BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1555
Length=125
Score E
Sequences producing significant alignments: (Bits) Value
gi|308377764|ref|ZP_07480325.2| putative 4Fe-4S binding domain p... 247 4e-64
gi|15608693|ref|NP_216071.1| fumarate reductase subunit D [Mycob... 244 3e-63
gi|340626575|ref|YP_004745027.1| putative fumarate reductase [me... 242 1e-62
gi|289761717|ref|ZP_06521095.1| fumarate reductase [membrane anc... 85.9 2e-15
gi|333920623|ref|YP_004494204.1| Fumarate reductase subunit D [A... 85.1 3e-15
gi|257092548|ref|YP_003166189.1| fumarate reductase subunit D [C... 78.6 3e-13
gi|332527675|ref|ZP_08403720.1| fumarate reductase subunit D [Ru... 70.5 8e-11
gi|34498821|ref|NP_903036.1| fumarate reductase subunit D [Chrom... 69.3 2e-10
gi|217977884|ref|YP_002362031.1| fumarate reductase subunit D [M... 66.2 1e-09
gi|119946887|ref|YP_944567.1| fumarate reductase, D subunit [Psy... 65.1 3e-09
gi|319943873|ref|ZP_08018154.1| fumarate reductase [Lautropia mi... 63.5 9e-09
gi|90407176|ref|ZP_01215364.1| fumarate reductase, 13 kDa hydrop... 62.4 2e-08
gi|254362606|ref|ZP_04978700.1| succinate dehydrogenase [Mannhei... 59.7 1e-07
gi|149909943|ref|ZP_01898592.1| putative fumarate reductase [Mor... 59.3 2e-07
gi|315633840|ref|ZP_07889129.1| fumarate reductase subunit D [Ag... 59.3 2e-07
gi|319775236|ref|YP_004137724.1| fumarate reductase subunit D [H... 59.3 2e-07
gi|145632191|ref|ZP_01787926.1| fumarate reductase subunit D [Ha... 58.9 2e-07
gi|68249427|ref|YP_248539.1| fumarate reductase subunit D [Haemo... 58.9 2e-07
gi|343509478|ref|ZP_08746750.1| fumarate reductase subunit D [Vi... 58.9 2e-07
gi|343508355|ref|ZP_08745698.1| fumarate reductase subunit D [Vi... 58.9 2e-07
gi|37681284|ref|NP_935893.1| fumarate reductase subunit D [Vibri... 58.5 3e-07
gi|27364667|ref|NP_760195.1| fumarate reductase subunit D [Vibri... 58.5 4e-07
gi|237809233|ref|YP_002893673.1| fumarate reductase D subunit [T... 57.8 5e-07
gi|323494458|ref|ZP_08099564.1| fumarate reductase subunit D [Vi... 57.8 5e-07
gi|16272773|ref|NP_438992.1| fumarate reductase subunit D [Haemo... 57.8 6e-07
gi|91228405|ref|ZP_01262331.1| fumarate reductase subunit D [Vib... 57.4 7e-07
gi|333955626|gb|EGL73364.1| fumarate reductase subunit D [Cronob... 57.4 7e-07
gi|260779590|ref|ZP_05888480.1| fumarate reductase subunit D [Vi... 57.4 7e-07
gi|260770858|ref|ZP_05879787.1| fumarate reductase subunit D [Vi... 57.4 7e-07
gi|317493554|ref|ZP_07951975.1| fumarate reductase subunit D pro... 57.4 8e-07
gi|336450981|ref|ZP_08621427.1| fumarate reductase subunit D [Id... 57.0 8e-07
gi|254508179|ref|ZP_05120304.1| fumarate reductase subunit D [Vi... 57.0 1e-06
gi|237729089|ref|ZP_04559570.1| FrdD [Citrobacter sp. 30_2] >gi|... 56.6 1e-06
gi|343498953|ref|ZP_08736958.1| fumarate reductase subunit D [Vi... 56.6 1e-06
gi|33358375|gb|AAQ16662.1| FrdD [Escherichia coli] 56.6 1e-06
gi|323498092|ref|ZP_08103096.1| fumarate reductase subunit D [Vi... 56.2 1e-06
gi|270264983|ref|ZP_06193246.1| fumarate reductase subunit D [Se... 56.2 2e-06
gi|195941146|ref|ZP_03086528.1| fumarate reductase subunit D [Es... 56.2 2e-06
gi|334704006|ref|ZP_08519872.1| fumarate reductase, 13 kDa hydro... 56.2 2e-06
gi|148828018|ref|YP_001292771.1| fumarate reductase subunit D [H... 56.2 2e-06
gi|331650280|ref|ZP_08351352.1| fumarate reductase subunit D (Fu... 56.2 2e-06
gi|332288835|ref|YP_004419687.1| fumarate reductase subunit D [G... 55.8 2e-06
gi|157368663|ref|YP_001476652.1| fumarate reductase subunit D [S... 55.8 2e-06
gi|28899617|ref|NP_799222.1| fumarate reductase subunit D [Vibri... 55.8 2e-06
gi|262393008|ref|YP_003284862.1| fumarate reductase subunit D [V... 55.8 2e-06
gi|269962495|ref|ZP_06176844.1| Fumarate reductase subunit D [Vi... 55.8 2e-06
gi|254285851|ref|ZP_04960813.1| fumarate reductase, 13 kDa hydro... 55.8 2e-06
gi|153834934|ref|ZP_01987601.1| fumarate reductase subunit D [Vi... 55.8 2e-06
gi|222035926|emb|CAP78671.1| Fumarate reductase subunit D [Esche... 55.8 2e-06
gi|74314641|ref|YP_313060.1| fumarate reductase subunit D [Shige... 55.8 2e-06
>gi|308377764|ref|ZP_07480325.2| putative 4Fe-4S binding domain protein [Mycobacterium tuberculosis
SUMu009]
gi|308354721|gb|EFP43572.1| putative 4Fe-4S binding domain protein [Mycobacterium tuberculosis
SUMu009]
Length=497
Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA
Sbjct 373 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 432
Query 61 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 120
MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW
Sbjct 433 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 492
Query 121 MLLTM 125
MLLTM
Sbjct 493 MLLTM 497
>gi|15608693|ref|NP_216071.1| fumarate reductase subunit D [Mycobacterium tuberculosis H37Rv]
gi|15841022|ref|NP_336059.1| fumarate reductase subunit D [Mycobacterium tuberculosis CDC1551]
gi|31792739|ref|NP_855232.1| fumarate reductase subunit D [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=125
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA
Sbjct 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
Query 61 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 120
MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW
Sbjct 61 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 120
Query 121 MLLTM 125
MLLTM
Sbjct 121 MLLTM 125
>gi|340626575|ref|YP_004745027.1| putative fumarate reductase [membrane anchor subunit] FRDD [Mycobacterium
canettii CIPT 140010059]
gi|340004765|emb|CCC43909.1| putative fumarate reductase [membrane anchor subunit] FRDD (FUMARATE
dehydrogenase) (fumaric hydrogenase) [Mycobacterium
canettii CIPT 140010059]
Length=125
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/125 (99%), Positives = 124/125 (99%), Gaps = 0/125 (0%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
MTPSTSDAR RRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA
Sbjct 1 MTPSTSDARPRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
Query 61 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 120
MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW
Sbjct 61 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 120
Query 121 MLLTM 125
MLLTM
Sbjct 121 MLLTM 125
>gi|289761717|ref|ZP_06521095.1| fumarate reductase [membrane anchor subunit] frdD [Mycobacterium
tuberculosis GM 1503]
gi|289709223|gb|EFD73239.1| fumarate reductase [membrane anchor subunit] frdD [Mycobacterium
tuberculosis GM 1503]
Length=126
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/97 (62%), Positives = 61/97 (63%), Gaps = 0/97 (0%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAF G P G
Sbjct 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFRSGGSTRPTTGTYWR 60
Query 61 MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLG 97
L+ HAAHRFRFVL G
Sbjct 61 WCATRSPSLLCWSWWYWPCSHAAHRFRFVLRPWAATG 97
>gi|333920623|ref|YP_004494204.1| Fumarate reductase subunit D [Amycolicicoccus subflavus DQS3-9A1]
gi|333482844|gb|AEF41404.1| Fumarate reductase subunit D [Amycolicicoccus subflavus DQS3-9A1]
Length=121
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/121 (46%), Positives = 78/121 (65%), Gaps = 1/121 (0%)
Query 5 TSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRN 64
T +RR EP WLLFSAGGM AL PVL+LLFG+ PLG + +P H HL +++ N
Sbjct 2 TLPVENRRARWEPIAWLLFSAGGMSAALFLPVLVLLFGVLAPLG-VVSPSHEHLYSVLSN 60
Query 65 PITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGWMLLT 124
P+T LV+ ++ L+ FH AHRFR ++ G +L VI++ CYG+A LG+ G ++L
Sbjct 61 PLTMLVLFGVLSLSAFHWAHRFRHIMSDGFRLRPLAGVISIACYGVAALGTVVIGAVILQ 120
Query 125 M 125
+
Sbjct 121 V 121
>gi|257092548|ref|YP_003166189.1| fumarate reductase subunit D [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257045072|gb|ACV34260.1| fumarate reductase D subunit [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length=123
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/129 (39%), Positives = 75/129 (59%), Gaps = 12/129 (9%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPD---HGH 57
M P+T +RS P W LF AGGM++AL+ P+L+ + G+A PLG + PD + H
Sbjct 1 MKPTT-----LKRSNAPIFWALFGAGGMLSALLGPMLVFITGIAVPLGVVLPPDTMSYPH 55
Query 58 LLAMVRNPITKLVVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAVLGSA 116
+LA +N I K + ++ L L+HAAHR F + D G+ G + L CYG A++G+
Sbjct 56 MLAFAKNFIGKGFIFAIIALFLWHAAHRIFHSLHDIGIHAGTGAK---LLCYGTAMVGTL 112
Query 117 TAGWMLLTM 125
A + LL +
Sbjct 113 IAAYALLAI 121
>gi|332527675|ref|ZP_08403720.1| fumarate reductase subunit D [Rubrivivax benzoatilyticus JA2]
gi|332112077|gb|EGJ12053.1| fumarate reductase subunit D [Rubrivivax benzoatilyticus JA2]
Length=118
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/118 (39%), Positives = 67/118 (57%), Gaps = 7/118 (5%)
Query 12 RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPD---HGHLLAMVRNPITK 68
+RS EP W LF AGG+++ALV P L+L+ G+ PL + +PD + H+ A V +P+ K
Sbjct 2 KRSHEPIFWSLFGAGGVLSALVGPALILITGVLAPLAIVLSPDALSYAHVHAFVLHPLGK 61
Query 69 LVVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGSATAGWMLLTM 125
L VL ++ L LFH HR L D G+ G A++ YG A +GS +L +
Sbjct 62 LAVLAVIALFLFHGCHRMLHSLHDLGVHAGHGA---AVFFYGFATVGSLVCAALLFAI 116
>gi|34498821|ref|NP_903036.1| fumarate reductase subunit D [Chromobacterium violaceum ATCC
12472]
gi|34104673|gb|AAQ61030.1| fumarate reductase, subunit D [Chromobacterium violaceum ATCC
12472]
Length=120
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/117 (41%), Positives = 65/117 (56%), Gaps = 6/117 (5%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI 66
R +RS P W LF AGGM+ AL P+L+ + G A PLGWL A + LA+ ++
Sbjct 4 RQLKRSHAPIFWGLFGAGGMLAALFGPMLVAITGFAAPLGWLPAKAASYQGALALAQSLT 63
Query 67 TKLVVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGSATAGWML 122
KLV+ L+ L L+HAAHR L D G+ G + + YG+A G+ A W+L
Sbjct 64 GKLVLWGLISLLLWHAAHRIYHSLHDVGVHGGPLAKAL---TYGVAAAGTLAAMWLL 117
>gi|217977884|ref|YP_002362031.1| fumarate reductase subunit D [Methylocella silvestris BL2]
gi|217503260|gb|ACK50669.1| fumarate reductase D subunit [Methylocella silvestris BL2]
Length=127
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/102 (44%), Positives = 55/102 (54%), Gaps = 5/102 (4%)
Query 13 RSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGW---LDAPDHGHLLAMVRNPITKL 69
RS P WLLF AGGM++AL P L++L G+ P GW D D H LA RNPI KL
Sbjct 12 RSVAPVFWLLFGAGGMLSALFGPALIILTGIMAPHGWGVPADFADFPHALAFARNPIGKL 71
Query 70 VVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMA 111
V+L ++ L +H A R L G V+ L YG+A
Sbjct 72 VLLAVISLFFWHGAERLFLTLKDMRVAGA--PVLRLATYGVA 111
>gi|119946887|ref|YP_944567.1| fumarate reductase, D subunit [Psychromonas ingrahamii 37]
gi|119865491|gb|ABM04968.1| fumarate reductase, D subunit [Psychromonas ingrahamii 37]
Length=125
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/125 (36%), Positives = 68/125 (55%), Gaps = 5/125 (4%)
Query 4 STSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPD--HGHLLAM 61
S + + RS EP W LF AGGM+TA + PV++L+ G+ PLG +D+ + + +
Sbjct 2 SNTTEKIYTRSHEPIFWGLFGAGGMLTAFLTPVMILITGILIPLGLIDSKNLSYEKVHHF 61
Query 62 VRNPITKLVVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW 120
+ +VLVLV L L+H HR + + D G++ GR + ++CYG A S
Sbjct 62 ATSWYGAAIVLVLVALPLWHTLHRIYHGLHDIGIKRGR--DLQQVFCYGFAFAVSVFVFT 119
Query 121 MLLTM 125
+LL M
Sbjct 120 LLLQM 124
>gi|319943873|ref|ZP_08018154.1| fumarate reductase [Lautropia mirabilis ATCC 51599]
gi|319743106|gb|EFV95512.1| fumarate reductase [Lautropia mirabilis ATCC 51599]
Length=127
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/129 (36%), Positives = 69/129 (54%), Gaps = 8/129 (6%)
Query 1 MTPS-TSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL---DAPDHG 56
MTPS T D +R+ EP +W LF AGG+++A+ P+L+L+ + PLG L +
Sbjct 1 MTPSHTVDEAPLKRTHEPIVWSLFGAGGVLSAMFGPMLILVTTILVPLGILLPTGTLSYA 60
Query 57 HLLAMVRNPITKLVVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGS 115
+LA + K+ +L +V L L+HA HR L D G G +++ CYG A + S
Sbjct 61 RVLAFAQWWPGKIAILAVVALFLYHAMHRLCHSLHDLGFHTGTGAQIV---CYGFATVMS 117
Query 116 ATAGWMLLT 124
+LLT
Sbjct 118 GVCAVLLLT 126
>gi|90407176|ref|ZP_01215364.1| fumarate reductase, 13 kDa hydrophobic protein [Psychromonas
sp. CNPT3]
gi|90311752|gb|EAS39849.1| fumarate reductase, 13 kDa hydrophobic protein [Psychromonas
sp. CNPT3]
Length=125
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/102 (39%), Positives = 59/102 (58%), Gaps = 5/102 (4%)
Query 13 RSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKLV 70
RS EP W LF AGGM+ A + PV++L+ GL P+G++D + +L + ++
Sbjct 11 RSHEPIFWGLFGAGGMLCAFLTPVMILITGLLIPMGYIDRSHFSYNNLHSFAGTWYGAII 70
Query 71 VLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMA 111
+LVLV L L+H HR F + D G++ GR + + CYG A
Sbjct 71 ILVLVALPLWHTLHRIFHGLHDLGVKRGR--DLQQVLCYGFA 110
>gi|254362606|ref|ZP_04978700.1| succinate dehydrogenase [Mannheimia haemolytica PHL213]
gi|261493896|ref|ZP_05990408.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495162|ref|ZP_05991626.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|110735327|gb|ABG89234.1| fumarate reductase [Mannheimia haemolytica]
gi|153094214|gb|EDN75096.1| succinate dehydrogenase [Mannheimia haemolytica PHL213]
gi|261309232|gb|EEY10471.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310498|gb|EEY11689.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length=115
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (41%), Positives = 54/87 (63%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WLLFSAGGMV+AL PV++ + GL P G L +PD ++++ I K
Sbjct 5 QNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG-LVSPD--NIISFAHTWIGK 61
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
L ++VL + ++ HR + HGL
Sbjct 62 LAIMVLAIFPMWAGMHR----IHHGLH 84
>gi|149909943|ref|ZP_01898592.1| putative fumarate reductase [Moritella sp. PE36]
gi|149806957|gb|EDM66916.1| putative fumarate reductase [Moritella sp. PE36]
Length=126
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (36%), Positives = 60/112 (54%), Gaps = 3/112 (2%)
Query 4 STSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGH--LLAM 61
S + + RS EP W LF AGGM+TA + PV+++L GL PLG +D + + L
Sbjct 2 SEMNKKIYVRSHEPVFWGLFGAGGMLTAFLTPVMIVLTGLLIPLGIIDQGNFNYQTLHGF 61
Query 62 VRNPITKLVVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAV 112
++LVLV L L+H HR F + D G++ GR + + + + AV
Sbjct 62 ATTWYGAGIILVLVALPLWHTLHRIFHALHDLGVKRGRDWQQVLSYGFAFAV 113
>gi|315633840|ref|ZP_07889129.1| fumarate reductase subunit D [Aggregatibacter segnis ATCC 33393]
gi|315477090|gb|EFU67833.1| fumarate reductase subunit D [Aggregatibacter segnis ATCC 33393]
Length=114
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (40%), Positives = 56/87 (65%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WL+FSAGGMV+AL PVL+L+ G P G + +P+ +++A + + K
Sbjct 4 QNPKRSNEPPVWLMFSAGGMVSALAFPVLILILGFLLPFG-IVSPE--NIIAFAHHWLGK 60
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
LV+LVL + ++ HR + HG+
Sbjct 61 LVILVLTIFPMWGGLHR----VHHGMH 83
>gi|319775236|ref|YP_004137724.1| fumarate reductase subunit D [Haemophilus influenzae F3047]
gi|319897674|ref|YP_004135871.1| fumarate reductase subunit d [Haemophilus influenzae F3031]
gi|329122839|ref|ZP_08251411.1| fumarate reductase subunit D [Haemophilus aegyptius ATCC 11116]
gi|317433180|emb|CBY81554.1| fumarate reductase subunit D [Haemophilus influenzae F3031]
gi|317449827|emb|CBY86035.1| fumarate reductase subunit D [Haemophilus influenzae F3047]
gi|327472103|gb|EGF17541.1| fumarate reductase subunit D [Haemophilus aegyptius ATCC 11116]
Length=114
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (38%), Positives = 53/87 (61%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WL+F AGG V+A+ PV++L+ GL P G +DA + L+ + I K
Sbjct 4 QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVDAHN---LITFAYSWIGK 60
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
LV+LVL + ++ HR + HG+
Sbjct 61 LVILVLTIFPMWCGLHR----IHHGMH 83
>gi|145632191|ref|ZP_01787926.1| fumarate reductase subunit D [Haemophilus influenzae 3655]
gi|145634756|ref|ZP_01790464.1| fumarate reductase subunit D [Haemophilus influenzae PittAA]
gi|145636607|ref|ZP_01792274.1| fumarate reductase subunit D [Haemophilus influenzae PittHH]
15 more sequence titles
Length=114
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (38%), Positives = 53/87 (61%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WL+F AGG V+A+ PV++L+ GL P G +DA + L+ + I K
Sbjct 4 QNPKRSGEPPVWLMFGAGGTVSAIFFPVVILIIGLLLPFGLVDAHN---LITFAYSWIGK 60
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
LV+LVL + ++ HR + HG+
Sbjct 61 LVILVLTIFPMWCGLHR----IHHGMH 83
>gi|68249427|ref|YP_248539.1| fumarate reductase subunit D [Haemophilus influenzae 86-028NP]
gi|260581649|ref|ZP_05849446.1| fumarate reductase subunit D [Haemophilus influenzae NT127]
gi|81336145|sp|Q4QM68.1|FRDD_HAEI8 RecName: Full=Fumarate reductase subunit D
gi|68057626|gb|AAX87879.1| fumarate reductase subunit D [Haemophilus influenzae 86-028NP]
gi|260095242|gb|EEW79133.1| fumarate reductase subunit D [Haemophilus influenzae NT127]
gi|301169551|emb|CBW29152.1| fumarate reductase (anaerobic), membrane anchor subunit [Haemophilus
influenzae 10810]
gi|309973676|gb|ADO96877.1| Fumarate reductase, subunit D [Haemophilus influenzae R2846]
Length=114
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (38%), Positives = 53/87 (61%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WL+F AGG V+A+ PV++L+ GL P G +DA + L+ + I K
Sbjct 4 QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVDAHN---LITFAYSWIGK 60
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
LV+LVL + ++ HR + HG+
Sbjct 61 LVILVLTIFPMWCGLHR----IHHGMH 83
>gi|343509478|ref|ZP_08746750.1| fumarate reductase subunit D [Vibrio scophthalmi LMG 19158]
gi|343515929|ref|ZP_08752977.1| fumarate reductase subunit D [Vibrio sp. N418]
gi|342797564|gb|EGU33212.1| fumarate reductase subunit D [Vibrio sp. N418]
gi|342804493|gb|EGU39810.1| fumarate reductase subunit D [Vibrio scophthalmi LMG 19158]
Length=125
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 63/122 (52%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
MTP+ S RRS EP W LF AGG A++ P+ +L+ G+ PLG +DA + +
Sbjct 1 MTPNFKVDHSPRRSDEPIWWSLFGAGGTWFAMITPITVLVLGILAPLGIIDAEALSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F +A + CY A L SA
Sbjct 61 SEFATSIIGALFIIGSLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|343508355|ref|ZP_08745698.1| fumarate reductase subunit D [Vibrio ichthyoenteri ATCC 700023]
gi|342793863|gb|EGU29647.1| fumarate reductase subunit D [Vibrio ichthyoenteri ATCC 700023]
Length=125
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 62/122 (51%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
MTP+ S RRS EP W LF AGG A++ P+ +L+ G+ PLG +DA +
Sbjct 1 MTPNYKVDHSPRRSDEPIWWSLFGAGGTWFAMITPITILVLGILAPLGIIDAEALSYERA 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F +A + CY A L SA
Sbjct 61 SEFATSIIGALFIIGSLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|37681284|ref|NP_935893.1| fumarate reductase subunit D [Vibrio vulnificus YJ016]
gi|320155062|ref|YP_004187441.1| fumarate reductase subunit D [Vibrio vulnificus MO6-24/O]
gi|71152056|sp|Q7MGX4.1|FRDD_VIBVY RecName: Full=Fumarate reductase subunit D
gi|37200035|dbj|BAC95864.1| fumarate reductase subunit D [Vibrio vulnificus YJ016]
gi|319930374|gb|ADV85238.1| fumarate reductase subunit D [Vibrio vulnificus MO6-24/O]
Length=125
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (32%), Positives = 66/122 (55%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ + R+ +RS EP W LF AGG A++ PV +L+ G+ P+G ++A + +
Sbjct 1 MKPNYNVDRAPKRSDEPVWWSLFGAGGTWFAMITPVTVLVLGILVPMGVINAEALSYDRV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
++ + I L ++ + L ++HA HR + HG+ +F V + CY +A L SA
Sbjct 61 VSFATSIIGALFIIATLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAIAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|27364667|ref|NP_760195.1| fumarate reductase subunit D [Vibrio vulnificus CMCP6]
gi|34582310|sp|Q8DCX4.1|FRDD_VIBVU RecName: Full=Fumarate reductase subunit D
gi|27360812|gb|AAO09722.1| Fumarate reductase subunit D [Vibrio vulnificus CMCP6]
Length=125
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (32%), Positives = 66/122 (55%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ + R+ +RS EP W LF AGG A++ PV +L+ G+ P+G ++A + +
Sbjct 1 MKPNYNVDRAPKRSDEPVWWSLFGAGGTWFAMITPVTVLVLGILVPMGVINAEALSYDRV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
++ + I L ++ + L ++HA HR + HG+ +F V + CY +A L SA
Sbjct 61 VSFATSIIGALFIIATLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAVAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|237809233|ref|YP_002893673.1| fumarate reductase D subunit [Tolumonas auensis DSM 9187]
gi|237501494|gb|ACQ94087.1| fumarate reductase D subunit [Tolumonas auensis DSM 9187]
Length=116
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/110 (38%), Positives = 62/110 (57%), Gaps = 6/110 (5%)
Query 12 RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL 69
+RS EP WLLF AGG+V A++ PVL+L+ GL PLG LDA + + A+ +
Sbjct 2 KRSDEPIYWLLFGAGGVVAAVLLPVLILISGLMVPLGILDADTLSYEKMHALATSWWGAP 61
Query 70 VVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAVLGSATA 118
++L ++ L ++HA HR + + D G+ +F + YG A L S A
Sbjct 62 ILLAVIALPIYHAMHRIYHGLHDLGIHPTKFLHYL---LYGFAFLVSVAA 108
>gi|323494458|ref|ZP_08099564.1| fumarate reductase subunit D [Vibrio brasiliensis LMG 20546]
gi|323311281|gb|EGA64439.1| fumarate reductase subunit D [Vibrio brasiliensis LMG 20546]
Length=125
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/122 (34%), Positives = 64/122 (53%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHL 58
M P+ S R+ +RS EP W LF AGG A++ P+ +L+ G+ PLG + DA + +
Sbjct 1 MKPNFSVDRAPKRSDEPIWWGLFGAGGTWFAMITPITILVLGVLVPLGVINADALSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA 116
+ + I L ++ + L ++HA HR + HG+ +F I + CY A L SA
Sbjct 61 VDFATSIIGALFIIATLALPMWHAMHR----VHHGMHDLKFHTGIVGKVACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|16272773|ref|NP_438992.1| fumarate reductase subunit D [Haemophilus influenzae Rd KW20]
gi|145628270|ref|ZP_01784071.1| fumarate reductase subunit D [Haemophilus influenzae 22.1-21]
gi|145630581|ref|ZP_01786361.1| fumarate reductase subunit D [Haemophilus influenzae R3021]
9 more sequence titles
Length=114
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/87 (37%), Positives = 52/87 (60%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WL+F AGG V+A+ PV++L+ GL P G +D + L+ + I K
Sbjct 4 QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVDVHN---LITFAYSWIGK 60
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
LV+LVL + ++ HR + HG+
Sbjct 61 LVILVLTIFPMWCGLHR----IHHGMH 83
>gi|91228405|ref|ZP_01262331.1| fumarate reductase subunit D [Vibrio alginolyticus 12G01]
gi|269966839|ref|ZP_06180912.1| Fumarate reductase subunit D [Vibrio alginolyticus 40B]
gi|91188046|gb|EAS74352.1| fumarate reductase subunit D [Vibrio alginolyticus 12G01]
gi|269828506|gb|EEZ82767.1| Fumarate reductase subunit D [Vibrio alginolyticus 40B]
Length=125
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/122 (33%), Positives = 63/122 (52%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S S +RS EP W LF AGG A++ P+ +L+ G+ PLG +DA + +
Sbjct 1 MKPNYSVNTSPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA 116
A + I L ++ + L ++HA HR + HG+ +F + + CY A L +A
Sbjct 61 SAFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVIGKIACYAFAGLITA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|333955626|gb|EGL73364.1| fumarate reductase subunit D [Cronobacter sakazakii E899]
Length=119
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/108 (36%), Positives = 60/108 (56%), Gaps = 7/108 (6%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI 66
R +RS EP W LF AGGM A++APV++LL G+ PLG DA + +LA ++ +
Sbjct 4 RHPKRSDEPVFWGLFGAGGMWCAIIAPVIILLVGILLPLGMAPEDAFSYERVLAFAQSWV 63
Query 67 TKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWC-YGMAVL 113
+L + +++VL L+ HR + HG+ + W YG+A +
Sbjct 64 GRLFLFLMIVLPLWCGLHR----IHHGMHDLKIHVPAGKWVFYGLAAI 107
>gi|260779590|ref|ZP_05888480.1| fumarate reductase subunit D [Vibrio coralliilyticus ATCC BAA-450]
gi|260604399|gb|EEX30703.1| fumarate reductase subunit D [Vibrio coralliilyticus ATCC BAA-450]
Length=125
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/120 (34%), Positives = 63/120 (53%), Gaps = 8/120 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S R+ +RS EP W LF AGG A++ PV +L+ G+ P+G +DA + +
Sbjct 1 MKPNFSIDRAPKRSDEPIWWSLFGAGGTWFAMITPVTVLILGILVPMGVIDAEAMSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSA 116
A + I L ++ + L ++HA HR + HG+ + +A + CY A L SA
Sbjct 61 TAFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKIHAGLAGKVGCYAFAGLISA 116
>gi|260770858|ref|ZP_05879787.1| fumarate reductase subunit D [Vibrio furnissii CIP 102972]
gi|260614095|gb|EEX39285.1| fumarate reductase subunit D [Vibrio furnissii CIP 102972]
gi|315178901|gb|ADT85815.1| fumarate reductase subunit D [Vibrio furnissii NCTC 11218]
Length=120
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/113 (36%), Positives = 61/113 (54%), Gaps = 8/113 (7%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPIT 67
+ +RS EP W LF AGG A++ PV +L+ G+ PLG +DA + + V + I
Sbjct 5 NPKRSDEPVWWGLFGAGGTWFAMITPVTILVLGILAPLGIIDADAMSYERVSGFVTSIIG 64
Query 68 KLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSATA 118
L V+ + L ++HA HR + HG+ +F +A + CYG A + SA A
Sbjct 65 ALFVIGTLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYGFATIISALA 113
>gi|317493554|ref|ZP_07951975.1| fumarate reductase subunit D protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918497|gb|EFV39835.1| fumarate reductase subunit D protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length=118
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/91 (37%), Positives = 54/91 (60%), Gaps = 2/91 (2%)
Query 7 DARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL-DAPDHGHLLAMVRNP 65
+ + +RS EP W LF AGGM A+VAPV++L+ G+ PLGW DA L+ +
Sbjct 2 NNKVYKRSDEPVFWGLFGAGGMWGAIVAPVVILIVGIMLPLGWFPDALTFERALSFSQTF 61
Query 66 ITKLVVLVLVVLALFHAAHRFRFVLDHGLQL 96
I ++ L++++L L+ HR ++ H L++
Sbjct 62 IGRIFWLLMIILPLWCGLHRLHHMM-HDLKI 91
>gi|336450981|ref|ZP_08621427.1| fumarate reductase subunit D [Idiomarina sp. A28L]
gi|336282237|gb|EGN75475.1| fumarate reductase subunit D [Idiomarina sp. A28L]
Length=123
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/129 (37%), Positives = 66/129 (52%), Gaps = 13/129 (10%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA 60
M + + +R + EP W LFSAGG+ A+ P ++L+FG+ PLG +D
Sbjct 1 MNANKTGSRWQGLHLEPLWWGLFSAGGVCFAVFIPAVVLIFGIMAPLGIIDISYQ----- 55
Query 61 MVRNPITKLVVLV----LVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSA 116
VR + L+ ++ L FHAAHR R L H ++LG V + CYG+A SA
Sbjct 56 QVRGYYASIWGLMFTGAVICLPAFHAAHRIRHGL-HDVKLGG-GLVSIIICYGLAATLSA 113
Query 117 T--AGWMLL 123
T A W LL
Sbjct 114 TTLAAWYLL 122
>gi|254508179|ref|ZP_05120304.1| fumarate reductase subunit D [Vibrio parahaemolyticus 16]
gi|219548901|gb|EED25901.1| fumarate reductase subunit D [Vibrio parahaemolyticus 16]
Length=125
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 63/122 (52%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHL 58
M P+ S R+ +RS EP W LF AGG A++ PV +L+ G+ PLG + DA + +
Sbjct 1 MKPNFSVDRAPKRSDEPIWWGLFGAGGTWFAMITPVTILVLGILVPLGVINADALSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F V + CY A L SA
Sbjct 61 SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKVACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|237729089|ref|ZP_04559570.1| FrdD [Citrobacter sp. 30_2]
gi|283834773|ref|ZP_06354514.1| fumarate reductase subunit D [Citrobacter youngae ATCC 29220]
gi|226908818|gb|EEH94736.1| FrdD [Citrobacter sp. 30_2]
gi|291069018|gb|EFE07127.1| fumarate reductase subunit D [Citrobacter youngae ATCC 29220]
Length=118
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (38%), Positives = 56/88 (64%), Gaps = 2/88 (2%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL-DAPDHGHLLAMVRNPITK 68
+ +RS EP W LF AGGM +A++APV++LL G+ PLG++ DA + +LA ++ I +
Sbjct 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGIMLPLGFVPDAFSYERVLAFAQSFIGR 64
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQL 96
+ +++VL L+ HR + H L++
Sbjct 65 AFLFLMIVLPLWCGLHRMHHAM-HDLKI 91
>gi|343498953|ref|ZP_08736958.1| fumarate reductase subunit D [Vibrio tubiashii ATCC 19109]
gi|342823592|gb|EGU58204.1| fumarate reductase subunit D [Vibrio tubiashii ATCC 19109]
Length=125
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (34%), Positives = 64/122 (53%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S R+ +RS EP W LF AGG A++ PV +L+ G+ PLG ++A + +
Sbjct 1 MKPNFSVDRAPKRSDEPIWWGLFGAGGTWFAMITPVTILVLGVLAPLGIINAETLSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
+ + I L ++ + L ++HA HR + HG+ +F V + CY A L SA
Sbjct 61 VDFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGLVGKIACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|33358375|gb|AAQ16662.1| FrdD [Escherichia coli]
Length=119
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 56/89 (63%), Gaps = 3/89 (3%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT 67
+ +RS EP W LF AGGM +A++APV++LL G+ PLG++ DA + +LA ++ I
Sbjct 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGIMLPLGFVPGDAFSYERVLAFAQSFIG 64
Query 68 KLVVLVLVVLALFHAAHRFRFVLDHGLQL 96
+ + +++VL L+ HR + H L++
Sbjct 65 RAYLFLMIVLPLWCGLHRMHHAM-HDLKI 92
>gi|323498092|ref|ZP_08103096.1| fumarate reductase subunit D [Vibrio sinaloensis DSM 21326]
gi|323316803|gb|EGA69810.1| fumarate reductase subunit D [Vibrio sinaloensis DSM 21326]
Length=125
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 63/122 (52%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLD--APDHGHL 58
M P+ S R+ +RS EP W LF AGG A++ PV +L+ G+ PLG +D A + +
Sbjct 1 MKPNYSVDRAPKRSDEPIWWGLFGAGGTWFAMITPVTILVLGVLAPLGVIDTEALSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F V + CY A L SA
Sbjct 61 SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKVACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|270264983|ref|ZP_06193246.1| fumarate reductase subunit D [Serratia odorifera 4Rx13]
gi|333925241|ref|YP_004498820.1| Fumarate reductase subunit D [Serratia sp. AS12]
gi|333930194|ref|YP_004503772.1| Fumarate reductase subunit D [Serratia sp. AS9]
gi|270040917|gb|EFA14018.1| fumarate reductase subunit D [Serratia odorifera 4Rx13]
gi|333471801|gb|AEF43511.1| Fumarate reductase subunit D [Serratia sp. AS9]
gi|333489301|gb|AEF48463.1| Fumarate reductase subunit D [Serratia sp. AS12]
gi|333959398|gb|AEG26171.1| Fumarate reductase subunit D [Serratia sp. AS13]
Length=119
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (40%), Positives = 50/81 (62%), Gaps = 2/81 (2%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI 66
++ +RS EP W LF AGGM A+VAP ++LL G+ PLG DA + +LA ++ I
Sbjct 4 QTPKRSDEPVFWGLFGAGGMWGAIVAPAIVLLVGILLPLGLFPGDALGYDRVLAFCQSLI 63
Query 67 TKLVVLVLVVLALFHAAHRFR 87
+L +L++++L L+ HR
Sbjct 64 GRLFLLLMIILPLWCGLHRIH 84
>gi|195941146|ref|ZP_03086528.1| fumarate reductase subunit D [Escherichia coli O157:H7 str. EC4024]
gi|334123794|ref|ZP_08497812.1| fumarate reductase subunit D [Enterobacter hormaechei ATCC 49162]
gi|306950625|gb|ADN07566.1| fumarate reductase subunit D [Enterobacter asburiae]
gi|333390119|gb|EGK61268.1| fumarate reductase subunit D [Enterobacter hormaechei ATCC 49162]
Length=119
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 54/89 (61%), Gaps = 3/89 (3%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT 67
+ +RS EP W LF AGGM +A++APV++LL G+ PLG DA + +LA + I
Sbjct 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVIILLVGIMLPLGLFPGDALSYERVLAFASSFIG 64
Query 68 KLVVLVLVVLALFHAAHRFRFVLDHGLQL 96
++ + +++VL L+ HR + H L++
Sbjct 65 RVFIFLMIVLPLWCGLHRIHHAM-HDLKI 92
>gi|334704006|ref|ZP_08519872.1| fumarate reductase, 13 kDa hydrophobic protein [Aeromonas caviae
Ae398]
Length=118
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/108 (37%), Positives = 58/108 (54%), Gaps = 6/108 (5%)
Query 12 RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL 69
RRS EP W LF AGGMV A++ PV++L+ GL P+G +D + +LA +
Sbjct 2 RRSDEPIYWGLFGAGGMVVAMLLPVIVLITGLLVPMGIMDVETMSYERVLAFASSWWGAC 61
Query 70 VVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGSA 116
++LV++ L ++H HR L D G+ + + YG A L SA
Sbjct 62 ILLVIIALPVWHGMHRIYHGLHDLGIHTTKLHHYV---FYGFAFLVSA 106
>gi|148828018|ref|YP_001292771.1| fumarate reductase subunit D [Haemophilus influenzae PittGG]
gi|166198771|sp|A5UHY2.1|FRDD_HAEIG RecName: Full=Fumarate reductase subunit D
gi|148719260|gb|ABR00388.1| fumarate reductase subunit D [Haemophilus influenzae PittGG]
Length=114
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 52/87 (60%), Gaps = 7/87 (8%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK 68
++ +RS EP +WL+F AGG V+A+ PV++L+ GL P G ++ + L+ + I K
Sbjct 4 QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVNVHN---LITFAYSWIGK 60
Query 69 LVVLVLVVLALFHAAHRFRFVLDHGLQ 95
LV+LVL + ++ HR + HG+
Sbjct 61 LVILVLTIFPMWCGLHR----IHHGMH 83
>gi|331650280|ref|ZP_08351352.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein)
[Escherichia coli M605]
gi|331040674|gb|EGI12832.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein)
[Escherichia coli M605]
Length=119
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 55/89 (62%), Gaps = 3/89 (3%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT 67
+ +RS EP W LF AGGM +A++APV++LL G+ PLG DA + +LA ++ I
Sbjct 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64
Query 68 KLVVLVLVVLALFHAAHRFRFVLDHGLQL 96
++ + +++VL L+ HR + H L++
Sbjct 65 RIFLFLMIVLPLWCGLHRMHHAM-HDLKI 92
>gi|332288835|ref|YP_004419687.1| fumarate reductase subunit D [Gallibacterium anatis UMN179]
gi|330431731|gb|AEC16790.1| fumarate reductase subunit D [Gallibacterium anatis UMN179]
Length=114
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/114 (36%), Positives = 61/114 (54%), Gaps = 16/114 (14%)
Query 7 DARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPI 66
+ + +RS EP +WLLF AGG ++A+ PVL+L+ G P G L +PD +++A I
Sbjct 2 NKETPKRSNEPVVWLLFGAGGAISAVFFPVLVLILGFLLPFG-LVSPD--NIIAFAHTWI 58
Query 67 TKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI-----ALWCYGMAVLGS 115
KL +LVL++ + HR + LG D + + YG+AVL S
Sbjct 59 GKLAILVLLIFPTWCGIHR--------IHLGLHDFKVHIPASGVIFYGLAVLYS 104
>gi|157368663|ref|YP_001476652.1| fumarate reductase subunit D [Serratia proteamaculans 568]
gi|166988474|sp|A8G8T4.1|FRDD_SERP5 RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|157320427|gb|ABV39524.1| fumarate reductase D subunit [Serratia proteamaculans 568]
Length=119
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (39%), Positives = 50/81 (62%), Gaps = 2/81 (2%)
Query 9 RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI 66
++ +RS EP W LF AGGM A++AP ++LL G+ PLG DA + +LA ++ I
Sbjct 4 QAPKRSDEPVFWGLFGAGGMWGAIIAPAIVLLVGILLPLGLFPGDALGYDRILAFCQSLI 63
Query 67 TKLVVLVLVVLALFHAAHRFR 87
+L +L++++L L+ HR
Sbjct 64 GRLFLLLMIILPLWCGLHRIH 84
>gi|28899617|ref|NP_799222.1| fumarate reductase subunit D [Vibrio parahaemolyticus RIMD 2210633]
gi|153837992|ref|ZP_01990659.1| fumarate reductase subunit D [Vibrio parahaemolyticus AQ3810]
gi|260361266|ref|ZP_05774374.1| fumarate reductase subunit D [Vibrio parahaemolyticus K5030]
11 more sequence titles
Length=125
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/122 (33%), Positives = 63/122 (52%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S S +RS EP W LF AGG A++ P+ +L+ G+ PLG +DA + +
Sbjct 1 MKPNYSVNTSPKRSDEPIWWGLFGAGGTWFAMLTPITVLVLGILVPLGVIDAEAMSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA 116
A + I L ++ + L ++HA HR + HG+ +F + + CY A L +A
Sbjct 61 SAFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVIGKVACYAFAGLITA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|262393008|ref|YP_003284862.1| fumarate reductase subunit D [Vibrio sp. Ex25]
gi|262336602|gb|ACY50397.1| fumarate reductase subunit D [Vibrio sp. Ex25]
Length=125
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/122 (32%), Positives = 62/122 (51%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S S +RS EP W LF AGG A++ P+ +L+ G+ PLG +DA + +
Sbjct 1 MKPNYSVNTSPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F + + CY A L +A
Sbjct 61 SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVIGKIACYAFAGLITA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|269962495|ref|ZP_06176844.1| Fumarate reductase subunit D [Vibrio harveyi 1DA3]
gi|269832791|gb|EEZ86901.1| Fumarate reductase subunit D [Vibrio harveyi 1DA3]
Length=125
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/122 (33%), Positives = 62/122 (51%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S + +RS EP W LF AGG A++ P+ +L+ G+ PLG +DA + +
Sbjct 1 MKPNYSVNTAPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F V + CY A L SA
Sbjct 61 SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|254285851|ref|ZP_04960813.1| fumarate reductase, 13 kDa hydrophobic protein [Vibrio cholerae
AM-19226]
gi|150424033|gb|EDN15972.1| fumarate reductase, 13 kDa hydrophobic protein [Vibrio cholerae
AM-19226]
Length=130
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/111 (34%), Positives = 60/111 (55%), Gaps = 8/111 (7%)
Query 12 RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL 69
+RS EP W LF AGG A++ P+ +L+ G+ PLG +DA + + + + I L
Sbjct 17 KRSDEPVWWSLFGAGGTWFAMITPITVLVLGILVPLGVIDAEALSYERVSSFATSIIGAL 76
Query 70 VVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSATA 118
++ + L ++HA HR + HG+ +F +A + CYG A + SA A
Sbjct 77 FIIGTLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYGFATIISALA 123
>gi|153834934|ref|ZP_01987601.1| fumarate reductase subunit D [Vibrio harveyi HY01]
gi|156972502|ref|YP_001443409.1| fumarate reductase subunit D [Vibrio harveyi ATCC BAA-1116]
gi|166198775|sp|A7MZ44.1|FRDD_VIBHB RecName: Full=Fumarate reductase subunit D
gi|148868614|gb|EDL67700.1| fumarate reductase subunit D [Vibrio harveyi HY01]
gi|156524096|gb|ABU69182.1| hypothetical protein VIBHAR_00134 [Vibrio harveyi ATCC BAA-1116]
Length=125
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/122 (33%), Positives = 62/122 (51%), Gaps = 8/122 (6%)
Query 1 MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL 58
M P+ S + +RS EP W LF AGG A++ P+ +L+ G+ PLG +DA + +
Sbjct 1 MKPNYSVNTAPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV 60
Query 59 LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA 116
+ I L ++ + L ++HA HR + HG+ +F V + CY A L SA
Sbjct 61 SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAFAGLISA 116
Query 117 TA 118
A
Sbjct 117 LA 118
>gi|222035926|emb|CAP78671.1| Fumarate reductase subunit D [Escherichia coli LF82]
Length=119
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 55/89 (62%), Gaps = 3/89 (3%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT 67
+ +RS EP W LF AGGM +A++APV++LL G+ PLG DA + +LA ++ I
Sbjct 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64
Query 68 KLVVLVLVVLALFHAAHRFRFVLDHGLQL 96
++ + +++VL L+ HR + H L++
Sbjct 65 RVFLFLMIVLPLWCGLHRMHHAM-HDLKI 92
>gi|74314641|ref|YP_313060.1| fumarate reductase subunit D [Shigella sonnei Ss046]
gi|82546603|ref|YP_410550.1| fumarate reductase subunit D [Shigella boydii Sb227]
gi|157158919|ref|YP_001465653.1| fumarate reductase subunit D [Escherichia coli E24377A]
79 more sequence titles
gi|157163619|ref|YP_001460937.1| fumarate reductase subunit D [Escherichia coli HS]
gi|191165648|ref|ZP_03027488.1| fumarate reductase, D subunit [Escherichia coli B7A]
gi|193065746|ref|ZP_03046810.1| fumarate reductase, D subunit [Escherichia coli E22]
gi|193067926|ref|ZP_03048892.1| fumarate reductase, D subunit [Escherichia coli E110019]
gi|194428941|ref|ZP_03061474.1| fumarate reductase, D subunit [Escherichia coli B171]
gi|209921644|ref|YP_002295728.1| fumarate reductase subunit D [Escherichia coli SE11]
gi|218556708|ref|YP_002389622.1| fumarate reductase subunit D [Escherichia coli IAI1]
gi|218697903|ref|YP_002405570.1| fumarate reductase subunit D [Escherichia coli 55989]
gi|260846986|ref|YP_003224764.1| fumarate reductase, membrane anchor subunit FrdD, anaerobic [Escherichia
coli O103:H2 str. 12009]
gi|260858307|ref|YP_003232198.1| fumarate reductase, membrane anchor subunit FrdD, anaerobic [Escherichia
coli O26:H11 str. 11368]
gi|260870938|ref|YP_003237340.1| fumarate reductase, membrane anchor subunit FrdD, anaerobic [Escherichia
coli O111:H- str. 11128]
gi|300816547|ref|ZP_07096768.1| fumarate reductase subunit D [Escherichia coli MS 107-1]
gi|300821247|ref|ZP_07101395.1| fumarate reductase subunit D [Escherichia coli MS 119-7]
gi|300905984|ref|ZP_07123708.1| fumarate reductase subunit D [Escherichia coli MS 84-1]
gi|300922439|ref|ZP_07138559.1| fumarate reductase subunit D [Escherichia coli MS 182-1]
gi|301302571|ref|ZP_07208701.1| fumarate reductase subunit D [Escherichia coli MS 124-1]
gi|301325918|ref|ZP_07219339.1| fumarate reductase subunit D [Escherichia coli MS 78-1]
gi|307312010|ref|ZP_07591647.1| fumarate reductase D subunit [Escherichia coli W]
gi|309796966|ref|ZP_07691366.1| fumarate reductase subunit D [Escherichia coli MS 145-7]
gi|312965829|ref|ZP_07780055.1| fumarate reductase subunit D [Escherichia coli 2362-75]
gi|331671061|ref|ZP_08371894.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein)
[Escherichia coli TA271]
gi|331680286|ref|ZP_08380945.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein)
[Escherichia coli H591]
gi|332280937|ref|ZP_08393350.1| fumarate reductase subunit D [Shigella sp. D9]
gi|123557906|sp|Q31T86.1|FRDD_SHIBS RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|123615516|sp|Q3YUI7.1|FRDD_SHISS RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|166988471|sp|A7ZV24.1|FRDD_ECO24 RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|166988472|sp|A8A7Q0.1|FRDD_ECOHS RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|226707045|sp|B7M8R6.1|FRDD_ECO8A RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|226707048|sp|B6I260.1|FRDD_ECOSE RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|254789463|sp|B7LC12.1|FRDD_ECO55 RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate
reductase 13 kDa hydrophobic protein
gi|73858118|gb|AAZ90825.1| fumarate reductase, anaerobic, membrane anchor polypeptide [Shigella
sonnei Ss046]
gi|81248014|gb|ABB68722.1| fumarate reductase, anaerobic, membrane anchor polypeptide [Shigella
boydii Sb227]
gi|157069299|gb|ABV08554.1| fumarate reductase, D subunit [Escherichia coli HS]
gi|157080949|gb|ABV20657.1| fumarate reductase, D subunit [Escherichia coli E24377A]
gi|190904343|gb|EDV64052.1| fumarate reductase, D subunit [Escherichia coli B7A]
gi|192926615|gb|EDV81245.1| fumarate reductase, D subunit [Escherichia coli E22]
gi|192958901|gb|EDV89338.1| fumarate reductase, D subunit [Escherichia coli E110019]
gi|194412994|gb|EDX29283.1| fumarate reductase, D subunit [Escherichia coli B171]
gi|209914903|dbj|BAG79977.1| fumarate reductase membrane anchor polypeptide [Escherichia coli
SE11]
gi|218354635|emb|CAV01612.1| fumarate reductase (anaerobic), membrane anchor subunit [Escherichia
coli 55989]
gi|218363477|emb|CAR01131.1| fumarate reductase (anaerobic), membrane anchor subunit [Escherichia
coli IAI1]
gi|257756956|dbj|BAI28458.1| fumarate reductase, membrane anchor subunit FrdD, anaerobic [Escherichia
coli O26:H11 str. 11368]
gi|257762133|dbj|BAI33630.1| fumarate reductase, membrane anchor subunit FrdD, anaerobic [Escherichia
coli O103:H2 str. 12009]
gi|257767294|dbj|BAI38789.1| fumarate reductase, membrane anchor subunit FrdD, anaerobic [Escherichia
coli O111:H- str. 11128]
gi|300402151|gb|EFJ85689.1| fumarate reductase subunit D [Escherichia coli MS 84-1]
gi|300421258|gb|EFK04569.1| fumarate reductase subunit D [Escherichia coli MS 182-1]
gi|300526136|gb|EFK47205.1| fumarate reductase subunit D [Escherichia coli MS 119-7]
gi|300530777|gb|EFK51839.1| fumarate reductase subunit D [Escherichia coli MS 107-1]
gi|300842096|gb|EFK69856.1| fumarate reductase subunit D [Escherichia coli MS 124-1]
gi|300847271|gb|EFK75031.1| fumarate reductase subunit D [Escherichia coli MS 78-1]
gi|306907817|gb|EFN38318.1| fumarate reductase D subunit [Escherichia coli W]
gi|308119379|gb|EFO56641.1| fumarate reductase subunit D [Escherichia coli MS 145-7]
gi|312289072|gb|EFR16966.1| fumarate reductase subunit D [Escherichia coli 2362-75]
gi|315063470|gb|ADT77797.1| fumarate reductase (anaerobic), membrane anchor subunit [Escherichia
coli W]
gi|315255498|gb|EFU35466.1| fumarate reductase subunit D [Escherichia coli MS 85-1]
gi|320176652|gb|EFW51693.1| Fumarate reductase subunit D [Shigella dysenteriae CDC 74-1112]
gi|320180669|gb|EFW55596.1| Fumarate reductase subunit D [Shigella boydii ATCC 9905]
gi|320187547|gb|EFW62231.1| Fumarate reductase subunit D [Shigella flexneri CDC 796-83]
gi|320200714|gb|EFW75300.1| Fumarate reductase subunit D [Escherichia coli EC4100B]
gi|323156029|gb|EFZ42191.1| fumarate reductase subunit D [Escherichia coli EPECa14]
gi|323162075|gb|EFZ47946.1| fumarate reductase subunit D [Escherichia coli E128010]
gi|323171587|gb|EFZ57233.1| fumarate reductase subunit D [Escherichia coli LT-68]
gi|323946092|gb|EGB42128.1| fumarate reductase D [Escherichia coli H120]
gi|324019333|gb|EGB88552.1| fumarate reductase subunit D [Escherichia coli MS 117-3]
gi|324118721|gb|EGC12613.1| fumarate reductase subunit D [Escherichia coli E1167]
gi|331061650|gb|EGI33576.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein)
[Escherichia coli TA271]
gi|331071749|gb|EGI43085.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein)
[Escherichia coli H591]
gi|332083153|gb|EGI88384.1| fumarate reductase subunit D [Shigella boydii 5216-82]
gi|332103289|gb|EGJ06635.1| fumarate reductase subunit D [Shigella sp. D9]
gi|340731612|gb|EGR60754.1| fumarate reductase subunit D [Escherichia coli O104:H4 str. 01-09591]
gi|340737414|gb|EGR71673.1| fumarate reductase subunit D [Escherichia coli O104:H4 str. LB226692]
gi|341918031|gb|EGT67646.1| hypothetical protein C22711_1675 [Escherichia coli O104:H4 str.
C227-11]
gi|342929467|gb|EGU98189.1| fumarate reductase subunit D [Escherichia coli MS 79-10]
gi|345331010|gb|EGW63473.1| fumarate reductase subunit D [Escherichia coli 2534-86]
gi|345332059|gb|EGW64517.1| fumarate reductase subunit D [Escherichia coli STEC_B2F1]
gi|345345413|gb|EGW77751.1| fumarate reductase subunit D [Escherichia coli STEC_94C]
gi|345347076|gb|EGW79391.1| fumarate reductase subunit D [Escherichia coli 3030-1]
gi|345366511|gb|EGW98600.1| fumarate reductase subunit D [Escherichia coli STEC_DG131-3]
gi|345369362|gb|EGX01346.1| fumarate reductase subunit D [Escherichia coli STEC_H.1.8]
Length=119
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 55/89 (62%), Gaps = 3/89 (3%)
Query 10 SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT 67
+ +RS EP W LF AGGM +A++APV++LL G+ PLG DA + +LA ++ I
Sbjct 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64
Query 68 KLVVLVLVVLALFHAAHRFRFVLDHGLQL 96
++ + +++VL L+ HR + H L++
Sbjct 65 RVFLFLMIVLPLWCGLHRMHHAM-HDLKI 92
Lambda K H
0.333 0.143 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130354689300
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40