BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1549
Length=175
Score E
Sequences producing significant alignments: (Bits) Value
gi|57116883|ref|YP_177818.1| fatty-acid-CoA ligase [Mycobacteriu... 360 5e-98
gi|289569585|ref|ZP_06449812.1| fatty-acid-CoA ligase fadD11_1 [... 354 2e-96
gi|31792735|ref|NP_855228.1| fatty-acid-CoA ligase [Mycobacteriu... 354 3e-96
gi|289753636|ref|ZP_06513014.1| fatty-acid-CoA ligase [Mycobacte... 354 3e-96
gi|289447160|ref|ZP_06436904.1| fatty-acid-CoA ligase fadD11 [My... 354 3e-96
gi|289574233|ref|ZP_06454460.1| fatty-acid-CoA ligase fadD11 [My... 352 1e-95
gi|340626570|ref|YP_004745022.1| putative fatty-acid-coa ligase ... 347 3e-94
gi|254550568|ref|ZP_05141015.1| fatty-acid-CoA ligase [Mycobacte... 294 4e-78
gi|289750116|ref|ZP_06509494.1| fatty-acid-CoA ligase fadD11 [My... 290 4e-77
gi|297731104|ref|ZP_06960222.1| fatty-acid-CoA ligase [Mycobacte... 276 8e-73
gi|289443003|ref|ZP_06432747.1| possible fatty-acid-coa ligase f... 273 7e-72
gi|240167941|ref|ZP_04746600.1| fatty-acid-CoA ligase, FadD11 [M... 257 5e-67
gi|254775671|ref|ZP_05217187.1| putative acyl-CoA dehydrogenase ... 253 6e-66
gi|118464822|ref|YP_882403.1| acyl-CoA dehydrogenase [Mycobacter... 252 1e-65
gi|41407358|ref|NP_960194.1| FadD11_1 [Mycobacterium avium subsp... 250 5e-65
gi|254821477|ref|ZP_05226478.1| FadD11_1 [Mycobacterium intracel... 249 1e-64
gi|342860867|ref|ZP_08717517.1| acyl-CoA dehydrogenase [Mycobact... 242 2e-62
gi|183982383|ref|YP_001850674.1| fatty-acid-CoA ligase, FadD11 [... 240 6e-62
gi|118617196|ref|YP_905528.1| fatty-acid-CoA ligase, FadD11 [Myc... 240 7e-62
gi|296164428|ref|ZP_06847002.1| possible long-chain-fatty-acid--... 238 2e-61
gi|333990813|ref|YP_004523427.1| fatty-acid-CoA ligase [Mycobact... 228 2e-58
gi|333919895|ref|YP_004493476.1| fatty-acid-CoA ligase fadD11 [A... 213 1e-53
gi|111024068|ref|YP_707040.1| long-chain-fatty-acid--CoA ligase ... 202 2e-50
gi|333918846|ref|YP_004492427.1| fatty-acid-CoA ligase, FadD11 [... 191 3e-47
gi|229489202|ref|ZP_04383068.1| FadD11_2 [Rhodococcus erythropol... 175 2e-42
gi|300789064|ref|YP_003769355.1| acyl-CoA synthetase-related pro... 175 3e-42
gi|340530696|gb|AEK45901.1| acyl-CoA synthetase-related protein ... 174 3e-42
gi|226308155|ref|YP_002768115.1| fatty-acid--CoA ligase [Rhodoco... 174 4e-42
gi|169628953|ref|YP_001702602.1| fatty-acid-CoA ligase FadD [Myc... 161 3e-38
gi|336457474|gb|EGO36483.1| AMP-forming long-chain acyl-CoA synt... 158 3e-37
gi|254775190|ref|ZP_05216706.1| FadD11_2 [Mycobacterium avium su... 158 3e-37
gi|41407807|ref|NP_960643.1| FadD11_2 [Mycobacterium avium subsp... 158 3e-37
gi|226304297|ref|YP_002764255.1| fatty-acid--CoA ligase [Rhodoco... 147 6e-34
gi|333920308|ref|YP_004493889.1| hypothetical protein AS9A_2642 ... 143 1e-32
gi|54024881|ref|YP_119123.1| putative acyl-CoA synthetase [Nocar... 140 5e-32
gi|111019699|ref|YP_702671.1| long-chain-fatty-acid--CoA ligase ... 140 1e-31
gi|333918401|ref|YP_004491982.1| AMP-dependent synthetase and li... 136 1e-30
gi|158314759|ref|YP_001507267.1| AMP-dependent synthetase and li... 136 1e-30
gi|111019695|ref|YP_702667.1| long-chain-fatty-acid--CoA ligase ... 134 7e-30
gi|240168703|ref|ZP_04747362.1| fatty-acid-CoA ligase [Mycobacte... 132 1e-29
gi|343928139|ref|ZP_08767595.1| putative fatty-acid--CoA ligase ... 130 1e-28
gi|183983379|ref|YP_001851670.1| fatty-acid-CoA ligase [Mycobact... 128 3e-28
gi|262202830|ref|YP_003274038.1| AMP-dependent synthetase and li... 117 7e-25
gi|226361926|ref|YP_002779704.1| fatty-acid--CoA ligase [Rhodoco... 108 4e-22
gi|288922716|ref|ZP_06416888.1| AMP-dependent synthetase and lig... 100 1e-19
gi|288919356|ref|ZP_06413690.1| AMP-dependent synthetase and lig... 99.8 1e-19
gi|284044961|ref|YP_003395301.1| AMP-dependent synthetase and li... 98.2 4e-19
gi|319950300|ref|ZP_08024219.1| long-chain-fatty-acid--CoA ligas... 82.8 2e-14
gi|108805260|ref|YP_645197.1| AMP-dependent synthetase and ligas... 82.8 2e-14
gi|163846661|ref|YP_001634705.1| AMP-dependent synthetase and li... 80.1 1e-13
>gi|57116883|ref|YP_177818.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis H37Rv]
gi|148661345|ref|YP_001282868.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis H37Ra]
gi|1723004|sp|Q10777.1|Y1549_MYCTU RecName: Full=Uncharacterized protein Rv1549/MT1599.1
gi|38684032|emb|CAE55402.1| POSSIBLE FATTY-ACID-CoA LIGASE FADD11.1 (FATTY-ACID-CoA SYNTHETASE)
(FATTY-ACID-CoA SYNTHASE) [Mycobacterium tuberculosis
H37Rv]
gi|148505497|gb|ABQ73306.1| fatty-acid-CoA ligase FadD11.1 [Mycobacterium tuberculosis H37Ra]
Length=175
Score = 360 bits (924), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 VVAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR 60
+VAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR
Sbjct 1 MVAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR 60
Query 61 TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF 120
TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF
Sbjct 61 TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF 120
Query 121 SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPARSR 175
SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPARSR
Sbjct 121 SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPARSR 175
>gi|289569585|ref|ZP_06449812.1| fatty-acid-CoA ligase fadD11_1 [Mycobacterium tuberculosis T17]
gi|289543339|gb|EFD46987.1| fatty-acid-CoA ligase fadD11_1 [Mycobacterium tuberculosis T17]
Length=658
Score = 354 bits (909), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 5 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 64
PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct 23 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 82
Query 65 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 124
NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct 83 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 142
Query 125 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA 172
TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP
Sbjct 143 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG 190
>gi|31792735|ref|NP_855228.1| fatty-acid-CoA ligase [Mycobacterium bovis AF2122/97]
gi|121637471|ref|YP_977694.1| putative fatty-acid-CoA ligase fadD11 [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224989945|ref|YP_002644632.1| putative fatty-acid-CoA ligase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|31618325|emb|CAD96243.1| POSSIBLE FATTY-ACID-COA LIGASE FADD11 (FATTY-ACID-COA SYNTHETASE)
(FATTY-ACID-COA SYNTHASE) [Mycobacterium bovis AF2122/97]
gi|121493118|emb|CAL71589.1| Possible fatty-acid-CoA ligase fadD11 [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224773058|dbj|BAH25864.1| putative fatty-acid-CoA ligase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341601489|emb|CCC64162.1| possible fatty-acid-CoA ligase fadD11 [Mycobacterium bovis BCG
str. Moreau RDJ]
Length=647
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 5 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 64
PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct 12 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 71
Query 65 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 124
NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct 72 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 131
Query 125 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA 172
TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP
Sbjct 132 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG 179
>gi|289753636|ref|ZP_06513014.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis EAS054]
gi|289694223|gb|EFD61652.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis EAS054]
Length=647
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 5 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 64
PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct 12 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 71
Query 65 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 124
NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct 72 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 131
Query 125 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA 172
TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP
Sbjct 132 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG 179
>gi|289447160|ref|ZP_06436904.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CPHL_A]
gi|339631620|ref|YP_004723262.1| hypothetical protein MAF_15760 [Mycobacterium africanum GM041182]
gi|289420118|gb|EFD17319.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CPHL_A]
gi|339330976|emb|CCC26648.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=647
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 5 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 64
PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct 12 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 71
Query 65 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 124
NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct 72 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 131
Query 125 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA 172
TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP
Sbjct 132 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG 179
>gi|289574233|ref|ZP_06454460.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis K85]
gi|289538664|gb|EFD43242.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis K85]
Length=647
Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 5 PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 64
PCFRVLRLWTYAHRCDLGHTDPLSRRT+MTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct 12 PCFRVLRLWTYAHRCDLGHTDPLSRRTKMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG 71
Query 65 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 124
NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct 72 NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN 131
Query 125 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA 172
TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP
Sbjct 132 TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG 179
>gi|340626570|ref|YP_004745022.1| putative fatty-acid-coa ligase fadd11 [Mycobacterium canettii
CIPT 140010059]
gi|340004760|emb|CCC43904.1| putative fatty-acid-coa ligase fadd11 (fatty-acid-CoA synthetase)
(fatty-acid-CoA synthase) [Mycobacterium canettii CIPT
140010059]
Length=640
Score = 347 bits (891), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/171 (98%), Positives = 168/171 (99%), Gaps = 0/171 (0%)
Query 1 VVAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR 60
+VAAPCFRVLRL TYAHRCDLGHTDPL RRTEMTTTERPTTMCEAFQRTAVMDPDAVALR
Sbjct 1 MVAAPCFRVLRLSTYAHRCDLGHTDPLPRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR 60
Query 61 TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF 120
TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF
Sbjct 61 TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF 120
Query 121 SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP 171
SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVD APP
Sbjct 121 SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDCAPP 171
>gi|254550568|ref|ZP_05141015.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|294996515|ref|ZP_06802206.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis 210]
gi|297634117|ref|ZP_06951897.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis KZN 4207]
gi|313658436|ref|ZP_07815316.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis KZN V2475]
gi|323719997|gb|EGB29109.1| fatty-acid-CoA ligase fadD11_1 [Mycobacterium tuberculosis CDC1551A]
gi|339294523|gb|AEJ46634.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CCDC5079]
gi|339298159|gb|AEJ50269.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CCDC5180]
Length=143
Score = 294 bits (752), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG
Sbjct 1 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR
Sbjct 61 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 120
Query 153 VRASGVPIEHIVCVDGAPPARSR 175
VRASGVPIEHIVCVDGAPPARSR
Sbjct 121 VRASGVPIEHIVCVDGAPPARSR 143
>gi|289750116|ref|ZP_06509494.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis T92]
gi|289690703|gb|EFD58132.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis T92]
Length=608
Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG
Sbjct 1 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR
Sbjct 61 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 120
Query 153 VRASGVPIEHIVCVDGAPP 171
VRASGVPIEHIVCVDGAPP
Sbjct 121 VRASGVPIEHIVCVDGAPP 139
>gi|297731104|ref|ZP_06960222.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis KZN R506]
Length=134
Score = 276 bits (706), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 42 MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN 101
MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN
Sbjct 1 MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN 60
Query 102 RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE 161
RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE
Sbjct 61 RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE 120
Query 162 HIVCVDGAPPARSR 175
HIVCVDGAPPARSR
Sbjct 121 HIVCVDGAPPARSR 134
>gi|289443003|ref|ZP_06432747.1| possible fatty-acid-coa ligase fadd11 [Mycobacterium tuberculosis
T46]
gi|289415922|gb|EFD13162.1| possible fatty-acid-coa ligase fadd11 [Mycobacterium tuberculosis
T46]
Length=599
Score = 273 bits (698), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 42 MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN 101
MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN
Sbjct 1 MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN 60
Query 102 RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE 161
RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE
Sbjct 61 RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE 120
Query 162 HIVCVDGAPP 171
HIVCVDGAPP
Sbjct 121 HIVCVDGAPP 130
>gi|240167941|ref|ZP_04746600.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium kansasii ATCC 12478]
Length=614
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/138 (87%), Positives = 131/138 (95%), Gaps = 0/138 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MTTTERP TMC+AFQRTA +DPDAVALRTPGG +T+TWR+YA QVR VAAGLAGLGV RG
Sbjct 1 MTTTERPATMCQAFQRTAAIDPDAVALRTPGGARTLTWREYADQVRHVAAGLAGLGVGRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANRIEFYPL+VGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVV+CE+QYVDR
Sbjct 61 DTVSLMMANRIEFYPLEVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVLCEEQYVDR 120
Query 153 VRASGVPIEHIVCVDGAP 170
+RASG PI+HIVC+DGAP
Sbjct 121 IRASGAPIDHIVCIDGAP 138
>gi|254775671|ref|ZP_05217187.1| putative acyl-CoA dehydrogenase [Mycobacterium avium subsp. avium
ATCC 25291]
Length=606
Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 115/137 (84%), Positives = 126/137 (92%), Gaps = 0/137 (0%)
Query 35 TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT 94
T ERP T+CEAFQR A +DPDAV LRTPG NQT+TWR+ A QVR+VAAGLAGLGVRRGDT
Sbjct 2 TAERPATLCEAFQRNAAIDPDAVVLRTPGANQTLTWRELAEQVRKVAAGLAGLGVRRGDT 61
Query 95 VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR 154
VSLMMANRIEFYPL +GAQH+GATSFSVYNTLPAEQLTY+FDNAGTKV ICEQQYVDR+R
Sbjct 62 VSLMMANRIEFYPLAIGAQHLGATSFSVYNTLPAEQLTYLFDNAGTKVAICEQQYVDRIR 121
Query 155 ASGVPIEHIVCVDGAPP 171
ASG P+EHIVC+DGAPP
Sbjct 122 ASGAPVEHIVCIDGAPP 138
>gi|118464822|ref|YP_882403.1| acyl-CoA dehydrogenase [Mycobacterium avium 104]
gi|118166109|gb|ABK67006.1| putative acyl-CoA dehydrogenase [Mycobacterium avium 104]
Length=606
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/137 (84%), Positives = 126/137 (92%), Gaps = 0/137 (0%)
Query 35 TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT 94
T ERP T+CEAFQR A +DPDAV LRTPG QT+TWR+ A QVR+VAAGLAGLGVRRGDT
Sbjct 2 TAERPATLCEAFQRNAAIDPDAVVLRTPGATQTLTWRELAEQVRKVAAGLAGLGVRRGDT 61
Query 95 VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR 154
VSLMMANRIEFYPL++GAQH+GATSFSVYNTLPAEQLTY+FDNAGTKV ICEQQYVDR+R
Sbjct 62 VSLMMANRIEFYPLEIGAQHLGATSFSVYNTLPAEQLTYLFDNAGTKVAICEQQYVDRIR 121
Query 155 ASGVPIEHIVCVDGAPP 171
ASG P+EHIVC+DGAPP
Sbjct 122 ASGAPVEHIVCIDGAPP 138
>gi|41407358|ref|NP_960194.1| FadD11_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395710|gb|AAS03577.1| FadD11_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457910|gb|EGO36901.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium avium
subsp. paratuberculosis S397]
Length=606
Score = 250 bits (639), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 113/137 (83%), Positives = 125/137 (92%), Gaps = 0/137 (0%)
Query 35 TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT 94
T ERP T+CEAFQR A +DPDAV LRTPG QT+TWR+ A QVR+ AAGLAGLGVRRGDT
Sbjct 2 TAERPATLCEAFQRNAAIDPDAVVLRTPGATQTLTWRELAEQVRKFAAGLAGLGVRRGDT 61
Query 95 VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR 154
VSLMMANRIEFYPL++GAQH+GATSFSVYNTLPAEQLTY+FDNAGTKV ICEQQYVDR+R
Sbjct 62 VSLMMANRIEFYPLEIGAQHLGATSFSVYNTLPAEQLTYLFDNAGTKVAICEQQYVDRIR 121
Query 155 ASGVPIEHIVCVDGAPP 171
ASG P+EHIVC+DGAPP
Sbjct 122 ASGAPVEHIVCIDGAPP 138
>gi|254821477|ref|ZP_05226478.1| FadD11_1 [Mycobacterium intracellulare ATCC 13950]
Length=608
Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 113/139 (82%), Positives = 127/139 (92%), Gaps = 0/139 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MTT E P T+CEAFQRTA +DP+AVALRTPG QT+TWR+ A QVR+VAAGLAGLGVRRG
Sbjct 1 MTTAEHPATLCEAFQRTAAIDPNAVALRTPGDTQTLTWRELATQVRKVAAGLAGLGVRRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANRIEFYP ++GAQH+GATSFSVY+TLPAEQLTY+FDNAGTKV ICE QYVDR
Sbjct 61 DTVSLMMANRIEFYPFEIGAQHLGATSFSVYSTLPAEQLTYLFDNAGTKVAICEAQYVDR 120
Query 153 VRASGVPIEHIVCVDGAPP 171
+RASG PIEHIVC+DG+PP
Sbjct 121 IRASGAPIEHIVCIDGSPP 139
>gi|342860867|ref|ZP_08717517.1| acyl-CoA dehydrogenase [Mycobacterium colombiense CECT 3035]
gi|342131891|gb|EGT85148.1| acyl-CoA dehydrogenase [Mycobacterium colombiense CECT 3035]
Length=608
Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/139 (80%), Positives = 124/139 (90%), Gaps = 0/139 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MTT P T+CEAFQR A ++PDAV LRTPG QTMTWR+ A QVR+VAAGLAGLG+RRG
Sbjct 1 MTTPRDPATLCEAFQRNAAIEPDAVVLRTPGATQTMTWRECAEQVRKVAAGLAGLGIRRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
D VSLMMANRIEFYPL++GAQH+GATSFSVYNTLPAEQLTY+F NA TKV ICE+QYVDR
Sbjct 61 DAVSLMMANRIEFYPLEIGAQHLGATSFSVYNTLPAEQLTYLFGNADTKVAICEEQYVDR 120
Query 153 VRASGVPIEHIVCVDGAPP 171
+RASGVPIEHIVC+DGAPP
Sbjct 121 IRASGVPIEHIVCIDGAPP 139
>gi|183982383|ref|YP_001850674.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium marinum M]
gi|183175709|gb|ACC40819.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium marinum M]
Length=608
Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 120/138 (87%), Positives = 131/138 (95%), Gaps = 0/138 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MT TERPTTMCEAFQR+A +DPDA+ALRTPGG QT+TWR+YA QVR+VA GLAGLGV RG
Sbjct 1 MTPTERPTTMCEAFQRSAAIDPDAIALRTPGGAQTLTWREYADQVRQVAGGLAGLGVGRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANR+EFYPL+VGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE+QYVDR
Sbjct 61 DTVSLMMANRVEFYPLEVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEEQYVDR 120
Query 153 VRASGVPIEHIVCVDGAP 170
+RASG PIEHIVC+DGAP
Sbjct 121 IRASGAPIEHIVCIDGAP 138
>gi|118617196|ref|YP_905528.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium ulcerans Agy99]
gi|118569306|gb|ABL04057.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium ulcerans Agy99]
Length=608
Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/138 (87%), Positives = 131/138 (95%), Gaps = 0/138 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MT TERPTTMCEAFQR+A +DPDA+ALRTPGG QT+TWR+YA QVR+VA GLAGLGV RG
Sbjct 1 MTPTERPTTMCEAFQRSAAIDPDAIALRTPGGAQTLTWREYADQVRQVAGGLAGLGVGRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANR+EFYPL+VGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE+QYVDR
Sbjct 61 DTVSLMMANRVEFYPLEVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEEQYVDR 120
Query 153 VRASGVPIEHIVCVDGAP 170
+RASG PIEHIVC+DGAP
Sbjct 121 IRASGAPIEHIVCIDGAP 138
>gi|296164428|ref|ZP_06847002.1| possible long-chain-fatty-acid--CoA ligase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900210|gb|EFG79642.1| possible long-chain-fatty-acid--CoA ligase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=608
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/139 (80%), Positives = 124/139 (90%), Gaps = 0/139 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MTT ERP T+CEAFQRTA DP AVALR+PG QTMTW + AAQVRRV AGLAGLGV RG
Sbjct 1 MTTAERPVTLCEAFQRTASTDPGAVALRSPGDTQTMTWSELAAQVRRVTAGLAGLGVGRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANR+EFYP ++GAQH+GATSFSVYNTLPAEQLTY+F NA T+VVICE+QYV+R
Sbjct 61 DTVSLMMANRVEFYPFEIGAQHLGATSFSVYNTLPAEQLTYLFANADTRVVICEEQYVER 120
Query 153 VRASGVPIEHIVCVDGAPP 171
+RASG PIEHIVC+DG+PP
Sbjct 121 IRASGAPIEHIVCIDGSPP 139
>gi|333990813|ref|YP_004523427.1| fatty-acid-CoA ligase [Mycobacterium sp. JDM601]
gi|333486781|gb|AEF36173.1| fatty-acid-CoA ligase FadD11 [Mycobacterium sp. JDM601]
Length=611
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/138 (79%), Positives = 120/138 (87%), Gaps = 0/138 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MT T TT+CEAFQRTA DPD VALRT GG QT+TWR+YAAQVR+VAAGLAGLGV RG
Sbjct 1 MTGTPPATTLCEAFQRTAATDPDGVALRTVGGGQTLTWREYAAQVRQVAAGLAGLGVCRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTVSLMMANRIEFYPL+VGAQH GATSFSVYNTLPAEQL + F NAGTKVVICEQ YV+
Sbjct 61 DTVSLMMANRIEFYPLEVGAQHAGATSFSVYNTLPAEQLGHQFGNAGTKVVICEQPYVET 120
Query 153 VRASGVPIEHIVCVDGAP 170
+R+SG P+EHIVC+DG P
Sbjct 121 IRSSGAPVEHIVCIDGRP 138
>gi|333919895|ref|YP_004493476.1| fatty-acid-CoA ligase fadD11 [Amycolicicoccus subflavus DQS3-9A1]
gi|333482116|gb|AEF40676.1| Fatty-acid-CoA ligase fadD11 [Amycolicicoccus subflavus DQS3-9A1]
Length=599
Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/132 (71%), Positives = 117/132 (89%), Gaps = 0/132 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
TT+C+AFQRTA++DP AVALRTPG T+TW YAAQVR ++AGLAGLG+ RGDTV+LMM
Sbjct 3 TTLCDAFQRTAIVDPHAVALRTPGDTATLTWGQYAAQVRDISAGLAGLGIGRGDTVALMM 62
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
+NRIEFYP++VGAQHVGATSFSVYN+L AEQLTY+F+NAG ++V CE+QY++R++ASG P
Sbjct 63 SNRIEFYPIEVGAQHVGATSFSVYNSLAAEQLTYIFNNAGNRIVFCEEQYIERIQASGAP 122
Query 160 IEHIVCVDGAPP 171
I+HIVC+D P
Sbjct 123 IDHIVCIDADVP 134
>gi|111024068|ref|YP_707040.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
gi|110823598|gb|ABG98882.1| probable long-chain-fatty-acid--CoA ligase [Rhodococcus jostii
RHA1]
Length=613
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/135 (69%), Positives = 109/135 (81%), Gaps = 0/135 (0%)
Query 33 MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG 92
MT E P T+C AFQRTA +DPDA+ALRT G QT+TWR Y++QVR VAAG A LGVRRG
Sbjct 1 MTIEEAPHTLCAAFQRTAAIDPDAIALRTVGDAQTLTWRQYSSQVRDVAAGFAALGVRRG 60
Query 93 DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR 152
DTV+LMMANR+EFYP+DVGAQHVGATSFS+YNTLPA + YV NA KVV+CE QYV+R
Sbjct 61 DTVALMMANRVEFYPIDVGAQHVGATSFSIYNTLPASAIAYVLGNAEAKVVVCEAQYVER 120
Query 153 VRASGVPIEHIVCVD 167
+R SG +E IV +D
Sbjct 121 IRESGAQVEQIVVID 135
>gi|333918846|ref|YP_004492427.1| fatty-acid-CoA ligase, FadD11 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481067|gb|AEF39627.1| Fatty-acid-CoA ligase, FadD11 [Amycolicicoccus subflavus DQS3-9A1]
Length=609
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/134 (64%), Positives = 112/134 (84%), Gaps = 0/134 (0%)
Query 35 TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT 94
T+ PTT+CEAFQRTAV+ P+A+ALRTPG Q++TW+DY+ V +VAAGL+ G+ RGDT
Sbjct 2 TSPVPTTLCEAFQRTAVIAPEAIALRTPGDRQSITWKDYSTDVEKVAAGLSARGIGRGDT 61
Query 95 VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR 154
V++MM+NR+EFYP++VGAQHVGATSFSVYNTL EQL+YVF NAG +VICE Q+ +R+
Sbjct 62 VAIMMSNRVEFYPVEVGAQHVGATSFSVYNTLAPEQLSYVFTNAGICMVICEAQFAERIH 121
Query 155 ASGVPIEHIVCVDG 168
+SGV +E IV ++G
Sbjct 122 SSGVALEQIVVLEG 135
>gi|229489202|ref|ZP_04383068.1| FadD11_2 [Rhodococcus erythropolis SK121]
gi|229324706|gb|EEN90461.1| FadD11_2 [Rhodococcus erythropolis SK121]
Length=600
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/134 (62%), Positives = 102/134 (77%), Gaps = 0/134 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
TT+C AFQR + + PDAVALR G +T+TWR Y QVR VAAGLAG+GV GDTV+LMM
Sbjct 2 TTLCAAFQRVSAVAPDAVALRDIGDARTLTWRAYGEQVRDVAAGLAGIGVGHGDTVALMM 61
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
+NRIEFYP+DVGAQH+GATSFS+YNT E + Y+ N+G +V++CE QYVD VR SG
Sbjct 62 SNRIEFYPIDVGAQHLGATSFSIYNTSAPEAIQYILANSGARVLVCEAQYVDTVRRSGAT 121
Query 160 IEHIVCVDGAPPAR 173
++ IV VD P A+
Sbjct 122 LDTIVVVDAQPSAQ 135
>gi|300789064|ref|YP_003769355.1| acyl-CoA synthetase-related protein [Amycolatopsis mediterranei
U32]
gi|299798578|gb|ADJ48953.1| acyl-CoA synthetase-related protein [Amycolatopsis mediterranei
U32]
Length=426
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/130 (61%), Positives = 101/130 (78%), Gaps = 0/130 (0%)
Query 39 PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM 98
P T+CEAFQR A ++PDAVA+RT G Q ++WR QVR +AAGLAGLGVRRGD V+LM
Sbjct 24 PATLCEAFQRIATVEPDAVAIRTVGATQELSWRKLGEQVRFLAAGLAGLGVRRGDAVALM 83
Query 99 MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGV 158
MANRIEFYP+D+ AQH+GA FSVYNTL A Q+ + N+ VV+CE+++V+ +R SG
Sbjct 84 MANRIEFYPVDLAAQHLGAIPFSVYNTLAASQIGQLLRNSECTVVVCEERFVEIIRESGA 143
Query 159 PIEHIVCVDG 168
PIEH++ VDG
Sbjct 144 PIEHVIVVDG 153
>gi|340530696|gb|AEK45901.1| acyl-CoA synthetase-related protein [Amycolatopsis mediterranei
S699]
Length=414
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/130 (61%), Positives = 101/130 (78%), Gaps = 0/130 (0%)
Query 39 PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM 98
P T+CEAFQR A ++PDAVA+RT G Q ++WR QVR +AAGLAGLGVRRGD V+LM
Sbjct 12 PATLCEAFQRIATVEPDAVAIRTVGATQELSWRKLGEQVRFLAAGLAGLGVRRGDAVALM 71
Query 99 MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGV 158
MANRIEFYP+D+ AQH+GA FSVYNTL A Q+ + N+ VV+CE+++V+ +R SG
Sbjct 72 MANRIEFYPVDLAAQHLGAIPFSVYNTLAASQIGQLLRNSECTVVVCEERFVEIIRESGA 131
Query 159 PIEHIVCVDG 168
PIEH++ VDG
Sbjct 132 PIEHVIVVDG 141
>gi|226308155|ref|YP_002768115.1| fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
gi|226187272|dbj|BAH35376.1| putative fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
Length=600
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 101/128 (79%), Gaps = 0/128 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
TT+C AFQR + + PDAVALR G +T+TWR+YA QVR VAAGLAG+GV GDTV+LMM
Sbjct 2 TTLCAAFQRVSAVAPDAVALRDIGDARTLTWREYAEQVREVAAGLAGIGVGHGDTVALMM 61
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
+NRIEFYP+DVGAQH+GATSFS+YNT E + Y+ N+G +V++CE +YVD VR SG
Sbjct 62 SNRIEFYPIDVGAQHLGATSFSIYNTSAPEAIRYILANSGARVLVCEDRYVDTVRRSGAT 121
Query 160 IEHIVCVD 167
+E IV VD
Sbjct 122 LETIVVVD 129
>gi|169628953|ref|YP_001702602.1| fatty-acid-CoA ligase FadD [Mycobacterium abscessus ATCC 19977]
gi|169240920|emb|CAM61948.1| Probable fatty-acid-CoA ligase FadD [Mycobacterium abscessus]
Length=584
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/135 (60%), Positives = 96/135 (72%), Gaps = 3/135 (2%)
Query 39 PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM 98
P T+C AFQRTA PD VALRT GG +TWR Y +VR +A+GLAGLGV GDTV+LM
Sbjct 4 PATLCAAFQRTAAQHPDRVALRTVGGGVVITWRQYRERVREIASGLAGLGVGPGDTVALM 63
Query 99 MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS-- 156
+ NR EF+ D H GAT FSVYNT P E L Y FDNA +VVICEQQ++ +VR++
Sbjct 64 LTNRPEFHLCDTAVLHCGATPFSVYNTNPPELLGYQFDNADNRVVICEQQFLPQVRSAVG 123
Query 157 -GVPIEHIVCVDGAP 170
G +EHI+CVDGAP
Sbjct 124 LGGKVEHIICVDGAP 138
>gi|336457474|gb|EGO36483.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium avium
subsp. paratuberculosis S397]
Length=606
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%)
Query 38 RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL 97
RPTT+CEAFQ TA PDAVALRT G T+TWR Y +VR +AAGLAGLGV GDTV+L
Sbjct 8 RPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVAL 67
Query 98 MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS- 156
MM+NR EF+ D H GAT FSVYNT P E L Y FDNA VVICE ++ +V A+
Sbjct 68 MMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFLPQVLAAA 127
Query 157 --GVPIEHIVCVDGA 169
G +EH+VCVDGA
Sbjct 128 QQGGTVEHVVCVDGA 142
>gi|254775190|ref|ZP_05216706.1| FadD11_2 [Mycobacterium avium subsp. avium ATCC 25291]
Length=606
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%)
Query 38 RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL 97
RPTT+CEAFQ TA PDAVALRT G T+TWR Y +VR +AAGLAGLGV GDTV+L
Sbjct 8 RPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVAL 67
Query 98 MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS- 156
MM+NR EF+ D H GAT FSVYNT P E L Y FDNA VVICE ++ +V A+
Sbjct 68 MMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFLPQVLAAA 127
Query 157 --GVPIEHIVCVDGA 169
G +EH+VCVDGA
Sbjct 128 QQGGTVEHVVCVDGA 142
>gi|41407807|ref|NP_960643.1| FadD11_2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396161|gb|AAS04026.1| FadD11_2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=606
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%)
Query 38 RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL 97
RPTT+CEAFQ TA PDAVALRT G T+TWR Y +VR +AAGLAGLGV GDTV+L
Sbjct 8 RPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVAL 67
Query 98 MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS- 156
MM+NR EF+ D H GAT FSVYNT P E L Y FDNA VVICE ++ +V A+
Sbjct 68 MMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFMPQVLAAA 127
Query 157 --GVPIEHIVCVDGA 169
G +EH+VCVDGA
Sbjct 128 QQGGTVEHVVCVDGA 142
>gi|226304297|ref|YP_002764255.1| fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
gi|226183412|dbj|BAH31516.1| putative fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
Length=615
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/128 (51%), Positives = 93/128 (73%), Gaps = 0/128 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
T+CE FQRTA +P+AVALRT GG+ +TWR+YA +VR ++ GLA LG+R GD V LMM
Sbjct 12 NTLCEEFQRTAKSNPEAVALRTVGGSHQITWREYAGRVRDISTGLAALGIRHGDAVGLMM 71
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
+NR EF +D H+GA +S+YN+ AEQ+ ++ N+ +KVV+CE ++VD +RA+G
Sbjct 72 SNRPEFNLVDTAILHLGAVPYSIYNSNSAEQIAHLLSNSESKVVLCENRFVDTIRAAGGQ 131
Query 160 IEHIVCVD 167
+E IV +D
Sbjct 132 LESIVVID 139
>gi|333920308|ref|YP_004493889.1| hypothetical protein AS9A_2642 [Amycolicicoccus subflavus DQS3-9A1]
gi|333482529|gb|AEF41089.1| hypothetical protein AS9A_2642 [Amycolicicoccus subflavus DQS3-9A1]
Length=592
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/134 (51%), Positives = 91/134 (68%), Gaps = 2/134 (1%)
Query 36 TERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTV 95
T T+C AFQ P A+RT G+ ++TW+DY +V+R+AAGLA LGV+ GDTV
Sbjct 3 TTNSETLCAAFQAQVARIPGKTAVRTADGSVSLTWQDYGRRVQRMAAGLAALGVKHGDTV 62
Query 96 SLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR- 154
+M+ NR EF+ D H+GA +FSVYN+ PAEQ+ Y+F NA +VVICE Q++D VR
Sbjct 63 GMMLTNRPEFHIADTAILHLGAGAFSVYNSSPAEQIQYIFRNADNRVVICEPQFLDTVRQ 122
Query 155 -ASGVPIEHIVCVD 167
+ G +EHIVCVD
Sbjct 123 ASEGTAVEHIVCVD 136
>gi|54024881|ref|YP_119123.1| putative acyl-CoA synthetase [Nocardia farcinica IFM 10152]
gi|54016389|dbj|BAD57759.1| putative acyl-CoA synthetase [Nocardia farcinica IFM 10152]
Length=609
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/128 (57%), Positives = 96/128 (75%), Gaps = 0/128 (0%)
Query 41 TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA 100
T+ EAFQ T + PD VALRT GG +TWR+Y +VR +AAGLA LG++ GDT+ +M+
Sbjct 18 TVPEAFQETLTLRPDQVALRTVGGTTEITWREYGERVRALAAGLAALGLKHGDTMGIMLT 77
Query 101 NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPI 160
NR EF +D AQHVGAT FSVYNT AEQ+T++F NAG K+V+ EQ ++D +RA+GV +
Sbjct 78 NRPEFNLIDTAAQHVGATPFSVYNTSSAEQITHLFGNAGNKIVVTEQAFLDVIRATGVAL 137
Query 161 EHIVCVDG 168
+HI+ VDG
Sbjct 138 DHIIVVDG 145
>gi|111019699|ref|YP_702671.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
gi|110819229|gb|ABG94513.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
Length=595
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/134 (52%), Positives = 95/134 (71%), Gaps = 3/134 (2%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
T+CEAFQ TA D VA+RT + +MT+ A +VRRVAAGLA LG+ RGDTV +M+
Sbjct 22 NTVCEAFQITAAARADQVAVRTADDSVSMTFGTLAERVRRVAAGLAALGLERGDTVGIML 81
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR---VRAS 156
NR EF+ +D+ A H+GA +FS+YNT +Q+ Y+F +AG ++VI E+ +VDR VR
Sbjct 82 TNRPEFHLVDLAAMHLGALAFSIYNTSAHDQIEYLFADAGNRIVITERAFVDRLTAVRDG 141
Query 157 GVPIEHIVCVDGAP 170
G PI+H++ VDGAP
Sbjct 142 GTPIDHLIVVDGAP 155
>gi|333918401|ref|YP_004491982.1| AMP-dependent synthetase and ligase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480622|gb|AEF39182.1| AMP-dependent synthetase and ligase [Amycolicicoccus subflavus
DQS3-9A1]
Length=595
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/141 (49%), Positives = 92/141 (66%), Gaps = 6/141 (4%)
Query 34 TTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGD 93
T + + T+CEAFQ T +A+RTPGG T+TW Y +VR +AA L +GVR GD
Sbjct 4 TRSSQARTLCEAFQNTVRDYSSRIAVRTPGGATTLTWGQYGERVRAIAAQLHSIGVRHGD 63
Query 94 TVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQY---- 149
TV+LMM NR EF+ +D AQH+GA FS+YNT +Q+ Y+F +A VV+CE +
Sbjct 64 TVALMMTNRPEFHLVDTAAQHLGAIPFSIYNTSSPDQIRYLFGDAENAVVVCEAAFAPVL 123
Query 150 VDRVRASGVPIEHIVCVDGAP 170
VD R +GV +HIVC+DGAP
Sbjct 124 VDGARGTGV--KHIVCIDGAP 142
>gi|158314759|ref|YP_001507267.1| AMP-dependent synthetase and ligase [Frankia sp. EAN1pec]
gi|158110164|gb|ABW12361.1| AMP-dependent synthetase and ligase [Frankia sp. EAN1pec]
Length=773
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/133 (50%), Positives = 88/133 (67%), Gaps = 3/133 (2%)
Query 39 PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM 98
P ++ EAFQR A DP A+AL TP G+ T+TW YA QVR +AA L GVRRGD+V+LM
Sbjct 173 PASLAEAFQRNASRDPQALALSTPDGSATLTWGQYAEQVRDIAAALHAHGVRRGDSVALM 232
Query 99 MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS-- 156
M NR EFYP+D A H+GA FS+YNT AEQ+ ++F +A +V C+ + V +
Sbjct 233 MLNRPEFYPIDTAAIHLGAIPFSIYNTSSAEQIRWLFASAKPSMVFCDSSHAAAVLEAVD 292
Query 157 -GVPIEHIVCVDG 168
G ++ +VCVDG
Sbjct 293 GGTAVKAVVCVDG 305
>gi|111019695|ref|YP_702667.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
gi|110819225|gb|ABG94509.1| probable long-chain-fatty-acid--CoA ligase [Rhodococcus jostii
RHA1]
Length=594
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/132 (52%), Positives = 91/132 (69%), Gaps = 3/132 (2%)
Query 41 TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA 100
T+CEAFQ TA D VALRT G ++T+ + +VRR+ AGLA LGVRRGDTV +M+
Sbjct 22 TLCEAFQITAAARADQVALRTVDGGVSLTFAALSERVRRLTAGLAALGVRRGDTVGIMLT 81
Query 101 NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR---VRASG 157
NR EF+ +D+ A H+GA FS+YNT Q+ Y+F +AG ++VI E+ +VDR VR G
Sbjct 82 NRPEFHIVDLAAMHLGALPFSIYNTSAHNQIEYLFGDAGNRIVITERAFVDRLVAVRDGG 141
Query 158 VPIEHIVCVDGA 169
P++ IV VDGA
Sbjct 142 TPLDLIVVVDGA 153
>gi|240168703|ref|ZP_04747362.1| fatty-acid-CoA ligase [Mycobacterium kansasii ATCC 12478]
Length=612
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/128 (49%), Positives = 88/128 (69%), Gaps = 0/128 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
+T+ +AFQ+TA + PDAVA+RT G +TWR YA +V+++AAGLA LGV+ G TV LM+
Sbjct 18 STLPQAFQQTAALKPDAVAIRTTGDAVVLTWRQYADRVQKIAAGLAALGVKHGHTVGLML 77
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
NR EF+ D A H+GA FS+YNT +Q+ Y+F NA VV E+ ++ +RA+G
Sbjct 78 RNRPEFHLADTAAMHLGAIPFSIYNTSAPDQIRYLFTNAENAVVFTEKDFLPAIRAAGAN 137
Query 160 IEHIVCVD 167
+ H+V VD
Sbjct 138 LAHLVVVD 145
>gi|343928139|ref|ZP_08767595.1| putative fatty-acid--CoA ligase [Gordonia alkanivorans NBRC 16433]
gi|343761939|dbj|GAA14521.1| putative fatty-acid--CoA ligase [Gordonia alkanivorans NBRC 16433]
Length=612
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/128 (49%), Positives = 86/128 (68%), Gaps = 0/128 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
+T+ AFQ+T + PDAVA+RT GG Q +TW YA +V +A GLA LGV RGDTV +M+
Sbjct 18 STLPAAFQQTVTVRPDAVAIRTVGGIQQLTWSQYATRVEAIAGGLAALGVGRGDTVGIML 77
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
NR EF+ +D A H+GA FS+YNT +Q+ Y+F NA ++VI EQ ++ + A+
Sbjct 78 TNRPEFHLVDTAALHLGAVPFSIYNTSAPDQIEYLFGNAENRIVITEQVFLPVITAANTG 137
Query 160 IEHIVCVD 167
+E IV VD
Sbjct 138 VERIVVVD 145
>gi|183983379|ref|YP_001851670.1| fatty-acid-CoA ligase [Mycobacterium marinum M]
gi|183176705|gb|ACC41815.1| fatty-acid-CoA ligase [Mycobacterium marinum M]
Length=615
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/127 (46%), Positives = 86/127 (68%), Gaps = 0/127 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
+T+ +AFQ+TA + PD+VA+RT G +TWR YA +VRR+AAGLA LGV RG TV +M+
Sbjct 18 STLPQAFQQTAAVAPDSVAIRTVGNQAVLTWRQYADRVRRIAAGLAALGVERGHTVGIML 77
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
NR EF+ +D H+GA FS+YNT +Q+ Y+F NA KVV E+ ++ + A+
Sbjct 78 RNRPEFHLVDTAVLHLGAIPFSIYNTSAPDQIKYLFSNAENKVVFTEKDFLPAINAAVAD 137
Query 160 IEHIVCV 166
+ H++ +
Sbjct 138 LAHVIVI 144
>gi|262202830|ref|YP_003274038.1| AMP-dependent synthetase and ligase [Gordonia bronchialis DSM
43247]
gi|262086177|gb|ACY22145.1| AMP-dependent synthetase and ligase [Gordonia bronchialis DSM
43247]
Length=610
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/129 (52%), Positives = 87/129 (68%), Gaps = 0/129 (0%)
Query 40 TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM 99
+T+ EAF +T + PDAVALRT GG Q +TW YA +VR +AAGLA LGV GDTV +M+
Sbjct 18 STLPEAFAQTVTVRPDAVALRTVGGIQEITWAQYAGRVRALAAGLAALGVGHGDTVGIML 77
Query 100 ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP 159
NR EF+ +D A H+GA FSVYNT EQ+ Y+F NAG VV+ EQ ++ +RA+
Sbjct 78 TNRPEFHLIDTAALHLGAVPFSVYNTSSPEQIEYLFGNAGNTVVVTEQVFLPVIRAASTK 137
Query 160 IEHIVCVDG 168
+ + VDG
Sbjct 138 VTSTIVVDG 146
>gi|226361926|ref|YP_002779704.1| fatty-acid--CoA ligase [Rhodococcus opacus B4]
gi|226240411|dbj|BAH50759.1| putative fatty-acid--CoA ligase [Rhodococcus opacus B4]
Length=602
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/130 (50%), Positives = 88/130 (68%), Gaps = 1/130 (0%)
Query 41 TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA 100
T+C AFQ T +P++ ALR G ++T R YA V +A GLAGLGV RGDTV LMM
Sbjct 20 TLCAAFQYTVTKNPESAALRAHGDATSLTRRGYADAVEAIAGGLAGLGVGRGDTVGLMMT 79
Query 101 NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP- 159
NR EF+ +D A H+GA FS+YNT +Q+ Y+ +A +V+ICE+ ++DR+RA+ P
Sbjct 80 NRPEFHLVDTAALHLGAIPFSIYNTSAPDQIEYLLGHAENRVMICERAFLDRIRAAATPH 139
Query 160 IEHIVCVDGA 169
+EHIV +D A
Sbjct 140 LEHIVVIDPA 149
>gi|288922716|ref|ZP_06416888.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
gi|288345935|gb|EFC80292.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
Length=607
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/133 (39%), Positives = 81/133 (61%), Gaps = 4/133 (3%)
Query 41 TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA 100
T+ EAFQRTA D +A R GG +TWR A +VR AAGLAG+G+R+GD +++++
Sbjct 22 TVPEAFQRTAHAQGDDIAFREIGGGAALTWRQTAGRVRDFAAGLAGIGLRKGDRLAILLP 81
Query 101 NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRA--SGV 158
N IE + LD A H+G F+++N+ EQ+ + AG V++ +++ +V + +
Sbjct 82 NTIECHLLDYAAMHLGVVPFTIFNSSSPEQVAHQVGTAGATVMVTSNRFLPKVEEALAQL 141
Query 159 P--IEHIVCVDGA 169
P I+H+V D A
Sbjct 142 PRSIQHLVVSDAA 154
>gi|288919356|ref|ZP_06413690.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
gi|288349245|gb|EFC83488.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
Length=615
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 82/141 (59%), Gaps = 6/141 (4%)
Query 38 RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL 97
+ T+ EAFQRT PD V +RT GG +TW ++ +VR +A LA +G RRG+ V++
Sbjct 20 KAMTLPEAFQRTVATHPDKVGIRTIGGGVELTWAEFGDRVRSLAGSLAKIGCRRGERVAV 79
Query 98 MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS- 156
+M N +E + +D H+GA F ++N+ +Q+ + +A ++V+ E +Y+D+V +
Sbjct 80 LMRNLVENHLVDYAFSHLGAVPFGIFNSSSLDQIVFQIGHAEAEIVVTEARYLDKVAQAV 139
Query 157 ---GVPIEHIVCV--DGAPPA 172
G + HIV DG PA
Sbjct 140 ARLGDQVRHIVVADPDGEGPA 160
>gi|284044961|ref|YP_003395301.1| AMP-dependent synthetase and ligase [Conexibacter woesei DSM
14684]
gi|283949182|gb|ADB51926.1| AMP-dependent synthetase and ligase [Conexibacter woesei DSM
14684]
Length=607
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/131 (42%), Positives = 81/131 (62%), Gaps = 3/131 (2%)
Query 41 TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA 100
T+ EA +RTA PD VA+RT ++TW + A+V +A GLA LGV RGD V+LM++
Sbjct 18 TLGEALRRTAAAHPDLVAVRTLDDALSLTWSELRARVDALAGGLARLGVGRGDNVALMLS 77
Query 101 NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS--GV 158
NR EF+ D+ +GA FS+Y T EQ+ YV +A +V + EQ ++ R+ + +
Sbjct 78 NRPEFHLADLAVVTLGAAPFSIYLTSSPEQIRYVVADAEARVAVVEQAFLGRLLEARREL 137
Query 159 P-IEHIVCVDG 168
P + H++ VDG
Sbjct 138 PLLAHVIVVDG 148
>gi|319950300|ref|ZP_08024219.1| long-chain-fatty-acid--CoA ligase [Dietzia cinnamea P4]
gi|319435992|gb|EFV91193.1| long-chain-fatty-acid--CoA ligase [Dietzia cinnamea P4]
Length=552
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/133 (37%), Positives = 72/133 (55%), Gaps = 3/133 (2%)
Query 41 TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA 100
T+ + F TA P VALR+ +T+ A+V +A L LGV G+ V+LM+
Sbjct 21 TLADLFLATAAAHPGEVALRSHETGAEVTYAQARARVGAIAGTLRELGVAPGEPVALMLR 80
Query 101 NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRV---RASG 157
NR EF+ +D +GA FS+YNT +QL YV +AG K ++ E +V + R S
Sbjct 81 NRPEFHLVDTAVMMLGAVPFSLYNTSAPDQLAYVLADAGVKTIVTESAFVGVLGAARGSA 140
Query 158 VPIEHIVCVDGAP 170
+E +V VD +P
Sbjct 141 PAVERLVLVDESP 153
>gi|108805260|ref|YP_645197.1| AMP-dependent synthetase and ligase [Rubrobacter xylanophilus
DSM 9941]
gi|108766503|gb|ABG05385.1| AMP-dependent synthetase and ligase [Rubrobacter xylanophilus
DSM 9941]
Length=612
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/135 (35%), Positives = 80/135 (60%), Gaps = 3/135 (2%)
Query 38 RPTTMCEAFQRTAVMDPDAVAL--RTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTV 95
R ++ EAF+ T + + AL + G + ++R+ +V A+GLAGLGV RG V
Sbjct 20 RARSLPEAFRMTVLEKAEKPALGEKVGGRWREFSFREVYRRVEDFASGLAGLGVERGSRV 79
Query 96 SLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE-QQYVDRVR 154
++M ANR+ + DV +GA + ++ TL Q+ ++ +++G +VV+ E ++ + VR
Sbjct 80 AIMSANRVGWTVADVAIMSLGAATVPIFPTLGPRQVAHILEDSGARVVVVEGERQLAAVR 139
Query 155 ASGVPIEHIVCVDGA 169
SG +EH+VC+D A
Sbjct 140 GSGASVEHLVCMDEA 154
>gi|163846661|ref|YP_001634705.1| AMP-dependent synthetase and ligase [Chloroflexus aurantiacus
J-10-fl]
gi|163667950|gb|ABY34316.1| AMP-dependent synthetase and ligase [Chloroflexus aurantiacus
J-10-fl]
Length=649
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/117 (41%), Positives = 67/117 (58%), Gaps = 3/117 (2%)
Query 40 TTMCEAFQRTAVMDPDAVALRTP--GGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL 97
TT+ + A D VALR G QT+TWR +A VR A GL LGVRRGD +++
Sbjct 7 TTLPRLLFQNAERFGDKVALREKDYGIWQTVTWRQFADHVRAFAMGLHALGVRRGDVIAI 66
Query 98 MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE-QQYVDRV 153
+ NR E+ + AQ +GA S VY AE++ Y+ AG +V++ E Q+ VD++
Sbjct 67 LGDNRPEWLYAEFAAQTIGAMSIGVYQDSVAEEVYYIVSAAGARVIVVEDQEQVDKI 123
Lambda K H
0.323 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 145800812160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40