BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1555

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308377764|ref|ZP_07480325.2|  putative 4Fe-4S binding domain p...   247    4e-64
gi|15608693|ref|NP_216071.1|  fumarate reductase subunit D [Mycob...   244    3e-63
gi|340626575|ref|YP_004745027.1|  putative fumarate reductase [me...   242    1e-62
gi|289761717|ref|ZP_06521095.1|  fumarate reductase [membrane anc...  85.9    2e-15
gi|333920623|ref|YP_004494204.1|  Fumarate reductase subunit D [A...  85.1    3e-15
gi|257092548|ref|YP_003166189.1|  fumarate reductase subunit D [C...  78.6    3e-13
gi|332527675|ref|ZP_08403720.1|  fumarate reductase subunit D [Ru...  70.5    8e-11
gi|34498821|ref|NP_903036.1|  fumarate reductase subunit D [Chrom...  69.3    2e-10
gi|217977884|ref|YP_002362031.1|  fumarate reductase subunit D [M...  66.2    1e-09
gi|119946887|ref|YP_944567.1|  fumarate reductase, D subunit [Psy...  65.1    3e-09
gi|319943873|ref|ZP_08018154.1|  fumarate reductase [Lautropia mi...  63.5    9e-09
gi|90407176|ref|ZP_01215364.1|  fumarate reductase, 13 kDa hydrop...  62.4    2e-08
gi|254362606|ref|ZP_04978700.1|  succinate dehydrogenase [Mannhei...  59.7    1e-07
gi|149909943|ref|ZP_01898592.1|  putative fumarate reductase [Mor...  59.3    2e-07
gi|315633840|ref|ZP_07889129.1|  fumarate reductase subunit D [Ag...  59.3    2e-07
gi|319775236|ref|YP_004137724.1|  fumarate reductase subunit D [H...  59.3    2e-07
gi|145632191|ref|ZP_01787926.1|  fumarate reductase subunit D [Ha...  58.9    2e-07
gi|68249427|ref|YP_248539.1|  fumarate reductase subunit D [Haemo...  58.9    2e-07
gi|343509478|ref|ZP_08746750.1|  fumarate reductase subunit D [Vi...  58.9    2e-07
gi|343508355|ref|ZP_08745698.1|  fumarate reductase subunit D [Vi...  58.9    2e-07
gi|37681284|ref|NP_935893.1|  fumarate reductase subunit D [Vibri...  58.5    3e-07
gi|27364667|ref|NP_760195.1|  fumarate reductase subunit D [Vibri...  58.5    4e-07
gi|237809233|ref|YP_002893673.1|  fumarate reductase D subunit [T...  57.8    5e-07
gi|323494458|ref|ZP_08099564.1|  fumarate reductase subunit D [Vi...  57.8    5e-07
gi|16272773|ref|NP_438992.1|  fumarate reductase subunit D [Haemo...  57.8    6e-07
gi|91228405|ref|ZP_01262331.1|  fumarate reductase subunit D [Vib...  57.4    7e-07
gi|333955626|gb|EGL73364.1|  fumarate reductase subunit D [Cronob...  57.4    7e-07
gi|260779590|ref|ZP_05888480.1|  fumarate reductase subunit D [Vi...  57.4    7e-07
gi|260770858|ref|ZP_05879787.1|  fumarate reductase subunit D [Vi...  57.4    7e-07
gi|317493554|ref|ZP_07951975.1|  fumarate reductase subunit D pro...  57.4    8e-07
gi|336450981|ref|ZP_08621427.1|  fumarate reductase subunit D [Id...  57.0    8e-07
gi|254508179|ref|ZP_05120304.1|  fumarate reductase subunit D [Vi...  57.0    1e-06
gi|237729089|ref|ZP_04559570.1|  FrdD [Citrobacter sp. 30_2] >gi|...  56.6    1e-06
gi|343498953|ref|ZP_08736958.1|  fumarate reductase subunit D [Vi...  56.6    1e-06
gi|33358375|gb|AAQ16662.1|  FrdD [Escherichia coli]                   56.6    1e-06
gi|323498092|ref|ZP_08103096.1|  fumarate reductase subunit D [Vi...  56.2    1e-06
gi|270264983|ref|ZP_06193246.1|  fumarate reductase subunit D [Se...  56.2    2e-06
gi|195941146|ref|ZP_03086528.1|  fumarate reductase subunit D [Es...  56.2    2e-06
gi|334704006|ref|ZP_08519872.1|  fumarate reductase, 13 kDa hydro...  56.2    2e-06
gi|148828018|ref|YP_001292771.1|  fumarate reductase subunit D [H...  56.2    2e-06
gi|331650280|ref|ZP_08351352.1|  fumarate reductase subunit D (Fu...  56.2    2e-06
gi|332288835|ref|YP_004419687.1|  fumarate reductase subunit D [G...  55.8    2e-06
gi|157368663|ref|YP_001476652.1|  fumarate reductase subunit D [S...  55.8    2e-06
gi|28899617|ref|NP_799222.1|  fumarate reductase subunit D [Vibri...  55.8    2e-06
gi|262393008|ref|YP_003284862.1|  fumarate reductase subunit D [V...  55.8    2e-06
gi|269962495|ref|ZP_06176844.1|  Fumarate reductase subunit D [Vi...  55.8    2e-06
gi|254285851|ref|ZP_04960813.1|  fumarate reductase, 13 kDa hydro...  55.8    2e-06
gi|153834934|ref|ZP_01987601.1|  fumarate reductase subunit D [Vi...  55.8    2e-06
gi|222035926|emb|CAP78671.1|  Fumarate reductase subunit D [Esche...  55.8    2e-06
gi|74314641|ref|YP_313060.1|  fumarate reductase subunit D [Shige...  55.8    2e-06


>gi|308377764|ref|ZP_07480325.2| putative 4Fe-4S binding domain protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308354721|gb|EFP43572.1| putative 4Fe-4S binding domain protein [Mycobacterium tuberculosis 
SUMu009]
Length=497

 Score =  247 bits (631),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60
            MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA
Sbjct  373  MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  432

Query  61   MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  120
            MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW
Sbjct  433  MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  492

Query  121  MLLTM  125
            MLLTM
Sbjct  493  MLLTM  497


>gi|15608693|ref|NP_216071.1| fumarate reductase subunit D [Mycobacterium tuberculosis H37Rv]
 gi|15841022|ref|NP_336059.1| fumarate reductase subunit D [Mycobacterium tuberculosis CDC1551]
 gi|31792739|ref|NP_855232.1| fumarate reductase subunit D [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=125

 Score =  244 bits (623),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60
            MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA
Sbjct  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60

Query  61   MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  120
            MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW
Sbjct  61   MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  120

Query  121  MLLTM  125
            MLLTM
Sbjct  121  MLLTM  125


>gi|340626575|ref|YP_004745027.1| putative fumarate reductase [membrane anchor subunit] FRDD [Mycobacterium 
canettii CIPT 140010059]
 gi|340004765|emb|CCC43909.1| putative fumarate reductase [membrane anchor subunit] FRDD (FUMARATE 
dehydrogenase) (fumaric hydrogenase) [Mycobacterium 
canettii CIPT 140010059]
Length=125

 Score =  242 bits (617),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 124/125 (99%), Positives = 124/125 (99%), Gaps = 0/125 (0%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60
            MTPSTSDAR RRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA
Sbjct  1    MTPSTSDARPRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60

Query  61   MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  120
            MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW
Sbjct  61   MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  120

Query  121  MLLTM  125
            MLLTM
Sbjct  121  MLLTM  125


>gi|289761717|ref|ZP_06521095.1| fumarate reductase [membrane anchor subunit] frdD [Mycobacterium 
tuberculosis GM 1503]
 gi|289709223|gb|EFD73239.1| fumarate reductase [membrane anchor subunit] frdD [Mycobacterium 
tuberculosis GM 1503]
Length=126

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 60/97 (62%), Positives = 61/97 (63%), Gaps = 0/97 (0%)

Query  1   MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60
           MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAF  G    P  G    
Sbjct  1   MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFRSGGSTRPTTGTYWR  60

Query  61  MVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLG  97
                   L+          HAAHRFRFVL      G
Sbjct  61  WCATRSPSLLCWSWWYWPCSHAAHRFRFVLRPWAATG  97


>gi|333920623|ref|YP_004494204.1| Fumarate reductase subunit D [Amycolicicoccus subflavus DQS3-9A1]
 gi|333482844|gb|AEF41404.1| Fumarate reductase subunit D [Amycolicicoccus subflavus DQS3-9A1]
Length=121

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 55/121 (46%), Positives = 78/121 (65%), Gaps = 1/121 (0%)

Query  5    TSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRN  64
            T    +RR   EP  WLLFSAGGM  AL  PVL+LLFG+  PLG + +P H HL +++ N
Sbjct  2    TLPVENRRARWEPIAWLLFSAGGMSAALFLPVLVLLFGVLAPLG-VVSPSHEHLYSVLSN  60

Query  65   PITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGWMLLT  124
            P+T LV+  ++ L+ FH AHRFR ++  G +L     VI++ CYG+A LG+   G ++L 
Sbjct  61   PLTMLVLFGVLSLSAFHWAHRFRHIMSDGFRLRPLAGVISIACYGVAALGTVVIGAVILQ  120

Query  125  M  125
            +
Sbjct  121  V  121


>gi|257092548|ref|YP_003166189.1| fumarate reductase subunit D [Candidatus Accumulibacter phosphatis 
clade IIA str. UW-1]
 gi|257045072|gb|ACV34260.1| fumarate reductase D subunit [Candidatus Accumulibacter phosphatis 
clade IIA str. UW-1]
Length=123

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 50/129 (39%), Positives = 75/129 (59%), Gaps = 12/129 (9%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPD---HGH  57
            M P+T      +RS  P  W LF AGGM++AL+ P+L+ + G+A PLG +  PD   + H
Sbjct  1    MKPTT-----LKRSNAPIFWALFGAGGMLSALLGPMLVFITGIAVPLGVVLPPDTMSYPH  55

Query  58   LLAMVRNPITKLVVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAVLGSA  116
            +LA  +N I K  +  ++ L L+HAAHR F  + D G+  G   +   L CYG A++G+ 
Sbjct  56   MLAFAKNFIGKGFIFAIIALFLWHAAHRIFHSLHDIGIHAGTGAK---LLCYGTAMVGTL  112

Query  117  TAGWMLLTM  125
             A + LL +
Sbjct  113  IAAYALLAI  121


>gi|332527675|ref|ZP_08403720.1| fumarate reductase subunit D [Rubrivivax benzoatilyticus JA2]
 gi|332112077|gb|EGJ12053.1| fumarate reductase subunit D [Rubrivivax benzoatilyticus JA2]
Length=118

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 46/118 (39%), Positives = 67/118 (57%), Gaps = 7/118 (5%)

Query  12   RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPD---HGHLLAMVRNPITK  68
            +RS EP  W LF AGG+++ALV P L+L+ G+  PL  + +PD   + H+ A V +P+ K
Sbjct  2    KRSHEPIFWSLFGAGGVLSALVGPALILITGVLAPLAIVLSPDALSYAHVHAFVLHPLGK  61

Query  69   LVVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGSATAGWMLLTM  125
            L VL ++ L LFH  HR    L D G+  G      A++ YG A +GS     +L  +
Sbjct  62   LAVLAVIALFLFHGCHRMLHSLHDLGVHAGHGA---AVFFYGFATVGSLVCAALLFAI  116


>gi|34498821|ref|NP_903036.1| fumarate reductase subunit D [Chromobacterium violaceum ATCC 
12472]
 gi|34104673|gb|AAQ61030.1| fumarate reductase, subunit D [Chromobacterium violaceum ATCC 
12472]
Length=120

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 47/117 (41%), Positives = 65/117 (56%), Gaps = 6/117 (5%)

Query  9    RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI  66
            R  +RS  P  W LF AGGM+ AL  P+L+ + G A PLGWL   A  +   LA+ ++  
Sbjct  4    RQLKRSHAPIFWGLFGAGGMLAALFGPMLVAITGFAAPLGWLPAKAASYQGALALAQSLT  63

Query  67   TKLVVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGSATAGWML  122
             KLV+  L+ L L+HAAHR    L D G+  G   + +    YG+A  G+  A W+L
Sbjct  64   GKLVLWGLISLLLWHAAHRIYHSLHDVGVHGGPLAKAL---TYGVAAAGTLAAMWLL  117


>gi|217977884|ref|YP_002362031.1| fumarate reductase subunit D [Methylocella silvestris BL2]
 gi|217503260|gb|ACK50669.1| fumarate reductase D subunit [Methylocella silvestris BL2]
Length=127

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 44/102 (44%), Positives = 55/102 (54%), Gaps = 5/102 (4%)

Query  13   RSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGW---LDAPDHGHLLAMVRNPITKL  69
            RS  P  WLLF AGGM++AL  P L++L G+  P GW    D  D  H LA  RNPI KL
Sbjct  12   RSVAPVFWLLFGAGGMLSALFGPALIILTGIMAPHGWGVPADFADFPHALAFARNPIGKL  71

Query  70   VVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMA  111
            V+L ++ L  +H A R    L      G    V+ L  YG+A
Sbjct  72   VLLAVISLFFWHGAERLFLTLKDMRVAGA--PVLRLATYGVA  111


>gi|119946887|ref|YP_944567.1| fumarate reductase, D subunit [Psychromonas ingrahamii 37]
 gi|119865491|gb|ABM04968.1| fumarate reductase, D subunit [Psychromonas ingrahamii 37]
Length=125

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 44/125 (36%), Positives = 68/125 (55%), Gaps = 5/125 (4%)

Query  4    STSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPD--HGHLLAM  61
            S +  +   RS EP  W LF AGGM+TA + PV++L+ G+  PLG +D+ +  +  +   
Sbjct  2    SNTTEKIYTRSHEPIFWGLFGAGGMLTAFLTPVMILITGILIPLGLIDSKNLSYEKVHHF  61

Query  62   VRNPITKLVVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGW  120
              +     +VLVLV L L+H  HR +  + D G++ GR   +  ++CYG A   S     
Sbjct  62   ATSWYGAAIVLVLVALPLWHTLHRIYHGLHDIGIKRGR--DLQQVFCYGFAFAVSVFVFT  119

Query  121  MLLTM  125
            +LL M
Sbjct  120  LLLQM  124


>gi|319943873|ref|ZP_08018154.1| fumarate reductase [Lautropia mirabilis ATCC 51599]
 gi|319743106|gb|EFV95512.1| fumarate reductase [Lautropia mirabilis ATCC 51599]
Length=127

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 46/129 (36%), Positives = 69/129 (54%), Gaps = 8/129 (6%)

Query  1    MTPS-TSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL---DAPDHG  56
            MTPS T D    +R+ EP +W LF AGG+++A+  P+L+L+  +  PLG L       + 
Sbjct  1    MTPSHTVDEAPLKRTHEPIVWSLFGAGGVLSAMFGPMLILVTTILVPLGILLPTGTLSYA  60

Query  57   HLLAMVRNPITKLVVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGS  115
             +LA  +    K+ +L +V L L+HA HR    L D G   G   +++   CYG A + S
Sbjct  61   RVLAFAQWWPGKIAILAVVALFLYHAMHRLCHSLHDLGFHTGTGAQIV---CYGFATVMS  117

Query  116  ATAGWMLLT  124
                 +LLT
Sbjct  118  GVCAVLLLT  126


>gi|90407176|ref|ZP_01215364.1| fumarate reductase, 13 kDa hydrophobic protein [Psychromonas 
sp. CNPT3]
 gi|90311752|gb|EAS39849.1| fumarate reductase, 13 kDa hydrophobic protein [Psychromonas 
sp. CNPT3]
Length=125

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/102 (39%), Positives = 59/102 (58%), Gaps = 5/102 (4%)

Query  13   RSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKLV  70
            RS EP  W LF AGGM+ A + PV++L+ GL  P+G++D     + +L +        ++
Sbjct  11   RSHEPIFWGLFGAGGMLCAFLTPVMILITGLLIPMGYIDRSHFSYNNLHSFAGTWYGAII  70

Query  71   VLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMA  111
            +LVLV L L+H  HR F  + D G++ GR   +  + CYG A
Sbjct  71   ILVLVALPLWHTLHRIFHGLHDLGVKRGR--DLQQVLCYGFA  110


>gi|254362606|ref|ZP_04978700.1| succinate dehydrogenase [Mannheimia haemolytica PHL213]
 gi|261493896|ref|ZP_05990408.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495162|ref|ZP_05991626.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|110735327|gb|ABG89234.1| fumarate reductase [Mannheimia haemolytica]
 gi|153094214|gb|EDN75096.1| succinate dehydrogenase [Mannheimia haemolytica PHL213]
 gi|261309232|gb|EEY10471.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310498|gb|EEY11689.1| fumarate reductase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length=115

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 54/87 (63%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WLLFSAGGMV+AL  PV++ + GL  P G L +PD  ++++     I K
Sbjct  5   QNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG-LVSPD--NIISFAHTWIGK  61

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           L ++VL +  ++   HR    + HGL 
Sbjct  62  LAIMVLAIFPMWAGMHR----IHHGLH  84


>gi|149909943|ref|ZP_01898592.1| putative fumarate reductase [Moritella sp. PE36]
 gi|149806957|gb|EDM66916.1| putative fumarate reductase [Moritella sp. PE36]
Length=126

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 40/112 (36%), Positives = 60/112 (54%), Gaps = 3/112 (2%)

Query  4    STSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGH--LLAM  61
            S  + +   RS EP  W LF AGGM+TA + PV+++L GL  PLG +D  +  +  L   
Sbjct  2    SEMNKKIYVRSHEPVFWGLFGAGGMLTAFLTPVMIVLTGLLIPLGIIDQGNFNYQTLHGF  61

Query  62   VRNPITKLVVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAV  112
                    ++LVLV L L+H  HR F  + D G++ GR  + +  + +  AV
Sbjct  62   ATTWYGAGIILVLVALPLWHTLHRIFHALHDLGVKRGRDWQQVLSYGFAFAV  113


>gi|315633840|ref|ZP_07889129.1| fumarate reductase subunit D [Aggregatibacter segnis ATCC 33393]
 gi|315477090|gb|EFU67833.1| fumarate reductase subunit D [Aggregatibacter segnis ATCC 33393]
Length=114

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/87 (40%), Positives = 56/87 (65%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WL+FSAGGMV+AL  PVL+L+ G   P G + +P+  +++A   + + K
Sbjct  4   QNPKRSNEPPVWLMFSAGGMVSALAFPVLILILGFLLPFG-IVSPE--NIIAFAHHWLGK  60

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           LV+LVL +  ++   HR    + HG+ 
Sbjct  61  LVILVLTIFPMWGGLHR----VHHGMH  83


>gi|319775236|ref|YP_004137724.1| fumarate reductase subunit D [Haemophilus influenzae F3047]
 gi|319897674|ref|YP_004135871.1| fumarate reductase subunit d [Haemophilus influenzae F3031]
 gi|329122839|ref|ZP_08251411.1| fumarate reductase subunit D [Haemophilus aegyptius ATCC 11116]
 gi|317433180|emb|CBY81554.1| fumarate reductase subunit D [Haemophilus influenzae F3031]
 gi|317449827|emb|CBY86035.1| fumarate reductase subunit D [Haemophilus influenzae F3047]
 gi|327472103|gb|EGF17541.1| fumarate reductase subunit D [Haemophilus aegyptius ATCC 11116]
Length=114

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/87 (38%), Positives = 53/87 (61%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WL+F AGG V+A+  PV++L+ GL  P G +DA +   L+    + I K
Sbjct  4   QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVDAHN---LITFAYSWIGK  60

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           LV+LVL +  ++   HR    + HG+ 
Sbjct  61  LVILVLTIFPMWCGLHR----IHHGMH  83


>gi|145632191|ref|ZP_01787926.1| fumarate reductase subunit D [Haemophilus influenzae 3655]
 gi|145634756|ref|ZP_01790464.1| fumarate reductase subunit D [Haemophilus influenzae PittAA]
 gi|145636607|ref|ZP_01792274.1| fumarate reductase subunit D [Haemophilus influenzae PittHH]
 15 more sequence titles
 Length=114

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/87 (38%), Positives = 53/87 (61%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WL+F AGG V+A+  PV++L+ GL  P G +DA +   L+    + I K
Sbjct  4   QNPKRSGEPPVWLMFGAGGTVSAIFFPVVILIIGLLLPFGLVDAHN---LITFAYSWIGK  60

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           LV+LVL +  ++   HR    + HG+ 
Sbjct  61  LVILVLTIFPMWCGLHR----IHHGMH  83


>gi|68249427|ref|YP_248539.1| fumarate reductase subunit D [Haemophilus influenzae 86-028NP]
 gi|260581649|ref|ZP_05849446.1| fumarate reductase subunit D [Haemophilus influenzae NT127]
 gi|81336145|sp|Q4QM68.1|FRDD_HAEI8 RecName: Full=Fumarate reductase subunit D
 gi|68057626|gb|AAX87879.1| fumarate reductase subunit D [Haemophilus influenzae 86-028NP]
 gi|260095242|gb|EEW79133.1| fumarate reductase subunit D [Haemophilus influenzae NT127]
 gi|301169551|emb|CBW29152.1| fumarate reductase (anaerobic), membrane anchor subunit [Haemophilus 
influenzae 10810]
 gi|309973676|gb|ADO96877.1| Fumarate reductase, subunit D [Haemophilus influenzae R2846]
Length=114

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/87 (38%), Positives = 53/87 (61%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WL+F AGG V+A+  PV++L+ GL  P G +DA +   L+    + I K
Sbjct  4   QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVDAHN---LITFAYSWIGK  60

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           LV+LVL +  ++   HR    + HG+ 
Sbjct  61  LVILVLTIFPMWCGLHR----IHHGMH  83


>gi|343509478|ref|ZP_08746750.1| fumarate reductase subunit D [Vibrio scophthalmi LMG 19158]
 gi|343515929|ref|ZP_08752977.1| fumarate reductase subunit D [Vibrio sp. N418]
 gi|342797564|gb|EGU33212.1| fumarate reductase subunit D [Vibrio sp. N418]
 gi|342804493|gb|EGU39810.1| fumarate reductase subunit D [Vibrio scophthalmi LMG 19158]
Length=125

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 42/122 (35%), Positives = 63/122 (52%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            MTP+     S RRS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  +
Sbjct  1    MTPNFKVDHSPRRSDEPIWWSLFGAGGTWFAMITPITVLVLGILAPLGIIDAEALSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F   +A  + CY  A L SA
Sbjct  61   SEFATSIIGALFIIGSLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|343508355|ref|ZP_08745698.1| fumarate reductase subunit D [Vibrio ichthyoenteri ATCC 700023]
 gi|342793863|gb|EGU29647.1| fumarate reductase subunit D [Vibrio ichthyoenteri ATCC 700023]
Length=125

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 42/122 (35%), Positives = 62/122 (51%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            MTP+     S RRS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +   
Sbjct  1    MTPNYKVDHSPRRSDEPIWWSLFGAGGTWFAMITPITILVLGILAPLGIIDAEALSYERA  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F   +A  + CY  A L SA
Sbjct  61   SEFATSIIGALFIIGSLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|37681284|ref|NP_935893.1| fumarate reductase subunit D [Vibrio vulnificus YJ016]
 gi|320155062|ref|YP_004187441.1| fumarate reductase subunit D [Vibrio vulnificus MO6-24/O]
 gi|71152056|sp|Q7MGX4.1|FRDD_VIBVY RecName: Full=Fumarate reductase subunit D
 gi|37200035|dbj|BAC95864.1| fumarate reductase subunit D [Vibrio vulnificus YJ016]
 gi|319930374|gb|ADV85238.1| fumarate reductase subunit D [Vibrio vulnificus MO6-24/O]
Length=125

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 39/122 (32%), Positives = 66/122 (55%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ +  R+ +RS EP  W LF AGG   A++ PV +L+ G+  P+G ++A    +  +
Sbjct  1    MKPNYNVDRAPKRSDEPVWWSLFGAGGTWFAMITPVTVLVLGILVPMGVINAEALSYDRV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
            ++   + I  L ++  + L ++HA HR    + HG+   +F    V  + CY +A L SA
Sbjct  61   VSFATSIIGALFIIATLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAIAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|27364667|ref|NP_760195.1| fumarate reductase subunit D [Vibrio vulnificus CMCP6]
 gi|34582310|sp|Q8DCX4.1|FRDD_VIBVU RecName: Full=Fumarate reductase subunit D
 gi|27360812|gb|AAO09722.1| Fumarate reductase subunit D [Vibrio vulnificus CMCP6]
Length=125

 Score = 58.5 bits (140),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 39/122 (32%), Positives = 66/122 (55%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ +  R+ +RS EP  W LF AGG   A++ PV +L+ G+  P+G ++A    +  +
Sbjct  1    MKPNYNVDRAPKRSDEPVWWSLFGAGGTWFAMITPVTVLVLGILVPMGVINAEALSYDRV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
            ++   + I  L ++  + L ++HA HR    + HG+   +F    V  + CY +A L SA
Sbjct  61   VSFATSIIGALFIIATLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAVAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|237809233|ref|YP_002893673.1| fumarate reductase D subunit [Tolumonas auensis DSM 9187]
 gi|237501494|gb|ACQ94087.1| fumarate reductase D subunit [Tolumonas auensis DSM 9187]
Length=116

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 41/110 (38%), Positives = 62/110 (57%), Gaps = 6/110 (5%)

Query  12   RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL  69
            +RS EP  WLLF AGG+V A++ PVL+L+ GL  PLG LDA    +  + A+  +     
Sbjct  2    KRSDEPIYWLLFGAGGVVAAVLLPVLILISGLMVPLGILDADTLSYEKMHALATSWWGAP  61

Query  70   VVLVLVVLALFHAAHR-FRFVLDHGLQLGRFDRVIALWCYGMAVLGSATA  118
            ++L ++ L ++HA HR +  + D G+   +F   +    YG A L S  A
Sbjct  62   ILLAVIALPIYHAMHRIYHGLHDLGIHPTKFLHYL---LYGFAFLVSVAA  108


>gi|323494458|ref|ZP_08099564.1| fumarate reductase subunit D [Vibrio brasiliensis LMG 20546]
 gi|323311281|gb|EGA64439.1| fumarate reductase subunit D [Vibrio brasiliensis LMG 20546]
Length=125

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 41/122 (34%), Positives = 64/122 (53%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHL  58
            M P+ S  R+ +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +  DA  +  +
Sbjct  1    MKPNFSVDRAPKRSDEPIWWGLFGAGGTWFAMITPITILVLGVLVPLGVINADALSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA  116
            +    + I  L ++  + L ++HA HR    + HG+   +F   I   + CY  A L SA
Sbjct  61   VDFATSIIGALFIIATLALPMWHAMHR----VHHGMHDLKFHTGIVGKVACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|16272773|ref|NP_438992.1| fumarate reductase subunit D [Haemophilus influenzae Rd KW20]
 gi|145628270|ref|ZP_01784071.1| fumarate reductase subunit D [Haemophilus influenzae 22.1-21]
 gi|145630581|ref|ZP_01786361.1| fumarate reductase subunit D [Haemophilus influenzae R3021]
 9 more sequence titles
 Length=114

 Score = 57.8 bits (138),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 32/87 (37%), Positives = 52/87 (60%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WL+F AGG V+A+  PV++L+ GL  P G +D  +   L+    + I K
Sbjct  4   QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVDVHN---LITFAYSWIGK  60

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           LV+LVL +  ++   HR    + HG+ 
Sbjct  61  LVILVLTIFPMWCGLHR----IHHGMH  83


>gi|91228405|ref|ZP_01262331.1| fumarate reductase subunit D [Vibrio alginolyticus 12G01]
 gi|269966839|ref|ZP_06180912.1| Fumarate reductase subunit D [Vibrio alginolyticus 40B]
 gi|91188046|gb|EAS74352.1| fumarate reductase subunit D [Vibrio alginolyticus 12G01]
 gi|269828506|gb|EEZ82767.1| Fumarate reductase subunit D [Vibrio alginolyticus 40B]
Length=125

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 40/122 (33%), Positives = 63/122 (52%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S   S +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  +
Sbjct  1    MKPNYSVNTSPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA  116
             A   + I  L ++  + L ++HA HR    + HG+   +F   +   + CY  A L +A
Sbjct  61   SAFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVIGKIACYAFAGLITA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|333955626|gb|EGL73364.1| fumarate reductase subunit D [Cronobacter sakazakii E899]
Length=119

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 38/108 (36%), Positives = 60/108 (56%), Gaps = 7/108 (6%)

Query  9    RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI  66
            R  +RS EP  W LF AGGM  A++APV++LL G+  PLG    DA  +  +LA  ++ +
Sbjct  4    RHPKRSDEPVFWGLFGAGGMWCAIIAPVIILLVGILLPLGMAPEDAFSYERVLAFAQSWV  63

Query  67   TKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWC-YGMAVL  113
             +L + +++VL L+   HR    + HG+   +       W  YG+A +
Sbjct  64   GRLFLFLMIVLPLWCGLHR----IHHGMHDLKIHVPAGKWVFYGLAAI  107


>gi|260779590|ref|ZP_05888480.1| fumarate reductase subunit D [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604399|gb|EEX30703.1| fumarate reductase subunit D [Vibrio coralliilyticus ATCC BAA-450]
Length=125

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 40/120 (34%), Positives = 63/120 (53%), Gaps = 8/120 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S  R+ +RS EP  W LF AGG   A++ PV +L+ G+  P+G +DA    +  +
Sbjct  1    MKPNFSIDRAPKRSDEPIWWSLFGAGGTWFAMITPVTVLILGILVPMGVIDAEAMSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSA  116
             A   + I  L ++  + L ++HA HR    + HG+   +    +A  + CY  A L SA
Sbjct  61   TAFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKIHAGLAGKVGCYAFAGLISA  116


>gi|260770858|ref|ZP_05879787.1| fumarate reductase subunit D [Vibrio furnissii CIP 102972]
 gi|260614095|gb|EEX39285.1| fumarate reductase subunit D [Vibrio furnissii CIP 102972]
 gi|315178901|gb|ADT85815.1| fumarate reductase subunit D [Vibrio furnissii NCTC 11218]
Length=120

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 40/113 (36%), Positives = 61/113 (54%), Gaps = 8/113 (7%)

Query  10   SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPIT  67
            + +RS EP  W LF AGG   A++ PV +L+ G+  PLG +DA    +  +   V + I 
Sbjct  5    NPKRSDEPVWWGLFGAGGTWFAMITPVTILVLGILAPLGIIDADAMSYERVSGFVTSIIG  64

Query  68   KLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSATA  118
             L V+  + L ++HA HR    + HG+   +F   +A  + CYG A + SA A
Sbjct  65   ALFVIGTLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYGFATIISALA  113


>gi|317493554|ref|ZP_07951975.1| fumarate reductase subunit D protein [Enterobacteriaceae bacterium 
9_2_54FAA]
 gi|316918497|gb|EFV39835.1| fumarate reductase subunit D protein [Enterobacteriaceae bacterium 
9_2_54FAA]
Length=118

 Score = 57.4 bits (137),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 33/91 (37%), Positives = 54/91 (60%), Gaps = 2/91 (2%)

Query  7   DARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL-DAPDHGHLLAMVRNP  65
           + +  +RS EP  W LF AGGM  A+VAPV++L+ G+  PLGW  DA      L+  +  
Sbjct  2   NNKVYKRSDEPVFWGLFGAGGMWGAIVAPVVILIVGIMLPLGWFPDALTFERALSFSQTF  61

Query  66  ITKLVVLVLVVLALFHAAHRFRFVLDHGLQL  96
           I ++  L++++L L+   HR   ++ H L++
Sbjct  62  IGRIFWLLMIILPLWCGLHRLHHMM-HDLKI  91


>gi|336450981|ref|ZP_08621427.1| fumarate reductase subunit D [Idiomarina sp. A28L]
 gi|336282237|gb|EGN75475.1| fumarate reductase subunit D [Idiomarina sp. A28L]
Length=123

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 47/129 (37%), Positives = 66/129 (52%), Gaps = 13/129 (10%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLA  60
            M  + + +R +    EP  W LFSAGG+  A+  P ++L+FG+  PLG +D         
Sbjct  1    MNANKTGSRWQGLHLEPLWWGLFSAGGVCFAVFIPAVVLIFGIMAPLGIIDISYQ-----  55

Query  61   MVRNPITKLVVLV----LVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSA  116
             VR     +  L+    ++ L  FHAAHR R  L H ++LG    V  + CYG+A   SA
Sbjct  56   QVRGYYASIWGLMFTGAVICLPAFHAAHRIRHGL-HDVKLGG-GLVSIIICYGLAATLSA  113

Query  117  T--AGWMLL  123
            T  A W LL
Sbjct  114  TTLAAWYLL  122


>gi|254508179|ref|ZP_05120304.1| fumarate reductase subunit D [Vibrio parahaemolyticus 16]
 gi|219548901|gb|EED25901.1| fumarate reductase subunit D [Vibrio parahaemolyticus 16]
Length=125

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/122 (35%), Positives = 63/122 (52%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHL  58
            M P+ S  R+ +RS EP  W LF AGG   A++ PV +L+ G+  PLG +  DA  +  +
Sbjct  1    MKPNFSVDRAPKRSDEPIWWGLFGAGGTWFAMITPVTILVLGILVPLGVINADALSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F    V  + CY  A L SA
Sbjct  61   SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKVACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|237729089|ref|ZP_04559570.1| FrdD [Citrobacter sp. 30_2]
 gi|283834773|ref|ZP_06354514.1| fumarate reductase subunit D [Citrobacter youngae ATCC 29220]
 gi|226908818|gb|EEH94736.1| FrdD [Citrobacter sp. 30_2]
 gi|291069018|gb|EFE07127.1| fumarate reductase subunit D [Citrobacter youngae ATCC 29220]
Length=118

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 33/88 (38%), Positives = 56/88 (64%), Gaps = 2/88 (2%)

Query  10  SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL-DAPDHGHLLAMVRNPITK  68
           + +RS EP  W LF AGGM +A++APV++LL G+  PLG++ DA  +  +LA  ++ I +
Sbjct  5   NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGIMLPLGFVPDAFSYERVLAFAQSFIGR  64

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQL  96
             + +++VL L+   HR    + H L++
Sbjct  65  AFLFLMIVLPLWCGLHRMHHAM-HDLKI  91


>gi|343498953|ref|ZP_08736958.1| fumarate reductase subunit D [Vibrio tubiashii ATCC 19109]
 gi|342823592|gb|EGU58204.1| fumarate reductase subunit D [Vibrio tubiashii ATCC 19109]
Length=125

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 41/122 (34%), Positives = 64/122 (53%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S  R+ +RS EP  W LF AGG   A++ PV +L+ G+  PLG ++A    +  +
Sbjct  1    MKPNFSVDRAPKRSDEPIWWGLFGAGGTWFAMITPVTILVLGVLAPLGIINAETLSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
            +    + I  L ++  + L ++HA HR    + HG+   +F    V  + CY  A L SA
Sbjct  61   VDFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGLVGKIACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|33358375|gb|AAQ16662.1| FrdD [Escherichia coli]
Length=119

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 56/89 (63%), Gaps = 3/89 (3%)

Query  10  SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT  67
           + +RS EP  W LF AGGM +A++APV++LL G+  PLG++  DA  +  +LA  ++ I 
Sbjct  5   NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGIMLPLGFVPGDAFSYERVLAFAQSFIG  64

Query  68  KLVVLVLVVLALFHAAHRFRFVLDHGLQL  96
           +  + +++VL L+   HR    + H L++
Sbjct  65  RAYLFLMIVLPLWCGLHRMHHAM-HDLKI  92


>gi|323498092|ref|ZP_08103096.1| fumarate reductase subunit D [Vibrio sinaloensis DSM 21326]
 gi|323316803|gb|EGA69810.1| fumarate reductase subunit D [Vibrio sinaloensis DSM 21326]
Length=125

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/122 (35%), Positives = 63/122 (52%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLD--APDHGHL  58
            M P+ S  R+ +RS EP  W LF AGG   A++ PV +L+ G+  PLG +D  A  +  +
Sbjct  1    MKPNYSVDRAPKRSDEPIWWGLFGAGGTWFAMITPVTILVLGVLAPLGVIDTEALSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F    V  + CY  A L SA
Sbjct  61   SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKVACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|270264983|ref|ZP_06193246.1| fumarate reductase subunit D [Serratia odorifera 4Rx13]
 gi|333925241|ref|YP_004498820.1| Fumarate reductase subunit D [Serratia sp. AS12]
 gi|333930194|ref|YP_004503772.1| Fumarate reductase subunit D [Serratia sp. AS9]
 gi|270040917|gb|EFA14018.1| fumarate reductase subunit D [Serratia odorifera 4Rx13]
 gi|333471801|gb|AEF43511.1| Fumarate reductase subunit D [Serratia sp. AS9]
 gi|333489301|gb|AEF48463.1| Fumarate reductase subunit D [Serratia sp. AS12]
 gi|333959398|gb|AEG26171.1| Fumarate reductase subunit D [Serratia sp. AS13]
Length=119

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 32/81 (40%), Positives = 50/81 (62%), Gaps = 2/81 (2%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI  66
           ++ +RS EP  W LF AGGM  A+VAP ++LL G+  PLG    DA  +  +LA  ++ I
Sbjct  4   QTPKRSDEPVFWGLFGAGGMWGAIVAPAIVLLVGILLPLGLFPGDALGYDRVLAFCQSLI  63

Query  67  TKLVVLVLVVLALFHAAHRFR  87
            +L +L++++L L+   HR  
Sbjct  64  GRLFLLLMIILPLWCGLHRIH  84


>gi|195941146|ref|ZP_03086528.1| fumarate reductase subunit D [Escherichia coli O157:H7 str. EC4024]
 gi|334123794|ref|ZP_08497812.1| fumarate reductase subunit D [Enterobacter hormaechei ATCC 49162]
 gi|306950625|gb|ADN07566.1| fumarate reductase subunit D [Enterobacter asburiae]
 gi|333390119|gb|EGK61268.1| fumarate reductase subunit D [Enterobacter hormaechei ATCC 49162]
Length=119

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 54/89 (61%), Gaps = 3/89 (3%)

Query  10  SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT  67
           + +RS EP  W LF AGGM +A++APV++LL G+  PLG    DA  +  +LA   + I 
Sbjct  5   NPKRSDEPVFWGLFGAGGMWSAIIAPVIILLVGIMLPLGLFPGDALSYERVLAFASSFIG  64

Query  68  KLVVLVLVVLALFHAAHRFRFVLDHGLQL  96
           ++ + +++VL L+   HR    + H L++
Sbjct  65  RVFIFLMIVLPLWCGLHRIHHAM-HDLKI  92


>gi|334704006|ref|ZP_08519872.1| fumarate reductase, 13 kDa hydrophobic protein [Aeromonas caviae 
Ae398]
Length=118

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 39/108 (37%), Positives = 58/108 (54%), Gaps = 6/108 (5%)

Query  12   RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL  69
            RRS EP  W LF AGGMV A++ PV++L+ GL  P+G +D     +  +LA   +     
Sbjct  2    RRSDEPIYWGLFGAGGMVVAMLLPVIVLITGLLVPMGIMDVETMSYERVLAFASSWWGAC  61

Query  70   VVLVLVVLALFHAAHRFRFVL-DHGLQLGRFDRVIALWCYGMAVLGSA  116
            ++LV++ L ++H  HR    L D G+   +    +    YG A L SA
Sbjct  62   ILLVIIALPVWHGMHRIYHGLHDLGIHTTKLHHYV---FYGFAFLVSA  106


>gi|148828018|ref|YP_001292771.1| fumarate reductase subunit D [Haemophilus influenzae PittGG]
 gi|166198771|sp|A5UHY2.1|FRDD_HAEIG RecName: Full=Fumarate reductase subunit D
 gi|148719260|gb|ABR00388.1| fumarate reductase subunit D [Haemophilus influenzae PittGG]
Length=114

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 31/87 (36%), Positives = 52/87 (60%), Gaps = 7/87 (8%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPITK  68
           ++ +RS EP +WL+F AGG V+A+  PV++L+ GL  P G ++  +   L+    + I K
Sbjct  4   QNPKRSGEPPVWLMFGAGGTVSAIFLPVVILIIGLLLPFGLVNVHN---LITFAYSWIGK  60

Query  69  LVVLVLVVLALFHAAHRFRFVLDHGLQ  95
           LV+LVL +  ++   HR    + HG+ 
Sbjct  61  LVILVLTIFPMWCGLHR----IHHGMH  83


>gi|331650280|ref|ZP_08351352.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein) 
[Escherichia coli M605]
 gi|331040674|gb|EGI12832.1| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprotein) 
[Escherichia coli M605]
Length=119

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 55/89 (62%), Gaps = 3/89 (3%)

Query  10  SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT  67
           + +RS EP  W LF AGGM +A++APV++LL G+  PLG    DA  +  +LA  ++ I 
Sbjct  5   NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG  64

Query  68  KLVVLVLVVLALFHAAHRFRFVLDHGLQL  96
           ++ + +++VL L+   HR    + H L++
Sbjct  65  RIFLFLMIVLPLWCGLHRMHHAM-HDLKI  92


>gi|332288835|ref|YP_004419687.1| fumarate reductase subunit D [Gallibacterium anatis UMN179]
 gi|330431731|gb|AEC16790.1| fumarate reductase subunit D [Gallibacterium anatis UMN179]
Length=114

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 40/114 (36%), Positives = 61/114 (54%), Gaps = 16/114 (14%)

Query  7    DARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAPDHGHLLAMVRNPI  66
            +  + +RS EP +WLLF AGG ++A+  PVL+L+ G   P G L +PD  +++A     I
Sbjct  2    NKETPKRSNEPVVWLLFGAGGAISAVFFPVLVLILGFLLPFG-LVSPD--NIIAFAHTWI  58

Query  67   TKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI-----ALWCYGMAVLGS  115
             KL +LVL++   +   HR        + LG  D  +      +  YG+AVL S
Sbjct  59   GKLAILVLLIFPTWCGIHR--------IHLGLHDFKVHIPASGVIFYGLAVLYS  104


>gi|157368663|ref|YP_001476652.1| fumarate reductase subunit D [Serratia proteamaculans 568]
 gi|166988474|sp|A8G8T4.1|FRDD_SERP5 RecName: Full=Fumarate reductase subunit D; AltName: Full=Fumarate 
reductase 13 kDa hydrophobic protein
 gi|157320427|gb|ABV39524.1| fumarate reductase D subunit [Serratia proteamaculans 568]
Length=119

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 31/81 (39%), Positives = 50/81 (62%), Gaps = 2/81 (2%)

Query  9   RSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPI  66
           ++ +RS EP  W LF AGGM  A++AP ++LL G+  PLG    DA  +  +LA  ++ I
Sbjct  4   QAPKRSDEPVFWGLFGAGGMWGAIIAPAIVLLVGILLPLGLFPGDALGYDRILAFCQSLI  63

Query  67  TKLVVLVLVVLALFHAAHRFR  87
            +L +L++++L L+   HR  
Sbjct  64  GRLFLLLMIILPLWCGLHRIH  84


>gi|28899617|ref|NP_799222.1| fumarate reductase subunit D [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837992|ref|ZP_01990659.1| fumarate reductase subunit D [Vibrio parahaemolyticus AQ3810]
 gi|260361266|ref|ZP_05774374.1| fumarate reductase subunit D [Vibrio parahaemolyticus K5030]
 11 more sequence titles
 Length=125

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 40/122 (33%), Positives = 63/122 (52%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S   S +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  +
Sbjct  1    MKPNYSVNTSPKRSDEPIWWGLFGAGGTWFAMLTPITVLVLGILVPLGVIDAEAMSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA  116
             A   + I  L ++  + L ++HA HR    + HG+   +F   +   + CY  A L +A
Sbjct  61   SAFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVIGKVACYAFAGLITA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|262393008|ref|YP_003284862.1| fumarate reductase subunit D [Vibrio sp. Ex25]
 gi|262336602|gb|ACY50397.1| fumarate reductase subunit D [Vibrio sp. Ex25]
Length=125

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 39/122 (32%), Positives = 62/122 (51%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S   S +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  +
Sbjct  1    MKPNYSVNTSPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVI--ALWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F   +   + CY  A L +A
Sbjct  61   SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVIGKIACYAFAGLITA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|269962495|ref|ZP_06176844.1| Fumarate reductase subunit D [Vibrio harveyi 1DA3]
 gi|269832791|gb|EEZ86901.1| Fumarate reductase subunit D [Vibrio harveyi 1DA3]
Length=125

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 40/122 (33%), Positives = 62/122 (51%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S   + +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  +
Sbjct  1    MKPNYSVNTAPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F    V  + CY  A L SA
Sbjct  61   SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|254285851|ref|ZP_04960813.1| fumarate reductase, 13 kDa hydrophobic protein [Vibrio cholerae 
AM-19226]
 gi|150424033|gb|EDN15972.1| fumarate reductase, 13 kDa hydrophobic protein [Vibrio cholerae 
AM-19226]
Length=130

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 37/111 (34%), Positives = 60/111 (55%), Gaps = 8/111 (7%)

Query  12   RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL  69
            +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  + +   + I  L
Sbjct  17   KRSDEPVWWSLFGAGGTWFAMITPITVLVLGILVPLGVIDAEALSYERVSSFATSIIGAL  76

Query  70   VVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIA--LWCYGMAVLGSATA  118
             ++  + L ++HA HR    + HG+   +F   +A  + CYG A + SA A
Sbjct  77   FIIGTLALPMWHAMHR----VHHGMHDLKFHTGVAGKIACYGFATIISALA  123


>gi|153834934|ref|ZP_01987601.1| fumarate reductase subunit D [Vibrio harveyi HY01]
 gi|156972502|ref|YP_001443409.1| fumarate reductase subunit D [Vibrio harveyi ATCC BAA-1116]
 gi|166198775|sp|A7MZ44.1|FRDD_VIBHB RecName: Full=Fumarate reductase subunit D
 gi|148868614|gb|EDL67700.1| fumarate reductase subunit D [Vibrio harveyi HY01]
 gi|156524096|gb|ABU69182.1| hypothetical protein VIBHAR_00134 [Vibrio harveyi ATCC BAA-1116]
Length=125

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 40/122 (33%), Positives = 62/122 (51%), Gaps = 8/122 (6%)

Query  1    MTPSTSDARSRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHL  58
            M P+ S   + +RS EP  W LF AGG   A++ P+ +L+ G+  PLG +DA    +  +
Sbjct  1    MKPNYSVNTAPKRSDEPIWWGLFGAGGTWFAMITPITVLVLGILVPLGVIDAEAMSYERV  60

Query  59   LAMVRNPITKLVVLVLVVLALFHAAHRFRFVLDHGLQLGRFDR--VIALWCYGMAVLGSA  116
                 + I  L ++  + L ++HA HR    + HG+   +F    V  + CY  A L SA
Sbjct  61   SEFATSIIGALFIIGTLALPMWHAMHR----VHHGMHDLKFHTGVVGKIACYAFAGLISA  116

Query  117  TA  118
             A
Sbjct  117  LA  118


>gi|222035926|emb|CAP78671.1| Fumarate reductase subunit D [Escherichia coli LF82]
Length=119

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 55/89 (62%), Gaps = 3/89 (3%)

Query  10  SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT  67
           + +RS EP  W LF AGGM +A++APV++LL G+  PLG    DA  +  +LA  ++ I 
Sbjct  5   NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG  64

Query  68  KLVVLVLVVLALFHAAHRFRFVLDHGLQL  96
           ++ + +++VL L+   HR    + H L++
Sbjct  65  RVFLFLMIVLPLWCGLHRMHHAM-HDLKI  92


>gi|74314641|ref|YP_313060.1| fumarate reductase subunit D [Shigella sonnei Ss046]
 gi|82546603|ref|YP_410550.1| fumarate reductase subunit D [Shigella boydii Sb227]
 gi|157158919|ref|YP_001465653.1| fumarate reductase subunit D [Escherichia coli E24377A]
 79 more sequence titles
 Length=119

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 55/89 (62%), Gaps = 3/89 (3%)

Query  10  SRRRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWL--DAPDHGHLLAMVRNPIT  67
           + +RS EP  W LF AGGM +A++APV++LL G+  PLG    DA  +  +LA  ++ I 
Sbjct  5   NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG  64

Query  68  KLVVLVLVVLALFHAAHRFRFVLDHGLQL  96
           ++ + +++VL L+   HR    + H L++
Sbjct  65  RVFLFLMIVLPLWCGLHRMHHAM-HDLKI  92



Lambda     K      H
   0.333    0.143    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130354689300


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40