct 602 IGDALENIKANRDFDLDLENLSTEDEPTYELLARGETLGVFQLDSGGMQELLKRMKPTGF 661 Query 657 EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQ 716 D+VA +ALYRPGPMG+ AH +YADRKN R+ I PIHPELEEPL+EIL ETYGLIVYQEQ Sbjct 662 NDIVAALALYRPGPMGVGAHWEYADRKNGRKPIVPIHPELEEPLQEILEETYGLIVYQEQ 721 Query 717 IMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTIL 776 IM+I+QKVA+Y+ +AD RKAMGKKK EVLEKEF F GM+ NGFS AAIK LWDTIL Sbjct 722 IMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVNFESGMKDNGFSDAAIKTLWDTIL 781 Query 777 PFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 836 PFA YAFNKSHAAGYG+VS+WTAYLKANY EYMA LLTSV D KDK+A+YLADCR LGI Sbjct 782 PFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYLADCRHLGI 841 Query 837 TVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKID 896 VL PDVNES F SVG+DIR+GLGAVRNVG VV S++++R +KG F DFSDYL+KI+ Sbjct 842 RVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEEVVESIIRSREEKGAFKDFSDYLDKIE 901 Query 897 ISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDG 956 I+A +K+VTESLIKAGAFDSLGH RKGL LVH DAVD+V TKKA A GQFDLF D Sbjct 902 IAAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVTSTKKAAAKGQFDLFAGFGDD 961 Query 957 TGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDG 1016 D VF + VPD W+ KH+LA+ER+MLGLYVSGHPL+G L AQVDT + +L G Sbjct 962 EAVGD-VFRVDVPDQNWDRKHELAMERDMLGLYVSGHPLDGFEDALDAQVDTPLTTVLSG 1020 Query 1017 DVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDD 1075 ++PN+ +V++GGI++SV RRV++NG PW LED G +E++ F TY IV+D Sbjct 1021 ELPNNREVKIGGIISSVERRVDRNGNPWVICTLEDQHGAQVELLVFAKTYQMVAPQIVED 1080 Query 1076 AVVLVNAKVAVRDDRIALIANDLTVPDFS-NAEVERPLAVSLPTRQCTFDKVSALKQVLA 1134 +VL A+++ +DDR++L DL + S A PL + + Q T + ++ LK+VL Sbjct 1081 NIVLAKARISYKDDRMSLFCEDLKSAELSVGAGSGVPLRLCIRVHQATPENMARLKRVLK 1140 Query 1135 RHPGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLK 1174 ++ G S V+L LI G++ L +RV SPALMGDLK Sbjct 1141 QNKGDSDVYLTLIDGEQELQFLLGPEMRVNKSPALMGDLK 1180 >gi|337291101|ref|YP_004630122.1| DNA polymerase III subunit alpha [Corynebacterium ulcerans BR-AD22] gi|334697213|gb|AEG82010.1| DNA polymerase III alpha subunit [Corynebacterium ulcerans 809] gi|334699407|gb|AEG84203.1| DNA polymerase III alpha subunit [Corynebacterium ulcerans BR-AD22] Length=1186 Score = 1600 bits (4143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 789/1185 (67%), Positives = 935/1185 (79%), Gaps = 12/1185 (1%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDG AK+ + EV R GMPAVGMTDHGNMFG+ FY + KAG+K Sbjct 5 SSFVHLHNHTEYSMLDGMAKVDMLADEVVRQGMPAVGMTDHGNMFGSDAFYRTMKKAGVK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+AP SRF+ R+ WG+P QK+DDVS SG+Y H TM+AENA GLRNLF LSS Sbjct 65 PIIGIEAYMAPDSRFNKTRVRWGEPHQKSDDVSASGAYLHQTMLAENAEGLRNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDA+LIAEHA GII TTGCPSG+VQTRLRLGQ +ALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDADLIAEHASGIIATTGCPSGDVQTRLRLGQFDQALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 +NYFLELMDHGL IE RVR LLEIGR L++PPL TNDCHYV A HEA+LCVQTG Sbjct 185 KENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAQAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR--DR 305 KTLSDP+RFKFDG GYY+K+A +MR++WD VP ACD+TL IAERVQ Y ++W DR Sbjct 245 KTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAERVQDYGEIWEEHTHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+GH SWLRHEV GLR RF G P Y +RA YEI VI KG+PSYFLIV Sbjct 305 MPIADVPEGHTPTSWLRHEVLEGLRVRFNGGEVPQSYIDRAEYEISVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A+LI +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ H LLFERFLNPER S PDIDI Sbjct 365 AELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK ALKDSAR+ YGQPG+ IADRITK Sbjct 425 DFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQYGQPGYQIADRITKE 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGI DP H RY EA EVR LIETDPDV+ IY TARGLEG++R AGVHA Sbjct 485 LPPAIMAKDIPLSGIMDPEHPRYGEAGEVRNLIETDPDVKKIYDTARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIM+S PL E IP+WKR DGA+ITGW YPACEAIGLLKMDFLGLRNLT+IGD I+N+ Sbjct 545 CAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLLKMDFLGLRNLTVIGDCIENI 604 Query 605 RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIA 664 + NR +DLE + DD YELL GDTLGVFQLD G M++LL+RMQPTGF D+VA +A Sbjct 605 KINRKETIDLEELATDDPKVYELLSSGDTLGVFQLDSGGMQELLKRMQPTGFHDIVASLA 664 Query 665 LYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKV 724 LYRPGPMG+NAH DYADRKN R+ I+PIHPEL+EPLREIL ETYGLIVYQEQIMRI+QKV Sbjct 665 LYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREILDETYGLIVYQEQIMRISQKV 724 Query 725 ASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFN 784 A+Y+ AD RKAMGKK+ EVL K+++ F +GM +NG+S A+ ALW TI PFA YAFN Sbjct 725 ANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYSKDAVDALWGTIEPFASYAFN 784 Query 785 KSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN 844 KSHAAGYG+VSYWTAYLKANY AEYMA LLTSV D KDK+A+YL++CR LGI+VL PDVN Sbjct 785 KSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHLGISVLSPDVN 844 Query 845 ESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKV 904 ES LNF VG DIR+GLGAVRNVG +VV S+++ R +KG F+DFSDYL+KID ACNK+V Sbjct 845 ESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGNFSDFSDYLDKIDTVACNKRV 904 Query 905 TESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDL---FGSNDDGTGTAD 961 TESLIKAGAFDSLGH RKGL L+H DAVDSV+ TKKA GQFDL FG +DD A Sbjct 905 TESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADKGQFDLFAGFGGDDDSMSNA- 963 Query 962 PVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPND 1021 F +++P+ +W+ KH+LALEREMLGLYVSGHPL+G L AQ DT + IL G++ N Sbjct 964 --FAVQIPEAQWDRKHQLALEREMLGLYVSGHPLDGYEEALEAQTDTPLTTILAGELRNG 1021 Query 1022 AQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVL 1079 A+V++GGI++SV+RR + K+G PWA +ED G ++++ F Y+ G IV+D ++L Sbjct 1022 AEVQIGGIISSVDRRYSKKDGSPWAIVTIEDHHGAQVDLLVFNKIYAIVGPQIVEDNIIL 1081 Query 1080 VNAKVAVRDDRIALIANDLTVPDFSNAE-VERPLAVSLPTRQCTFDKVSALKQVLARHPG 1138 A +++RDDR++L +DL VPD PL +++ T QCT ++ LK VLA + G Sbjct 1082 AKAHISIRDDRMSLFCDDLKVPDLGPGNGAGLPLRLTMRTEQCTMANIARLKDVLANNKG 1141 Query 1139 TSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 S V+L ++ GD T + L + LRV + +LMGDLK +GPG LG Sbjct 1142 DSDVYLNIVHGDEATVMILGEHLRVNRTASLMGDLKATMGPGILG 1186 >gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46] gi|213952098|gb|EEB63483.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46] Length=1185 Score = 1599 bits (4141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 787/1185 (67%), Positives = 939/1185 (80%), Gaps = 8/1185 (0%) Query 6 AGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAG 65 A SSFVHLHNHTEYSMLDG AKI + EV R GMPAVG+TDHGNMFG++ FY G Sbjct 2 ANSSFVHLHNHTEYSMLDGMAKIDLLADEVARQGMPAVGVTDHGNMFGSNAFYRQMKSKG 61 Query 66 IKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLS 125 IKPIIG+EAY+AP SRF+ +RI WG+P Q+ DDVSG GSY H TM+A NA GLRNLF LS Sbjct 62 IKPIIGIEAYMAPESRFNKKRIQWGEPHQRRDDVSGRGSYLHQTMLAANAQGLRNLFYLS 121 Query 126 SHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREI 185 S AS+EGQ+SK+ RMDAEL+AE AEGII TTGCPSG+VQTRLRLGQ EAL+AA W++I Sbjct 122 SMASYEGQISKYPRMDAELVAERAEGIIATTGCPSGDVQTRLRLGQFDEALQAAGMWQDI 181 Query 186 VGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQ 245 G +NYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYVTRD A HEA+LCVQ Sbjct 182 YGKENYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVTRDQAKAHEAMLCVQ 241 Query 246 TGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT--PR 303 TGKTL+DP+RFKFDGDGY++KSA EMR WD VPGACD+TLLIAERV+ Y ++W P Sbjct 242 TGKTLNDPDRFKFDGDGYFIKSAEEMRATWDHLVPGACDNTLLIAERVEDYDELWEEHPH 301 Query 304 DRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFL 362 DRMP VP+G +WL H V GLR+RF P+ Y RA YEI+VI KG+PSYFL Sbjct 302 DRMPKADVPEGETPTTWLHHNVMEGLRKRFEGREVPEEYIRRAEYEIEVIDGKGYPSYFL 361 Query 363 IVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDI 422 IVA+LI +AR GI+VGPGRGSAAGSLVAYA IT+IDPI HGLLFERFLNPER S PDI Sbjct 362 IVAELIRHAREVGIKVGPGRGSAAGSLVAYATWITNIDPIEHGLLFERFLNPERPSAPDI 421 Query 423 DIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRIT 482 DIDFDDRRR EM+RYAAD+WG D+VAQV+TFGT+KTK ALKDSAR+ +GQPG+ IADRIT Sbjct 422 DIDFDDRRRDEMIRYAADRWGEDKVAQVVTFGTVKTKQALKDSARVQFGQPGYQIADRIT 481 Query 483 KALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGV 542 KALPPAIMAKDIPL GI DP H RY EAAEVR LIETDPDV IY+TARGLEG++R GV Sbjct 482 KALPPAIMAKDIPLGGIVDPEHPRYGEAAEVRQLIETDPDVARIYETARGLEGVVRQTGV 541 Query 543 HACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAID 602 HACAV+M+S PL + IP+WKR DGAIITGWDYPACEAIGLLKMDFLGLRNLT+IGD I+ Sbjct 542 HACAVVMASVPLMDHIPMWKRQADGAIITGWDYPACEAIGLLKMDFLGLRNLTVIGDCIE 601 Query 603 NVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAV 662 ++++NRG + L+ + DD YELL RGDTLGVFQLDGG MR+LL+RMQPTGF+D+VA Sbjct 602 HIKSNRGETVLLDDLQTDDPKVYELLSRGDTLGVFQLDGGGMRELLKRMQPTGFDDIVAS 661 Query 663 IALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQ 722 +ALYRPGPMG+NAH DYAD KN R+ IH EL+E L+EIL ET+GLIVYQEQIM+I+Q Sbjct 662 LALYRPGPMGVNAHFDYADIKNGRKPYNAIHAELDEQLKEILEETHGLIVYQEQIMKISQ 721 Query 723 KVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYA 782 K+A+Y+ +AD RKAMGKKK EVL KEF F GM NG+S A++ LWD ILPFA YA Sbjct 722 KLANYTAGQADGFRKAMGKKKPEVLAKEFVNFEGGMLENGYSKDAVQKLWDIILPFASYA 781 Query 783 FNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPD 842 FNKSHAAGYG+VSYWTAYLKANY AEYMA LLTSV DDK+K A+YL+DCR LGI VLPPD Sbjct 782 FNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADDKNKLAIYLSDCRHLGIKVLPPD 841 Query 843 VNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNK 902 VNESG++F VG+DIR+GLGA+RNVG +VV S+++TR +KGKFT FSDYL+KI+ CNK Sbjct 842 VNESGMDFEPVGEDIRFGLGAIRNVGHDVVASIVKTREEKGKFTSFSDYLDKIETLPCNK 901 Query 903 KVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFG--SNDDGTGTA 960 ++TESLIKAGAFDSLGH RKGL L+H +A+DSVL TKKA GQFDLF D+ TG+ Sbjct 902 RITESLIKAGAFDSLGHPRKGLALIHEEAIDSVLSTKKAADKGQFDLFAGFGGDEDTGS- 960 Query 961 DPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPN 1020 + +F I+VPD++W+ KH+L LEREMLGLYVSGHPL+G LAAQ DTA+ ++ G+V N Sbjct 961 ESIFEIRVPDEKWDRKHELTLEREMLGLYVSGHPLDGFEESLAAQTDTALTTVVGGEVAN 1020 Query 1021 DAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVL 1079 + ++ +GGI++SV+RRVNKNG PWA +ED G +EVM F TY+ I +DA+VL Sbjct 1021 NTEITIGGIVSSVDRRVNKNGQPWAIIGIEDHNGARVEVMAFARTYAMIATSIAEDAIVL 1080 Query 1080 VNAKVAVRDDRIALIANDLTVPDFS-NAEVERPLAVSLPTRQCTFDKVSALKQVLARHPG 1138 + A+V RDDR++++ +DL +PD N PL +++ T QCT + ++ LK VL +PG Sbjct 1081 IRARVQYRDDRMSVVCDDLKLPDLGRNGSTSAPLRLTMRTDQCTPEMIAKLKSVLLDNPG 1140 Query 1139 TSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 S V+L+L+ GD TTL L + LRV +L+GDLK +G LG Sbjct 1141 DSDVYLKLVDGDSHTTLVLGEHLRVDRDASLIGDLKATIGASILG 1185 >gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis FRC41] gi|300686250|gb|ADK29172.1| DNA polymerase III alpha subunit [Corynebacterium pseudotuberculosis FRC41] gi|302206501|gb|ADL10843.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis C231] gi|302331056|gb|ADL21250.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis 1002] gi|308276743|gb|ADO26642.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis I19] Length=1186 Score = 1597 bits (4135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 789/1185 (67%), Positives = 935/1185 (79%), Gaps = 12/1185 (1%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDG AK+ + EV R GMPAVGMTDHGNMFG+ FY + KAG+K Sbjct 5 SSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKKAGVK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+AP SRF+ R+ WG+P QK+DDVS SG+Y H TM+AENA GLRNLF LSS Sbjct 65 PIIGIEAYMAPDSRFNKTRVRWGEPHQKSDDVSASGAYLHQTMLAENAEGLRNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDA+LIAEHA GII TTGCPSG+VQTRLRLGQ +ALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDADLIAEHASGIIATTGCPSGDVQTRLRLGQFDQALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 +NYFLELMDHGL IE RVR LLEIGR L++PPL TNDCHYV A HEA+LCVQTG Sbjct 185 KENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR--DR 305 KTLSDP+RFKFDG GYY+K+A +MR++WD VP ACD+TL IAERVQ Y ++W DR Sbjct 245 KTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAERVQDYGEIWEEHTHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+GH SWLRHEV GLR RF G P Y +RA YEI VI KG+PSYFLIV Sbjct 305 MPIADVPEGHTPTSWLRHEVLEGLRVRFNGGEVPQSYIDRAEYEISVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A+LI +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ H LLFERFLNPER S PDIDI Sbjct 365 AELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK A+KDSAR+ YGQPG+ IADRITK Sbjct 425 DFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQYGQPGYQIADRITKE 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGI DP H RY EA EVR LIETDPDV+ IY TARGLEG++R AGVHA Sbjct 485 LPPAIMAKDIPLSGIMDPEHPRYGEAGEVRNLIETDPDVKKIYDTARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIM+S PL E IP+WKR DGA+ITGW YPACEAIGLLKMDFLGLRNLT+IGD I+N+ Sbjct 545 CAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLLKMDFLGLRNLTVIGDCIENI 604 Query 605 RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIA 664 + NR +DLE + DD YELL GDTLGVFQLD G M++LL+RMQPTGF D+VA +A Sbjct 605 KINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGMQELLKRMQPTGFHDIVASLA 664 Query 665 LYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKV 724 LYRPGPMG+NAH DYADRKN R+ I+PIHPEL+EPLREIL ETYGLIVYQEQIMRI+QKV Sbjct 665 LYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREILDETYGLIVYQEQIMRISQKV 724 Query 725 ASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFN 784 A+Y+ AD RKAMGKK+ EVL K+++ F +GM +NG+S A+ ALW TI PFA YAFN Sbjct 725 ANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYSKGAVDALWGTIEPFASYAFN 784 Query 785 KSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN 844 KSHAAGYG+VSYWTAYLKANY AEYMA LLTSV D KDK+A+YL++CR LGI+VL PDVN Sbjct 785 KSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHLGISVLSPDVN 844 Query 845 ESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKV 904 ES LNF VG DIR+GLGAVRNVG +VV S+++ R +KG F+DFSDYL+KID ACNK+V Sbjct 845 ESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGGFSDFSDYLDKIDTVACNKRV 904 Query 905 TESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDL---FGSNDDGTGTAD 961 TESLIKAGAFDSLGH RKGL L+H DAVDSV+ TKKA GQFDL FG +D G A Sbjct 905 TESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADKGQFDLFAGFGGDDASMGNA- 963 Query 962 PVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPND 1021 F +++P+ +W+ KH+LALEREMLGLYVSGHPL+G L AQ DT + IL G++ N Sbjct 964 --FAVQIPEAQWDRKHQLALEREMLGLYVSGHPLDGYEEALDAQTDTQLTTILAGELRNG 1021 Query 1022 AQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVL 1079 A+V++GGI++SV+RR + K+G PWA +ED G ++++ F Y+ G IV+D ++L Sbjct 1022 AEVQIGGIISSVDRRYSKKDGSPWAIVTIEDHHGAQVDLLVFNKIYAIVGPQIVEDNIIL 1081 Query 1080 VNAKVAVRDDRIALIANDLTVPDFSNAE-VERPLAVSLPTRQCTFDKVSALKQVLARHPG 1138 A V++RDDR++L +DL VPD PL +++ T QCT ++ LK VLA + G Sbjct 1082 AKAHVSIRDDRMSLFCDDLKVPDLGPGNGAGLPLRLTMRTEQCTMANIARLKDVLANNKG 1141 Query 1139 TSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 S V+L ++ GD T + L + LRV + +LMGDLK +GPG LG Sbjct 1142 DSDVYLNIVHGDEATVMILGEHLRVNRTASLMGDLKATMGPGILG 1186 >gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM 44291] gi|227078960|gb|EEI16923.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM 44291] Length=1186 Score = 1596 bits (4132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 791/1182 (67%), Positives = 928/1182 (79%), Gaps = 6/1182 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTE+SMLDG AK+ + EV R GMPAVGMTDHGNMFG++ FY +AG+K Sbjct 5 SSFVHLHNHTEFSMLDGMAKVDLLADEVIRQGMPAVGMTDHGNMFGSNAFYRRMVEAGVK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+AP SRF+ +R+LWG P QK DDVS SG+Y H TM+AENATGLRNLFKLS+ Sbjct 65 PIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLRNLFKLSTL 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDAELIAEHA+GII TTGCPSG+VQTRLRLGQ ALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDAELIAEHADGIIATTGCPSGDVQTRLRLGQFDAALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGL IERRVRD LL+IG L +PPL TNDCHYV A HEA+LCVQTG Sbjct 185 KDNYFLELMDHGLHIERRVRDDLLKIGEILELPPLVTNDCHYVLESQAPAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT--PRDR 305 KT+ D +RFKFDG GYY+KSAA+MR+IWD VP CD+TL IAERV Y+++W P DR Sbjct 245 KTMMDQDRFKFDGTGYYIKSAAQMREIWDSTVPDGCDNTLWIAERVGDYSELWEEHPHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MPV VP+G +WLR EV GL RFP P Y +RA YE+DVI KG+PSYFLIV Sbjct 305 MPVADVPEGETPTTWLRKEVMRGLEERFPGSEVPQEYIDRANYEVDVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A++I +AR GIRVGPGRGSAAG+LVAYAL IT+IDPI HGLLFERFLNPER S PDIDI Sbjct 365 AEIIKHAREIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+ YAA++WG D++AQVITFGT+KTK A+KD+A++ +GQPGF +ADRI A Sbjct 425 DFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVWFGQPGFQMADRINSA 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPL GITDP HERY EAAEVR LIETDPDV IY+TARGLEG++R AGVHA Sbjct 485 LPPAIMAKDIPLVGITDPEHERYPEAAEVRTLIETDPDVAKIYETARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIM+S PL E IP+WKRP DGA+ITGWDYPACEAIGLLKMDFLGLRNLT+IGDA+ N+ Sbjct 545 CAVIMASVPLMEHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNLTVIGDAMANI 604 Query 605 RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIA 664 NRG+ +DLE++ +D+ A YELL RGDTLGVFQLD G M+DLL+RM+PTGF D+VA +A Sbjct 605 EKNRGVTIDLETLDIDNAAVYELLSRGDTLGVFQLDSGGMQDLLKRMKPTGFNDIVASLA 664 Query 665 LYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKV 724 LYRPGPMG+ AH YADRKN R+ I PIHPELEEPLREIL ETYGLIVYQEQIMRI+QKV Sbjct 665 LYRPGPMGVKAHEAYADRKNGRKPITPIHPELEEPLREILDETYGLIVYQEQIMRISQKV 724 Query 725 ASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFN 784 A+Y+ AD RKAMGKKK EVL +E+ FS+GM +NGFS A+ ALW TI PFA YAFN Sbjct 725 ANYTAGEADGFRKAMGKKKPEVLAEEYSKFSEGMFSNGFSKDAVDALWGTIEPFASYAFN 784 Query 785 KSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN 844 KSHAAGY +VSYWTAYLKANY AEYMA LLTSVGD KDK+A+YLADCR LGI+VL PD+N Sbjct 785 KSHAAGYALVSYWTAYLKANYTAEYMAALLTSVGDKKDKSAIYLADCRHLGISVLQPDIN 844 Query 845 ESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKV 904 ES NF +VG DIRYGL AVRNVG VV S+ +TR KG FT FSDYL+KI++ ACNK++ Sbjct 845 ESEENFMAVGSDIRYGLAAVRNVGVEVVESIKETRRTKGAFTSFSDYLDKIELLACNKRI 904 Query 905 TESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVF 964 TESLIKAGAFDSLGH RKGL LV DAVDSVL TKKA GQFDLF S G VF Sbjct 905 TESLIKAGAFDSLGHPRKGLMLVQEDAVDSVLTTKKAADKGQFDLFASFAGEDGAEQAVF 964 Query 965 TIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQV 1024 TI VPDDEW+ KH LALEREMLGLYVSGHPL+G + AQ +TA+ IL G++ + A+V Sbjct 965 TIDVPDDEWDRKHTLALEREMLGLYVSGHPLDGYEEAIDAQTNTALTDILSGEMRDGAEV 1024 Query 1025 RVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVLVNA 1082 +GG+++SV+RR + K+G PWA +ED G +EV+ F YS IV+D ++LV A Sbjct 1025 TIGGLISSVDRRFSKKDGSPWAIVTIEDHHGAQVEVLMFNKVYSLVAPQIVEDNIILVKA 1084 Query 1083 KVAVRDDRIALIANDLTVPDFSNAE-VERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQ 1141 V++RD+R++L +D+ VP+ PL +++ T QCT D + LK VL+ +PG S Sbjct 1085 HVSIRDERMSLFGDDVKVPELGPGNGAGLPLRLTMRTEQCTIDSIRKLKHVLSNNPGDSD 1144 Query 1142 VHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 V+L L+ GD + L LRV S LM DLK LG G +G Sbjct 1145 VYLNLVHGDHSQLMVLGDHLRVERSARLMSDLKANLGAGIVG 1186 >gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [Corynebacterium diphtheriae NCTC 13129] gi|38200417|emb|CAE50105.1| DNA polymerase III alpha subunit [Corynebacterium diphtheriae] Length=1186 Score = 1595 bits (4131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 783/1182 (67%), Positives = 930/1182 (79%), Gaps = 6/1182 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTEYSMLDG AK+ + EV R GMPAVGMTDHGNMFG+ FY + AG+K Sbjct 5 SSFVHLHNHTEYSMLDGMAKVDMLAEEVVRQGMPAVGMTDHGNMFGSDAFYRAMKAAGVK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+EAY+APGSR R+ WG+P QK+DDVS SG+Y H TM+AEN GL NLF LSS Sbjct 65 PIIGIEAYMAPGSRLHKERVRWGEPHQKSDDVSASGAYLHQTMLAENVEGLHNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDAELIAEHA GII TTGCPSG+VQTRLRLGQ +ALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDAELIAEHATGIIATTGCPSGDVQTRLRLGQFDQALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 +NYFLELMDHGL IE RVR LLEIGR L++PPL TNDCHYV A HEA+LCVQTG Sbjct 185 KENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR--DR 305 KTLSDP+RFKFDG GYY+K+A +MR+ WD VP ACD+TL IAERVQ Y ++W P DR Sbjct 245 KTLSDPDRFKFDGSGYYIKTAEQMRETWDSLVPQACDNTLWIAERVQDYGEIWEPHPHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+GH SWLRHEV GLR RF G P Y ERA +EIDVI KG+PSYFLIV Sbjct 305 MPIADVPEGHTPTSWLRHEVHEGLRMRFNGGAVPQNYLERAEFEIDVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A+LI +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ HGLLFERFLNPER S PDIDI Sbjct 365 AELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+RYAA +WG D++AQVITFGT+KTK ALKDSAR+ YGQ G+ +ADRITK Sbjct 425 DFDDRRRGEMIRYAAQRWGEDKIAQVITFGTVKTKQALKDSARVQYGQEGYKMADRITKE 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGI DP H RY EA EVR LIETDPDVR IY TARGLEG++R AGVHA Sbjct 485 LPPAIMAKDIPLSGIMDPEHPRYGEAGEVRHLIETDPDVRKIYDTARGLEGVVRQAGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIM+S PL E IP+WKR DGA+ITGW YPACEAIGLLKMDFLGLRNLT+IGD ++N+ Sbjct 545 CAVIMASVPLLEHIPMWKRANDGALITGWPYPACEAIGLLKMDFLGLRNLTVIGDCLENI 604 Query 605 RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVIA 664 + NR +LDLE++ DD Y+LL GDTLGVFQLD G M++LL+RMQPTGF D+VA +A Sbjct 605 KINRNEELDLEALQTDDPNVYKLLSSGDTLGVFQLDSGGMQELLKRMQPTGFNDIVASLA 664 Query 665 LYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQKV 724 LYRPGPMG+NAH DYADRKN R+ I+PIHPELEEPL+EIL ETYGLIVYQEQIM I++K+ Sbjct 665 LYRPGPMGVNAHWDYADRKNGRKPIEPIHPELEEPLKEILEETYGLIVYQEQIMEISRKL 724 Query 725 ASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAFN 784 A+Y+ AD RKAMGKKK EVL KE++ FS+GM +NG+S AA+ ALW TI PFA YAFN Sbjct 725 ANYTAGEADGFRKAMGKKKPEVLAKEYKKFSEGMFSNGYSKAAVDALWGTIEPFASYAFN 784 Query 785 KSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN 844 KSHAAGYG+VSYWTAYLKANY AEYMA LLTSV D KDK+A+YL++CR L I+VL PDVN Sbjct 785 KSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHLDISVLSPDVN 844 Query 845 ESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKV 904 ES LNF VG+DIR+GLGAVRNVG +VV ++++ R +KG FTDFSDYL+KIDI+ACNK+V Sbjct 845 ESHLNFMPVGEDIRFGLGAVRNVGEDVVAAIIKAREEKGAFTDFSDYLDKIDITACNKRV 904 Query 905 TESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTADPVF 964 TESLIKAGAFDS+ H RKGL L+H DAVD+V TKKA GQFDLF + VF Sbjct 905 TESLIKAGAFDSMDHPRKGLLLIHEDAVDAVTSTKKAADKGQFDLFAGLGADAEEVNNVF 964 Query 965 TIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDAQV 1024 +++PD +W+ KH+LALEREMLGLYVSGHPL+G L AQ DT + IL G++ N A+V Sbjct 965 AVQIPDAQWDKKHQLALEREMLGLYVSGHPLDGYEEALEAQTDTPLTTILSGELRNGAEV 1024 Query 1025 RVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVLVNA 1082 +GGI++ V+RR + K+G PWA +ED G ++++ F Y+ G IV+D ++L A Sbjct 1025 TIGGIISGVDRRYSKKDGSPWAIVTVEDHHGAQVDLLVFNKIYAIVGPQIVEDNIILAKA 1084 Query 1083 KVAVRDDRIALIANDLTVPDFSNAE-VERPLAVSLPTRQCTFDKVSALKQVLARHPGTSQ 1141 V++RDDR++L +DL VP+ PL ++L T QCT + ++ LKQVL+ + G S Sbjct 1085 HVSIRDDRMSLFCDDLKVPELGPGNGAGLPLRLTLRTDQCTMENIAKLKQVLSNNKGDSD 1144 Query 1142 VHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 V+L ++ G+ T + L + LRV S LMGDLK +GPG LG Sbjct 1145 VYLNVVHGEEKTVMILGEHLRVNRSGNLMGDLKATMGPGILG 1186 >gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum R] gi|140846011|dbj|BAF55010.1| hypothetical protein [Corynebacterium glutamicum R] Length=1194 Score = 1593 bits (4126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 805/1191 (68%), Positives = 943/1191 (80%), Gaps = 8/1191 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 +S + SSFVHLHNHTE+SMLDG AKI + EV+ GMPAVG+TDHGNM+G++ FY Sbjct 4 LSHMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRK 63 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 T+ GIKPIIG+E Y+AP SRF R+ WG+P QK+DDVSGSG+Y H TM+AEN TGLRN Sbjct 64 MTEMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRN 123 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LF LSS AS+EGQL KW RMDA++IAE AEGII TTGCPSG+VQTRLRLGQ EALEAAA Sbjct 124 LFYLSSMASYEGQLGKWPRMDADIIAERAEGIIATTGCPSGDVQTRLRLGQFDEALEAAA 183 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 W++I G DNYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYV A HEA Sbjct 184 MWQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEA 243 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 +LCVQTGKTL D +RFKF G GYY+KSA +MR +WDD VP CD+TL IAERVQSY ++W Sbjct 244 MLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIW 303 Query 301 T--PRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGF 357 DRMP+ VP+GH SWL HEV AGL+ RF P+ Y ERA YEI VI KG+ Sbjct 304 EEHSHDRMPIADVPEGHTPTSWLHHEVMAGLKDRFSGQQVPEDYIERAEYEISVIDMKGY 363 Query 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417 PSYFLIVA+LI +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ HGLLFERFLNPER Sbjct 364 PSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNPERP 423 Query 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477 S PDIDIDFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK ALKDSAR+ GQPG+ I Sbjct 424 SAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPGYQI 483 Query 478 ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537 ADR+ K LPPAIMAKDIPLSGITDP H R+ EA VR LIETDPDV+ IY TARGLEG++ Sbjct 484 ADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLEGVV 543 Query 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597 R +GVHACAVIMSS PL + IP+WKRP DGA+ITGWDYPACEAIGLLKMDFLGLRNLT+I Sbjct 544 RQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNLTVI 603 Query 598 GDAIDNVRANR-GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656 GDAI+N++ANR G LDLE++ ++D+ TY+LLGRG+TLGVFQLDGG M++LL+RMQPTGF Sbjct 604 GDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQPTGF 663 Query 657 EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQ 716 D+VA +ALYRPGPMG+NAH DYADRKN R+ I PIHPELEE L EIL ETYGLIVYQEQ Sbjct 664 NDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVYQEQ 723 Query 717 IMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTIL 776 IMRI+QKVA+Y+ +AD RKAMGKKK EVLEKEF F GM+ANG+S AAIK LWDTIL Sbjct 724 IMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWDTIL 783 Query 777 PFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 836 PFA YAFNKSHAAGYG+VS+WTAYLKA+Y EYMA LLTSVGD+KDK+A+YL+DCR LGI Sbjct 784 PFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRHLGI 843 Query 837 TVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKID 896 VL PD+NES LNF VG DIRYGLGA+RNVGA VV S+L TR +KG F DFSDYL+KID Sbjct 844 RVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLDKID 903 Query 897 ISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND-D 955 CNK++TESLIK GAFDSLGHARKGL LV DAVDSV+ TKKA GQFDLF + D D Sbjct 904 TLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAFDSD 963 Query 956 GTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILD 1015 F I VPDDEW+ KH+LALEREMLGLYVSGHPL+G +AAQVDTA+ I+ Sbjct 964 NNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALTTIVA 1023 Query 1016 GDVPNDAQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIV 1073 G++ + A+V VGGI++ V+RR + K+G PWA +ED G +E++ F YS G+ IV Sbjct 1024 GELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVFNKVYSIVGSMIV 1083 Query 1074 DDAVVLVNAKVAVRDDRIALIANDLTVPDFSNAEVE-RPLAVSLPTRQCTFDKVSALKQV 1132 +D ++L A +++RDDR++L +DL VP+ + PL +S+ T QCT ++ LKQV Sbjct 1084 EDNIILAKAHISIRDDRMSLFCDDLRVPELGPGNGQGLPLRLSMRTDQCTMSNIAKLKQV 1143 Query 1133 LARHPGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 L + G S V+L LI GD T + L LRV S +LMGDLK +GPG LG Sbjct 1144 LVDNKGESDVYLNLIDGDNSTVMILGDHLRVNRSASLMGDLKATMGPGILG 1194 >gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|21324900|dbj|BAB99523.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC 13032] Length=1194 Score = 1592 bits (4121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 803/1191 (68%), Positives = 943/1191 (80%), Gaps = 8/1191 (0%) Query 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 +S + SSFVHLHNHTE+SMLDG AKI + EV+ GMPAVG+TDHGNM+G++ FY Sbjct 4 LSHMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRK 63 Query 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 T+ GIKPIIG+E Y+AP SRF R+ WG+P QK+DDVSGSG+Y H TM+AEN TGLRN Sbjct 64 MTEMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRN 123 Query 121 LFKLSSHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAA 180 LF LSS AS+EGQL KW RMDA++IAEHAEGII TTGCPSG+VQTRLRLGQ EALEAAA Sbjct 124 LFYLSSMASYEGQLGKWPRMDADIIAEHAEGIIATTGCPSGDVQTRLRLGQFDEALEAAA 183 Query 181 KWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEA 240 W++I G DNYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYV A HEA Sbjct 184 MWQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEA 243 Query 241 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVW 300 +LCVQTGKTL D +RFKF G GYY+KSA +MR +WDD VP CD+TL IAERVQSY ++W Sbjct 244 MLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIW 303 Query 301 T--PRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGF 357 DRMP+ VP+G+ +WL HEV AGL RF P+ Y ERA YEI VI KG+ Sbjct 304 EEHSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQVPEDYIERAEYEISVIDMKGY 363 Query 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417 PSYFLIVA++I +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ HGLLFERFLNPER Sbjct 364 PSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNPERP 423 Query 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477 S PDIDIDFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK ALKDSAR+ GQPG+ I Sbjct 424 SAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPGYQI 483 Query 478 ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537 ADR+ K LPPAIMAKDIPLSGITDP H R+ EA VR LIETDPDV+ IY TARGLEG++ Sbjct 484 ADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLEGVV 543 Query 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597 R +GVHACAVIMSS PL + IP+WKRP DGA+ITGWDYPACEAIGLLKMDFLGLRNLT+I Sbjct 544 RQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNLTVI 603 Query 598 GDAIDNVRANR-GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656 GDAI+N++ANR G LDLE++ ++D+ TY+LLGRG+TLGVFQLDGG M++LL+RMQPTGF Sbjct 604 GDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQPTGF 663 Query 657 EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQ 716 D+VA +ALYRPGPMG+NAH DYADRKN R+ I PIHPELEE L EIL ETYGLIVYQEQ Sbjct 664 NDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVYQEQ 723 Query 717 IMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTIL 776 IMRI+QKVA+Y+ +AD RKAMGKKK EVLEKEF F GM+ANG+S AAIK LWDTIL Sbjct 724 IMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWDTIL 783 Query 777 PFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 836 PFA YAFNKSHAAGYG+VS+WTAYLKA+Y EYMA LLTSVGD+KDK+A+YL+DCR LGI Sbjct 784 PFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRHLGI 843 Query 837 TVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKID 896 VL PD+NES LNF VG DIRYGLGA+RNVGA VV S+L TR +KG F DFSDYL+KID Sbjct 844 RVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLDKID 903 Query 897 ISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND-D 955 CNK++TESLIK GAFDSLGHARKGL LV DAVDSV+ TKKA GQFDLF + D D Sbjct 904 TLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAFDSD 963 Query 956 GTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILD 1015 F I VPDDEW+ KH+LALEREMLGLYVSGHPL+G +AAQVDTA+ I+ Sbjct 964 NNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALTTIVA 1023 Query 1016 GDVPNDAQVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIV 1073 G++ + A+V VGGI++ V+RR + K+G PWA +ED G +E++ F YS G+ IV Sbjct 1024 GELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVFNKVYSIVGSMIV 1083 Query 1074 DDAVVLVNAKVAVRDDRIALIANDLTVPDFSNAEVE-RPLAVSLPTRQCTFDKVSALKQV 1132 +D ++L A +++RDDR++L +DL VP+ + PL +S+ T QCT ++ LKQV Sbjct 1084 EDNIILAKAHISIRDDRMSLFCDDLRVPELGPGNGQGLPLRLSMRTDQCTMSNIAKLKQV 1143 Query 1133 LARHPGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 L + G S V+L LI GD T + L LRV S +LMGDLK +GPG LG Sbjct 1144 LVDNKGESDVYLNLIDGDNSTVMILGDHLRVNRSASLMGDLKATMGPGILG 1194 >gi|344044799|gb|EGV40474.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum S9114] Length=1188 Score = 1591 bits (4119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 803/1184 (68%), Positives = 939/1184 (80%), Gaps = 8/1184 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTE+SMLDG AKI + EV+ GMPAVG+TDHGNM+G++ FY T+ GIK Sbjct 5 SSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTEMGIK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+E Y+AP SRF R+ WG+P QK+DDVSGSG+Y H TM+AEN TGLRNLF LSS Sbjct 65 PIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDA++IAE AEGII TTGCPSG+VQTRLRLGQ EALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDADIIAERAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYV A HEA+LCVQTG Sbjct 185 RDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT--PRDR 305 KTL D +RFKF G GYY+KSA +MR +WDD VP CD+TL IAERVQSY ++W DR Sbjct 245 KTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWEEHSHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+GH +WL HEV AGL RF P+ Y ERA YEI VI KG+PSYFLIV Sbjct 305 MPIADVPEGHTPTTWLHHEVMAGLEDRFSGQQVPEDYIERAEYEISVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A+LI +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ HGLLFERFLNPER S PDIDI Sbjct 365 AELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK ALKDSAR+ GQPG+ IADR+ K Sbjct 425 DFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPGYQIADRVIKE 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGITDP H R+ EA VR LIETDPDV+ IY TARGLEG++R +GVHA Sbjct 485 LPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLEGVVRQSGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIMSS PL + IP+WKRP DGA+ITGWDYPACEAIGLLKMDFLGLRNLT+IGDAI+N+ Sbjct 545 CAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNLTVIGDAIENI 604 Query 605 RANR-GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVI 663 +ANR G LDLE++ ++D+ TY+LLGRG+TLGVFQLDGG M++LL+RMQPTGF D+VA + Sbjct 605 KANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQPTGFNDIVAAL 664 Query 664 ALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQK 723 ALYRPGPMG+NAH DYADRKN R+ I PIHPELEE L EIL ETYGLIVYQEQIMRI+QK Sbjct 665 ALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVYQEQIMRISQK 724 Query 724 VASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAF 783 VA+Y+ +AD RKAMGKKK EVLEKEF F GM+ANG+S AAIK LWDTILPFA YAF Sbjct 725 VANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWDTILPFAGYAF 784 Query 784 NKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDV 843 NKSHAAGYG+VS+WTAYLKA+Y EYMA LLTSVGD+KDK+A+YL+DCR LGI VL PD+ Sbjct 785 NKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRHLGIRVLSPDI 844 Query 844 NESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKK 903 NES LNF VG DIRYGLGA+RNVGA VV S+L TR +KG F DFSDYL+KID CNK+ Sbjct 845 NESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLDKIDTLPCNKR 904 Query 904 VTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND-DGTGTADP 962 +TESLIK GAFDSLGHARKGL LV DAVDSV+ TKKA GQFDLF + D D Sbjct 905 ITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAFDSDNNDDVAS 964 Query 963 VFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDA 1022 F I VPDDEW+ KH+LALEREMLGLYVSGHPL+G +AAQVDTA+ I+ G++ + A Sbjct 965 FFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALTTIVAGELKHGA 1024 Query 1023 QVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVLV 1080 +V VGGI++ V+RR + K+G PWA +ED G +E++ F YS G+ IV+D ++L Sbjct 1025 EVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVFNKVYSIVGSMIVEDNIILA 1084 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVE-RPLAVSLPTRQCTFDKVSALKQVLARHPGT 1139 A +++RDDR++L +DL VP+ + PL +S+ T QCT ++ LKQVL + G Sbjct 1085 KAHISIRDDRMSLFCDDLRVPELGPGNGQGLPLRLSMRTDQCTMSNIAKLKQVLVDNKGE 1144 Query 1140 SQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 S V+L LI GD T + L LRV S +LMGDLK +GPG LG Sbjct 1145 SDVYLNLIDGDNSTVMILGDHLRVNRSASLMGDLKATMGPGILG 1188 >gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|41326305|emb|CAF20467.1| PUTATIVE DNA POLYMERASE III, ALPHA CHAIN [Corynebacterium glutamicum ATCC 13032] Length=1188 Score = 1590 bits (4117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 802/1184 (68%), Positives = 940/1184 (80%), Gaps = 8/1184 (0%) Query 8 SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67 SSFVHLHNHTE+SMLDG AKI + EV+ GMPAVG+TDHGNM+G++ FY T+ GIK Sbjct 5 SSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTEMGIK 64 Query 68 PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127 PIIG+E Y+AP SRF R+ WG+P QK+DDVSGSG+Y H TM+AEN TGLRNLF LSS Sbjct 65 PIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFYLSSM 124 Query 128 ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 AS+EGQL KW RMDA++IAEHAEGII TTGCPSG+VQTRLRLGQ EALEAAA W++I G Sbjct 125 ASYEGQLGKWPRMDADIIAEHAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMWQDIYG 184 Query 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 DNYFLELMDHGL IE RVR LLEIGR LN+PPL TNDCHYV A HEA+LCVQTG Sbjct 185 RDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAMLCVQTG 244 Query 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT--PRDR 305 KTL D +RFKF G GYY+KSA +MR +WDD VP CD+TL IAERVQSY ++W DR Sbjct 245 KTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWEEHSHDR 304 Query 306 MPVFPVPDGHDQASWLRHEVDAGLRRRFPAGP-PDGYRERAAYEIDVICSKGFPSYFLIV 364 MP+ VP+G+ +WL HEV AGL RF P+ Y ERA YEI VI KG+PSYFLIV Sbjct 305 MPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQVPEDYIERAEYEISVIDMKGYPSYFLIV 364 Query 365 ADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDI 424 A++I +ARS GIRVGPGRGSAAG+LVAYAL IT+IDP+ HGLLFERFLNPER S PDIDI Sbjct 365 AEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNPERPSAPDIDI 424 Query 425 DFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA 484 DFDDRRRGEM+RYAAD+WG D++AQVITFGT+KTK ALKDSAR+ GQPG+ IADR+ K Sbjct 425 DFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPGYQIADRVIKE 484 Query 485 LPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA 544 LPPAIMAKDIPLSGITDP H R+ EA VR LIETDPDV+ IY TARGLEG++R +GVHA Sbjct 485 LPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLEGVVRQSGVHA 544 Query 545 CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNV 604 CAVIMSS PL + IP+WKRP DGA+ITGWDYPACEAIGLLKMDFLGLRNLT+IGDAI+N+ Sbjct 545 CAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNLTVIGDAIENI 604 Query 605 RANR-GIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAVI 663 +ANR G LDLE++ ++D+ TY+LLGRG+TLGVFQLDGG M++LL+RMQPTGF D+VA + Sbjct 605 KANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQPTGFNDIVAAL 664 Query 664 ALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQK 723 ALYRPGPMG+NAH DYADRKN R+ I PIHPELEE L EIL ETYGLIVYQEQIMRI+QK Sbjct 665 ALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVYQEQIMRISQK 724 Query 724 VASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYAF 783 VA+Y+ +AD RKAMGKKK EVLEKEF F GM+ANG+S AAIK LWDTILPFA YAF Sbjct 725 VANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWDTILPFAGYAF 784 Query 784 NKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDV 843 NKSHAAGYG+VS+WTAYLKA+Y EYMA LLTSVGD+KDK+A+YL+DCR LGI VL PD+ Sbjct 785 NKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRHLGIRVLSPDI 844 Query 844 NESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKK 903 NES LNF VG DIRYGLGA+RNVGA VV S+L TR +KG F DFSDYL+KID CNK+ Sbjct 845 NESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLDKIDTLPCNKR 904 Query 904 VTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND-DGTGTADP 962 +TESLIK GAFDSLGHARKGL LV DAVDSV+ TKKA GQFDLF + D D Sbjct 905 ITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAFDSDNNDDVAS 964 Query 963 VFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVPNDA 1022 F I VPDDEW+ KH+LALEREMLGLYVSGHPL+G +AAQVDTA+ I+ G++ + A Sbjct 965 FFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALTTIVAGELKHGA 1024 Query 1023 QVRVGGILASVNRRVN-KNGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAVVLV 1080 +V VGGI++ V+RR + K+G PWA +ED G +E++ F YS G+ IV+D ++L Sbjct 1025 EVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVFNKVYSIVGSMIVEDNIILA 1084 Query 1081 NAKVAVRDDRIALIANDLTVPDFSNAEVE-RPLAVSLPTRQCTFDKVSALKQVLARHPGT 1139 A +++RDDR++L +DL VP+ + PL +S+ T QCT ++ LKQVL + G Sbjct 1085 KAHISIRDDRMSLFCDDLRVPELGPGNGQGLPLRLSMRTDQCTMSNIAKLKQVLVDNKGE 1144 Query 1140 SQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 S V+L LI GD T + L LRV S +LMGDLK +GPG LG Sbjct 1145 SDVYLNLIDGDNSTVMILGDHLRVNRSASLMGDLKATMGPGILG 1188 >gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227543156|ref|ZP_03973205.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] gi|227091445|gb|EEI26757.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227180965|gb|EEI61937.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] Length=1188 Score = 1584 bits (4101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 779/1187 (66%), Positives = 937/1187 (79%), Gaps = 9/1187 (0%) Query 6 AGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAG 65 + SSFVHLHNHTEYSMLDG AK+ + EV+R GMPAVGMTDHGNMFG+ FY T G Sbjct 2 SNSSFVHLHNHTEYSMLDGMAKVDLLAEEVKRQGMPAVGMTDHGNMFGSDAFYRKMTAEG 61 Query 66 IKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLS 125 IKPIIG+E Y+AP SRF+ +R+LWG+P QK DDVS SG+Y H TM+AEN TGL+NLF LS Sbjct 62 IKPIIGIETYMAPDSRFNKKRVLWGEPHQKRDDVSASGAYLHQTMIAENVTGLKNLFHLS 121 Query 126 SHASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREI 185 S AS+EGQL KW RMDAELI+EHAEGII TTGCPSG+VQTRLRLGQ EAL AAA+W++I Sbjct 122 SMASYEGQLGKWPRMDAELISEHAEGIIATTGCPSGDVQTRLRLGQFDEALAAAARWQDI 181 Query 186 VGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQ 245 G DN+FLELMDHGL IERRVRD LLEIG+ LN+PPL TNDCHYV + +H+HEA+LCVQ Sbjct 182 YGKDNFFLELMDHGLDIERRVRDQLLEIGKRLNLPPLVTNDCHYVLQSQSHDHEAMLCVQ 241 Query 246 TGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR-- 303 TGKTL DP+RFKF GDGYY+K+AA+MR WD+ VPGACD+TL IAERV Y+++W P Sbjct 242 TGKTLQDPDRFKFGGDGYYIKTAAQMRDTWDNMVPGACDNTLWIAERVGDYSEIWEPHTH 301 Query 304 DRMPVFPVPDGHDQASWLRHEVDAGLRRRFP-AGPPDGYRERAAYEIDVICSKGFPSYFL 362 DRMP+ VP+G SWL HEV GL+RRFP + P Y +RA YEI+VI KG+PSYFL Sbjct 302 DRMPIADVPEGETPTSWLTHEVMEGLKRRFPDSEVPQEYIDRAKYEIEVIDFKGYPSYFL 361 Query 363 IVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDI 422 IVA+LI +ARS GIRVGPGRGSAAGSLVAYA+ IT+IDP+ HGLLFERFLNPER S PDI Sbjct 362 IVAELIKHARSVGIRVGPGRGSAAGSLVAYAMTITNIDPMEHGLLFERFLNPERPSAPDI 421 Query 423 DIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRIT 482 DIDFDDRRR EM+ YAA++WG D++AQVITFGT+KTK ALKDSAR+ +GQPG+ IADR+T Sbjct 422 DIDFDDRRRSEMITYAAERWGADKIAQVITFGTVKTKQALKDSARVQFGQPGYQIADRVT 481 Query 483 KALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGV 542 K LPPAIM KDI L GI DP+ +RY EA EVR LIETDPDVR I++TARGLEG++R AGV Sbjct 482 KLLPPAIMGKDITLKGIVDPNDKRYNEAGEVRQLIETDPDVRKIFETARGLEGVVRQAGV 541 Query 543 HACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAID 602 HACAVIM+ PL E IP+WKR QDGAIITGW YPACEAIGLLKMDFLGLRNLT++ DA++ Sbjct 542 HACAVIMACVPLMEHIPMWKRAQDGAIITGWPYPACEAIGLLKMDFLGLRNLTVLNDALE 601 Query 603 NVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVAV 662 N++ NRG + LE + D Y+LLGRGDTLGVFQLDGG MR+LLRRM+PTGF+D+VA Sbjct 602 NIKENRGETVVLEDLTYDAPEVYDLLGRGDTLGVFQLDGGGMRELLRRMKPTGFDDIVAA 661 Query 663 IALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIAQ 722 +ALYRPGPMGMNAH DYADRKN ++ I+PIHPEL EPL EIL +TYGLIVYQEQIM+I+Q Sbjct 662 LALYRPGPMGMNAHMDYADRKNGKKPIEPIHPELAEPLEEILHDTYGLIVYQEQIMKISQ 721 Query 723 KVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADYA 782 KVA+YS AD RKAMGKKK EVL+K++ FS GM+ NG+S AI ALW TI PFA YA Sbjct 722 KVANYSAGEADTFRKAMGKKKPEVLKKQYAKFSGGMKDNGYSQDAIDALWGTIEPFASYA 781 Query 783 FNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPD 842 FNKSHAAGY +VSYWTAY+K Y EYMA LLTSVGD+KDK+A+YLADCR LGI VLPPD Sbjct 782 FNKSHAAGYSVVSYWTAYMKTFYTQEYMAALLTSVGDNKDKSAIYLADCRHLGIKVLPPD 841 Query 843 VNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNK 902 VN S NF +VG D+R+GLGAVRNVGA+VV S+++TR +KG FT FSDYL+KI+ CNK Sbjct 842 VNASLQNFQAVGDDVRFGLGAVRNVGADVVDSIVKTRKEKGDFTSFSDYLDKIETLPCNK 901 Query 903 KVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFG--SNDDGTGTA 960 +VTESLIKAGAFDSLGH RKGL L+H DAVDSV+ TKKA GQFDLF D G Sbjct 902 RVTESLIKAGAFDSLGHPRKGLALIHEDAVDSVISTKKAADKGQFDLFAGLGGGDSAGGV 961 Query 961 DP-VFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVP 1019 +P VF ++VPD+EW+ KHKLALEREMLGLYVSGHPL+G LAAQ DT + IL G++ Sbjct 962 EPSVFDVQVPDEEWDRKHKLALEREMLGLYVSGHPLDGYEAALAAQTDTELTTILGGELK 1021 Query 1020 NDAQVRVGGILASVNRRVNK-NGMPWASAQLEDLTGG-IEVMFFPHTYSSYGADIVDDAV 1077 + +V++GGI++SV+RRV+K +G PWA +ED G +E++ F YS +V+D + Sbjct 1022 HGREVKIGGIISSVDRRVSKRDGSPWAIVTIEDHNGASVELLVFNKVYSIVAPQVVEDNI 1081 Query 1078 VLVNAKVAVRDDRIALIANDLTVPDFS-NAEVERPLAVSLPTRQCTFDKVSALKQVLARH 1136 +L A +++RDDR+++ +DL D + PL +++ T QCT + + LK VL + Sbjct 1082 ILAKAHISIRDDRMSVFCDDLRAADLGPGSGTGVPLRLTMTTEQCTLENIHRLKNVLVSN 1141 Query 1137 PGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPGCLG 1183 G + V+L L+ G+ T + L ++LRV S LMGDLK +G G LG Sbjct 1142 AGQTDVYLNLVDGNESTLMVLGENLRVDRSANLMGDLKATMGAGILG 1188 Lambda K H 0.319 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3016569048210 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40