BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1561
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608699|ref|NP_216077.1| hypothetical protein Rv1561 [Mycoba... 265 2e-69
gi|289757676|ref|ZP_06517054.1| conserved hypothetical protein [... 264 3e-69
gi|289574245|ref|ZP_06454472.1| toxin [Mycobacterium tuberculosi... 263 5e-69
gi|340626581|ref|YP_004745033.1| hypothetical protein MCAN_15831... 263 8e-69
gi|333989209|ref|YP_004521823.1| hypothetical protein JDM601_056... 191 3e-47
gi|297563899|ref|YP_003682872.1| PilT protein domain protein [No... 120 6e-26
gi|284990202|ref|YP_003408756.1| PilT protein domain-containing ... 97.8 5e-19
gi|296166368|ref|ZP_06848803.1| PIN family toxin-antitoxin syste... 91.3 4e-17
gi|258592453|emb|CBE68762.1| PilT-like protein [NC10 bacterium '... 88.6 3e-16
gi|292491388|ref|YP_003526827.1| PilT protein domain protein [Ni... 85.1 4e-15
gi|337281343|ref|YP_004620815.1| hypothetical protein Rta_36800 ... 84.7 4e-15
gi|149197028|ref|ZP_01874081.1| PilT protein-like protein [Lenti... 82.4 2e-14
gi|91789943|ref|YP_550895.1| PilT protein-like protein [Polaromo... 78.6 3e-13
gi|312888376|ref|ZP_07747952.1| PilT protein domain protein [Muc... 78.6 3e-13
gi|153876449|ref|ZP_02003764.1| PilT-like protein [Beggiatoa sp.... 76.3 1e-12
gi|298531198|ref|ZP_07018599.1| PilT protein domain protein [Des... 75.9 2e-12
gi|340627019|ref|YP_004745471.1| hypothetical protein MCAN_20301... 73.9 6e-12
gi|220906591|ref|YP_002481902.1| PilT protein domain-containing ... 73.6 9e-12
gi|254411087|ref|ZP_05024865.1| hypothetical protein MC7420_565 ... 73.6 1e-11
gi|15609147|ref|NP_216526.1| hypothetical protein Rv2010 [Mycoba... 72.8 2e-11
gi|166368977|ref|YP_001661250.1| hypothetical protein MAE_62360 ... 72.8 2e-11
gi|206890799|ref|YP_002249460.1| PIN domain protein [Thermodesul... 71.2 4e-11
gi|258590929|emb|CBE67224.1| PilT protein-like (fragment) [NC10 ... 71.2 5e-11
gi|344199677|ref|YP_004784003.1| PilT protein domain-containing ... 70.9 6e-11
gi|189499212|ref|YP_001958682.1| PilT protein domain-containing ... 70.5 8e-11
gi|284038008|ref|YP_003387938.1| PilT protein domain protein [Sp... 70.1 1e-10
gi|209526513|ref|ZP_03275039.1| PilT protein domain protein [Art... 70.1 1e-10
gi|284054545|ref|ZP_06384755.1| PilT protein domain protein [Art... 69.3 2e-10
gi|326798941|ref|YP_004316760.1| twitching mobility protein PilT... 68.6 3e-10
gi|42525796|ref|NP_970894.1| PilT domain-containing protein [Tre... 68.6 3e-10
gi|17229688|ref|NP_486236.1| hypothetical protein all2196 [Nosto... 68.2 4e-10
gi|77165012|ref|YP_343537.1| PilT-like protein [Nitrosococcus oc... 67.8 5e-10
gi|94968019|ref|YP_590067.1| PilT protein-like [Candidatus Korib... 67.0 8e-10
gi|88811564|ref|ZP_01126818.1| PilT-like protein [Nitrococcus mo... 66.6 1e-09
gi|146296532|ref|YP_001180303.1| PilT domain-containing protein ... 66.6 1e-09
gi|257456425|ref|ZP_05621621.1| PIN domain protein [Treponema vi... 66.2 2e-09
gi|328947662|ref|YP_004364999.1| PilT protein domain protein [Tr... 65.9 2e-09
gi|335034129|ref|ZP_08527490.1| hypothetical protein AGRO_1469 [... 65.1 4e-09
gi|256830294|ref|YP_003159022.1| twitching motility protein PilT... 64.7 5e-09
gi|308270311|emb|CBX26923.1| hypothetical protein N47_A09520 [un... 64.3 5e-09
gi|86357278|ref|YP_469170.1| hypothetical protein RHE_CH01644 [R... 62.8 1e-08
gi|330990376|ref|ZP_08314341.1| hypothetical protein SXCC_00294 ... 62.4 2e-08
gi|334346320|ref|YP_004554872.1| PilT protein domain-containing ... 62.4 2e-08
gi|320105490|ref|YP_004181080.1| PilT protein domain-containing ... 62.0 3e-08
gi|325292385|ref|YP_004278249.1| hypothetical protein AGROH133_0... 61.2 4e-08
gi|294341451|emb|CAZ89868.1| conserved hypothetical protein; put... 61.2 4e-08
gi|340778973|ref|ZP_08698916.1| PilT protein domain-containing p... 60.8 6e-08
gi|296137153|ref|YP_003644395.1| PilT protein domain protein [Th... 60.8 7e-08
gi|37522468|ref|NP_925845.1| hypothetical protein gll2899 [Gloeo... 60.5 7e-08
gi|331006113|ref|ZP_08329447.1| PilT protein domain protein [gam... 60.5 8e-08
>gi|15608699|ref|NP_216077.1| hypothetical protein Rv1561 [Mycobacterium tuberculosis H37Rv]
gi|15841028|ref|NP_336065.1| hypothetical protein MT1612 [Mycobacterium tuberculosis CDC1551]
gi|31792746|ref|NP_855239.1| hypothetical protein Mb1587 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=134
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER
Sbjct 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD
Sbjct 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
Query 121 VIARITNLQAASFR 134
VIARITNLQAASFR
Sbjct 121 VIARITNLQAASFR 134
>gi|289757676|ref|ZP_06517054.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289713240|gb|EFD77252.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=134
Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER
Sbjct 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD
Sbjct 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
Query 121 VIARITNLQAASFR 134
VIAR+TNLQAASFR
Sbjct 121 VIARVTNLQAASFR 134
>gi|289574245|ref|ZP_06454472.1| toxin [Mycobacterium tuberculosis K85]
gi|289538676|gb|EFD43254.1| toxin [Mycobacterium tuberculosis K85]
Length=134
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+LIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER
Sbjct 1 MMLIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD
Sbjct 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
Query 121 VIARITNLQAASFR 134
VIARITNLQAASFR
Sbjct 121 VIARITNLQAASFR 134
>gi|340626581|ref|YP_004745033.1| hypothetical protein MCAN_15831 [Mycobacterium canettii CIPT
140010059]
gi|340004771|emb|CCC43915.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=134
Score = 263 bits (671), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER
Sbjct 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD
Sbjct 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
Query 121 VIARITNLQAASFR 134
VIARIT+LQAASFR
Sbjct 121 VIARITSLQAASFR 134
>gi|333989209|ref|YP_004521823.1| hypothetical protein JDM601_0569 [Mycobacterium sp. JDM601]
gi|333485177|gb|AEF34569.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=134
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/134 (69%), Positives = 109/134 (82%), Gaps = 0/134 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS W+EYFRATGS AA+EVRRLLSEE ++ CEPIAMEIL+GA ++ T+ LER
Sbjct 1 MILVDTSVWIEYFRATGSAAALEVRRLLSEEPDQVVTCEPIAMEILAGASNEQTYRMLER 60
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
LVNGL SL V+ A DFR+AAGIYRAAR G+T+RSINDCLIAA+A+RH AR+ HRDADF+
Sbjct 61 LVNGLSSLGVETATDFRSAAGIYRAARSTGQTIRSINDCLIAAVALRHHARVAHRDADFE 120
Query 121 VIARITNLQAASFR 134
VI IT L S R
Sbjct 121 VIEGITGLMTTSLR 134
>gi|297563899|ref|YP_003682872.1| PilT protein domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848348|gb|ADH70366.1| PilT protein domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=139
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/125 (51%), Positives = 83/125 (67%), Gaps = 1/125 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
+ L+D+SAWVEY R TGS V VR L+ E +A EP+A EILSGA LER
Sbjct 4 VYLVDSSAWVEYLRKTGSETHVFVRELI-ERGVHLATTEPVAAEILSGAKSSTELQQLER 62
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
L +GL L++D+ +DF +AGIYR AR G+T+R + DCLIAA+A+R A +VH D DFD
Sbjct 63 LTDGLIQLSLDNRLDFHHSAGIYREARSRGKTIRKLYDCLIAAVALRTDAVLVHCDRDFD 122
Query 121 VIARI 125
+A +
Sbjct 123 HLAEV 127
>gi|284990202|ref|YP_003408756.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284063447|gb|ADB74385.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=138
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/128 (40%), Positives = 79/128 (62%), Gaps = 2/128 (1%)
Query 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLERL 61
+L+D+S W+ + R +G + +L+ E R A + + +E+L+G D+ L R
Sbjct 7 VLVDSSVWIAFLRDSGGPEVDLLEQLIDER--RAATTDVVLLEVLAGTTDEERAARLRRF 64
Query 62 VNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFDV 121
+ G L + +D AA ++RA RRAGET RS+NDCLIAA+A+RH ++HRD DF V
Sbjct 65 LAGAELLRQESPVDAEQAAALHRACRRAGETPRSLNDCLIAAVALRHDVPVLHRDRDFTV 124
Query 122 IARITNLQ 129
+A+ T+L+
Sbjct 125 LAQHTDLR 132
>gi|296166368|ref|ZP_06848803.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898278|gb|EFG77849.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=136
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/136 (45%), Positives = 81/136 (60%), Gaps = 3/136 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL DTSAWVEY RATGS + L+ +E +A+ EP+ ME+ +GA D+ L R
Sbjct 1 MILADTSAWVEYDRATGSAVDRRLTGLIRDEGP-LAVTEPVIMEVTAGARTDDREADLRR 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
L+ L+ D A DF AA IYR RRAG T R + DC+IA++A RHGA ++ D D
Sbjct 60 LLLRFKLLHFDTAADFDAAVRIYRNCRRAGITPRGLVDCMIASVAWRHGATLLAHDLDVY 119
Query 121 VIARIT--NLQAASFR 134
+A++ L AS R
Sbjct 120 RLAKVAGIGLDGASLR 135
>gi|258592453|emb|CBE68762.1| PilT-like protein [NC10 bacterium 'Dutch sediment']
Length=132
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/132 (38%), Positives = 71/132 (54%), Gaps = 1/132 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS WV++ R S + RL+ +EA I++ E I EIL G D +
Sbjct 1 MILVDTSVWVDFLRGEDSSQRWVLHRLIEDEAD-ISITEIIFTEILQGIKHDGEFQAIRD 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ P D + AA IYR R+ G+TVR DC+IAA+ I + ++H+D+DFD
Sbjct 60 YLLEFPIYRPKDIETYLHAARIYRDCRKKGKTVRKTVDCIIAAICIENDLTLLHKDSDFD 119
Query 121 VIARITNLQAAS 132
+I T LQA
Sbjct 120 LIQACTGLQAVE 131
>gi|292491388|ref|YP_003526827.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
gi|291579983|gb|ADE14440.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
Length=133
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/134 (37%), Positives = 75/134 (56%), Gaps = 2/134 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M L+DTS W+++FR + V+ + + +A+C I EIL G DD T + +
Sbjct 1 MTLVDTSVWIDFFRGH-DLPHVQRLEEIIGQGEDLALCGVILTEILQGIRDDQTFSRTQT 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ L L + ++ F AA IYR R G T+R DC+IAA A+ HGA ++H D DF+
Sbjct 60 RLEPLLLLPMTQSV-FIQAAIIYRGLRAKGMTIRKPVDCMIAATALEHGAWLLHNDRDFE 118
Query 121 VIARITNLQAASFR 134
IAR L++++ R
Sbjct 119 AIARHYPLRSSNLR 132
>gi|337281343|ref|YP_004620815.1| hypothetical protein Rta_36800 [Ramlibacter tataouinensis TTB310]
gi|334732420|gb|AEG94796.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=131
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 76/132 (58%), Gaps = 3/132 (2%)
Query 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLERL 61
++ D+SAW+EY RATGS A + +R+ L E + M + I E+L GA + L+ +
Sbjct 1 MIADSSAWIEYLRATGSAAHLRLRQAL-ERLQPVLMLDVIYQEVLQGAGNLQQFMQLQVM 59
Query 62 VNGLPSLNVDDAIDF-RAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
++ PS D + R AA ++ R +G T RS NDCLIAA AI G ++H D DF+
Sbjct 60 LDAAPSWMPSDPCETARQAALLFARCRWSGITPRSPNDCLIAACAIEAGEPLLHADRDFE 119
Query 121 VIARI-TNLQAA 131
+IA I LQ A
Sbjct 120 LIASIEPQLQLA 131
>gi|149197028|ref|ZP_01874081.1| PilT protein-like protein [Lentisphaera araneosa HTCC2155]
gi|149140138|gb|EDM28538.1| PilT protein-like protein [Lentisphaera araneosa HTCC2155]
Length=129
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 71/128 (56%), Gaps = 2/128 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+L+DTS W+++F + + +++ +S IA+C I E+L G + + ++
Sbjct 1 MVLVDTSVWIDFFNSQENEKVSQLKEAISNNE-DIAICGVILTEVLQGIKNKKEYELVKE 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ L L ++ I F AA IYR R+AG T+R DC+IA++A+ + ++H D DFD
Sbjct 60 IFESLSYLEMNKII-FTDAANIYRNLRKAGITIRKPVDCMIASVAMNYKIALIHNDKDFD 118
Query 121 VIARITNL 128
I NL
Sbjct 119 PIEEKLNL 126
>gi|91789943|ref|YP_550895.1| PilT protein-like protein [Polaromonas sp. JS666]
gi|91699168|gb|ABE45997.1| PilT protein-like protein [Polaromonas sp. JS666]
Length=140
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/127 (35%), Positives = 72/127 (57%), Gaps = 7/127 (5%)
Query 1 MILIDTSAWVEYFRA--TGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTL 58
M+LID+S W+++ R T ++ V+ R E +A+ + I +E+L G +
Sbjct 1 MLLIDSSVWIDWLRGSDTDAVRFVQAR----EGQEELALTQMIYLEVLQGVSSERQFAVT 56
Query 59 ERLVNGLPSL-NVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDA 117
++++ L +D+ F AAA +YR AR+ G T+R DCLIAA+A+ GA +VH D
Sbjct 57 QKILGAQTMLLPLDELETFAAAAQLYRQARQQGLTIRKSTDCLIAAIALEQGALLVHNDR 116
Query 118 DFDVIAR 124
DF +A+
Sbjct 117 DFLALAQ 123
>gi|312888376|ref|ZP_07747952.1| PilT protein domain protein [Mucilaginibacter paludis DSM 18603]
gi|311299210|gb|EFQ76303.1| PilT protein domain protein [Mucilaginibacter paludis DSM 18603]
Length=133
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/123 (34%), Positives = 65/123 (53%), Gaps = 2/123 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
+IL+DTS WV +F+ + +++ +++ LS +A C I E+L G D ++
Sbjct 3 IILVDTSVWVNFFKGNSTRSSLHLKQSLSN--TLVATCPTIVQEVLQGVRLDQDFAKIKS 60
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ + L D +A +YR R G T+R NDCLIA AI++ ++H D DFD
Sbjct 61 MFDETMQLREDQYQLSIESAILYRKLRSVGVTIRKPNDCLIATYAIKNNLAVLHDDKDFD 120
Query 121 VIA 123
IA
Sbjct 121 FIA 123
>gi|153876449|ref|ZP_02003764.1| PilT-like protein [Beggiatoa sp. PS]
gi|152067086|gb|EDN66235.1| PilT-like protein [Beggiatoa sp. PS]
Length=130
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/124 (34%), Positives = 68/124 (55%), Gaps = 2/124 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M L+D+SAW+++FR ++ L+ + +A+C I EIL G D+N + +
Sbjct 1 MTLVDSSAWIDFFRCQNLQHVTRLKSLIHQNE-ELAICGVIMTEILQGIRDENQYQMTKT 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
++ L L + + AA IYR R G T+R DC+IA++A+ + ++H D DF+
Sbjct 60 RLDTLIFLPMTRT-TYVTAANIYRTLRNKGLTIRKSIDCMIASVALENNVFLLHNDRDFE 118
Query 121 VIAR 124
IAR
Sbjct 119 AIAR 122
>gi|298531198|ref|ZP_07018599.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509221|gb|EFI33126.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=133
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/132 (32%), Positives = 70/132 (54%), Gaps = 2/132 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+ +DT+ W+++F V + L+ +E +++C I E+L G D
Sbjct 1 MVFVDTTVWIDFFADLDQPHVVTLSELIEQEED-LSLCGIILAEVLQGIRSDKDFIKTRE 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ GL L + A RAA +YR+ R+ G T+R DC+IA++A+ + ++H D DFD
Sbjct 60 YLGGLVFLPMGQATFLRAAE-VYRSLRKKGVTIRKPVDCMIASVAMEYDICLLHNDRDFD 118
Query 121 VIARITNLQAAS 132
IAR + L+ S
Sbjct 119 HIARHSGLRVFS 130
>gi|340627019|ref|YP_004745471.1| hypothetical protein MCAN_20301 [Mycobacterium canettii CIPT
140010059]
gi|340005209|emb|CCC44362.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=132
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 73/127 (58%), Gaps = 13/127 (10%)
Query 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
+++DTS W+EY + S+A+ R L++ A + + E + ME+L G D+++
Sbjct 1 MIVDTSVWIEYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGTTDEDSAALR 56
Query 59 ERLVNGL---PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
RL+ P V DA D AA I+R RR G+TVRS+ DC +AA+A+R G + HR
Sbjct 57 RRLLQRFTIEPLAPVRDAED---AAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHR 113
Query 116 DADFDVI 122
D D++ I
Sbjct 114 DRDYEAI 120
>gi|220906591|ref|YP_002481902.1| PilT protein domain-containing protein [Cyanothece sp. PCC 7425]
gi|219863202|gb|ACL43541.1| PilT protein domain protein [Cyanothece sp. PCC 7425]
Length=132
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/142 (36%), Positives = 74/142 (53%), Gaps = 19/142 (13%)
Query 1 MILIDTSAWVEYFR-ATGSIAAVEVRRLLSE--EAARIAMCEPIAMEILSGALDDNTHTT 57
M+LIDTS W+ FR TG +VR+ L + + + +E+L G+L++ T
Sbjct 1 MLLIDTSVWISVFRDRTG-----QVRQKLETLIDNREVLLTRFTELELLQGSLNEKEWTL 55
Query 58 LERLVNGLPSLNVDDAID-----FRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARI 112
L + L D ++ ++AAA IY RR G TVRS DC IA A+ H +
Sbjct 56 LSKY------LETQDYVEPASNSWQAAARIYHDLRRQGLTVRSPIDCCIAQAALEHDLLL 109
Query 113 VHRDADFDVIARITNLQAASFR 134
VH D DF+ IA++ +LQ F+
Sbjct 110 VHNDRDFETIAQVRSLQHFRFQ 131
>gi|254411087|ref|ZP_05024865.1| hypothetical protein MC7420_565 [Microcoleus chthonoplastes PCC
7420]
gi|196182442|gb|EDX77428.1| hypothetical protein MC7420_565 [Microcoleus chthonoplastes PCC
7420]
Length=132
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/134 (33%), Positives = 72/134 (54%), Gaps = 3/134 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+LIDTS W+ FR ++ L+++ I + +E+L G+L++ T L
Sbjct 1 MLLIDTSVWISVFRDRSGQVRQQLETLIADR--EILLTRFTQLELLQGSLNEQEWTILST 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ + + + ++AAA IY RR G TVRS DC IA A+ + ++H D DF+
Sbjct 59 YLEAQDYVELTSS-SWQAAARIYYDLRRQGLTVRSPIDCCIAQAALENDLLLIHNDRDFE 117
Query 121 VIARITNLQAASFR 134
+IA++ +LQ F+
Sbjct 118 IIAQVRDLQNLRFQ 131
>gi|15609147|ref|NP_216526.1| hypothetical protein Rv2010 [Mycobacterium tuberculosis H37Rv]
gi|15841492|ref|NP_336529.1| hypothetical protein MT2065 [Mycobacterium tuberculosis CDC1551]
gi|31793190|ref|NP_855683.1| hypothetical protein Mb2033 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=132
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 72/127 (57%), Gaps = 13/127 (10%)
Query 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
+++DTS W+ Y + S+A+ R L++ A + + E + ME+L G D++T
Sbjct 1 MIVDTSVWIAYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
Query 59 ERLVNGL---PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
RL+ P V DA D AA I+R RR G+TVRS+ DC +AA+A+R G + HR
Sbjct 57 RRLLQRFAIEPLAPVRDAED---AAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHR 113
Query 116 DADFDVI 122
D D++ I
Sbjct 114 DRDYEAI 120
>gi|166368977|ref|YP_001661250.1| hypothetical protein MAE_62360 [Microcystis aeruginosa NIES-843]
gi|166091350|dbj|BAG06058.1| hypothetical protein MAE_62360 [Microcystis aeruginosa NIES-843]
Length=132
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/139 (34%), Positives = 70/139 (51%), Gaps = 13/139 (9%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+LIDTS W+ FR ++ L++ I + +E+L G+L++ T L
Sbjct 1 MLLIDTSVWISVFRDRSGQVRQQLETLIANRE--ILLTRFTQLELLQGSLNEQEWTILS- 57
Query 61 LVNGLPSLNVDDAIDFR-----AAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
L V D ++ R AAA IY RR G TVRS DC IA A+ + ++H
Sbjct 58 -----TYLEVQDYVELRPSSWQAAARIYYDLRRQGLTVRSPIDCCIAQAALENDLLLIHN 112
Query 116 DADFDVIARITNLQAASFR 134
D DF+ IA++ +LQ F+
Sbjct 113 DRDFETIAQVRSLQNLRFQ 131
>gi|206890799|ref|YP_002249460.1| PIN domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742737|gb|ACI21794.1| PIN domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length=136
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/130 (30%), Positives = 67/130 (52%), Gaps = 1/130 (0%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+++DTS W+++ R + A +R L++ E + EIL G DD H +
Sbjct 1 MLIVDTSVWIDFLRGEKTKACETLRELINSEEEIYITEIILT-EILQGIKDDKLHHITKE 59
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ L + A+ I+R ++ G+TVR DC+IA++AI + A I+H+D D++
Sbjct 60 YLLYFQILRPKGIETYIRASEIFRNCKKKGKTVRKTIDCIIASIAIENRATIIHKDHDYE 119
Query 121 VIARITNLQA 130
I + L+
Sbjct 120 TIREFSELKT 129
>gi|258590929|emb|CBE67224.1| PilT protein-like (fragment) [NC10 bacterium 'Dutch sediment']
Length=134
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/128 (37%), Positives = 72/128 (57%), Gaps = 5/128 (3%)
Query 2 ILIDTSAWVEYFRATGSIAA-VEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
+LIDTSAW+ R +G A EVRRLL+E R+A CE I +E+ +G + + L
Sbjct 6 VLIDTSAWIHALRPSGDPAVRQEVRRLLTE--GRVATCEMIILELAAGTRTEAEYRELRE 63
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ L + +++ +R+A GI RR G +V S D LIAA+A+ + ++H D FD
Sbjct 64 DLEALQRFPITESV-WRSAYGIAHTIRREGLSVPS-TDHLIAAVALSYRCHLLHCDKHFD 121
Query 121 VIARITNL 128
++ R L
Sbjct 122 LMTRHIGL 129
>gi|344199677|ref|YP_004784003.1| PilT protein domain-containing protein [Acidithiobacillus ferrivorans
SS3]
gi|343775121|gb|AEM47677.1| PilT protein domain protein [Acidithiobacillus ferrivorans SS3]
Length=137
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/126 (37%), Positives = 65/126 (52%), Gaps = 3/126 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+L+DT+ W+ R + ++R+LL + A ++ I E+L GA L
Sbjct 1 MVLVDTTIWIALLRGHANAQVEQLRQLLLDGEALVSPV--ILQELLQGAASPEQMEKLRA 58
Query 61 LVNGLPSLNVDDAIDFRAAAG-IYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
LP L DA+ AAG +Y R G T RS +DCLIA AI HG ++H D DF
Sbjct 59 HFLRLPILISKDAVATHLAAGALYARCRWNGITPRSPHDCLIAQTAIEHGVPLLHDDRDF 118
Query 120 DVIARI 125
+ IA+I
Sbjct 119 EQIAQI 124
>gi|189499212|ref|YP_001958682.1| PilT protein domain-containing protein [Chlorobium phaeobacteroides
BS1]
gi|189494653|gb|ACE03201.1| PilT protein domain protein [Chlorobium phaeobacteroides BS1]
Length=135
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/134 (35%), Positives = 70/134 (53%), Gaps = 5/134 (3%)
Query 1 MILIDTSAWVEYFR-ATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLE 59
MIL+DTS W++ R TG + R+ E + +C +E+L GA + L+
Sbjct 1 MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSV---LCRFTQLELLQGAKSEEDWKLLD 57
Query 60 RLVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
++ L + + AA I+ RR G TVRS DC IA +A+ H A ++H+DADF
Sbjct 58 GHLSSQLYLEATERT-WSDAARIFFELRRKGITVRSSVDCCIAQIALEHDAILLHKDADF 116
Query 120 DVIARITNLQAASF 133
D IA + L++ F
Sbjct 117 DRIASVRPLRSEWF 130
>gi|284038008|ref|YP_003387938.1| PilT protein domain protein [Spirosoma linguale DSM 74]
gi|283817301|gb|ADB39139.1| PilT protein domain protein [Spirosoma linguale DSM 74]
Length=130
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (35%), Positives = 70/133 (53%), Gaps = 7/133 (5%)
Query 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
+++DTS W++ FR S E RL++ A +I + I E+L G D+ + +
Sbjct 1 MIVDTSVWIDAFRGGQS----EQVRLVATYLAADRQIFITPTIVQEVLQGVRADDEYVLI 56
Query 59 ERLVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDAD 118
+ + L +D AA +YR+ R+ G T+R NDCLIA AI + ++H DAD
Sbjct 57 KEGILAHSILRLDPVEAAIGAADLYRSLRKKGVTIRKPNDCLIAHYAIFYDIPVLHHDAD 116
Query 119 FDVIARITNLQAA 131
FD IA T L+ A
Sbjct 117 FDQIASHTALRIA 129
>gi|209526513|ref|ZP_03275039.1| PilT protein domain protein [Arthrospira maxima CS-328]
gi|209493019|gb|EDZ93348.1| PilT protein domain protein [Arthrospira maxima CS-328]
Length=135
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/138 (35%), Positives = 65/138 (48%), Gaps = 11/138 (7%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M LIDTS W+ R + ++ E+ I + ME+L G D+ LE
Sbjct 1 MFLIDTSVWIAVLRDKTGTVGQSLSEIIKEQP--IFLSRFTQMELLQGCRDEREWRLLET 58
Query 61 LVNGL----PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRD 116
+ P+ N + AAA IY +R G TVRS DC IA LAI H ++H D
Sbjct 59 YLQDQDYIEPTPNT-----WVAAARIYYDLQRQGLTVRSSIDCCIAQLAIAHQLILIHND 113
Query 117 ADFDVIARITNLQAASFR 134
DF+ IA T+L + FR
Sbjct 114 RDFETIATATSLNSLRFR 131
>gi|284054545|ref|ZP_06384755.1| PilT protein domain protein [Arthrospira platensis str. Paraca]
gi|291571050|dbj|BAI93322.1| PIN domain protein [Arthrospira platensis NIES-39]
Length=135
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/138 (35%), Positives = 65/138 (48%), Gaps = 11/138 (7%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M LIDTS W+ FR + ++ E+ I + ME+L G + LE
Sbjct 1 MFLIDTSVWIAVFRDKTGTVGQSLSEIIKEQP--IFLSRFTQMELLQGCRYEREWRLLET 58
Query 61 LVNGL----PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRD 116
+ P+ N + AAA IY +R G TVRS DC IA LAI H ++H D
Sbjct 59 YLQDQDYIEPTPNT-----WVAAARIYYDLQRQGLTVRSSIDCCIAQLAIAHQLILIHND 113
Query 117 ADFDVIARITNLQAASFR 134
DF+ IA T+L + FR
Sbjct 114 RDFETIATATSLNSLRFR 131
>gi|326798941|ref|YP_004316760.1| twitching mobility protein PilT [Sphingobacterium sp. 21]
gi|326549705|gb|ADZ78090.1| PilT protein domain protein [Sphingobacterium sp. 21]
Length=137
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/129 (32%), Positives = 68/129 (53%), Gaps = 3/129 (2%)
Query 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEP-IAMEILSGALDDNTHTTLER 60
+L DTS WV++ + A+ ++ + E R + P I EIL G +D+T+T ++
Sbjct 5 LLFDTSVWVDFLNKNDTPQALLLQEYI--ETDREVLLTPTIVQEILQGIREDSTYTEIKE 62
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
++ L + AA ++R+ R+ G T+R ND LIA A+ +VH D DFD
Sbjct 63 ALSYFTLLELPPRRAAIGAADLFRSLRKKGVTIRKSNDYLIAYYAVSFSVPLVHTDRDFD 122
Query 121 VIARITNLQ 129
I++ + L+
Sbjct 123 HISKYSKLK 131
>gi|42525796|ref|NP_970894.1| PilT domain-containing protein [Treponema denticola ATCC 35405]
gi|41815846|gb|AAS10775.1| PIN domain protein [Treponema denticola ATCC 35405]
Length=133
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/133 (36%), Positives = 68/133 (52%), Gaps = 3/133 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS + +FR ++ +L+ EE + E I EIL GA D+ L+
Sbjct 1 MILVDTSVLINFFRGRKTVGTTYFEKLIEEEK-HFCINEFIYQEILQGAKDEKEFAILKS 59
Query 61 LVNGLPSLNVDDAID-FRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
+ +P ++ I F AA + RR G T+RS D LIA AI + ++H D DF
Sbjct 60 YLIDVPLYSLRLGIQSFENAALLNFRCRRKGFTIRSTVDLLIAETAIENNIPLLHDDDDF 119
Query 120 DVIAR-ITNLQAA 131
IA+ IT L+ A
Sbjct 120 VKIAKIITELKLA 132
>gi|17229688|ref|NP_486236.1| hypothetical protein all2196 [Nostoc sp. PCC 7120]
gi|17131287|dbj|BAB73895.1| all2196 [Nostoc sp. PCC 7120]
Length=132
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/136 (33%), Positives = 69/136 (51%), Gaps = 7/136 (5%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+LIDTS W+ FR ++ L++E + + +E+L G+L++ T L
Sbjct 1 MLLIDTSVWIGVFRDRSDQVRQQLETLIAERE--VLLTRFTQLELLQGSLNEQEWTLLST 58
Query 61 LV--NGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDAD 118
+ L V ++AAA IY RR G VRS DC IA +A+ + ++H D D
Sbjct 59 YLETQNYVELTVQS---WQAAARIYFDLRRQGLIVRSPIDCCIAQVALENNLLLIHNDRD 115
Query 119 FDVIARITNLQAASFR 134
F+ IA++ LQ F+
Sbjct 116 FETIAQVRALQHLRFQ 131
>gi|77165012|ref|YP_343537.1| PilT-like protein [Nitrosococcus oceani ATCC 19707]
gi|254434393|ref|ZP_05047901.1| hypothetical protein NOC27_1324 [Nitrosococcus oceani AFC27]
gi|76883326|gb|ABA58007.1| PilT-like protein [Nitrosococcus oceani ATCC 19707]
gi|207090726|gb|EDZ67997.1| hypothetical protein NOC27_1324 [Nitrosococcus oceani AFC27]
Length=135
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/127 (34%), Positives = 65/127 (52%), Gaps = 8/127 (6%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS W+++ R + + R+L + + I EIL GA ++ +L
Sbjct 1 MILVDTSVWIDFLRDRDTPGTQALNRILDRDYP-FGITGIIYQEILQGA---DSPKSLRV 56
Query 61 LVNGLPSLNVDDAID----FRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRD 116
LV+ + +D +R AA IY RR G T+RS DCLIA +A+ H ++H D
Sbjct 57 LVDYFATQRFYHPLDKVDTYRRAAEIYGHCRRNGVTIRSTVDCLIAQIALEHNLFLLHSD 116
Query 117 ADFDVIA 123
DF ++
Sbjct 117 RDFQLMK 123
>gi|94968019|ref|YP_590067.1| PilT protein-like [Candidatus Koribacter versatilis Ellin345]
gi|94550069|gb|ABF39993.1| PilT protein-like protein [Candidatus Koribacter versatilis Ellin345]
Length=131
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/131 (33%), Positives = 65/131 (50%), Gaps = 6/131 (4%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAAR--IAMCEPIAMEILSGALDDNTHTTL 58
MI++D++ W++YFRA + L E+AR +A+ + I E+L DD + +
Sbjct 1 MIVVDSTVWIDYFRAVPNPHT----NWLDRESARQPLAITDLILCEVLQVIRDDVMYRRV 56
Query 59 ERLVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDAD 118
+R + + A AA YR R G T+RS D LIA + G ++HRD D
Sbjct 57 QRDLCRFTVFDSGGATLATKAAANYRLLRSKGFTIRSTIDSLIATFCLSTGYSLIHRDRD 116
Query 119 FDVIARITNLQ 129
FD R+ LQ
Sbjct 117 FDCFERVLGLQ 127
>gi|88811564|ref|ZP_01126818.1| PilT-like protein [Nitrococcus mobilis Nb-231]
gi|88790955|gb|EAR22068.1| PilT-like protein [Nitrococcus mobilis Nb-231]
Length=137
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/129 (38%), Positives = 63/129 (49%), Gaps = 8/129 (6%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M LIDTS W++ FR + A +R LL + + I E+L GA N+ +
Sbjct 1 MYLIDTSVWIDLFRQRDTGPARMLRVLLDQRLP-YGITGVIYQEVLQGA---NSERDFKH 56
Query 61 LVNGLPSLNVDDAIDF----RAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRD 116
L N L S DF AA +Y R G TVRS DCLIA +AI H ++H D
Sbjct 57 LRNYLGSQRFYHPTDFVRSHAEAAHLYVRCRHQGITVRSTIDCLIARIAIEHKLLLLHND 116
Query 117 ADFDVIARI 125
D+ +ARI
Sbjct 117 NDYLHLARI 125
>gi|146296532|ref|YP_001180303.1| PilT domain-containing protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410108|gb|ABP67112.1| PilT protein domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length=132
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/126 (28%), Positives = 66/126 (53%), Gaps = 2/126 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS ++YF+ + ++ ++S +C + EIL GA D+ L+
Sbjct 1 MILVDTSVLIDYFKGNANEKVEKLHYVISNNIP-FGICNIVYQEILQGAKDEKEFKLLKE 59
Query 61 LVNGLPSLNVDDAID-FRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
++ ++ + + + AA +Y ++ G ++RS D +IA +AI +G ++H D DF
Sbjct 60 YLSSQRFYDLKNGKESYEKAAELYFKCKKKGISIRSTIDVIIAQIAIENGLLLLHNDKDF 119
Query 120 DVIARI 125
IA +
Sbjct 120 SQIALV 125
>gi|257456425|ref|ZP_05621621.1| PIN domain protein [Treponema vincentii ATCC 35580]
gi|257446085|gb|EEV21132.1| PIN domain protein [Treponema vincentii ATCC 35580]
Length=133
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/126 (33%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M+L+DTS + +FR ++ +LL E + E I E+L G+ D+ L+
Sbjct 1 MVLVDTSVLINFFRGKETVGTAYFEKLL-EAQKHFCINEFIYQELLQGSKDEKEFAVLKS 59
Query 61 LVNGLPSLNVDDAID-FRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
+ +P ++ I F AA + RR G T+RS D LIA AI + ++H D DF
Sbjct 60 YLMDVPLYSLKRGIQSFENAALLNFRCRRKGVTIRSTVDLLIAETAIENNIPLLHDDDDF 119
Query 120 DVIARI 125
+ARI
Sbjct 120 TNMARI 125
>gi|328947662|ref|YP_004364999.1| PilT protein domain protein [Treponema succinifaciens DSM 2489]
gi|328447986|gb|AEB13702.1| PilT protein domain protein [Treponema succinifaciens DSM 2489]
Length=133
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/133 (34%), Positives = 70/133 (53%), Gaps = 3/133 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS + +FR + + L+SEE + E I E+L G+ ++ +TL+
Sbjct 1 MILVDTSVLINFFRGRETAGTRYLEALISEEKP-FCINEFIYQELLQGSKNEKEFSTLKS 59
Query 61 LVNGLPSLNVDDAID-FRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
+ +P ++ I + AA + RR G T+RS D LIA AI + ++H D DF
Sbjct 60 YLGEIPLYSLKLGIQSYENAAILNLKCRRKGVTIRSTVDLLIAETAIENNIPLLHDDEDF 119
Query 120 DVIAR-ITNLQAA 131
+AR IT L+ A
Sbjct 120 VNMARVITELKLA 132
>gi|335034129|ref|ZP_08527490.1| hypothetical protein AGRO_1469 [Agrobacterium sp. ATCC 31749]
gi|333794447|gb|EGL65783.1| hypothetical protein AGRO_1469 [Agrobacterium sp. ATCC 31749]
Length=129
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/130 (31%), Positives = 67/130 (52%), Gaps = 4/130 (3%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MI+ DTSAW+ + R + + R L+++ + + + I +E+L GA D LE+
Sbjct 1 MIVADTSAWISFIRKDAPALSAKFRALMAQ--GEVLIGDIILLEVLRGARDGYHARHLEQ 58
Query 61 LVNGLPSL-NVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADF 119
+++ P + + + +AAA YR R G T+R ND +I I HG +++ D DF
Sbjct 59 MLSEFPCVAMMSPQLAIKAAAN-YRFLRGRGYTIRKSNDLIIGTYCIEHGHKLLQNDRDF 117
Query 120 DVIARITNLQ 129
+A LQ
Sbjct 118 QPMADHLGLQ 127
>gi|256830294|ref|YP_003159022.1| twitching motility protein PilT [Desulfomicrobium baculatum DSM
4028]
gi|256579470|gb|ACU90606.1| PilT protein domain protein [Desulfomicrobium baculatum DSM 4028]
Length=131
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/134 (36%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MI+ DTSAW++YFR + + R LS +RI + + I E+L G + +
Sbjct 1 MIVADTSAWIDYFRGVIAPHTEVLDRELSR--SRIIIGDLIMTELLQGFSGEKDFQMARQ 58
Query 61 LVNGLPSLNV---DDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDA 117
L+ L ++ D AI AAA YR RR G TVR D LIA I +G ++H D
Sbjct 59 LMESLEYRDLVGRDVAI---AAAQNYRILRRKGITVRKTIDVLIATFCIENGFDLIHNDR 115
Query 118 DFDVIARITNLQAA 131
DFD + + L+
Sbjct 116 DFDPMEHVLGLKVV 129
>gi|308270311|emb|CBX26923.1| hypothetical protein N47_A09520 [uncultured Desulfobacterium
sp.]
Length=137
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/125 (35%), Positives = 63/125 (51%), Gaps = 3/125 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL DTS W+ R G R+ + E I I +E+L GA D+ L+
Sbjct 1 MILADTSVWIHILRDKGGKMVQAFRKKTASEI--IVFSRFIQIELLQGAKDEFEWKRLDD 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
++ L ++ ++ AA IY R++G TV S DC IA +A+ A ++HRD DF+
Sbjct 59 YLSSQYYLETNENT-WKHAARIYFELRKSGITVSSTIDCCIACIAMEAKALLLHRDHDFE 117
Query 121 VIARI 125
IA I
Sbjct 118 KIAGI 122
>gi|86357278|ref|YP_469170.1| hypothetical protein RHE_CH01644 [Rhizobium etli CFN 42]
gi|86281380|gb|ABC90443.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length=170
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/135 (36%), Positives = 71/135 (53%), Gaps = 10/135 (7%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLS-EEAARIAMCEPIAMEILSGALDDNTHTTLE 59
+I++D+S W+ + R + A RRL + E+ I + + I ME+L GA DD TT+E
Sbjct 42 VIVVDSSVWIAHLRGIENAAR---RRLQNIEDPLEILVGDLILMEVLQGARDDRHATTIE 98
Query 60 ---RLVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRD 116
R P L DD++ RAA YR R G T+R D +I I+ G ++H D
Sbjct 99 ANLRQFTIRPML--DDSLAVRAARN-YRLLRERGITMRKTIDVIIGTFCIQEGHSLLHDD 155
Query 117 ADFDVIARITNLQAA 131
DFD +A+ L+ A
Sbjct 156 RDFDPMAQHLGLKIA 170
>gi|330990376|ref|ZP_08314341.1| hypothetical protein SXCC_00294 [Gluconacetobacter sp. SXCC-1]
gi|329762556|gb|EGG79035.1| hypothetical protein SXCC_00294 [Gluconacetobacter sp. SXCC-1]
Length=130
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (32%), Positives = 65/132 (50%), Gaps = 2/132 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+D+S W+++FR T + + RLL EE +A+ + + E+L G + T R
Sbjct 1 MILVDSSVWIDFFRGTVTPQVDVLDRLLGEEP--VAIGDLMMTEVLQGFASERDFNTARR 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
++ L + + AA +R R G T+R D LIA I G R+++ D DFD
Sbjct 59 MLGALDLVEIGGRDVMIEAARYFRDLRGRGITIRKTIDTLIATRCIVSGYRLLYSDRDFD 118
Query 121 VIARITNLQAAS 132
L+ A+
Sbjct 119 PFVTHLGLERAA 130
>gi|334346320|ref|YP_004554872.1| PilT protein domain-containing protein [Sphingobium chlorophenolicum
L-1]
gi|334102942|gb|AEG50366.1| PilT protein domain protein [Sphingobium chlorophenolicum L-1]
Length=130
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/130 (34%), Positives = 60/130 (47%), Gaps = 2/130 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+D+S W+++FR T S A + LL +E I + I +EIL G + R
Sbjct 1 MILVDSSVWIDFFRGTASPQADLLDSLLGKEPLLIG--DLILVEILQGFTSERDFNQGHR 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
L+ L + + AA +R R G TVR D LIA I ++H D DFD
Sbjct 59 LLGSLEMIEIGGRDIAEQAARNFRTLRGLGVTVRKTIDTLIATRCIEASLALLHSDRDFD 118
Query 121 VIARITNLQA 130
LQA
Sbjct 119 PFTEHLGLQA 128
>gi|320105490|ref|YP_004181080.1| PilT protein domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319924011|gb|ADV81086.1| PilT protein domain protein [Terriglobus saanensis SP1PR4]
Length=131
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/132 (32%), Positives = 65/132 (50%), Gaps = 8/132 (6%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MI++DTS W++ R T + ++ +R L IA+ + E+L G + + +
Sbjct 1 MIVVDTSVWIDLLRGTENSESLWLREALGHRP--IALTDLTLCEVLQGI---SQKRSFDN 55
Query 61 LVNGLPSLNVDDAIDFR---AAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDA 117
+ L +L V + R AAA ++ RR G TVR DCLIA I ++HRD
Sbjct 56 ALKRLSTLKVYECCGPRMAIAAAANFQTLRRRGLTVRKTIDCLIATFCIEQKHTLLHRDR 115
Query 118 DFDVIARITNLQ 129
DFD + +L+
Sbjct 116 DFDAFEQHLDLK 127
>gi|325292385|ref|YP_004278249.1| hypothetical protein AGROH133_04984 [Agrobacterium sp. H13-3]
gi|325060238|gb|ADY63929.1| hypothetical protein AGROH133_04984 [Agrobacterium sp. H13-3]
Length=129
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/123 (31%), Positives = 63/123 (52%), Gaps = 2/123 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MI+ DTSAW+ R A+++R +++ + I + + + +E+L GA D LE+
Sbjct 1 MIVADTSAWISLIRKDSPALALKLRTAITQ--SNILVGDIVLLEVLQGARDGQHARRLEQ 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+++ P + + AA YR R G T+R ND +I I +G ++H D DF
Sbjct 59 MLSEFPCVAMMSPQLAIKAASNYRFLRGRGYTIRKNNDLIIGTYCIENGYELLHNDRDFQ 118
Query 121 VIA 123
+A
Sbjct 119 PMA 121
>gi|294341451|emb|CAZ89868.1| conserved hypothetical protein; putative PIN domain [Thiomonas
sp. 3As]
Length=132
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/131 (32%), Positives = 68/131 (52%), Gaps = 5/131 (3%)
Query 1 MILIDTSAWVEYF--RATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTL 58
MIL+D+S W+++F RAT +A + LL ++ A +A+ + + E+L G + +
Sbjct 1 MILVDSSVWIDFFNGRATSRVANLA---LLLDDMAPVAVADLVLFEVLRGFRHERDYLAA 57
Query 59 ERLVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDAD 118
+ + L + + + AA R R G T+RS D L AA I H ++H DAD
Sbjct 58 RKTLTALTVVEIGGEDNALQAAQHDRLLRAMGYTIRSAVDVLQAAYCIEHDYALLHNDAD 117
Query 119 FDVIARITNLQ 129
FDV+ + L+
Sbjct 118 FDVMEDLRGLK 128
>gi|340778973|ref|ZP_08698916.1| PilT protein domain-containing protein [Acetobacter aceti NBRC
14818]
Length=130
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/120 (32%), Positives = 61/120 (51%), Gaps = 2/120 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+D+S W+++FR T + + RLL EE +A+ + + E+L G ++ R
Sbjct 1 MILVDSSVWIDFFRGTVTPQVEVLDRLLGEEP--VAIGDLMMTEVLQGFANERDFNKARR 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
++ L + + AA +R R G T+R D LIA I G R+++ D DFD
Sbjct 59 MLGALDLVEIGGRDVMIEAARYFRDLRARGITIRKTIDTLIATRCIVSGYRLLYSDRDFD 118
>gi|296137153|ref|YP_003644395.1| PilT protein domain protein [Thiomonas intermedia K12]
gi|295797275|gb|ADG32065.1| PilT protein domain protein [Thiomonas intermedia K12]
Length=132
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/131 (32%), Positives = 68/131 (52%), Gaps = 5/131 (3%)
Query 1 MILIDTSAWVEYF--RATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTL 58
MIL+D+S W+++F RAT +A + LL ++ A +A+ + + E+L G + +
Sbjct 1 MILVDSSVWIDFFNGRATPRVANLA---LLLDDMAPVAVADLVLFEVLRGFRHERDYLAA 57
Query 59 ERLVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDAD 118
+ + L + + + AA R R G T+RS D L AA I H ++H DAD
Sbjct 58 RKTLTALTVVEIGGEDNALQAAQHDRLLRAMGYTIRSAVDVLQAAYCIEHDYALLHNDAD 117
Query 119 FDVIARITNLQ 129
FDV+ + L+
Sbjct 118 FDVMEDLRGLK 128
>gi|37522468|ref|NP_925845.1| hypothetical protein gll2899 [Gloeobacter violaceus PCC 7421]
gi|35213469|dbj|BAC90840.1| gll2899 [Gloeobacter violaceus PCC 7421]
Length=133
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/133 (33%), Positives = 60/133 (46%), Gaps = 3/133 (2%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
M L+DTS WV R +A R++ +E + + ME+L G D L+
Sbjct 1 MFLVDTSVWVSILRDRTGMARECFERVVGDEP--VFLSRFTQMELLQGCRDQREWVLLQT 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
+ + + + AA IY RR G TVRS DC IA LAI +VH D DF+
Sbjct 59 HLQEQDYAELSEYA-WTQAARIYYDLRRRGLTVRSSIDCCIAQLAIERRLALVHSDRDFE 117
Query 121 VIARITNLQAASF 133
I ++ L F
Sbjct 118 AIQQVRALSCVRF 130
>gi|331006113|ref|ZP_08329447.1| PilT protein domain protein [gamma proteobacterium IMCC1989]
gi|330420092|gb|EGG94424.1| PilT protein domain protein [gamma proteobacterium IMCC1989]
Length=134
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (50%), Gaps = 2/120 (1%)
Query 1 MILIDTSAWVEYFRATGSIAAVEVRRLLSEEAARIAMCEPIAMEILSGALDDNTHTTLER 60
MIL+DTS W++YF + + L E +A+ + I +EIL G +D + L+
Sbjct 1 MILVDTSVWIDYFNGNDNKYTEYLDGALIE--GNVALGDLIFLEILQGIREDKEYKRLKS 58
Query 61 LVNGLPSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHRDADFD 120
L+ L + D A YR+ R+ G +R D +IA I++ +++ D DFD
Sbjct 59 LLGRLDQYTLFDKDMVAHCADHYRSLRKKGIIIRKTADVIIATFCIQNHIPLLYTDKDFD 118
Lambda K H
0.325 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924441710
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40