BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1549

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116883|ref|YP_177818.1|  fatty-acid-CoA ligase [Mycobacteriu...   360    5e-98
gi|289569585|ref|ZP_06449812.1|  fatty-acid-CoA ligase fadD11_1 [...   354    2e-96
gi|31792735|ref|NP_855228.1|  fatty-acid-CoA ligase [Mycobacteriu...   354    3e-96
gi|289753636|ref|ZP_06513014.1|  fatty-acid-CoA ligase [Mycobacte...   354    3e-96
gi|289447160|ref|ZP_06436904.1|  fatty-acid-CoA ligase fadD11 [My...   354    3e-96
gi|289574233|ref|ZP_06454460.1|  fatty-acid-CoA ligase fadD11 [My...   352    1e-95
gi|340626570|ref|YP_004745022.1|  putative fatty-acid-coa ligase ...   347    3e-94
gi|254550568|ref|ZP_05141015.1|  fatty-acid-CoA ligase [Mycobacte...   294    4e-78
gi|289750116|ref|ZP_06509494.1|  fatty-acid-CoA ligase fadD11 [My...   290    4e-77
gi|297731104|ref|ZP_06960222.1|  fatty-acid-CoA ligase [Mycobacte...   276    8e-73
gi|289443003|ref|ZP_06432747.1|  possible fatty-acid-coa ligase f...   273    7e-72
gi|240167941|ref|ZP_04746600.1|  fatty-acid-CoA ligase, FadD11 [M...   257    5e-67
gi|254775671|ref|ZP_05217187.1|  putative acyl-CoA dehydrogenase ...   253    6e-66
gi|118464822|ref|YP_882403.1|  acyl-CoA dehydrogenase [Mycobacter...   252    1e-65
gi|41407358|ref|NP_960194.1|  FadD11_1 [Mycobacterium avium subsp...   250    5e-65
gi|254821477|ref|ZP_05226478.1|  FadD11_1 [Mycobacterium intracel...   249    1e-64
gi|342860867|ref|ZP_08717517.1|  acyl-CoA dehydrogenase [Mycobact...   242    2e-62
gi|183982383|ref|YP_001850674.1|  fatty-acid-CoA ligase, FadD11 [...   240    6e-62
gi|118617196|ref|YP_905528.1|  fatty-acid-CoA ligase, FadD11 [Myc...   240    7e-62
gi|296164428|ref|ZP_06847002.1|  possible long-chain-fatty-acid--...   238    2e-61
gi|333990813|ref|YP_004523427.1|  fatty-acid-CoA ligase [Mycobact...   228    2e-58
gi|333919895|ref|YP_004493476.1|  fatty-acid-CoA ligase fadD11 [A...   213    1e-53
gi|111024068|ref|YP_707040.1|  long-chain-fatty-acid--CoA ligase ...   202    2e-50
gi|333918846|ref|YP_004492427.1|  fatty-acid-CoA ligase, FadD11 [...   191    3e-47
gi|229489202|ref|ZP_04383068.1|  FadD11_2 [Rhodococcus erythropol...   175    2e-42
gi|300789064|ref|YP_003769355.1|  acyl-CoA synthetase-related pro...   175    3e-42
gi|340530696|gb|AEK45901.1|  acyl-CoA synthetase-related protein ...   174    3e-42
gi|226308155|ref|YP_002768115.1|  fatty-acid--CoA ligase [Rhodoco...   174    4e-42
gi|169628953|ref|YP_001702602.1|  fatty-acid-CoA ligase FadD [Myc...   161    3e-38
gi|336457474|gb|EGO36483.1|  AMP-forming long-chain acyl-CoA synt...   158    3e-37
gi|254775190|ref|ZP_05216706.1|  FadD11_2 [Mycobacterium avium su...   158    3e-37
gi|41407807|ref|NP_960643.1|  FadD11_2 [Mycobacterium avium subsp...   158    3e-37
gi|226304297|ref|YP_002764255.1|  fatty-acid--CoA ligase [Rhodoco...   147    6e-34
gi|333920308|ref|YP_004493889.1|  hypothetical protein AS9A_2642 ...   143    1e-32
gi|54024881|ref|YP_119123.1|  putative acyl-CoA synthetase [Nocar...   140    5e-32
gi|111019699|ref|YP_702671.1|  long-chain-fatty-acid--CoA ligase ...   140    1e-31
gi|333918401|ref|YP_004491982.1|  AMP-dependent synthetase and li...   136    1e-30
gi|158314759|ref|YP_001507267.1|  AMP-dependent synthetase and li...   136    1e-30
gi|111019695|ref|YP_702667.1|  long-chain-fatty-acid--CoA ligase ...   134    7e-30
gi|240168703|ref|ZP_04747362.1|  fatty-acid-CoA ligase [Mycobacte...   132    1e-29
gi|343928139|ref|ZP_08767595.1|  putative fatty-acid--CoA ligase ...   130    1e-28
gi|183983379|ref|YP_001851670.1|  fatty-acid-CoA ligase [Mycobact...   128    3e-28
gi|262202830|ref|YP_003274038.1|  AMP-dependent synthetase and li...   117    7e-25
gi|226361926|ref|YP_002779704.1|  fatty-acid--CoA ligase [Rhodoco...   108    4e-22
gi|288922716|ref|ZP_06416888.1|  AMP-dependent synthetase and lig...   100    1e-19
gi|288919356|ref|ZP_06413690.1|  AMP-dependent synthetase and lig...  99.8    1e-19
gi|284044961|ref|YP_003395301.1|  AMP-dependent synthetase and li...  98.2    4e-19
gi|319950300|ref|ZP_08024219.1|  long-chain-fatty-acid--CoA ligas...  82.8    2e-14
gi|108805260|ref|YP_645197.1|  AMP-dependent synthetase and ligas...  82.8    2e-14
gi|163846661|ref|YP_001634705.1|  AMP-dependent synthetase and li...  80.1    1e-13


>gi|57116883|ref|YP_177818.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis H37Rv]
 gi|148661345|ref|YP_001282868.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis H37Ra]
 gi|1723004|sp|Q10777.1|Y1549_MYCTU RecName: Full=Uncharacterized protein Rv1549/MT1599.1
 gi|38684032|emb|CAE55402.1| POSSIBLE FATTY-ACID-CoA LIGASE FADD11.1 (FATTY-ACID-CoA SYNTHETASE) 
(FATTY-ACID-CoA SYNTHASE) [Mycobacterium tuberculosis 
H37Rv]
 gi|148505497|gb|ABQ73306.1| fatty-acid-CoA ligase FadD11.1 [Mycobacterium tuberculosis H37Ra]
Length=175

 Score =  360 bits (924),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 174/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)

Query  1    VVAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR  60
            +VAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR
Sbjct  1    MVAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR  60

Query  61   TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF  120
            TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF
Sbjct  61   TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF  120

Query  121  SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPARSR  175
            SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPARSR
Sbjct  121  SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPARSR  175


>gi|289569585|ref|ZP_06449812.1| fatty-acid-CoA ligase fadD11_1 [Mycobacterium tuberculosis T17]
 gi|289543339|gb|EFD46987.1| fatty-acid-CoA ligase fadD11_1 [Mycobacterium tuberculosis T17]
Length=658

 Score =  354 bits (909),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)

Query  5    PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  64
            PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct  23   PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  82

Query  65   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  124
            NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct  83   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  142

Query  125  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA  172
            TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP 
Sbjct  143  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG  190


>gi|31792735|ref|NP_855228.1| fatty-acid-CoA ligase [Mycobacterium bovis AF2122/97]
 gi|121637471|ref|YP_977694.1| putative fatty-acid-CoA ligase fadD11 [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224989945|ref|YP_002644632.1| putative fatty-acid-CoA ligase [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|31618325|emb|CAD96243.1| POSSIBLE FATTY-ACID-COA LIGASE FADD11 (FATTY-ACID-COA SYNTHETASE) 
(FATTY-ACID-COA SYNTHASE) [Mycobacterium bovis AF2122/97]
 gi|121493118|emb|CAL71589.1| Possible fatty-acid-CoA ligase fadD11 [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224773058|dbj|BAH25864.1| putative fatty-acid-CoA ligase [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|341601489|emb|CCC64162.1| possible fatty-acid-CoA ligase fadD11 [Mycobacterium bovis BCG 
str. Moreau RDJ]
Length=647

 Score =  354 bits (908),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)

Query  5    PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  64
            PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct  12   PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  71

Query  65   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  124
            NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct  72   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  131

Query  125  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA  172
            TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP 
Sbjct  132  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG  179


>gi|289753636|ref|ZP_06513014.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis EAS054]
 gi|289694223|gb|EFD61652.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis EAS054]
Length=647

 Score =  354 bits (908),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)

Query  5    PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  64
            PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct  12   PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  71

Query  65   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  124
            NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct  72   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  131

Query  125  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA  172
            TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP 
Sbjct  132  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG  179


>gi|289447160|ref|ZP_06436904.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CPHL_A]
 gi|339631620|ref|YP_004723262.1| hypothetical protein MAF_15760 [Mycobacterium africanum GM041182]
 gi|289420118|gb|EFD17319.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CPHL_A]
 gi|339330976|emb|CCC26648.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=647

 Score =  354 bits (908),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)

Query  5    PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  64
            PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct  12   PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  71

Query  65   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  124
            NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct  72   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  131

Query  125  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA  172
            TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP 
Sbjct  132  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG  179


>gi|289574233|ref|ZP_06454460.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis K85]
 gi|289538664|gb|EFD43242.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis K85]
Length=647

 Score =  352 bits (904),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 166/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)

Query  5    PCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  64
            PCFRVLRLWTYAHRCDLGHTDPLSRRT+MTTTERPTTMCEAFQRTAVMDPDAVALRTPGG
Sbjct  12   PCFRVLRLWTYAHRCDLGHTDPLSRRTKMTTTERPTTMCEAFQRTAVMDPDAVALRTPGG  71

Query  65   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  124
            NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN
Sbjct  72   NQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSFSVYN  131

Query  125  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPA  172
            TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP 
Sbjct  132  TLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPPG  179


>gi|340626570|ref|YP_004745022.1| putative fatty-acid-coa ligase fadd11 [Mycobacterium canettii 
CIPT 140010059]
 gi|340004760|emb|CCC43904.1| putative fatty-acid-coa ligase fadd11 (fatty-acid-CoA synthetase) 
(fatty-acid-CoA synthase) [Mycobacterium canettii CIPT 
140010059]
Length=640

 Score =  347 bits (891),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 167/171 (98%), Positives = 168/171 (99%), Gaps = 0/171 (0%)

Query  1    VVAAPCFRVLRLWTYAHRCDLGHTDPLSRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR  60
            +VAAPCFRVLRL TYAHRCDLGHTDPL RRTEMTTTERPTTMCEAFQRTAVMDPDAVALR
Sbjct  1    MVAAPCFRVLRLSTYAHRCDLGHTDPLPRRTEMTTTERPTTMCEAFQRTAVMDPDAVALR  60

Query  61   TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF  120
            TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF
Sbjct  61   TPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMANRIEFYPLDVGAQHVGATSF  120

Query  121  SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDGAPP  171
            SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVD APP
Sbjct  121  SVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIEHIVCVDCAPP  171


>gi|254550568|ref|ZP_05141015.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|294996515|ref|ZP_06802206.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis 210]
 gi|297634117|ref|ZP_06951897.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis KZN 4207]
 gi|313658436|ref|ZP_07815316.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis KZN V2475]
 gi|323719997|gb|EGB29109.1| fatty-acid-CoA ligase fadD11_1 [Mycobacterium tuberculosis CDC1551A]
 gi|339294523|gb|AEJ46634.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CCDC5079]
 gi|339298159|gb|AEJ50269.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis CCDC5180]
Length=143

 Score =  294 bits (752),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG
Sbjct  1    MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR
Sbjct  61   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  120

Query  153  VRASGVPIEHIVCVDGAPPARSR  175
            VRASGVPIEHIVCVDGAPPARSR
Sbjct  121  VRASGVPIEHIVCVDGAPPARSR  143


>gi|289750116|ref|ZP_06509494.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis T92]
 gi|289690703|gb|EFD58132.1| fatty-acid-CoA ligase fadD11 [Mycobacterium tuberculosis T92]
Length=608

 Score =  290 bits (743),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG
Sbjct  1    MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR
Sbjct  61   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  120

Query  153  VRASGVPIEHIVCVDGAPP  171
            VRASGVPIEHIVCVDGAPP
Sbjct  121  VRASGVPIEHIVCVDGAPP  139


>gi|297731104|ref|ZP_06960222.1| fatty-acid-CoA ligase [Mycobacterium tuberculosis KZN R506]
Length=134

 Score =  276 bits (706),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)

Query  42   MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN  101
            MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN
Sbjct  1    MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN  60

Query  102  RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE  161
            RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE
Sbjct  61   RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE  120

Query  162  HIVCVDGAPPARSR  175
            HIVCVDGAPPARSR
Sbjct  121  HIVCVDGAPPARSR  134


>gi|289443003|ref|ZP_06432747.1| possible fatty-acid-coa ligase fadd11 [Mycobacterium tuberculosis 
T46]
 gi|289415922|gb|EFD13162.1| possible fatty-acid-coa ligase fadd11 [Mycobacterium tuberculosis 
T46]
Length=599

 Score =  273 bits (698),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  42   MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN  101
            MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN
Sbjct  1    MCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMAN  60

Query  102  RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE  161
            RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE
Sbjct  61   RIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPIE  120

Query  162  HIVCVDGAPP  171
            HIVCVDGAPP
Sbjct  121  HIVCVDGAPP  130


>gi|240167941|ref|ZP_04746600.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium kansasii ATCC 12478]
Length=614

 Score =  257 bits (656),  Expect = 5e-67, Method: Compositional matrix adjust.
 Identities = 120/138 (87%), Positives = 131/138 (95%), Gaps = 0/138 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MTTTERP TMC+AFQRTA +DPDAVALRTPGG +T+TWR+YA QVR VAAGLAGLGV RG
Sbjct  1    MTTTERPATMCQAFQRTAAIDPDAVALRTPGGARTLTWREYADQVRHVAAGLAGLGVGRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANRIEFYPL+VGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVV+CE+QYVDR
Sbjct  61   DTVSLMMANRIEFYPLEVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVLCEEQYVDR  120

Query  153  VRASGVPIEHIVCVDGAP  170
            +RASG PI+HIVC+DGAP
Sbjct  121  IRASGAPIDHIVCIDGAP  138


>gi|254775671|ref|ZP_05217187.1| putative acyl-CoA dehydrogenase [Mycobacterium avium subsp. avium 
ATCC 25291]
Length=606

 Score =  253 bits (647),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 115/137 (84%), Positives = 126/137 (92%), Gaps = 0/137 (0%)

Query  35   TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT  94
            T ERP T+CEAFQR A +DPDAV LRTPG NQT+TWR+ A QVR+VAAGLAGLGVRRGDT
Sbjct  2    TAERPATLCEAFQRNAAIDPDAVVLRTPGANQTLTWRELAEQVRKVAAGLAGLGVRRGDT  61

Query  95   VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR  154
            VSLMMANRIEFYPL +GAQH+GATSFSVYNTLPAEQLTY+FDNAGTKV ICEQQYVDR+R
Sbjct  62   VSLMMANRIEFYPLAIGAQHLGATSFSVYNTLPAEQLTYLFDNAGTKVAICEQQYVDRIR  121

Query  155  ASGVPIEHIVCVDGAPP  171
            ASG P+EHIVC+DGAPP
Sbjct  122  ASGAPVEHIVCIDGAPP  138


>gi|118464822|ref|YP_882403.1| acyl-CoA dehydrogenase [Mycobacterium avium 104]
 gi|118166109|gb|ABK67006.1| putative acyl-CoA dehydrogenase [Mycobacterium avium 104]
Length=606

 Score =  252 bits (644),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 114/137 (84%), Positives = 126/137 (92%), Gaps = 0/137 (0%)

Query  35   TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT  94
            T ERP T+CEAFQR A +DPDAV LRTPG  QT+TWR+ A QVR+VAAGLAGLGVRRGDT
Sbjct  2    TAERPATLCEAFQRNAAIDPDAVVLRTPGATQTLTWRELAEQVRKVAAGLAGLGVRRGDT  61

Query  95   VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR  154
            VSLMMANRIEFYPL++GAQH+GATSFSVYNTLPAEQLTY+FDNAGTKV ICEQQYVDR+R
Sbjct  62   VSLMMANRIEFYPLEIGAQHLGATSFSVYNTLPAEQLTYLFDNAGTKVAICEQQYVDRIR  121

Query  155  ASGVPIEHIVCVDGAPP  171
            ASG P+EHIVC+DGAPP
Sbjct  122  ASGAPVEHIVCIDGAPP  138


>gi|41407358|ref|NP_960194.1| FadD11_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395710|gb|AAS03577.1| FadD11_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457910|gb|EGO36901.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=606

 Score =  250 bits (639),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 113/137 (83%), Positives = 125/137 (92%), Gaps = 0/137 (0%)

Query  35   TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT  94
            T ERP T+CEAFQR A +DPDAV LRTPG  QT+TWR+ A QVR+ AAGLAGLGVRRGDT
Sbjct  2    TAERPATLCEAFQRNAAIDPDAVVLRTPGATQTLTWRELAEQVRKFAAGLAGLGVRRGDT  61

Query  95   VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR  154
            VSLMMANRIEFYPL++GAQH+GATSFSVYNTLPAEQLTY+FDNAGTKV ICEQQYVDR+R
Sbjct  62   VSLMMANRIEFYPLEIGAQHLGATSFSVYNTLPAEQLTYLFDNAGTKVAICEQQYVDRIR  121

Query  155  ASGVPIEHIVCVDGAPP  171
            ASG P+EHIVC+DGAPP
Sbjct  122  ASGAPVEHIVCIDGAPP  138


>gi|254821477|ref|ZP_05226478.1| FadD11_1 [Mycobacterium intracellulare ATCC 13950]
Length=608

 Score =  249 bits (636),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 127/139 (92%), Gaps = 0/139 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MTT E P T+CEAFQRTA +DP+AVALRTPG  QT+TWR+ A QVR+VAAGLAGLGVRRG
Sbjct  1    MTTAEHPATLCEAFQRTAAIDPNAVALRTPGDTQTLTWRELATQVRKVAAGLAGLGVRRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANRIEFYP ++GAQH+GATSFSVY+TLPAEQLTY+FDNAGTKV ICE QYVDR
Sbjct  61   DTVSLMMANRIEFYPFEIGAQHLGATSFSVYSTLPAEQLTYLFDNAGTKVAICEAQYVDR  120

Query  153  VRASGVPIEHIVCVDGAPP  171
            +RASG PIEHIVC+DG+PP
Sbjct  121  IRASGAPIEHIVCIDGSPP  139


>gi|342860867|ref|ZP_08717517.1| acyl-CoA dehydrogenase [Mycobacterium colombiense CECT 3035]
 gi|342131891|gb|EGT85148.1| acyl-CoA dehydrogenase [Mycobacterium colombiense CECT 3035]
Length=608

 Score =  242 bits (617),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 111/139 (80%), Positives = 124/139 (90%), Gaps = 0/139 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MTT   P T+CEAFQR A ++PDAV LRTPG  QTMTWR+ A QVR+VAAGLAGLG+RRG
Sbjct  1    MTTPRDPATLCEAFQRNAAIEPDAVVLRTPGATQTMTWRECAEQVRKVAAGLAGLGIRRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            D VSLMMANRIEFYPL++GAQH+GATSFSVYNTLPAEQLTY+F NA TKV ICE+QYVDR
Sbjct  61   DAVSLMMANRIEFYPLEIGAQHLGATSFSVYNTLPAEQLTYLFGNADTKVAICEEQYVDR  120

Query  153  VRASGVPIEHIVCVDGAPP  171
            +RASGVPIEHIVC+DGAPP
Sbjct  121  IRASGVPIEHIVCIDGAPP  139


>gi|183982383|ref|YP_001850674.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium marinum M]
 gi|183175709|gb|ACC40819.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium marinum M]
Length=608

 Score =  240 bits (612),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 120/138 (87%), Positives = 131/138 (95%), Gaps = 0/138 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MT TERPTTMCEAFQR+A +DPDA+ALRTPGG QT+TWR+YA QVR+VA GLAGLGV RG
Sbjct  1    MTPTERPTTMCEAFQRSAAIDPDAIALRTPGGAQTLTWREYADQVRQVAGGLAGLGVGRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANR+EFYPL+VGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE+QYVDR
Sbjct  61   DTVSLMMANRVEFYPLEVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEEQYVDR  120

Query  153  VRASGVPIEHIVCVDGAP  170
            +RASG PIEHIVC+DGAP
Sbjct  121  IRASGAPIEHIVCIDGAP  138


>gi|118617196|ref|YP_905528.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium ulcerans Agy99]
 gi|118569306|gb|ABL04057.1| fatty-acid-CoA ligase, FadD11 [Mycobacterium ulcerans Agy99]
Length=608

 Score =  240 bits (612),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 120/138 (87%), Positives = 131/138 (95%), Gaps = 0/138 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MT TERPTTMCEAFQR+A +DPDA+ALRTPGG QT+TWR+YA QVR+VA GLAGLGV RG
Sbjct  1    MTPTERPTTMCEAFQRSAAIDPDAIALRTPGGAQTLTWREYADQVRQVAGGLAGLGVGRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANR+EFYPL+VGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE+QYVDR
Sbjct  61   DTVSLMMANRVEFYPLEVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEEQYVDR  120

Query  153  VRASGVPIEHIVCVDGAP  170
            +RASG PIEHIVC+DGAP
Sbjct  121  IRASGAPIEHIVCIDGAP  138


>gi|296164428|ref|ZP_06847002.1| possible long-chain-fatty-acid--CoA ligase [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900210|gb|EFG79642.1| possible long-chain-fatty-acid--CoA ligase [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=608

 Score =  238 bits (608),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 110/139 (80%), Positives = 124/139 (90%), Gaps = 0/139 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MTT ERP T+CEAFQRTA  DP AVALR+PG  QTMTW + AAQVRRV AGLAGLGV RG
Sbjct  1    MTTAERPVTLCEAFQRTASTDPGAVALRSPGDTQTMTWSELAAQVRRVTAGLAGLGVGRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANR+EFYP ++GAQH+GATSFSVYNTLPAEQLTY+F NA T+VVICE+QYV+R
Sbjct  61   DTVSLMMANRVEFYPFEIGAQHLGATSFSVYNTLPAEQLTYLFANADTRVVICEEQYVER  120

Query  153  VRASGVPIEHIVCVDGAPP  171
            +RASG PIEHIVC+DG+PP
Sbjct  121  IRASGAPIEHIVCIDGSPP  139


>gi|333990813|ref|YP_004523427.1| fatty-acid-CoA ligase [Mycobacterium sp. JDM601]
 gi|333486781|gb|AEF36173.1| fatty-acid-CoA ligase FadD11 [Mycobacterium sp. JDM601]
Length=611

 Score =  228 bits (581),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 109/138 (79%), Positives = 120/138 (87%), Gaps = 0/138 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MT T   TT+CEAFQRTA  DPD VALRT GG QT+TWR+YAAQVR+VAAGLAGLGV RG
Sbjct  1    MTGTPPATTLCEAFQRTAATDPDGVALRTVGGGQTLTWREYAAQVRQVAAGLAGLGVCRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTVSLMMANRIEFYPL+VGAQH GATSFSVYNTLPAEQL + F NAGTKVVICEQ YV+ 
Sbjct  61   DTVSLMMANRIEFYPLEVGAQHAGATSFSVYNTLPAEQLGHQFGNAGTKVVICEQPYVET  120

Query  153  VRASGVPIEHIVCVDGAP  170
            +R+SG P+EHIVC+DG P
Sbjct  121  IRSSGAPVEHIVCIDGRP  138


>gi|333919895|ref|YP_004493476.1| fatty-acid-CoA ligase fadD11 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333482116|gb|AEF40676.1| Fatty-acid-CoA ligase fadD11 [Amycolicicoccus subflavus DQS3-9A1]
Length=599

 Score =  213 bits (541),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 93/132 (71%), Positives = 117/132 (89%), Gaps = 0/132 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            TT+C+AFQRTA++DP AVALRTPG   T+TW  YAAQVR ++AGLAGLG+ RGDTV+LMM
Sbjct  3    TTLCDAFQRTAIVDPHAVALRTPGDTATLTWGQYAAQVRDISAGLAGLGIGRGDTVALMM  62

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
            +NRIEFYP++VGAQHVGATSFSVYN+L AEQLTY+F+NAG ++V CE+QY++R++ASG P
Sbjct  63   SNRIEFYPIEVGAQHVGATSFSVYNSLAAEQLTYIFNNAGNRIVFCEEQYIERIQASGAP  122

Query  160  IEHIVCVDGAPP  171
            I+HIVC+D   P
Sbjct  123  IDHIVCIDADVP  134


>gi|111024068|ref|YP_707040.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
 gi|110823598|gb|ABG98882.1| probable long-chain-fatty-acid--CoA ligase [Rhodococcus jostii 
RHA1]
Length=613

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 93/135 (69%), Positives = 109/135 (81%), Gaps = 0/135 (0%)

Query  33   MTTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRG  92
            MT  E P T+C AFQRTA +DPDA+ALRT G  QT+TWR Y++QVR VAAG A LGVRRG
Sbjct  1    MTIEEAPHTLCAAFQRTAAIDPDAIALRTVGDAQTLTWRQYSSQVRDVAAGFAALGVRRG  60

Query  93   DTVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR  152
            DTV+LMMANR+EFYP+DVGAQHVGATSFS+YNTLPA  + YV  NA  KVV+CE QYV+R
Sbjct  61   DTVALMMANRVEFYPIDVGAQHVGATSFSIYNTLPASAIAYVLGNAEAKVVVCEAQYVER  120

Query  153  VRASGVPIEHIVCVD  167
            +R SG  +E IV +D
Sbjct  121  IRESGAQVEQIVVID  135


>gi|333918846|ref|YP_004492427.1| fatty-acid-CoA ligase, FadD11 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333481067|gb|AEF39627.1| Fatty-acid-CoA ligase, FadD11 [Amycolicicoccus subflavus DQS3-9A1]
Length=609

 Score =  191 bits (486),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 85/134 (64%), Positives = 112/134 (84%), Gaps = 0/134 (0%)

Query  35   TTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDT  94
            T+  PTT+CEAFQRTAV+ P+A+ALRTPG  Q++TW+DY+  V +VAAGL+  G+ RGDT
Sbjct  2    TSPVPTTLCEAFQRTAVIAPEAIALRTPGDRQSITWKDYSTDVEKVAAGLSARGIGRGDT  61

Query  95   VSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR  154
            V++MM+NR+EFYP++VGAQHVGATSFSVYNTL  EQL+YVF NAG  +VICE Q+ +R+ 
Sbjct  62   VAIMMSNRVEFYPVEVGAQHVGATSFSVYNTLAPEQLSYVFTNAGICMVICEAQFAERIH  121

Query  155  ASGVPIEHIVCVDG  168
            +SGV +E IV ++G
Sbjct  122  SSGVALEQIVVLEG  135


>gi|229489202|ref|ZP_04383068.1| FadD11_2 [Rhodococcus erythropolis SK121]
 gi|229324706|gb|EEN90461.1| FadD11_2 [Rhodococcus erythropolis SK121]
Length=600

 Score =  175 bits (444),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 82/134 (62%), Positives = 102/134 (77%), Gaps = 0/134 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            TT+C AFQR + + PDAVALR  G  +T+TWR Y  QVR VAAGLAG+GV  GDTV+LMM
Sbjct  2    TTLCAAFQRVSAVAPDAVALRDIGDARTLTWRAYGEQVRDVAAGLAGIGVGHGDTVALMM  61

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
            +NRIEFYP+DVGAQH+GATSFS+YNT   E + Y+  N+G +V++CE QYVD VR SG  
Sbjct  62   SNRIEFYPIDVGAQHLGATSFSIYNTSAPEAIQYILANSGARVLVCEAQYVDTVRRSGAT  121

Query  160  IEHIVCVDGAPPAR  173
            ++ IV VD  P A+
Sbjct  122  LDTIVVVDAQPSAQ  135


>gi|300789064|ref|YP_003769355.1| acyl-CoA synthetase-related protein [Amycolatopsis mediterranei 
U32]
 gi|299798578|gb|ADJ48953.1| acyl-CoA synthetase-related protein [Amycolatopsis mediterranei 
U32]
Length=426

 Score =  175 bits (443),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 79/130 (61%), Positives = 101/130 (78%), Gaps = 0/130 (0%)

Query  39   PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM  98
            P T+CEAFQR A ++PDAVA+RT G  Q ++WR    QVR +AAGLAGLGVRRGD V+LM
Sbjct  24   PATLCEAFQRIATVEPDAVAIRTVGATQELSWRKLGEQVRFLAAGLAGLGVRRGDAVALM  83

Query  99   MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGV  158
            MANRIEFYP+D+ AQH+GA  FSVYNTL A Q+  +  N+   VV+CE+++V+ +R SG 
Sbjct  84   MANRIEFYPVDLAAQHLGAIPFSVYNTLAASQIGQLLRNSECTVVVCEERFVEIIRESGA  143

Query  159  PIEHIVCVDG  168
            PIEH++ VDG
Sbjct  144  PIEHVIVVDG  153


>gi|340530696|gb|AEK45901.1| acyl-CoA synthetase-related protein [Amycolatopsis mediterranei 
S699]
Length=414

 Score =  174 bits (442),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 79/130 (61%), Positives = 101/130 (78%), Gaps = 0/130 (0%)

Query  39   PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM  98
            P T+CEAFQR A ++PDAVA+RT G  Q ++WR    QVR +AAGLAGLGVRRGD V+LM
Sbjct  12   PATLCEAFQRIATVEPDAVAIRTVGATQELSWRKLGEQVRFLAAGLAGLGVRRGDAVALM  71

Query  99   MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGV  158
            MANRIEFYP+D+ AQH+GA  FSVYNTL A Q+  +  N+   VV+CE+++V+ +R SG 
Sbjct  72   MANRIEFYPVDLAAQHLGAIPFSVYNTLAASQIGQLLRNSECTVVVCEERFVEIIRESGA  131

Query  159  PIEHIVCVDG  168
            PIEH++ VDG
Sbjct  132  PIEHVIVVDG  141


>gi|226308155|ref|YP_002768115.1| fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
 gi|226187272|dbj|BAH35376.1| putative fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
Length=600

 Score =  174 bits (441),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 81/128 (64%), Positives = 101/128 (79%), Gaps = 0/128 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            TT+C AFQR + + PDAVALR  G  +T+TWR+YA QVR VAAGLAG+GV  GDTV+LMM
Sbjct  2    TTLCAAFQRVSAVAPDAVALRDIGDARTLTWREYAEQVREVAAGLAGIGVGHGDTVALMM  61

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
            +NRIEFYP+DVGAQH+GATSFS+YNT   E + Y+  N+G +V++CE +YVD VR SG  
Sbjct  62   SNRIEFYPIDVGAQHLGATSFSIYNTSAPEAIRYILANSGARVLVCEDRYVDTVRRSGAT  121

Query  160  IEHIVCVD  167
            +E IV VD
Sbjct  122  LETIVVVD  129


>gi|169628953|ref|YP_001702602.1| fatty-acid-CoA ligase FadD [Mycobacterium abscessus ATCC 19977]
 gi|169240920|emb|CAM61948.1| Probable fatty-acid-CoA ligase FadD [Mycobacterium abscessus]
Length=584

 Score =  161 bits (408),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 80/135 (60%), Positives = 96/135 (72%), Gaps = 3/135 (2%)

Query  39   PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM  98
            P T+C AFQRTA   PD VALRT GG   +TWR Y  +VR +A+GLAGLGV  GDTV+LM
Sbjct  4    PATLCAAFQRTAAQHPDRVALRTVGGGVVITWRQYRERVREIASGLAGLGVGPGDTVALM  63

Query  99   MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS--  156
            + NR EF+  D    H GAT FSVYNT P E L Y FDNA  +VVICEQQ++ +VR++  
Sbjct  64   LTNRPEFHLCDTAVLHCGATPFSVYNTNPPELLGYQFDNADNRVVICEQQFLPQVRSAVG  123

Query  157  -GVPIEHIVCVDGAP  170
             G  +EHI+CVDGAP
Sbjct  124  LGGKVEHIICVDGAP  138


>gi|336457474|gb|EGO36483.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=606

 Score =  158 bits (399),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%)

Query  38   RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL  97
            RPTT+CEAFQ TA   PDAVALRT G   T+TWR Y  +VR +AAGLAGLGV  GDTV+L
Sbjct  8    RPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVAL  67

Query  98   MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS-  156
            MM+NR EF+  D    H GAT FSVYNT P E L Y FDNA   VVICE  ++ +V A+ 
Sbjct  68   MMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFLPQVLAAA  127

Query  157  --GVPIEHIVCVDGA  169
              G  +EH+VCVDGA
Sbjct  128  QQGGTVEHVVCVDGA  142


>gi|254775190|ref|ZP_05216706.1| FadD11_2 [Mycobacterium avium subsp. avium ATCC 25291]
Length=606

 Score =  158 bits (399),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%)

Query  38   RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL  97
            RPTT+CEAFQ TA   PDAVALRT G   T+TWR Y  +VR +AAGLAGLGV  GDTV+L
Sbjct  8    RPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVAL  67

Query  98   MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS-  156
            MM+NR EF+  D    H GAT FSVYNT P E L Y FDNA   VVICE  ++ +V A+ 
Sbjct  68   MMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFLPQVLAAA  127

Query  157  --GVPIEHIVCVDGA  169
              G  +EH+VCVDGA
Sbjct  128  QQGGTVEHVVCVDGA  142


>gi|41407807|ref|NP_960643.1| FadD11_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396161|gb|AAS04026.1| FadD11_2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=606

 Score =  158 bits (399),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%)

Query  38   RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL  97
            RPTT+CEAFQ TA   PDAVALRT G   T+TWR Y  +VR +AAGLAGLGV  GDTV+L
Sbjct  8    RPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVAL  67

Query  98   MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS-  156
            MM+NR EF+  D    H GAT FSVYNT P E L Y FDNA   VVICE  ++ +V A+ 
Sbjct  68   MMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFMPQVLAAA  127

Query  157  --GVPIEHIVCVDGA  169
              G  +EH+VCVDGA
Sbjct  128  QQGGTVEHVVCVDGA  142


>gi|226304297|ref|YP_002764255.1| fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
 gi|226183412|dbj|BAH31516.1| putative fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
Length=615

 Score =  147 bits (371),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 65/128 (51%), Positives = 93/128 (73%), Gaps = 0/128 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
             T+CE FQRTA  +P+AVALRT GG+  +TWR+YA +VR ++ GLA LG+R GD V LMM
Sbjct  12   NTLCEEFQRTAKSNPEAVALRTVGGSHQITWREYAGRVRDISTGLAALGIRHGDAVGLMM  71

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
            +NR EF  +D    H+GA  +S+YN+  AEQ+ ++  N+ +KVV+CE ++VD +RA+G  
Sbjct  72   SNRPEFNLVDTAILHLGAVPYSIYNSNSAEQIAHLLSNSESKVVLCENRFVDTIRAAGGQ  131

Query  160  IEHIVCVD  167
            +E IV +D
Sbjct  132  LESIVVID  139


>gi|333920308|ref|YP_004493889.1| hypothetical protein AS9A_2642 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333482529|gb|AEF41089.1| hypothetical protein AS9A_2642 [Amycolicicoccus subflavus DQS3-9A1]
Length=592

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 68/134 (51%), Positives = 91/134 (68%), Gaps = 2/134 (1%)

Query  36   TERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTV  95
            T    T+C AFQ      P   A+RT  G+ ++TW+DY  +V+R+AAGLA LGV+ GDTV
Sbjct  3    TTNSETLCAAFQAQVARIPGKTAVRTADGSVSLTWQDYGRRVQRMAAGLAALGVKHGDTV  62

Query  96   SLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVR-  154
             +M+ NR EF+  D    H+GA +FSVYN+ PAEQ+ Y+F NA  +VVICE Q++D VR 
Sbjct  63   GMMLTNRPEFHIADTAILHLGAGAFSVYNSSPAEQIQYIFRNADNRVVICEPQFLDTVRQ  122

Query  155  -ASGVPIEHIVCVD  167
             + G  +EHIVCVD
Sbjct  123  ASEGTAVEHIVCVD  136


>gi|54024881|ref|YP_119123.1| putative acyl-CoA synthetase [Nocardia farcinica IFM 10152]
 gi|54016389|dbj|BAD57759.1| putative acyl-CoA synthetase [Nocardia farcinica IFM 10152]
Length=609

 Score =  140 bits (354),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 72/128 (57%), Positives = 96/128 (75%), Gaps = 0/128 (0%)

Query  41   TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA  100
            T+ EAFQ T  + PD VALRT GG   +TWR+Y  +VR +AAGLA LG++ GDT+ +M+ 
Sbjct  18   TVPEAFQETLTLRPDQVALRTVGGTTEITWREYGERVRALAAGLAALGLKHGDTMGIMLT  77

Query  101  NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVPI  160
            NR EF  +D  AQHVGAT FSVYNT  AEQ+T++F NAG K+V+ EQ ++D +RA+GV +
Sbjct  78   NRPEFNLIDTAAQHVGATPFSVYNTSSAEQITHLFGNAGNKIVVTEQAFLDVIRATGVAL  137

Query  161  EHIVCVDG  168
            +HI+ VDG
Sbjct  138  DHIIVVDG  145


>gi|111019699|ref|YP_702671.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
 gi|110819229|gb|ABG94513.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
Length=595

 Score =  140 bits (352),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 69/134 (52%), Positives = 95/134 (71%), Gaps = 3/134 (2%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
             T+CEAFQ TA    D VA+RT   + +MT+   A +VRRVAAGLA LG+ RGDTV +M+
Sbjct  22   NTVCEAFQITAAARADQVAVRTADDSVSMTFGTLAERVRRVAAGLAALGLERGDTVGIML  81

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR---VRAS  156
             NR EF+ +D+ A H+GA +FS+YNT   +Q+ Y+F +AG ++VI E+ +VDR   VR  
Sbjct  82   TNRPEFHLVDLAAMHLGALAFSIYNTSAHDQIEYLFADAGNRIVITERAFVDRLTAVRDG  141

Query  157  GVPIEHIVCVDGAP  170
            G PI+H++ VDGAP
Sbjct  142  GTPIDHLIVVDGAP  155


>gi|333918401|ref|YP_004491982.1| AMP-dependent synthetase and ligase [Amycolicicoccus subflavus 
DQS3-9A1]
 gi|333480622|gb|AEF39182.1| AMP-dependent synthetase and ligase [Amycolicicoccus subflavus 
DQS3-9A1]
Length=595

 Score =  136 bits (343),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 69/141 (49%), Positives = 92/141 (66%), Gaps = 6/141 (4%)

Query  34   TTTERPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGD  93
            T + +  T+CEAFQ T       +A+RTPGG  T+TW  Y  +VR +AA L  +GVR GD
Sbjct  4    TRSSQARTLCEAFQNTVRDYSSRIAVRTPGGATTLTWGQYGERVRAIAAQLHSIGVRHGD  63

Query  94   TVSLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQY----  149
            TV+LMM NR EF+ +D  AQH+GA  FS+YNT   +Q+ Y+F +A   VV+CE  +    
Sbjct  64   TVALMMTNRPEFHLVDTAAQHLGAIPFSIYNTSSPDQIRYLFGDAENAVVVCEAAFAPVL  123

Query  150  VDRVRASGVPIEHIVCVDGAP  170
            VD  R +GV  +HIVC+DGAP
Sbjct  124  VDGARGTGV--KHIVCIDGAP  142


>gi|158314759|ref|YP_001507267.1| AMP-dependent synthetase and ligase [Frankia sp. EAN1pec]
 gi|158110164|gb|ABW12361.1| AMP-dependent synthetase and ligase [Frankia sp. EAN1pec]
Length=773

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 66/133 (50%), Positives = 88/133 (67%), Gaps = 3/133 (2%)

Query  39   PTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLM  98
            P ++ EAFQR A  DP A+AL TP G+ T+TW  YA QVR +AA L   GVRRGD+V+LM
Sbjct  173  PASLAEAFQRNASRDPQALALSTPDGSATLTWGQYAEQVRDIAAALHAHGVRRGDSVALM  232

Query  99   MANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS--  156
            M NR EFYP+D  A H+GA  FS+YNT  AEQ+ ++F +A   +V C+  +   V  +  
Sbjct  233  MLNRPEFYPIDTAAIHLGAIPFSIYNTSSAEQIRWLFASAKPSMVFCDSSHAAAVLEAVD  292

Query  157  -GVPIEHIVCVDG  168
             G  ++ +VCVDG
Sbjct  293  GGTAVKAVVCVDG  305


>gi|111019695|ref|YP_702667.1| long-chain-fatty-acid--CoA ligase [Rhodococcus jostii RHA1]
 gi|110819225|gb|ABG94509.1| probable long-chain-fatty-acid--CoA ligase [Rhodococcus jostii 
RHA1]
Length=594

 Score =  134 bits (336),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 68/132 (52%), Positives = 91/132 (69%), Gaps = 3/132 (2%)

Query  41   TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA  100
            T+CEAFQ TA    D VALRT  G  ++T+   + +VRR+ AGLA LGVRRGDTV +M+ 
Sbjct  22   TLCEAFQITAAARADQVALRTVDGGVSLTFAALSERVRRLTAGLAALGVRRGDTVGIMLT  81

Query  101  NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDR---VRASG  157
            NR EF+ +D+ A H+GA  FS+YNT    Q+ Y+F +AG ++VI E+ +VDR   VR  G
Sbjct  82   NRPEFHIVDLAAMHLGALPFSIYNTSAHNQIEYLFGDAGNRIVITERAFVDRLVAVRDGG  141

Query  158  VPIEHIVCVDGA  169
             P++ IV VDGA
Sbjct  142  TPLDLIVVVDGA  153


>gi|240168703|ref|ZP_04747362.1| fatty-acid-CoA ligase [Mycobacterium kansasii ATCC 12478]
Length=612

 Score =  132 bits (333),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 62/128 (49%), Positives = 88/128 (69%), Gaps = 0/128 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            +T+ +AFQ+TA + PDAVA+RT G    +TWR YA +V+++AAGLA LGV+ G TV LM+
Sbjct  18   STLPQAFQQTAALKPDAVAIRTTGDAVVLTWRQYADRVQKIAAGLAALGVKHGHTVGLML  77

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
             NR EF+  D  A H+GA  FS+YNT   +Q+ Y+F NA   VV  E+ ++  +RA+G  
Sbjct  78   RNRPEFHLADTAAMHLGAIPFSIYNTSAPDQIRYLFTNAENAVVFTEKDFLPAIRAAGAN  137

Query  160  IEHIVCVD  167
            + H+V VD
Sbjct  138  LAHLVVVD  145


>gi|343928139|ref|ZP_08767595.1| putative fatty-acid--CoA ligase [Gordonia alkanivorans NBRC 16433]
 gi|343761939|dbj|GAA14521.1| putative fatty-acid--CoA ligase [Gordonia alkanivorans NBRC 16433]
Length=612

 Score =  130 bits (326),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 62/128 (49%), Positives = 86/128 (68%), Gaps = 0/128 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            +T+  AFQ+T  + PDAVA+RT GG Q +TW  YA +V  +A GLA LGV RGDTV +M+
Sbjct  18   STLPAAFQQTVTVRPDAVAIRTVGGIQQLTWSQYATRVEAIAGGLAALGVGRGDTVGIML  77

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
             NR EF+ +D  A H+GA  FS+YNT   +Q+ Y+F NA  ++VI EQ ++  + A+   
Sbjct  78   TNRPEFHLVDTAALHLGAVPFSIYNTSAPDQIEYLFGNAENRIVITEQVFLPVITAANTG  137

Query  160  IEHIVCVD  167
            +E IV VD
Sbjct  138  VERIVVVD  145


>gi|183983379|ref|YP_001851670.1| fatty-acid-CoA ligase [Mycobacterium marinum M]
 gi|183176705|gb|ACC41815.1| fatty-acid-CoA ligase [Mycobacterium marinum M]
Length=615

 Score =  128 bits (321),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 58/127 (46%), Positives = 86/127 (68%), Gaps = 0/127 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            +T+ +AFQ+TA + PD+VA+RT G    +TWR YA +VRR+AAGLA LGV RG TV +M+
Sbjct  18   STLPQAFQQTAAVAPDSVAIRTVGNQAVLTWRQYADRVRRIAAGLAALGVERGHTVGIML  77

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
             NR EF+ +D    H+GA  FS+YNT   +Q+ Y+F NA  KVV  E+ ++  + A+   
Sbjct  78   RNRPEFHLVDTAVLHLGAIPFSIYNTSAPDQIKYLFSNAENKVVFTEKDFLPAINAAVAD  137

Query  160  IEHIVCV  166
            + H++ +
Sbjct  138  LAHVIVI  144


>gi|262202830|ref|YP_003274038.1| AMP-dependent synthetase and ligase [Gordonia bronchialis DSM 
43247]
 gi|262086177|gb|ACY22145.1| AMP-dependent synthetase and ligase [Gordonia bronchialis DSM 
43247]
Length=610

 Score =  117 bits (293),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 66/129 (52%), Positives = 87/129 (68%), Gaps = 0/129 (0%)

Query  40   TTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMM  99
            +T+ EAF +T  + PDAVALRT GG Q +TW  YA +VR +AAGLA LGV  GDTV +M+
Sbjct  18   STLPEAFAQTVTVRPDAVALRTVGGIQEITWAQYAGRVRALAAGLAALGVGHGDTVGIML  77

Query  100  ANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP  159
             NR EF+ +D  A H+GA  FSVYNT   EQ+ Y+F NAG  VV+ EQ ++  +RA+   
Sbjct  78   TNRPEFHLIDTAALHLGAVPFSVYNTSSPEQIEYLFGNAGNTVVVTEQVFLPVIRAASTK  137

Query  160  IEHIVCVDG  168
            +   + VDG
Sbjct  138  VTSTIVVDG  146


>gi|226361926|ref|YP_002779704.1| fatty-acid--CoA ligase [Rhodococcus opacus B4]
 gi|226240411|dbj|BAH50759.1| putative fatty-acid--CoA ligase [Rhodococcus opacus B4]
Length=602

 Score =  108 bits (269),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 64/130 (50%), Positives = 88/130 (68%), Gaps = 1/130 (0%)

Query  41   TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA  100
            T+C AFQ T   +P++ ALR  G   ++T R YA  V  +A GLAGLGV RGDTV LMM 
Sbjct  20   TLCAAFQYTVTKNPESAALRAHGDATSLTRRGYADAVEAIAGGLAGLGVGRGDTVGLMMT  79

Query  101  NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRASGVP-  159
            NR EF+ +D  A H+GA  FS+YNT   +Q+ Y+  +A  +V+ICE+ ++DR+RA+  P 
Sbjct  80   NRPEFHLVDTAALHLGAIPFSIYNTSAPDQIEYLLGHAENRVMICERAFLDRIRAAATPH  139

Query  160  IEHIVCVDGA  169
            +EHIV +D A
Sbjct  140  LEHIVVIDPA  149


>gi|288922716|ref|ZP_06416888.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
 gi|288345935|gb|EFC80292.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
Length=607

 Score =  100 bits (248),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 51/133 (39%), Positives = 81/133 (61%), Gaps = 4/133 (3%)

Query  41   TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA  100
            T+ EAFQRTA    D +A R  GG   +TWR  A +VR  AAGLAG+G+R+GD +++++ 
Sbjct  22   TVPEAFQRTAHAQGDDIAFREIGGGAALTWRQTAGRVRDFAAGLAGIGLRKGDRLAILLP  81

Query  101  NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRA--SGV  158
            N IE + LD  A H+G   F+++N+   EQ+ +    AG  V++   +++ +V    + +
Sbjct  82   NTIECHLLDYAAMHLGVVPFTIFNSSSPEQVAHQVGTAGATVMVTSNRFLPKVEEALAQL  141

Query  159  P--IEHIVCVDGA  169
            P  I+H+V  D A
Sbjct  142  PRSIQHLVVSDAA  154


>gi|288919356|ref|ZP_06413690.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
 gi|288349245|gb|EFC83488.1| AMP-dependent synthetase and ligase [Frankia sp. EUN1f]
Length=615

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 50/141 (36%), Positives = 82/141 (59%), Gaps = 6/141 (4%)

Query  38   RPTTMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL  97
            +  T+ EAFQRT    PD V +RT GG   +TW ++  +VR +A  LA +G RRG+ V++
Sbjct  20   KAMTLPEAFQRTVATHPDKVGIRTIGGGVELTWAEFGDRVRSLAGSLAKIGCRRGERVAV  79

Query  98   MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS-  156
            +M N +E + +D    H+GA  F ++N+   +Q+ +   +A  ++V+ E +Y+D+V  + 
Sbjct  80   LMRNLVENHLVDYAFSHLGAVPFGIFNSSSLDQIVFQIGHAEAEIVVTEARYLDKVAQAV  139

Query  157  ---GVPIEHIVCV--DGAPPA  172
               G  + HIV    DG  PA
Sbjct  140  ARLGDQVRHIVVADPDGEGPA  160


>gi|284044961|ref|YP_003395301.1| AMP-dependent synthetase and ligase [Conexibacter woesei DSM 
14684]
 gi|283949182|gb|ADB51926.1| AMP-dependent synthetase and ligase [Conexibacter woesei DSM 
14684]
Length=607

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 54/131 (42%), Positives = 81/131 (62%), Gaps = 3/131 (2%)

Query  41   TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA  100
            T+ EA +RTA   PD VA+RT     ++TW +  A+V  +A GLA LGV RGD V+LM++
Sbjct  18   TLGEALRRTAAAHPDLVAVRTLDDALSLTWSELRARVDALAGGLARLGVGRGDNVALMLS  77

Query  101  NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRVRAS--GV  158
            NR EF+  D+    +GA  FS+Y T   EQ+ YV  +A  +V + EQ ++ R+  +   +
Sbjct  78   NRPEFHLADLAVVTLGAAPFSIYLTSSPEQIRYVVADAEARVAVVEQAFLGRLLEARREL  137

Query  159  P-IEHIVCVDG  168
            P + H++ VDG
Sbjct  138  PLLAHVIVVDG  148


>gi|319950300|ref|ZP_08024219.1| long-chain-fatty-acid--CoA ligase [Dietzia cinnamea P4]
 gi|319435992|gb|EFV91193.1| long-chain-fatty-acid--CoA ligase [Dietzia cinnamea P4]
Length=552

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 49/133 (37%), Positives = 72/133 (55%), Gaps = 3/133 (2%)

Query  41   TMCEAFQRTAVMDPDAVALRTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSLMMA  100
            T+ + F  TA   P  VALR+      +T+    A+V  +A  L  LGV  G+ V+LM+ 
Sbjct  21   TLADLFLATAAAHPGEVALRSHETGAEVTYAQARARVGAIAGTLRELGVAPGEPVALMLR  80

Query  101  NRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICEQQYVDRV---RASG  157
            NR EF+ +D     +GA  FS+YNT   +QL YV  +AG K ++ E  +V  +   R S 
Sbjct  81   NRPEFHLVDTAVMMLGAVPFSLYNTSAPDQLAYVLADAGVKTIVTESAFVGVLGAARGSA  140

Query  158  VPIEHIVCVDGAP  170
              +E +V VD +P
Sbjct  141  PAVERLVLVDESP  153


>gi|108805260|ref|YP_645197.1| AMP-dependent synthetase and ligase [Rubrobacter xylanophilus 
DSM 9941]
 gi|108766503|gb|ABG05385.1| AMP-dependent synthetase and ligase [Rubrobacter xylanophilus 
DSM 9941]
Length=612

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 46/135 (35%), Positives = 80/135 (60%), Gaps = 3/135 (2%)

Query  38   RPTTMCEAFQRTAVMDPDAVAL--RTPGGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTV  95
            R  ++ EAF+ T +   +  AL  +  G  +  ++R+   +V   A+GLAGLGV RG  V
Sbjct  20   RARSLPEAFRMTVLEKAEKPALGEKVGGRWREFSFREVYRRVEDFASGLAGLGVERGSRV  79

Query  96   SLMMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE-QQYVDRVR  154
            ++M ANR+ +   DV    +GA +  ++ TL   Q+ ++ +++G +VV+ E ++ +  VR
Sbjct  80   AIMSANRVGWTVADVAIMSLGAATVPIFPTLGPRQVAHILEDSGARVVVVEGERQLAAVR  139

Query  155  ASGVPIEHIVCVDGA  169
             SG  +EH+VC+D A
Sbjct  140  GSGASVEHLVCMDEA  154


>gi|163846661|ref|YP_001634705.1| AMP-dependent synthetase and ligase [Chloroflexus aurantiacus 
J-10-fl]
 gi|163667950|gb|ABY34316.1| AMP-dependent synthetase and ligase [Chloroflexus aurantiacus 
J-10-fl]
Length=649

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 47/117 (41%), Positives = 67/117 (58%), Gaps = 3/117 (2%)

Query  40   TTMCEAFQRTAVMDPDAVALRTP--GGNQTMTWRDYAAQVRRVAAGLAGLGVRRGDTVSL  97
            TT+     + A    D VALR    G  QT+TWR +A  VR  A GL  LGVRRGD +++
Sbjct  7    TTLPRLLFQNAERFGDKVALREKDYGIWQTVTWRQFADHVRAFAMGLHALGVRRGDVIAI  66

Query  98   MMANRIEFYPLDVGAQHVGATSFSVYNTLPAEQLTYVFDNAGTKVVICE-QQYVDRV  153
            +  NR E+   +  AQ +GA S  VY    AE++ Y+   AG +V++ E Q+ VD++
Sbjct  67   LGDNRPEWLYAEFAAQTIGAMSIGVYQDSVAEEVYYIVSAAGARVIVVEDQEQVDKI  123



Lambda     K      H
   0.323    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 145800812160


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40