BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1574

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608712|ref|NP_216090.1|  phiRV1 phage related protein [Mycob...   210    5e-53
gi|15843077|ref|NP_338114.1|  hypothetical protein MT3573.14 [Myc...   210    7e-53
gi|308376131|ref|ZP_07668199.1|  hypothetical protein TMGG_03957 ...   210    7e-53
gi|308380117|ref|ZP_07488758.2|  hypothetical protein TMKG_02080 ...   199    8e-50
gi|289569616|ref|ZP_06449843.1|  phiRv1 phage protein [Mycobacter...   112    2e-23
gi|308376130|ref|ZP_07668198.1|  hypothetical protein TMGG_03956 ...   112    2e-23
gi|148661370|ref|YP_001282893.1|  putative phiRv1 phage protein [...   111    3e-23
gi|57116889|ref|NP_216091.2|  phiRV1 phage protein [Mycobacterium...   111    3e-23
gi|289447184|ref|ZP_06436928.1|  phiRv1 phage protein [Mycobacter...   110    6e-23
gi|167967373|ref|ZP_02549650.1|  Probable phiRV1 phage protein [M...   107    5e-22
gi|289753662|ref|ZP_06513040.1|  phiRV1 phage protein [Mycobacter...  99.4    2e-19
gi|323717862|gb|EGB27052.1|  PhiRV1 phage protein [Mycobacterium ...  75.9    2e-12
gi|15843076|ref|NP_338113.1|  hypothetical protein MT3573.13 [Myc...  75.5    2e-12
gi|289751272|ref|ZP_06510650.1|  conserved hypothetical protein [...  67.4    7e-10
gi|167966928|ref|ZP_02549205.1|  hypothetical protein MtubH3_0225...  55.8    2e-06
gi|148823840|ref|YP_001288594.1|  hypothetical protein TBFG_12665...  55.8    2e-06
gi|294994257|ref|ZP_06799948.1|  hypothetical protein Mtub2_07013...  55.8    2e-06
gi|289762821|ref|ZP_06522199.1|  conserved hypothetical protein [...  55.8    2e-06
gi|15609784|ref|NP_217163.1|  hypothetical protein Rv2647 [Mycoba...  55.8    2e-06
gi|31792761|ref|NP_855254.1|  phiRV1 phage protein [Mycobacterium...  47.0    9e-04
gi|289762820|ref|ZP_06522198.1|  integrase [Mycobacterium tubercu...  39.3    0.18 
gi|167583878|ref|ZP_02376266.1|  phosphoesterase, PA-phosphatase ...  33.9    7.4  
gi|254516435|ref|ZP_05128494.1|  ISCps7, transposase [gamma prote...  33.9    8.5  


>gi|15608712|ref|NP_216090.1| phiRV1 phage related protein [Mycobacterium tuberculosis H37Rv]
 gi|31792760|ref|NP_855253.1| phiRV1 phage related protein [Mycobacterium bovis AF2122/97]
 gi|148661369|ref|YP_001282892.1| hypothetical protein MRA_1585 [Mycobacterium tuberculosis H37Ra]
 7 more sequence titles
 gi|289569615|ref|ZP_06449842.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|308377361|ref|ZP_07668497.1| hypothetical protein TMHG_04005 [Mycobacterium tuberculosis SUMu008]
 gi|2117263|emb|CAB09063.1| Probable phiRV1 phage related protein [Mycobacterium tuberculosis 
H37Rv]
 gi|31618350|emb|CAD96268.1| Probable phiRV1 phage related protein [Mycobacterium bovis AF2122/97]
 gi|148505521|gb|ABQ73330.1| hypothetical protein MRA_1585 [Mycobacterium tuberculosis H37Ra]
 gi|289543369|gb|EFD47017.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|308348144|gb|EFP36995.1| hypothetical protein TMHG_04005 [Mycobacterium tuberculosis SUMu008]
Length=103

 Score =  210 bits (535),  Expect = 5e-53, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG
Sbjct  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR
Sbjct  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103


>gi|15843077|ref|NP_338114.1| hypothetical protein MT3573.14 [Mycobacterium tuberculosis CDC1551]
 gi|167967374|ref|ZP_02549651.1| hypothetical protein MtubH3_04772 [Mycobacterium tuberculosis 
H37Ra]
 gi|13883422|gb|AAK47928.1| hypothetical protein MT3573.14 [Mycobacterium tuberculosis CDC1551]
Length=106

 Score =  210 bits (534),  Expect = 7e-53, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG
Sbjct  4    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  63

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR
Sbjct  64   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  106


>gi|308376131|ref|ZP_07668199.1| hypothetical protein TMGG_03957 [Mycobacterium tuberculosis SUMu007]
 gi|308344215|gb|EFP33066.1| hypothetical protein TMGG_03957 [Mycobacterium tuberculosis SUMu007]
Length=163

 Score =  210 bits (534),  Expect = 7e-53, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG
Sbjct  61   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  120

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR
Sbjct  121  SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  163


>gi|308380117|ref|ZP_07488758.2| hypothetical protein TMKG_02080 [Mycobacterium tuberculosis SUMu011]
 gi|308362607|gb|EFP51458.1| hypothetical protein TMKG_02080 [Mycobacterium tuberculosis SUMu011]
Length=172

 Score =  199 bits (507),  Expect = 8e-50, Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG
Sbjct  61   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  120

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLS  97
            SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLS
Sbjct  121  SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLS  157


>gi|289569616|ref|ZP_06449843.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|289543370|gb|EFD47018.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
Length=148

 Score =  112 bits (279),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 57/85 (68%), Positives = 62/85 (73%), Gaps = 3/85 (3%)

Query  7   SERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAGSPSWNA  66
           S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AGSPSWN 
Sbjct  6   SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNG  62

Query  67  RKPRSANARVVASVHRSPMPALVPW  91
           RKP S N +      R  + A  PW
Sbjct  63  RKPSSGNRKAATMAARLDILAWGPW  87


>gi|308376130|ref|ZP_07668198.1| hypothetical protein TMGG_03956 [Mycobacterium tuberculosis SUMu007]
 gi|308344237|gb|EFP33088.1| hypothetical protein TMGG_03956 [Mycobacterium tuberculosis SUMu007]
Length=178

 Score =  112 bits (279),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 62/103 (61%), Positives = 71/103 (69%), Gaps = 4/103 (3%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AG
Sbjct  28   MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  83

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            SPSWN RKP S N +      R  + A  PW  S+  + + R+
Sbjct  84   SPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  126


>gi|148661370|ref|YP_001282893.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289443028|ref|ZP_06432772.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|308377360|ref|ZP_07668496.1| hypothetical protein TMHG_04004 [Mycobacterium tuberculosis SUMu008]
 gi|148505522|gb|ABQ73331.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289415947|gb|EFD13187.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|308348143|gb|EFP36994.1| hypothetical protein TMHG_04004 [Mycobacterium tuberculosis SUMu008]
Length=151

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 62/103 (61%), Positives = 71/103 (69%), Gaps = 4/103 (3%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AG
Sbjct  1    MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  56

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            SPSWN RKP S N +      R  + A  PW  S+  + + R+
Sbjct  57   SPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  99


>gi|57116889|ref|NP_216091.2| phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|38684038|emb|CAB09062.2| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
Length=166

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 62/103 (61%), Positives = 71/103 (69%), Gaps = 4/103 (3%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AG
Sbjct  1    MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  56

Query  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            SPSWN RKP S N +      R  + A  PW  S+  + + R+
Sbjct  57   SPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  99


>gi|289447184|ref|ZP_06436928.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|308400762|ref|ZP_07669403.1| hypothetical protein TMLG_00560 [Mycobacterium tuberculosis SUMu012]
 gi|289420142|gb|EFD17343.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|308366218|gb|EFP55069.1| hypothetical protein TMLG_00560 [Mycobacterium tuberculosis SUMu012]
Length=287

 Score =  110 bits (276),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/97 (61%), Positives = 68/97 (71%), Gaps = 3/97 (3%)

Query  7    SERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAGSPSWNA  66
            S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AGSPSWN 
Sbjct  142  SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNG  198

Query  67   RKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103
            RKP S N +      R  + A  PW  S+  + + R+
Sbjct  199  RKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  235


>gi|167967373|ref|ZP_02549650.1| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Ra]
Length=84

 Score =  107 bits (267),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 53/67 (80%), Positives = 56/67 (84%), Gaps = 3/67 (4%)

Query  7   SERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAGSPSWNA  66
           S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AGSPSWN 
Sbjct  6   SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNG  62

Query  67  RKPRSAN  73
           RKP S N
Sbjct  63  RKPSSGN  69


>gi|289753662|ref|ZP_06513040.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|289694249|gb|EFD61678.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
Length=141

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 52/62 (84%), Positives = 52/62 (84%), Gaps = 5/62 (8%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60
            MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIR       APL  G
Sbjct  61   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIR-----GPAPLSRG  115

Query  61   SP  62
             P
Sbjct  116  RP  117


>gi|323717862|gb|EGB27052.1| PhiRV1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=51

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 38/42 (91%), Positives = 39/42 (93%), Gaps = 0/42 (0%)

Query  1   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
           MG KPESER STKTDTAIGAALGISAGTYRRLKRIDNAT S+
Sbjct  1   MGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSE  42


>gi|15843076|ref|NP_338113.1| hypothetical protein MT3573.13 [Mycobacterium tuberculosis CDC1551]
 gi|13883421|gb|AAK47927.1| hypothetical protein MT3573.13 [Mycobacterium tuberculosis CDC1551]
Length=54

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 38/42 (91%), Positives = 39/42 (93%), Gaps = 0/42 (0%)

Query  1   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
           MG KPESER STKTDTAIGAALGISAGTYRRLKRIDNAT S+
Sbjct  4   MGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSE  45


>gi|289751272|ref|ZP_06510650.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691859|gb|EFD59288.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=147

 Score = 67.4 bits (163),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 34/42 (81%), Positives = 36/42 (86%), Gaps = 0/42 (0%)

Query  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
            M  KPESER + K DTAIGAALGISAGTYRRLKRIDNAT S+
Sbjct  100  MEPKPESERDAHKADTAIGAALGISAGTYRRLKRIDNATRSE  141


>gi|167966928|ref|ZP_02549205.1| hypothetical protein MtubH3_02255 [Mycobacterium tuberculosis 
H37Ra]
Length=113

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
            KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  63   KPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  101


>gi|148823840|ref|YP_001288594.1| hypothetical protein TBFG_12665 [Mycobacterium tuberculosis F11]
 gi|253798269|ref|YP_003031270.1| hypothetical protein TBMG_01324 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365313|ref|ZP_04981358.1| hypothetical protein TBHG_02584 [Mycobacterium tuberculosis str. 
Haarlem]
 36 more sequence titles
 gi|254551702|ref|ZP_05142149.1| hypothetical protein Mtube_14799 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289746450|ref|ZP_06505828.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|297635259|ref|ZP_06953039.1| hypothetical protein MtubK4_14105 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732255|ref|ZP_06961373.1| hypothetical protein MtubKR_14254 [Mycobacterium tuberculosis 
KZN R506]
 gi|306776926|ref|ZP_07415263.1| hypothetical protein TMAG_02457 [Mycobacterium tuberculosis SUMu001]
 gi|306780831|ref|ZP_07419168.1| hypothetical protein TMBG_02788 [Mycobacterium tuberculosis SUMu002]
 gi|306785455|ref|ZP_07423777.1| hypothetical protein TMCG_01896 [Mycobacterium tuberculosis SUMu003]
 gi|306790053|ref|ZP_07428375.1| hypothetical protein TMDG_00366 [Mycobacterium tuberculosis SUMu004]
 gi|306794136|ref|ZP_07432438.1| hypothetical protein TMEG_03328 [Mycobacterium tuberculosis SUMu005]
 gi|306798552|ref|ZP_07436854.1| hypothetical protein TMFG_03896 [Mycobacterium tuberculosis SUMu006]
 gi|306804412|ref|ZP_07441080.1| hypothetical protein TMHG_01845 [Mycobacterium tuberculosis SUMu008]
 gi|306807548|ref|ZP_07444216.1| hypothetical protein TMGG_02222 [Mycobacterium tuberculosis SUMu007]
 gi|306968702|ref|ZP_07481363.1| hypothetical protein TMIG_03978 [Mycobacterium tuberculosis SUMu009]
 gi|306973041|ref|ZP_07485702.1| hypothetical protein TMJG_01631 [Mycobacterium tuberculosis SUMu010]
 gi|307080751|ref|ZP_07489921.1| hypothetical protein TMKG_03080 [Mycobacterium tuberculosis SUMu011]
 gi|307085339|ref|ZP_07494452.1| hypothetical protein TMLG_02377 [Mycobacterium tuberculosis SUMu012]
 gi|313659588|ref|ZP_07816468.1| hypothetical protein MtubKV_14259 [Mycobacterium tuberculosis 
KZN V2475]
 gi|134150826|gb|EBA42871.1| hypothetical protein TBHG_02584 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148722367|gb|ABR06992.1| hypothetical protein TBFG_12665 [Mycobacterium tuberculosis F11]
 gi|253319772|gb|ACT24375.1| hypothetical protein TBMG_01324 [Mycobacterium tuberculosis KZN 
1435]
 gi|289686978|gb|EFD54466.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308214700|gb|EFO74099.1| hypothetical protein TMAG_02457 [Mycobacterium tuberculosis SUMu001]
 gi|308326335|gb|EFP15186.1| hypothetical protein TMBG_02788 [Mycobacterium tuberculosis SUMu002]
 gi|308329878|gb|EFP18729.1| hypothetical protein TMCG_01896 [Mycobacterium tuberculosis SUMu003]
 gi|308333495|gb|EFP22346.1| hypothetical protein TMDG_00366 [Mycobacterium tuberculosis SUMu004]
 gi|308337529|gb|EFP26380.1| hypothetical protein TMEG_03328 [Mycobacterium tuberculosis SUMu005]
 gi|308341195|gb|EFP30046.1| hypothetical protein TMFG_03896 [Mycobacterium tuberculosis SUMu006]
 gi|308346042|gb|EFP34893.1| hypothetical protein TMGG_02222 [Mycobacterium tuberculosis SUMu007]
 gi|308349005|gb|EFP37856.1| hypothetical protein TMHG_01845 [Mycobacterium tuberculosis SUMu008]
 gi|308353730|gb|EFP42581.1| hypothetical protein TMIG_03978 [Mycobacterium tuberculosis SUMu009]
 gi|308357573|gb|EFP46424.1| hypothetical protein TMJG_01631 [Mycobacterium tuberculosis SUMu010]
 gi|308361516|gb|EFP50367.1| hypothetical protein TMKG_03080 [Mycobacterium tuberculosis SUMu011]
 gi|308365130|gb|EFP53981.1| hypothetical protein TMLG_02377 [Mycobacterium tuberculosis SUMu012]
 gi|323718761|gb|EGB27920.1| hypothetical protein TMMG_02660 [Mycobacterium tuberculosis CDC1551A]
 gi|339295520|gb|AEJ47631.1| hypothetical protein CCDC5079_2441 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299138|gb|AEJ51248.1| hypothetical protein CCDC5180_2411 [Mycobacterium tuberculosis 
CCDC5180]
Length=154

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
            KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  104  KPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  142


>gi|294994257|ref|ZP_06799948.1| hypothetical protein Mtub2_07013 [Mycobacterium tuberculosis 
210]
Length=119

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
            KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  69   KPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  107


>gi|289762821|ref|ZP_06522199.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289710327|gb|EFD74343.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=154

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
            KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  104  KPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  142


>gi|15609784|ref|NP_217163.1| hypothetical protein Rv2647 [Mycobacterium tuberculosis H37Rv]
 gi|15842188|ref|NP_337225.1| hypothetical protein MT2725 [Mycobacterium tuberculosis CDC1551]
 gi|148662488|ref|YP_001284011.1| hypothetical protein MRA_2676 [Mycobacterium tuberculosis H37Ra]
 18 more sequence titles
 gi|289444190|ref|ZP_06433934.1| hypothetical protein TBLG_01292 [Mycobacterium tuberculosis T46]
 gi|289448304|ref|ZP_06438048.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289553564|ref|ZP_06442774.1| hypothetical protein TBXG_01314 [Mycobacterium tuberculosis KZN 
605]
 gi|289570822|ref|ZP_06451049.1| hypothetical protein TBJG_04236 [Mycobacterium tuberculosis T17]
 gi|289758777|ref|ZP_06518155.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298526122|ref|ZP_07013531.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|1550688|emb|CAB02355.1| HYPOTHETICAL PROTEIN Rv2647 [Mycobacterium tuberculosis H37Rv]
 gi|13882476|gb|AAK47039.1| hypothetical protein MT2725 [Mycobacterium tuberculosis CDC1551]
 gi|148506640|gb|ABQ74449.1| hypothetical protein MRA_2676 [Mycobacterium tuberculosis H37Ra]
 gi|289417109|gb|EFD14349.1| hypothetical protein TBLG_01292 [Mycobacterium tuberculosis T46]
 gi|289421262|gb|EFD18463.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289438196|gb|EFD20689.1| hypothetical protein TBXG_01314 [Mycobacterium tuberculosis KZN 
605]
 gi|289544576|gb|EFD48224.1| hypothetical protein TBJG_04236 [Mycobacterium tuberculosis T17]
 gi|289714341|gb|EFD78353.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495916|gb|EFI31210.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326904261|gb|EGE51194.1| hypothetical protein TBPG_02159 [Mycobacterium tuberculosis W-148]
 gi|328458041|gb|AEB03464.1| hypothetical protein TBSG_01335 [Mycobacterium tuberculosis KZN 
4207]
 gi|344220476|gb|AEN01107.1| hypothetical protein MTCTRI2_2701 [Mycobacterium tuberculosis 
CTRI-2]
Length=122

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42
            KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  72   KPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110


>gi|31792761|ref|NP_855254.1| phiRV1 phage protein [Mycobacterium bovis AF2122/97]
 gi|31618351|emb|CAD96269.1| Probable phiRV1 phage protein [Mycobacterium bovis AF2122/97]
Length=117

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 23/47 (49%), Positives = 28/47 (60%), Gaps = 0/47 (0%)

Query  54  MAPLVAGSPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATL  100
           MAPL AGSPSWN RKP S N +      R  + A  PW Q+R+ A+ 
Sbjct  1   MAPLAAGSPSWNGRKPSSGNRKAATMAARLDILAWGPWAQARIGASF  47


>gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|289710326|gb|EFD74342.1| integrase [Mycobacterium tuberculosis GM 1503]
Length=435

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 4/32 (12%)

Query  48   RFAE----KQMAPLVAGSPSWNARKPRSANAR  75
            RFA     +  +PLVAGSPSWN RKP S NA+
Sbjct  392  RFARISPPRSCSPLVAGSPSWNGRKPNSGNAK  423


>gi|167583878|ref|ZP_02376266.1| phosphoesterase, PA-phosphatase related protein [Burkholderia 
ubonensis Bu]
Length=232

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 20/62 (33%), Positives = 31/62 (50%), Gaps = 0/62 (0%)

Query  18   IGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAGSPSWNARKPRSANARVV  77
            +G ALG++AG    + R+  A HS  + +       +A LV  + SW A   R +   V+
Sbjct  106  LGVALGLAAGVAVGVSRVALAAHSPSESVTGCIVGALAALVFIAASWRAEPHRWSAPAVI  165

Query  78   AS  79
            AS
Sbjct  166  AS  167


>gi|254516435|ref|ZP_05128494.1| ISCps7, transposase [gamma proteobacterium NOR5-3]
 gi|219674858|gb|EED31225.1| ISCps7, transposase [gamma proteobacterium NOR5-3]
Length=245

 Score = 33.9 bits (76),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 29/97 (30%), Positives = 43/97 (45%), Gaps = 11/97 (11%)

Query  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMA-------P  56
            KPE  R  +   T     L +S     RLKR+  + HS  K I +  +K++A        
Sbjct  124  KPEKLRLISDLLTVRSQCLKMSTMQKNRLKRMPASVHSHIKSILKTLQKEIAAIDKKVDK  183

Query  57   LVAGSPSWNARKPRSANA----RVVASVHRSPMPALV  89
            L +  P W A++    +A    RV+A    S +P LV
Sbjct  184  LASDVPEWKAQRDLLMSAKGVGRVLAYTLMSELPELV  220



Lambda     K      H
   0.314    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127822873252


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40