BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1575

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116889|ref|NP_216091.2|  phiRV1 phage protein [Mycobacterium...   332    1e-89
gi|308376130|ref|ZP_07668198.1|  hypothetical protein TMGG_03956 ...   261    2e-68
gi|148661370|ref|YP_001282893.1|  putative phiRv1 phage protein [...   261    3e-68
gi|289447184|ref|ZP_06436928.1|  phiRv1 phage protein [Mycobacter...   260    4e-68
gi|289569616|ref|ZP_06449843.1|  phiRv1 phage protein [Mycobacter...   223    1e-56
gi|167967373|ref|ZP_02549650.1|  Probable phiRV1 phage protein [M...   172    2e-41
gi|31792761|ref|NP_855254.1|  phiRV1 phage protein [Mycobacterium...   142    2e-32
gi|15608712|ref|NP_216090.1|  phiRV1 phage related protein [Mycob...   111    3e-23
gi|15843077|ref|NP_338114.1|  hypothetical protein MT3573.14 [Myc...   111    4e-23
gi|308376131|ref|ZP_07668199.1|  hypothetical protein TMGG_03957 ...   110    1e-22
gi|308380117|ref|ZP_07488758.2|  hypothetical protein TMKG_02080 ...   108    2e-22
gi|289753662|ref|ZP_06513040.1|  phiRV1 phage protein [Mycobacter...  72.4    2e-11
gi|289762820|ref|ZP_06522198.1|  integrase [Mycobacterium tubercu...  65.1    3e-09
gi|289751272|ref|ZP_06510650.1|  conserved hypothetical protein [...  55.8    2e-06
gi|289443027|ref|ZP_06432771.1|  phiRv1 phage protein [Mycobacter...  55.5    2e-06
gi|323717862|gb|EGB27052.1|  PhiRV1 phage protein [Mycobacterium ...  54.7    4e-06
gi|15843076|ref|NP_338113.1|  hypothetical protein MT3573.13 [Myc...  54.7    4e-06
gi|15609784|ref|NP_217163.1|  hypothetical protein Rv2647 [Mycoba...  46.2    0.002
gi|167966928|ref|ZP_02549205.1|  hypothetical protein MtubH3_0225...  46.2    0.002
gi|148823840|ref|YP_001288594.1|  hypothetical protein TBFG_12665...  45.8    0.002
gi|294994257|ref|ZP_06799948.1|  hypothetical protein Mtub2_07013...  45.8    0.002
gi|289762821|ref|ZP_06522199.1|  conserved hypothetical protein [...  45.8    0.002
gi|311277575|ref|YP_003939806.1|  aspartate kinase [Enterobacter ...  34.7    5.2  
gi|321449205|gb|EFX61778.1|  hypothetical protein DAPPUDRAFT_2719...  34.3    7.0  


>gi|57116889|ref|NP_216091.2| phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|38684038|emb|CAB09062.2| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
Length=166

 Score =  332 bits (851),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 166/166 (100%), Positives = 166/166 (100%), Gaps = 0/166 (0%)

Query  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60
            MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW
Sbjct  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60

Query  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120
            NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE
Sbjct  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120

Query  121  STTQPAASWRVGGPAPLSRGRPRLALSYLRGSLHLQNSKRVAHQHI  166
            STTQPAASWRVGGPAPLSRGRPRLALSYLRGSLHLQNSKRVAHQHI
Sbjct  121  STTQPAASWRVGGPAPLSRGRPRLALSYLRGSLHLQNSKRVAHQHI  166


>gi|308376130|ref|ZP_07668198.1| hypothetical protein TMGG_03956 [Mycobacterium tuberculosis SUMu007]
 gi|308344237|gb|EFP33088.1| hypothetical protein TMGG_03956 [Mycobacterium tuberculosis SUMu007]
Length=178

 Score =  261 bits (668),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 132/134 (99%), Positives = 132/134 (99%), Gaps = 0/134 (0%)

Query  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60
            MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW
Sbjct  28   MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  87

Query  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120
            NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE
Sbjct  88   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  147

Query  121  STTQPAASWRVGGP  134
            STTQPAASWR G P
Sbjct  148  STTQPAASWRRGRP  161


>gi|148661370|ref|YP_001282893.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289443028|ref|ZP_06432772.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|308377360|ref|ZP_07668496.1| hypothetical protein TMHG_04004 [Mycobacterium tuberculosis SUMu008]
 gi|148505522|gb|ABQ73331.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289415947|gb|EFD13187.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|308348143|gb|EFP36994.1| hypothetical protein TMHG_04004 [Mycobacterium tuberculosis SUMu008]
Length=151

 Score =  261 bits (667),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 132/134 (99%), Positives = 132/134 (99%), Gaps = 0/134 (0%)

Query  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60
            MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW
Sbjct  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60

Query  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120
            NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE
Sbjct  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120

Query  121  STTQPAASWRVGGP  134
            STTQPAASWR G P
Sbjct  121  STTQPAASWRRGRP  134


>gi|289447184|ref|ZP_06436928.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|308400762|ref|ZP_07669403.1| hypothetical protein TMLG_00560 [Mycobacterium tuberculosis SUMu012]
 gi|289420142|gb|EFD17343.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|308366218|gb|EFP55069.1| hypothetical protein TMLG_00560 [Mycobacterium tuberculosis SUMu012]
Length=287

 Score =  260 bits (665),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 132/134 (99%), Positives = 132/134 (99%), Gaps = 0/134 (0%)

Query  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60
            MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW
Sbjct  137  MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  196

Query  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120
            NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE
Sbjct  197  NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  256

Query  121  STTQPAASWRVGGP  134
            STTQPAASWR G P
Sbjct  257  STTQPAASWRRGRP  270


>gi|289569616|ref|ZP_06449843.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|289543370|gb|EFD47018.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
Length=148

 Score =  223 bits (567),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 111/122 (91%), Positives = 112/122 (92%), Gaps = 0/122 (0%)

Query  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60
            MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW
Sbjct  1    MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60

Query  61   NGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGSNE  120
            NGRKPSSGNRKAATMAARLDILAWGPWAP+QN SV RRKQTLLSA PS S  A TGGSN 
Sbjct  61   NGRKPSSGNRKAATMAARLDILAWGPWAPTQNPSVARRKQTLLSAHPSGSSSAATGGSNN  120

Query  121  ST  122
              
Sbjct  121  DV  122


>gi|167967373|ref|ZP_02549650.1| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Ra]
Length=84

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1   MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60
           MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW
Sbjct  1   MEPKPSQRHTDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSW  60

Query  61  NGRKPSSGNRKAATMAARLDILAW  84
           NGRKPSSGNRKAATMAARLDILAW
Sbjct  61  NGRKPSSGNRKAATMAARLDILAW  84


>gi|31792761|ref|NP_855254.1| phiRV1 phage protein [Mycobacterium bovis AF2122/97]
 gi|31618351|emb|CAD96269.1| Probable phiRV1 phage protein [Mycobacterium bovis AF2122/97]
Length=117

 Score =  142 bits (357),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 83/124 (67%), Positives = 86/124 (70%), Gaps = 14/124 (11%)

Query  50   MAPLAAGSPSWNGRKPSSGNRKAATMAARLDILAWGPWAPS-------QNRSVVRRKQTL  102
            MAPLAAGSPSWNGRKPSSGNRKAATMAARLDILAWGPWA +       +NR   RR    
Sbjct  1    MAPLAAGSPSWNGRKPSSGNRKAATMAARLDILAWGPWAQARIGASFDENRHCYRRSPRH  60

Query  103  LSAQPSASPPAPTGGSNESTTQPAASWRVGGPAPLSRGRPRLALSYLRGSLHLQNSKRVA  162
            L          P   +N     P     VGGPAPLSRGRPRLALSYLRGSLHLQNSKRVA
Sbjct  61   LRRH------LPAAQTNRQRN-PQRVGGVGGPAPLSRGRPRLALSYLRGSLHLQNSKRVA  113

Query  163  HQHI  166
            HQHI
Sbjct  114  HQHI  117


>gi|15608712|ref|NP_216090.1| phiRV1 phage related protein [Mycobacterium tuberculosis H37Rv]
 gi|31792760|ref|NP_855253.1| phiRV1 phage related protein [Mycobacterium bovis AF2122/97]
 gi|148661369|ref|YP_001282892.1| hypothetical protein MRA_1585 [Mycobacterium tuberculosis H37Ra]
 7 more sequence titles
 gi|289569615|ref|ZP_06449842.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|308377361|ref|ZP_07668497.1| hypothetical protein TMHG_04005 [Mycobacterium tuberculosis SUMu008]
 gi|2117263|emb|CAB09063.1| Probable phiRV1 phage related protein [Mycobacterium tuberculosis 
H37Rv]
 gi|31618350|emb|CAD96268.1| Probable phiRV1 phage related protein [Mycobacterium bovis AF2122/97]
 gi|148505521|gb|ABQ73330.1| hypothetical protein MRA_1585 [Mycobacterium tuberculosis H37Ra]
 gi|289543369|gb|EFD47017.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|308348144|gb|EFP36995.1| hypothetical protein TMHG_04005 [Mycobacterium tuberculosis SUMu008]
Length=103

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 62/103 (61%), Positives = 71/103 (69%), Gaps = 4/103 (3%)

Query  1    MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  56
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AG
Sbjct  1    MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  60

Query  57   SPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  99
            SPSWN RKP S N +      R  + A  PW  S+  + + R+
Sbjct  61   SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  103


>gi|15843077|ref|NP_338114.1| hypothetical protein MT3573.14 [Mycobacterium tuberculosis CDC1551]
 gi|167967374|ref|ZP_02549651.1| hypothetical protein MtubH3_04772 [Mycobacterium tuberculosis 
H37Ra]
 gi|13883422|gb|AAK47928.1| hypothetical protein MT3573.14 [Mycobacterium tuberculosis CDC1551]
Length=106

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 59/97 (61%), Positives = 68/97 (71%), Gaps = 3/97 (3%)

Query  6    SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNG  62
            S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AGSPSWN 
Sbjct  10   SERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAGSPSWNA  69

Query  63   RKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  99
            RKP S N +      R  + A  PW  S+  + + R+
Sbjct  70   RKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  106


>gi|308376131|ref|ZP_07668199.1| hypothetical protein TMGG_03957 [Mycobacterium tuberculosis SUMu007]
 gi|308344215|gb|EFP33066.1| hypothetical protein TMGG_03957 [Mycobacterium tuberculosis SUMu007]
Length=163

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 62/103 (61%), Positives = 71/103 (69%), Gaps = 4/103 (3%)

Query  1    MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  56
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AG
Sbjct  61   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  120

Query  57   SPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRK  99
            SPSWN RKP S N +      R  + A  PW  S+  + + R+
Sbjct  121  SPSWNARKPRSANARVVASVHRSPMPALVPWNQSRLSATLTRR  163


>gi|308380117|ref|ZP_07488758.2| hypothetical protein TMKG_02080 [Mycobacterium tuberculosis SUMu011]
 gi|308362607|gb|EFP51458.1| hypothetical protein TMKG_02080 [Mycobacterium tuberculosis SUMu011]
Length=172

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 61/95 (65%), Positives = 67/95 (71%), Gaps = 4/95 (4%)

Query  1    MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  56
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR FAEKQMAPL AG
Sbjct  61   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIRRFAEKQMAPLVAG  120

Query  57   SPSWNGRKPSSGNRKAATMAARLDILAWGPWAPSQ  91
            SPSWN RKP S N +      R  + A  PW  S+
Sbjct  121  SPSWNARKPRSANARVVASVHRSPMPALVPWNQSR  155


>gi|289753662|ref|ZP_06513040.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|289694249|gb|EFD61678.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
Length=141

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 34/34 (100%), Positives = 34/34 (100%), Gaps = 0/34 (0%)

Query  133  GPAPLSRGRPRLALSYLRGSLHLQNSKRVAHQHI  166
            GPAPLSRGRPRLALSYLRGSLHLQNSKRVAHQHI
Sbjct  108  GPAPLSRGRPRLALSYLRGSLHLQNSKRVAHQHI  141


 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 40/62 (65%), Positives = 44/62 (71%), Gaps = 9/62 (14%)

Query  1    MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSDDKEIRLFAEKQMAPLAAG  56
            M  KP S+RH   TD  +GAALGISAGTY+RLKRIDNAT SDDKEIR       APL+ G
Sbjct  61   MGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSDDKEIR-----GPAPLSRG  115

Query  57   SP  58
             P
Sbjct  116  RP  117


>gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|289710326|gb|EFD74342.1| integrase [Mycobacterium tuberculosis GM 1503]
Length=435

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 0/50 (0%)

Query  34   ATRSDDKEIRLFAEKQMAPLAAGSPSWNGRKPSSGNRKAATMAARLDILA  83
            A RS+ +  R+   +  +PL AGSPSWNGRKP+SGN KAATMAARLDILA
Sbjct  386  AERSETRFARISPPRSCSPLVAGSPSWNGRKPNSGNAKAATMAARLDILA  435


>gi|289751272|ref|ZP_06510650.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691859|gb|EFD59288.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=147

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 34/42 (81%), Gaps = 4/42 (9%)

Query  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38
            MEPKP S+R     D  +GAALGISAGTY+RLKRIDNATRS+
Sbjct  100  MEPKPESERDAHKADTAIGAALGISAGTYRRLKRIDNATRSE  141


>gi|289443027|ref|ZP_06432771.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|289415946|gb|EFD13186.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
Length=99

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/30 (94%), Positives = 29/30 (97%), Gaps = 0/30 (0%)

Query  99   KQTLLSAQPSASPPAPTGGSNESTTQPAAS  128
            KQTLLSAQPSASPPAPTGGSNESTTQP A+
Sbjct  13   KQTLLSAQPSASPPAPTGGSNESTTQPTAT  42


>gi|323717862|gb|EGB27052.1| PhiRV1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=51

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 34/42 (81%), Gaps = 4/42 (9%)

Query  1   MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSD  38
           M PKP S+R    TD  +GAALGISAGTY+RLKRIDNATRS+
Sbjct  1   MGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSE  42


>gi|15843076|ref|NP_338113.1| hypothetical protein MT3573.13 [Mycobacterium tuberculosis CDC1551]
 gi|13883421|gb|AAK47927.1| hypothetical protein MT3573.13 [Mycobacterium tuberculosis CDC1551]
Length=54

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 34/42 (81%), Gaps = 4/42 (9%)

Query  1   MEPKP-SQRH---TDKEVGAALGISAGTYKRLKRIDNATRSD  38
           M PKP S+R    TD  +GAALGISAGTY+RLKRIDNATRS+
Sbjct  4   MGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSE  45


>gi|15609784|ref|NP_217163.1| hypothetical protein Rv2647 [Mycobacterium tuberculosis H37Rv]
 gi|15842188|ref|NP_337225.1| hypothetical protein MT2725 [Mycobacterium tuberculosis CDC1551]
 gi|148662488|ref|YP_001284011.1| hypothetical protein MRA_2676 [Mycobacterium tuberculosis H37Ra]
 18 more sequence titles
 gi|289444190|ref|ZP_06433934.1| hypothetical protein TBLG_01292 [Mycobacterium tuberculosis T46]
 gi|289448304|ref|ZP_06438048.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289553564|ref|ZP_06442774.1| hypothetical protein TBXG_01314 [Mycobacterium tuberculosis KZN 
605]
 gi|289570822|ref|ZP_06451049.1| hypothetical protein TBJG_04236 [Mycobacterium tuberculosis T17]
 gi|289758777|ref|ZP_06518155.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298526122|ref|ZP_07013531.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|1550688|emb|CAB02355.1| HYPOTHETICAL PROTEIN Rv2647 [Mycobacterium tuberculosis H37Rv]
 gi|13882476|gb|AAK47039.1| hypothetical protein MT2725 [Mycobacterium tuberculosis CDC1551]
 gi|148506640|gb|ABQ74449.1| hypothetical protein MRA_2676 [Mycobacterium tuberculosis H37Ra]
 gi|289417109|gb|EFD14349.1| hypothetical protein TBLG_01292 [Mycobacterium tuberculosis T46]
 gi|289421262|gb|EFD18463.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289438196|gb|EFD20689.1| hypothetical protein TBXG_01314 [Mycobacterium tuberculosis KZN 
605]
 gi|289544576|gb|EFD48224.1| hypothetical protein TBJG_04236 [Mycobacterium tuberculosis T17]
 gi|289714341|gb|EFD78353.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495916|gb|EFI31210.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326904261|gb|EGE51194.1| hypothetical protein TBPG_02159 [Mycobacterium tuberculosis W-148]
 gi|328458041|gb|AEB03464.1| hypothetical protein TBSG_01335 [Mycobacterium tuberculosis KZN 
4207]
 gi|344220476|gb|AEN01107.1| hypothetical protein MTCTRI2_2701 [Mycobacterium tuberculosis 
CTRI-2]
Length=122

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  69   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110


>gi|167966928|ref|ZP_02549205.1| hypothetical protein MtubH3_02255 [Mycobacterium tuberculosis 
H37Ra]
Length=113

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  60   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  101


>gi|148823840|ref|YP_001288594.1| hypothetical protein TBFG_12665 [Mycobacterium tuberculosis F11]
 gi|253798269|ref|YP_003031270.1| hypothetical protein TBMG_01324 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365313|ref|ZP_04981358.1| hypothetical protein TBHG_02584 [Mycobacterium tuberculosis str. 
Haarlem]
 36 more sequence titles
 gi|254551702|ref|ZP_05142149.1| hypothetical protein Mtube_14799 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289746450|ref|ZP_06505828.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|297635259|ref|ZP_06953039.1| hypothetical protein MtubK4_14105 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732255|ref|ZP_06961373.1| hypothetical protein MtubKR_14254 [Mycobacterium tuberculosis 
KZN R506]
 gi|306776926|ref|ZP_07415263.1| hypothetical protein TMAG_02457 [Mycobacterium tuberculosis SUMu001]
 gi|306780831|ref|ZP_07419168.1| hypothetical protein TMBG_02788 [Mycobacterium tuberculosis SUMu002]
 gi|306785455|ref|ZP_07423777.1| hypothetical protein TMCG_01896 [Mycobacterium tuberculosis SUMu003]
 gi|306790053|ref|ZP_07428375.1| hypothetical protein TMDG_00366 [Mycobacterium tuberculosis SUMu004]
 gi|306794136|ref|ZP_07432438.1| hypothetical protein TMEG_03328 [Mycobacterium tuberculosis SUMu005]
 gi|306798552|ref|ZP_07436854.1| hypothetical protein TMFG_03896 [Mycobacterium tuberculosis SUMu006]
 gi|306804412|ref|ZP_07441080.1| hypothetical protein TMHG_01845 [Mycobacterium tuberculosis SUMu008]
 gi|306807548|ref|ZP_07444216.1| hypothetical protein TMGG_02222 [Mycobacterium tuberculosis SUMu007]
 gi|306968702|ref|ZP_07481363.1| hypothetical protein TMIG_03978 [Mycobacterium tuberculosis SUMu009]
 gi|306973041|ref|ZP_07485702.1| hypothetical protein TMJG_01631 [Mycobacterium tuberculosis SUMu010]
 gi|307080751|ref|ZP_07489921.1| hypothetical protein TMKG_03080 [Mycobacterium tuberculosis SUMu011]
 gi|307085339|ref|ZP_07494452.1| hypothetical protein TMLG_02377 [Mycobacterium tuberculosis SUMu012]
 gi|313659588|ref|ZP_07816468.1| hypothetical protein MtubKV_14259 [Mycobacterium tuberculosis 
KZN V2475]
 gi|134150826|gb|EBA42871.1| hypothetical protein TBHG_02584 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148722367|gb|ABR06992.1| hypothetical protein TBFG_12665 [Mycobacterium tuberculosis F11]
 gi|253319772|gb|ACT24375.1| hypothetical protein TBMG_01324 [Mycobacterium tuberculosis KZN 
1435]
 gi|289686978|gb|EFD54466.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308214700|gb|EFO74099.1| hypothetical protein TMAG_02457 [Mycobacterium tuberculosis SUMu001]
 gi|308326335|gb|EFP15186.1| hypothetical protein TMBG_02788 [Mycobacterium tuberculosis SUMu002]
 gi|308329878|gb|EFP18729.1| hypothetical protein TMCG_01896 [Mycobacterium tuberculosis SUMu003]
 gi|308333495|gb|EFP22346.1| hypothetical protein TMDG_00366 [Mycobacterium tuberculosis SUMu004]
 gi|308337529|gb|EFP26380.1| hypothetical protein TMEG_03328 [Mycobacterium tuberculosis SUMu005]
 gi|308341195|gb|EFP30046.1| hypothetical protein TMFG_03896 [Mycobacterium tuberculosis SUMu006]
 gi|308346042|gb|EFP34893.1| hypothetical protein TMGG_02222 [Mycobacterium tuberculosis SUMu007]
 gi|308349005|gb|EFP37856.1| hypothetical protein TMHG_01845 [Mycobacterium tuberculosis SUMu008]
 gi|308353730|gb|EFP42581.1| hypothetical protein TMIG_03978 [Mycobacterium tuberculosis SUMu009]
 gi|308357573|gb|EFP46424.1| hypothetical protein TMJG_01631 [Mycobacterium tuberculosis SUMu010]
 gi|308361516|gb|EFP50367.1| hypothetical protein TMKG_03080 [Mycobacterium tuberculosis SUMu011]
 gi|308365130|gb|EFP53981.1| hypothetical protein TMLG_02377 [Mycobacterium tuberculosis SUMu012]
 gi|323718761|gb|EGB27920.1| hypothetical protein TMMG_02660 [Mycobacterium tuberculosis CDC1551A]
 gi|339295520|gb|AEJ47631.1| hypothetical protein CCDC5079_2441 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299138|gb|AEJ51248.1| hypothetical protein CCDC5180_2411 [Mycobacterium tuberculosis 
CCDC5180]
Length=154

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  101  MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  142


>gi|294994257|ref|ZP_06799948.1| hypothetical protein Mtub2_07013 [Mycobacterium tuberculosis 
210]
Length=119

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  66   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  107


>gi|289762821|ref|ZP_06522199.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289710327|gb|EFD74343.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=154

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  101  MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  142


>gi|311277575|ref|YP_003939806.1| aspartate kinase [Enterobacter cloacae SCF1]
 gi|308746770|gb|ADO46522.1| aspartate kinase [Enterobacter cloacae SCF1]
Length=453

 Score = 34.7 bits (78),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 18/100 (18%)

Query  29   KRIDNATRSDDKEIRLFAEKQMAPLAAGSPSWNGRKP----SSGNRKA-ATMAARLDILA  83
            KRIDN + S+ +E+  F  K + P A   P+     P    +SGN  A  T+  R D+L 
Sbjct  242  KRIDNLSFSEAREMATFGAKVLHP-ATLLPAMRKNIPVFVGASGNPSAGGTLVCR-DVL-  298

Query  84   WGPWAPSQNRSV-VRRKQTLL-----SAQPSASPPAPTGG  117
                 PS+ R++ VRR+QTLL      AQP+    A T G
Sbjct  299  ----EPSRYRALAVRRRQTLLKLSSVKAQPAHRFLADTFG  334


>gi|321449205|gb|EFX61778.1| hypothetical protein DAPPUDRAFT_271900 [Daphnia pulex]
Length=203

 Score = 34.3 bits (77),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 35/66 (54%), Gaps = 8/66 (12%)

Query  59   SWNGRKPSSGNRKAATMAARLDILAWGPWAPSQNRSVVRRKQTLLSAQPSASPPAPTGGS  118
            S+NG +PS   + A T AA+L I    PW P+QN++  R+ +     +  + P   T G 
Sbjct  107  SFNGSRPSM--KSAETSAAKLAITTM-PWCPTQNQAQGRKHK-----RTKSEPQGETSGE  158

Query  119  NESTTQ  124
            +E  TQ
Sbjct  159  SEKKTQ  164



Lambda     K      H
   0.312    0.126    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128142534078


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40