BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1573

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608711|ref|NP_216089.1|  phiRV1 phage protein [Mycobacterium...   273    5e-72
gi|306809485|ref|ZP_07446153.1|  hypothetical protein TMGG_03958 ...   271    2e-71
gi|289569611|ref|ZP_06449838.1|  conserved hypothetical protein [...   244    2e-63
gi|289750142|ref|ZP_06509520.1|  phiRv1 phage protein [Mycobacter...   103    7e-21
gi|308173804|ref|YP_003920509.1|  iturin A synthetase A [Bacillus...  35.4    2.8  
gi|341827505|gb|AEK88756.1|  bacillomycin D synthetase A [Bacillu...  35.4    2.9  
gi|328553269|gb|AEB23761.1|  iturin A synthetase A [Bacillus amyl...  35.4    2.9  
gi|55376536|ref|YP_134388.1|  hypothetical protein pNG6142 [Haloa...  35.4    3.2  
gi|325473673|gb|EGC76862.1|  translocase subunit secA [Treponema ...  34.3    7.1  
gi|42527403|ref|NP_972501.1|  preprotein translocase subunit SecA...  34.3    7.1  


>gi|15608711|ref|NP_216089.1| phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|15843078|ref|NP_338115.1| hypothetical protein MT3573.15 [Mycobacterium tuberculosis CDC1551]
 gi|31792759|ref|NP_855252.1| phiRV1 phage protein [Mycobacterium bovis AF2122/97]
 37 more sequence titles
 
gi|148661368|ref|YP_001282891.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|167967375|ref|ZP_02549652.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289443026|ref|ZP_06432770.1| phi phage protein [Mycobacterium tuberculosis T46]
 gi|289447183|ref|ZP_06436927.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|289569607|ref|ZP_06449834.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289753661|ref|ZP_06513039.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|306775761|ref|ZP_07414098.1| hypothetical protein TMAG_02900 [Mycobacterium tuberculosis SUMu001]
 gi|306782548|ref|ZP_07420885.1| hypothetical protein TMBG_03943 [Mycobacterium tuberculosis SUMu002]
 gi|306786368|ref|ZP_07424690.1| hypothetical protein TMCG_02629 [Mycobacterium tuberculosis SUMu003]
 gi|306790737|ref|ZP_07429059.1| hypothetical protein TMDG_03223 [Mycobacterium tuberculosis SUMu004]
 gi|306795266|ref|ZP_07433568.1| hypothetical protein TMEG_03861 [Mycobacterium tuberculosis SUMu005]
 gi|306799454|ref|ZP_07437756.1| hypothetical protein TMFG_03044 [Mycobacterium tuberculosis SUMu006]
 gi|306805299|ref|ZP_07441967.1| hypothetical protein TMHG_04006 [Mycobacterium tuberculosis SUMu008]
 gi|306969594|ref|ZP_07482255.1| hypothetical protein TMIG_03753 [Mycobacterium tuberculosis SUMu009]
 gi|306971868|ref|ZP_07484529.1| hypothetical protein TMJG_03005 [Mycobacterium tuberculosis SUMu010]
 gi|307079587|ref|ZP_07488757.1| hypothetical protein TMKG_02079 [Mycobacterium tuberculosis SUMu011]
 gi|307084151|ref|ZP_07493264.1| hypothetical protein TMLG_00559 [Mycobacterium tuberculosis SUMu012]
 gi|2117264|emb|CAB09064.1| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|13883423|gb|AAK47929.1| hypothetical protein MT3573.15 [Mycobacterium tuberculosis CDC1551]
 gi|31618349|emb|CAD96267.1| Probable phiRV1 phage protein [Mycobacterium bovis AF2122/97]
 gi|148505520|gb|ABQ73329.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289415945|gb|EFD13185.1| phi phage protein [Mycobacterium tuberculosis T46]
 gi|289420141|gb|EFD17342.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|289543361|gb|EFD47009.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289694248|gb|EFD61677.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|308215851|gb|EFO75250.1| hypothetical protein TMAG_02900 [Mycobacterium tuberculosis SUMu001]
 gi|308324805|gb|EFP13656.1| hypothetical protein TMBG_03943 [Mycobacterium tuberculosis SUMu002]
 gi|308329003|gb|EFP17854.1| hypothetical protein TMCG_02629 [Mycobacterium tuberculosis SUMu003]
 gi|308332842|gb|EFP21693.1| hypothetical protein TMDG_03223 [Mycobacterium tuberculosis SUMu004]
 gi|308336474|gb|EFP25325.1| hypothetical protein TMEG_03861 [Mycobacterium tuberculosis SUMu005]
 gi|308340352|gb|EFP29203.1| hypothetical protein TMFG_03044 [Mycobacterium tuberculosis SUMu006]
 gi|308348145|gb|EFP36996.1| hypothetical protein TMHG_04006 [Mycobacterium tuberculosis SUMu008]
 gi|308352854|gb|EFP41705.1| hypothetical protein TMIG_03753 [Mycobacterium tuberculosis SUMu009]
 gi|308358724|gb|EFP47575.1| hypothetical protein TMJG_03005 [Mycobacterium tuberculosis SUMu010]
 gi|308362606|gb|EFP51457.1| hypothetical protein TMKG_02079 [Mycobacterium tuberculosis SUMu011]
 gi|308366217|gb|EFP55068.1| hypothetical protein TMLG_00559 [Mycobacterium tuberculosis SUMu012]
 gi|323717863|gb|EGB27053.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=136

 Score =  273 bits (699),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)

Query  1    MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE  60
            MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE
Sbjct  1    MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE  60

Query  61   HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW  120
            HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW
Sbjct  61   HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW  120

Query  121  SRMIGLGGGSPAEDER  136
            SRMIGLGGGSPAEDER
Sbjct  121  SRMIGLGGGSPAEDER  136


>gi|306809485|ref|ZP_07446153.1| hypothetical protein TMGG_03958 [Mycobacterium tuberculosis SUMu007]
 gi|308344216|gb|EFP33067.1| hypothetical protein TMGG_03958 [Mycobacterium tuberculosis SUMu007]
Length=136

 Score =  271 bits (694),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)

Query  1    MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE  60
            MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRL+AALNRHE
Sbjct  1    MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLRAALNRHE  60

Query  61   HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW  120
            HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW
Sbjct  61   HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW  120

Query  121  SRMIGLGGGSPAEDER  136
            SRMIGLGGGSPAEDER
Sbjct  121  SRMIGLGGGSPAEDER  136


>gi|289569611|ref|ZP_06449838.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289543365|gb|EFD47013.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=121

 Score =  244 bits (624),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  1    MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE  60
            MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE
Sbjct  1    MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHE  60

Query  61   HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW  120
            HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW
Sbjct  61   HTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPW  120

Query  121  S  121
            S
Sbjct  121  S  121


>gi|289750142|ref|ZP_06509520.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289690729|gb|EFD58158.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=50

 Score =  103 bits (258),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 50/50 (100%), Positives = 50/50 (100%), Gaps = 0/50 (0%)

Query  1   MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALV  50
           MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALV
Sbjct  1   MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALV  50


>gi|308173804|ref|YP_003920509.1| iturin A synthetase A [Bacillus amyloliquefaciens DSM 7]
 gi|307606668|emb|CBI43039.1| iturin A synthetase A (B. subtilis) [Bacillus amyloliquefaciens 
DSM 7]
 gi|328911945|gb|AEB63541.1| iturin A synthetase A [Bacillus amyloliquefaciens LL3]
Length=3982

 Score = 35.4 bits (80),  Expect = 2.8, Method: Composition-based stats.
 Identities = 18/52 (35%), Positives = 26/52 (50%), Gaps = 0/52 (0%)

Query  32    ETIRAWFPDAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDE  83
             E  R W   APL V E   R +A LN ++    +E+FL+  + +A     DE
Sbjct  1258  ERNRCWAEAAPLSVNEGEERGEAVLNINQSKAHIESFLKTVISNASGIRADE  1309


>gi|341827505|gb|AEK88756.1| bacillomycin D synthetase A [Bacillus amyloliquefaciens XH7]
Length=3982

 Score = 35.4 bits (80),  Expect = 2.9, Method: Composition-based stats.
 Identities = 18/52 (35%), Positives = 26/52 (50%), Gaps = 0/52 (0%)

Query  32    ETIRAWFPDAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDE  83
             E  R W   APL V E   R +A LN ++    +E+FL+  + +A     DE
Sbjct  1258  ERNRCWAEAAPLSVNEGEERGEAVLNINQSKAHIESFLKTVISNASGIRADE  1309


>gi|328553269|gb|AEB23761.1| iturin A synthetase A [Bacillus amyloliquefaciens TA208]
Length=3982

 Score = 35.4 bits (80),  Expect = 2.9, Method: Composition-based stats.
 Identities = 18/52 (35%), Positives = 26/52 (50%), Gaps = 0/52 (0%)

Query  32    ETIRAWFPDAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDE  83
             E  R W   APL V E   R +A LN ++    +E+FL+  + +A     DE
Sbjct  1258  ERNRCWAEAAPLSVNEGEERGEAVLNINQSKAHIESFLKTVISNASGIRADE  1309


>gi|55376536|ref|YP_134388.1| hypothetical protein pNG6142 [Haloarcula marismortui ATCC 43049]
 gi|55229261|gb|AAV44682.1| unknown [Haloarcula marismortui ATCC 43049]
Length=316

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 26/87 (30%), Positives = 37/87 (43%), Gaps = 4/87 (4%)

Query  41   APLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAI  100
            +PL+ R  L R  +    H+    L AF R +VEH   A   E  P+       P++A +
Sbjct  123  SPLKHRALLSRSDSKYALHDEVSPLLAFARATVEHEHRARVREIAPSATIAWCDPKRALV  182

Query  101  NRQLGLAGDDEPDGDDTPPWSRMIGLG  127
              Q     D++ D     P   M GLG
Sbjct  183  RLQ----TDEDTDALQAAPDWEMTGLG  205


>gi|325473673|gb|EGC76862.1| translocase subunit secA [Treponema denticola F0402]
Length=922

 Score = 34.3 bits (77),  Expect = 7.1, Method: Composition-based stats.
 Identities = 20/77 (26%), Positives = 34/77 (45%), Gaps = 4/77 (5%)

Query  40   DAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHAD----AAGGDECGPAILAGRSGP  95
            D  +E+   LVR+Q +     H       ++ + +H      +  G   GP  L+ RS P
Sbjct  829  DIRIEIASRLVRVQISTEEEAHASRQMRSIQGNAQHNSMGSFSGSGHGMGPTALSARSRP  888

Query  96   EQAAINRQLGLAGDDEP  112
            E A + R +   G ++P
Sbjct  889  ENAQVVRTVPKVGRNDP  905


>gi|42527403|ref|NP_972501.1| preprotein translocase subunit SecA [Treponema denticola ATCC 
35405]
 gi|81831381|sp|Q73LG6.1|SECA_TREDE RecName: Full=Protein translocase subunit secA
 gi|41817988|gb|AAS12412.1| preprotein translocase, SecA subunit [Treponema denticola ATCC 
35405]
Length=922

 Score = 34.3 bits (77),  Expect = 7.1, Method: Composition-based stats.
 Identities = 20/77 (26%), Positives = 34/77 (45%), Gaps = 4/77 (5%)

Query  40   DAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHAD----AAGGDECGPAILAGRSGP  95
            D  +E+   LVR+Q +     H       ++ + +H      +  G   GP  L+ RS P
Sbjct  829  DIRIEIASRLVRVQISTEEEAHASRQMRSIQGNAQHNSMGSFSGSGHGMGPTALSARSRP  888

Query  96   EQAAINRQLGLAGDDEP  112
            E A + R +   G ++P
Sbjct  889  ENAQVVRTVPKVGRNDP  905



Lambda     K      H
   0.315    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128858389450


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40