BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1577c

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308376129|ref|ZP_07446149.2|  phage prohead protease, HK97 fam...   339    6e-92
gi|15608715|ref|NP_216093.1|  phiRv1 phage protein [Mycobacterium...   339    8e-92
gi|254366077|ref|ZP_04982122.1|  hypothetical protein TBHG_03409 ...   337    3e-91
gi|289751275|ref|ZP_06510653.1|  phiRv1 phage protein [Mycobacter...   312    1e-83
gi|15609788|ref|NP_217167.1|  phiRv2 prophage protease [Mycobacte...   303    6e-81
gi|306794139|ref|ZP_07432441.1|  phiRv2 phage protease [Mycobacte...   303    7e-81
gi|167967167|ref|ZP_02549444.1|  hypothetical phiRv2 prophage pro...   300    5e-80
gi|289758779|ref|ZP_06518157.1|  phiRv2 prophage protease [Mycoba...   298    2e-79
gi|289753664|ref|ZP_06513042.1|  phiRv1 phage protein [Mycobacter...   293    5e-78
gi|339295522|gb|AEJ47633.1|  phiRv2 prophage protease [Mycobacter...   285    1e-75
gi|289762823|ref|ZP_06522201.1|  conserved hypothetical protein [...   283    5e-75
gi|240172572|ref|ZP_04751231.1|  phiRv2 prophage protease [Mycoba...   263    4e-69
gi|289569613|ref|ZP_06449840.1|  conserved hypothetical protein [...   222    1e-56
gi|289447186|ref|ZP_06436930.1|  LOW QUALITY PROTEIN: phiRv1 phag...   215    2e-54
gi|226366385|ref|YP_002784168.1|  hypothetical protein ROP_69760 ...  89.4    2e-16
gi|23464973|ref|NP_695576.1|  hypothetical protein BL0376 [Bifido...  72.0    3e-11
gi|304393575|ref|ZP_07375503.1|  HK97 family phage prohead protea...  68.9    2e-10
gi|160940773|ref|ZP_02088115.1|  hypothetical protein CLOBOL_0566...  68.6    3e-10
gi|239622571|ref|ZP_04665602.1|  predicted protein [Bifidobacteri...  68.6    3e-10
gi|237794639|ref|YP_002862191.1|  caudovirus prohead protease [Cl...  67.8    5e-10
gi|306818206|ref|ZP_07451937.1|  conserved hypothetical protein [...  67.8    5e-10
gi|288871067|ref|ZP_06116222.2|  peptidase U35, phage prohead HK9...  67.0    8e-10
gi|92116966|ref|YP_576695.1|  peptidase U35, phage prohead HK97 [...  66.6    1e-09
gi|344923094|ref|ZP_08776555.1|  HK97 family phage prohead protea...  65.9    2e-09
gi|68171346|ref|ZP_00544743.1|  Peptidase U35, phage prohead HK97...  65.5    3e-09
gi|169829600|ref|YP_001699758.1|  major capsid protein [Lysinibac...  65.5    3e-09
gi|299133520|ref|ZP_07026714.1|  phage prohead protease, HK97 fam...  64.3    6e-09
gi|226307462|ref|YP_002767422.1|  hypothetical protein RER_39750 ...  63.2    1e-08
gi|326385264|ref|ZP_08206927.1|  hypothetical protein SCNU_20062 ...  63.2    1e-08
gi|39934956|ref|NP_947232.1|  phage protease [Rhodopseudomonas pa...  62.8    2e-08
gi|92117265|ref|YP_576994.1|  peptidase U35, phage prohead HK97 [...  62.4    2e-08
gi|338973923|ref|ZP_08629285.1|  HK97 family phage prohead protea...  62.0    3e-08
gi|192290487|ref|YP_001991092.1|  phage prohead protease, HK97 fa...  62.0    3e-08
gi|338739213|ref|YP_004676175.1|  Phage prohead protease, HK97 fa...  62.0    3e-08
gi|163737523|ref|ZP_02144940.1|  phage prohead protease, HK97 fam...  61.6    3e-08
gi|209885726|ref|YP_002289583.1|  phage prohead protease, HK97 fa...  61.2    5e-08
gi|300022634|ref|YP_003755245.1|  phage prohead protease HK97 fam...  61.2    6e-08
gi|303251433|ref|ZP_07337609.1|  Putative prohead protease (GP4) ...  60.8    6e-08
gi|91976446|ref|YP_569105.1|  peptidase U35, phage prohead HK97 [...  60.8    6e-08
gi|190150089|ref|YP_001968614.1|  prohead protease (GP4) [Actinob...  60.8    6e-08
gi|171741106|ref|ZP_02916913.1|  hypothetical protein BIFDEN_0017...  60.8    6e-08
gi|254419794|ref|ZP_05033518.1|  phage prohead protease, HK97 fam...  60.5    7e-08
gi|75675356|ref|YP_317777.1|  peptidase U35, phage prohead HK97 [...  60.5    8e-08
gi|86750594|ref|YP_487090.1|  peptidase U35, phage prohead HK97 [...  60.1    1e-07
gi|336031592|gb|AEH77524.1|  prophage LambdaBa04, prohead proteas...  60.1    1e-07
gi|168697980|ref|ZP_02730257.1|  pro-head protease [Gemmata obscu...  60.1    1e-07
gi|326575947|gb|EGE25870.1|  prohead protease [Moraxella catarrha...  60.1    1e-07
gi|298290715|ref|YP_003692654.1|  phage prohead protease HK97 fam...  59.7    1e-07
gi|212715329|ref|ZP_03323457.1|  hypothetical protein BIFCAT_0022...  59.7    1e-07
gi|167855084|ref|ZP_02477857.1|  putative head maturation proteas...  59.7    1e-07


>gi|308376129|ref|ZP_07446149.2| phage prohead protease, HK97 family [Mycobacterium tuberculosis 
SUMu007]
 gi|308344235|gb|EFP33086.1| phage prohead protease, HK97 family [Mycobacterium tuberculosis 
SUMu007]
Length=177

 Score =  339 bits (870),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%)

Query  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60
            MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA
Sbjct  8    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  67

Query  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120
            RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD
Sbjct  68   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  127

Query  121  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW
Sbjct  128  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  177


>gi|15608715|ref|NP_216093.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|15843071|ref|NP_338108.1| hypothetical protein MT3573.8 [Mycobacterium tuberculosis CDC1551]
 gi|31792763|ref|NP_855256.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
 33 more sequence titles
 Length=170

 Score =  339 bits (869),  Expect = 8e-92, Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%)

Query  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60
            MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA
Sbjct  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60

Query  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120
            RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD
Sbjct  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120

Query  121  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW
Sbjct  121  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170


>gi|254366077|ref|ZP_04982122.1| hypothetical protein TBHG_03409 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|134151590|gb|EBA43635.1| hypothetical protein TBHG_03409 [Mycobacterium tuberculosis str. 
Haarlem]
Length=186

 Score =  337 bits (865),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 169/170 (99%), Positives = 170/170 (100%), Gaps = 0/170 (0%)

Query  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60
            MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHK+KLLVSHDA
Sbjct  17   MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKVKLLVSHDA  76

Query  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120
            RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD
Sbjct  77   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  136

Query  121  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW
Sbjct  137  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  186


>gi|289751275|ref|ZP_06510653.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289691862|gb|EFD59291.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=170

 Score =  312 bits (799),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 157/170 (93%), Positives = 162/170 (96%), Gaps = 0/170 (0%)

Query  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60
            MAELRSGEGRTV+G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+KLLVSHDA
Sbjct  1    MAELRSGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDA  60

Query  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120
            RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD
Sbjct  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120

Query  121  VLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            VLVRVEAALLEVSLTGVPAY GAQIAGVRAESL VVSRS AEA L+L+DW
Sbjct  121  VLVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW  170


>gi|15609788|ref|NP_217167.1| phiRv2 prophage protease [Mycobacterium tuberculosis H37Rv]
 gi|15842191|ref|NP_337228.1| phage prohead protease, putative [Mycobacterium tuberculosis 
CDC1551]
 gi|148662493|ref|YP_001284016.1| putative phage prohead protease [Mycobacterium tuberculosis H37Ra]
 35 more sequence titles
 Length=177

 Score =  303 bits (776),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 151/169 (90%), Positives = 160/169 (95%), Gaps = 0/169 (0%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            AELR GEGRTV+G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+KLLVSHDAR
Sbjct  9    AELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDAR  68

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREEPHGLFGAFE+A+TPDGDEALANVKAGVVD+FSVGFRPIRDRREGDV
Sbjct  69   TRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDV  128

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            +VRVEAALLEVSLTGVPAY GAQIAGVRAESL VVSRS AEA L+L+DW
Sbjct  129  IVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW  177


>gi|306794139|ref|ZP_07432441.1| phiRv2 phage protease [Mycobacterium tuberculosis SUMu005]
 gi|306798555|ref|ZP_07436857.1| phiRv2 phage protease [Mycobacterium tuberculosis SUMu006]
 gi|308371084|ref|ZP_07423780.2| phiRv2 phage protease [Mycobacterium tuberculosis SUMu003]
 18 more sequence titles
 Length=186

 Score =  303 bits (775),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 151/169 (90%), Positives = 160/169 (95%), Gaps = 0/169 (0%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            AELR GEGRTV+G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+KLLVSHDAR
Sbjct  18   AELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDAR  77

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREEPHGLFGAFE+A+TPDGDEALANVKAGVVD+FSVGFRPIRDRREGDV
Sbjct  78   TRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDV  137

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            +VRVEAALLEVSLTGVPAY GAQIAGVRAESL VVSRS AEA L+L+DW
Sbjct  138  IVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW  186


>gi|167967167|ref|ZP_02549444.1| hypothetical phiRv2 prophage protease [Mycobacterium tuberculosis 
H37Ra]
Length=186

 Score =  300 bits (768),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 150/169 (89%), Positives = 159/169 (95%), Gaps = 0/169 (0%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            AELR GEGRTV+G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+K LVSHDAR
Sbjct  18   AELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKRLVSHDAR  77

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREEPHGLFGAFE+A+TPDGDEALANVKAGVVD+FSVGFRPIRDRREGDV
Sbjct  78   TRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDV  137

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            +VRVEAALLEVSLTGVPAY GAQIAGVRAESL VVSRS AEA L+L+DW
Sbjct  138  IVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW  186


>gi|289758779|ref|ZP_06518157.1| phiRv2 prophage protease [Mycobacterium tuberculosis T85]
 gi|289714343|gb|EFD78355.1| phiRv2 prophage protease [Mycobacterium tuberculosis T85]
Length=177

 Score =  298 bits (763),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 148/169 (88%), Positives = 158/169 (94%), Gaps = 0/169 (0%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            AELR GEGRTV+G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+KLLVSHDAR
Sbjct  9    AELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDAR  68

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREEPHGLFGAFE+A+TPDGDEALANVKAGVVD+FSVGFRPIRDRREGDV
Sbjct  69   TRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDV  128

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            +VRVEAALLEVSLTGVPAY GAQIAGVRAESL VVSRS   + L+L+DW
Sbjct  129  IVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLGRSRLALMDW  177


>gi|289753664|ref|ZP_06513042.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|289694251|gb|EFD61680.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
Length=150

 Score =  293 bits (751),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 146/147 (99%), Positives = 147/147 (100%), Gaps = 0/147 (0%)

Query  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60
            MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA
Sbjct  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60

Query  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120
            RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD
Sbjct  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120

Query  121  VLVRVEAALLEVSLTGVPAYSGAQIAG  147
            VLVRVEAALLEVSLTGVPAYSGA+IAG
Sbjct  121  VLVRVEAALLEVSLTGVPAYSGAKIAG  147


>gi|339295522|gb|AEJ47633.1| phiRv2 prophage protease [Mycobacterium tuberculosis CCDC5079]
 gi|339299140|gb|AEJ51250.1| phiRv2 prophage protease [Mycobacterium tuberculosis CCDC5180]
Length=159

 Score =  285 bits (730),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 141/159 (89%), Positives = 151/159 (95%), Gaps = 0/159 (0%)

Query  12   VHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVE  71
            ++G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+KLLVSHDARTRYPVGRAVE
Sbjct  1    MYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDARTRYPVGRAVE  60

Query  72   LREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRVEAALLE  131
            LREEPHGLFGAFE+A+TPDGDEALANVKAGVVD+FSVGFRPIRDRREGDV+VRVEAALLE
Sbjct  61   LREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDVIVRVEAALLE  120

Query  132  VSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            VSLTGVPAY GAQIAGVRAESL VVSRS AEA L+L+DW
Sbjct  121  VSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW  159


>gi|289762823|ref|ZP_06522201.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289710329|gb|EFD74345.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=179

 Score =  283 bits (725),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 141/156 (91%), Positives = 149/156 (96%), Gaps = 0/156 (0%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            AELR GEGRTV+G IVPY E TTVRD DGEF+EMFAPGAFRRSIAERGHK+KLLVSHDAR
Sbjct  16   AELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDAR  75

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREEPHGLFGAFE+A+TPDGDEALANVKAGVVD+FSVGFRPIRDRREGDV
Sbjct  76   TRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDV  135

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVS  157
            +VRVEAALLEVSLTGVPAY GAQIAGVRAESL VV+
Sbjct  136  IVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVT  171


>gi|240172572|ref|ZP_04751231.1| phiRv2 prophage protease [Mycobacterium kansasii ATCC 12478]
Length=176

 Score =  263 bits (673),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 135/169 (80%), Positives = 148/169 (88%), Gaps = 1/169 (0%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            AELRSG GRTV GT+VPY E  TVRDFDGE++E FAPGAF+RSIAERGHKLKLLVSHD+R
Sbjct  9    AELRSGTGRTVFGTVVPYGEEITVRDFDGEYRERFAPGAFQRSIAERGHKLKLLVSHDSR  68

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREE  GLF AFEIA+T DGDEALANV+AGVVDSFSVGFRPIRDRRE  V
Sbjct  69   TRYPVGRAVELREERFGLFAAFEIANTRDGDEALANVRAGVVDSFSVGFRPIRDRRENGV  128

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            +VRVEAALLEVSLTG+PAY  A+IAGVR+E L V+ RS A A + LLDW
Sbjct  129  VVRVEAALLEVSLTGIPAYPSAEIAGVRSEQL-VIPRSVALARIQLLDW  176


>gi|289569613|ref|ZP_06449840.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289543367|gb|EFD47015.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=159

 Score =  222 bits (566),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 115/138 (84%), Positives = 118/138 (86%), Gaps = 5/138 (3%)

Query  1    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  60
            MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA
Sbjct  8    MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDA  67

Query  61   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD  120
            RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSV    + D R G 
Sbjct  68   RTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSV----VSD-RSGT  122

Query  121  VLVRVEAALLEVSLTGVP  138
            V      A    ++ G P
Sbjct  123  VAKGCAGARRSAAVRGFP  140


>gi|289447186|ref|ZP_06436930.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|289420144|gb|EFD17345.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis 
CPHL_A]
Length=109

 Score =  215 bits (547),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
            TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV
Sbjct  1    TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  60

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  170
            LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW
Sbjct  61   LVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW  109


>gi|226366385|ref|YP_002784168.1| hypothetical protein ROP_69760 [Rhodococcus opacus B4]
 gi|226244875|dbj|BAH55223.1| hypothetical protein [Rhodococcus opacus B4]
Length=505

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 57/148 (39%), Positives = 76/148 (52%), Gaps = 10/148 (6%)

Query  2    AELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDAR  61
            A +   E R V G  VPY +   +    G FQE    GAF  +       + LL  HD R
Sbjct  10   ARMSDVEMRQVTGLAVPYGQTIDL----GGFQERVERGAFDTT-----KSVPLLWGHDHR  60

Query  62   TRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDV  121
               P+GR   +R+  HGL     + DT  G+     +KAG V  FS+GF P + R+EGDV
Sbjct  61   D-IPIGRVTAMRDTEHGLEIDAVLNDTDKGENVYRALKAGDVSKFSIGFIPTKSRKEGDV  119

Query  122  LVRVEAALLEVSLTGVPAYSGAQIAGVR  149
            +VR +A L EVS+   PAY+ A +  VR
Sbjct  120  IVREKATLKEVSVVNFPAYTKASVTSVR  147


>gi|23464973|ref|NP_695576.1| hypothetical protein BL0376 [Bifidobacterium longum NCC2705]
 gi|23325571|gb|AAN24212.1| hypothetical protein with similarity to putative maturation protease 
of prophage CP-9 33CE [Bifidobacterium longum NCC2705]
Length=524

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 58/154 (38%), Positives = 81/154 (53%), Gaps = 19/154 (12%)

Query  3    ELR--SGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGA-FRRSIAERGHKLKLLVSHD  59
            ELR   G+G  + G  VP+ +   +  + G  +E FAP   F  +      + KL   HD
Sbjct  14   ELREDQGDGTRIEGIAVPFGQRIGL--WRGAAEE-FAPDCDFGDTT-----RTKLSRDHD  65

Query  60   ARTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIR--DRR  117
                  +G+      E  GL     I+DT +G +A+  ++ GV+DSFSVGF P+    R 
Sbjct  66   RL----IGKVTNATREADGLHITASISDTAEGRDAVQLIRDGVLDSFSVGFMPVTTDKRT  121

Query  118  EGD--VLVRVEAALLEVSLTGVPAYSGAQIAGVR  149
            EGD  V VR    LLEV++TG+PAY+GA I G R
Sbjct  122  EGDTSVYVRRAVKLLEVAVTGIPAYTGAAITGQR  155


>gi|304393575|ref|ZP_07375503.1| HK97 family phage prohead protease [Ahrensia sp. R2A130]
 gi|303294582|gb|EFL88954.1| HK97 family phage prohead protease [Ahrensia sp. R2A130]
Length=223

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 48/133 (37%), Positives = 75/133 (57%), Gaps = 7/133 (5%)

Query  39   GAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIA-DTPDGDEALA  96
            GAFR+S+  RG   +++L  HD  +  P+G  +++RE+  GL     I  DTP G E L 
Sbjct  43   GAFRKSLKVRGVAGVRMLYQHDPAS--PIGTWLDIREDAKGLLVKGRIVEDTPRGAEVLT  100

Query  97   NVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIAGVRAES-L  153
             ++AG VD  S+GF+ IR +  G   VR  +EA L E+S+   P    A+++ V++ +  
Sbjct  101  LMRAGAVDGLSIGFKTIRSKPAGQAGVRSILEADLWEISIVTFPMLPQARVSQVKSGAGQ  160

Query  154  TVVSRSTAEAWLS  166
             + S  T E WL+
Sbjct  161  ALPSVRTFERWLT  173


>gi|160940773|ref|ZP_02088115.1| hypothetical protein CLOBOL_05667 [Clostridium bolteae ATCC BAA-613]
 gi|158436293|gb|EDP14060.1| hypothetical protein CLOBOL_05667 [Clostridium bolteae ATCC BAA-613]
Length=234

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 40/102 (40%), Positives = 62/102 (61%), Gaps = 2/102 (1%)

Query  34   EMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIADTPDGDE  93
            ++  PGAF +++AE   ++K+L  H+     P+GR VELREEP+GLF + +I+DT  G +
Sbjct  37   DIIEPGAFTKTLAEGWERVKVLALHND-CWLPIGRPVELREEPNGLFISGKISDTTMGRD  95

Query  94   ALANVKAGVVDSFSVGFRPIR-DRREGDVLVRVEAALLEVSL  134
                +K GV++  S+G+ PI  D  E  +    E  L EVS+
Sbjct  96   VKVLLKDGVLNELSIGYDPIIFDYDENGIRHLREIKLWEVSV  137


>gi|239622571|ref|ZP_04665602.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 
52486]
 gi|239514568|gb|EEQ54435.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 
52486]
Length=528

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 57/164 (35%), Positives = 76/164 (47%), Gaps = 14/164 (8%)

Query  7    GEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPV  66
            G+GRT+ G  VP+ +   V D  GE +E F P     ++ E     KL   HD      +
Sbjct  19   GDGRTIEGVAVPFGD---VIDVWGE-RETFDPD----TVFEGLDSAKLYYQHDTL----I  66

Query  67   GRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGD-VLVRV  125
            G          GL     IADT  G +A+A +  G +DS SVGF PI DR++ D V  R 
Sbjct  67   GSITSGENREDGLHITARIADTQQGRDAVALLDEGALDSLSVGFVPIEDRKDKDGVTHRR  126

Query  126  EAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRS-TAEAWLSLL  168
            +  LLE SL   PAY  A++   R  +      +  AE W   L
Sbjct  127  KVRLLETSLVSWPAYENAKLTNHRNNNQEETPMTEQAEKWTEAL  170


>gi|237794639|ref|YP_002862191.1| caudovirus prohead protease [Clostridium botulinum Ba4 str. 657]
 gi|229260425|gb|ACQ51458.1| caudovirus prohead protease [Clostridium botulinum Ba4 str. 657]
Length=217

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 53/172 (31%), Positives = 85/172 (50%), Gaps = 15/172 (8%)

Query  3    ELRSG--EGRTVHGTIVPY-NEATTVRDFDGE-FQEMFAPGAFRRSIAERGHKLKLLVSH  58
            E RS   E R++ G    + +E   ++D  G+ F E  +PGAF +++A++     +L++H
Sbjct  9    EFRSTDFEKRSIEGYAAIFSDEYVKLKDRWGDSFYEKVSPGAFLKTLADKTRDKFMLINH  68

Query  59   DARTRYPVGRA---VELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRD  115
            D      VGR    + L E+  GL    E+ +T DG++ L NV+ G++   S GF  I  
Sbjct  69   DWNK--IVGRTNSNLSLEEDTKGLRFTLEVPNTSDGNDLLENVRLGLIKGCSFGFNIINQ  126

Query  116  RREGD---VLVR--VEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAE  162
            +   D      R   E  L EV+ T +PAYS  +I   R+E   +  +   E
Sbjct  127  KTRWDDEWNFYRDITEVDLFEVTATPLPAYSDTEI-NCRSELSNICIKEMRE  177


>gi|306818206|ref|ZP_07451937.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649170|gb|EFM46464.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length=524

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 56/146 (39%), Positives = 79/146 (55%), Gaps = 16/146 (10%)

Query  8    EGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVG  67
            E R + G  VPY++ T +  ++G F E  APGA   ++ + G   KLL  H    R P+G
Sbjct  18   EEREIIGLGVPYDDETEI--WEGFF-ERIAPGAV--TVPKAG--CKLLAEH----RKPIG  66

Query  68   RAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPI--RDRREGDVLVR-  124
              VE R+ P G     +IA+TP GDEAL   +A V    S+GF+ +   D +  D + R 
Sbjct  67   -TVEGRDTPQGWKIIGKIANTPAGDEALELARAAVYTGLSIGFQALEYNDTQAEDGIHRE  125

Query  125  -VEAALLEVSLTGVPAYSGAQIAGVR  149
              +A ++EVSLT  PAY  A +  VR
Sbjct  126  ITKALVMEVSLTPFPAYENATVEKVR  151


>gi|288871067|ref|ZP_06116222.2| peptidase U35, phage prohead HK97 [Clostridium hathewayi DSM 
13479]
 gi|288864928|gb|EFC97226.1| peptidase U35, phage prohead HK97 [Clostridium hathewayi DSM 
13479]
Length=228

 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 40/118 (34%), Positives = 68/118 (58%), Gaps = 2/118 (1%)

Query  34   EMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIADTPDGDE  93
            ++  PGAF +++AE   ++K+L  H+     P+GR +ELRE+ +GLF + +I+DT  G +
Sbjct  30   DIIEPGAFTKTLAEGWERVKILALHN-DCWLPIGRPIELREDANGLFLSAKISDTSMGRD  88

Query  94   ALANVKAGVVDSFSVGFRPIRDRREGDVLVRV-EAALLEVSLTGVPAYSGAQIAGVRA  150
                +K GV++  S+G+ PI    +GD +  + E  L EVS+        A I G ++
Sbjct  89   IKVLLKDGVLNELSIGYDPIVFDYDGDGIRHLREVKLWEVSVVTWAMNPEAVITGYKS  146


>gi|92116966|ref|YP_576695.1| peptidase U35, phage prohead HK97 [Nitrobacter hamburgensis X14]
 gi|91799860|gb|ABE62235.1| prohead peptidase, Unknown type peptidase, MEROPS family U35 
[Nitrobacter hamburgensis X14]
Length=215

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 60/171 (36%), Positives = 86/171 (51%), Gaps = 17/171 (9%)

Query  6    SGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRY  64
            SG+G TV G    + E    RD       M  PGAF +++  RG  K+ +L  HD     
Sbjct  14   SGDG-TVEGYASLFGEIDQARD-------MVMPGAFAQTLKVRGLRKVPMLFQHDPSE--  63

Query  65   PVGRAVELREEPHGLFGAFE-IADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLV  123
            PVG  +ELRE+  GL+     I D     E LA V+AG VD  S+G+R +R + E    V
Sbjct  64   PVGIWLELREDFRGLWARGRLIPDVMRARELLALVEAGAVDGLSIGYRTVRGQIEPRTRV  123

Query  124  R--VEAALLEVSLTGVPAYSGAQIAGVRAESLTVVS--RSTAE-AWLSLLD  169
            R   +  L E+S+   P  +GA++  V+  +L   S  R+ AE  W S+ +
Sbjct  124  RKLYQVDLWEISIVTFPLLAGARVRAVKQAALPPRSLVRTQAEREWRSMTE  174


>gi|344923094|ref|ZP_08776555.1| HK97 family phage prohead protease [Candidatus Odyssella thessalonicensis 
L13]
Length=183

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 47/123 (39%), Positives = 69/123 (57%), Gaps = 8/123 (6%)

Query  33   QEMFAPGAFRRSIAE---RGHKLKLLVSHDARTRYPVGRAVELREEPHGLF-GAFEIADT  88
            QE+ A  AF++S+ +   +G   K+L  HD R   P+G   E+ E+ HGLF     + D 
Sbjct  34   QEIVARRAFQQSLNKWRGKGRLPKMLWQHDQRR--PIGVWDEIYEDEHGLFVKGRLLLDL  91

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRV--EAALLEVSLTGVPAYSGAQIA  146
              G EA + +KAGV+DS S+GF+P+R  ++     RV  E  LLE+SL    A   A+I 
Sbjct  92   AAGREAYSLLKAGVIDSLSIGFKPVRAIKDPKRNARVLEEVDLLEISLVTFAANPDAKIT  151

Query  147  GVR  149
             V+
Sbjct  152  TVK  154


>gi|68171346|ref|ZP_00544743.1| Peptidase U35, phage prohead HK97 [Ehrlichia chaffeensis str. 
Sapulpa]
 gi|88657926|ref|YP_506865.1| HK97 family phage prohead protease [Ehrlichia chaffeensis str. 
Arkansas]
 gi|67999244|gb|EAM85897.1| Peptidase U35, phage prohead HK97 [Ehrlichia chaffeensis str. 
Sapulpa]
 gi|88599383|gb|ABD44852.1| phage prohead protease, HK97 family [Ehrlichia chaffeensis str. 
Arkansas]
Length=177

 Score = 65.5 bits (158),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 39/120 (33%), Positives = 64/120 (54%), Gaps = 6/120 (5%)

Query  33   QEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVELREEPHGLF-GAFEIADTPDG  91
            + +  PGAF  S+ +  HK+KLL  H++    P+G    L E+  GL+  A  + D   G
Sbjct  35   KHIILPGAFSNSV-KNSHKIKLLWQHNSTE--PIGNITSLTEDNIGLYITANLLLDLQKG  91

Query  92   DEALANVKAGVVDSFSVGFRPIRDRREGDVLVRV--EAALLEVSLTGVPAYSGAQIAGVR  149
             EA   +K G++++ S+G+  I D  +    VRV  + +L EVSL   PA   +++  V+
Sbjct  92   KEAYLMIKNGIINALSIGYSIIDDYIDAKTGVRVLKKISLWEVSLVTFPANIYSKVTNVK  151


>gi|169829600|ref|YP_001699758.1| major capsid protein [Lysinibacillus sphaericus C3-41]
 gi|168994088|gb|ACA41628.1| major capsid protein [Lysinibacillus sphaericus C3-41]
Length=485

 Score = 65.5 bits (158),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 44/155 (29%), Positives = 80/155 (52%), Gaps = 16/155 (10%)

Query  5    RSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHD-----  59
            + G G    G    +N  T + D    F+E+ APGAF+R++A  G+ +  L++H+     
Sbjct  12   KEGNGNVAVGYAAVFNSPTDIGDM---FKEVIAPGAFKRALA-TGNDVCCLMNHNWEKIL  67

Query  60   ARTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREG  119
             RT+      ++L E+ HGL    ++ +T DG + +A ++ G +   S GFR + +  + 
Sbjct  68   GRTK---SGTLKLEEDQHGLKFEVDLPNTTDGTDLIALMERGDISQCSFGFRIVDESWDH  124

Query  120  DVLVRV----EAALLEVSLTGVPAYSGAQIAGVRA  150
             V+  +    E  L EVS+  +PAY   +++  R+
Sbjct  125  SVVPSLRTIHEVELYEVSIVTIPAYEDTEVSLTRS  159


>gi|299133520|ref|ZP_07026714.1| phage prohead protease, HK97 family [Afipia sp. 1NLS2]
 gi|298591356|gb|EFI51557.1| phage prohead protease, HK97 family [Afipia sp. 1NLS2]
Length=163

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 41/124 (34%), Positives = 67/124 (55%), Gaps = 6/124 (4%)

Query  33   QEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADTPD  90
            ++M  PGAF +++  RG  ++ +L  HD     PVG  +ELRE+  GL+     I +   
Sbjct  33   RDMVMPGAFTQTLQNRGLRRIPMLFQHDPSE--PVGIWLELREDWRGLWARGRLIPEVAR  90

Query  91   GDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIAGV  148
            G E LA V+ G +D  S+G+R +R R +    +R   +  L EVS+   P  +GA++  V
Sbjct  91   GRELLALVREGAIDGLSIGYRTVRGRIDPKTRIRRLYQVDLWEVSIVTFPLLTGARVHAV  150

Query  149  RAES  152
            +  +
Sbjct  151  KGRA  154


>gi|226307462|ref|YP_002767422.1| hypothetical protein RER_39750 [Rhodococcus erythropolis PR4]
 gi|226186579|dbj|BAH34683.1| hypothetical protein RER_39750 [Rhodococcus erythropolis PR4]
Length=205

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 52/187 (28%), Positives = 83/187 (45%), Gaps = 25/187 (13%)

Query  7    GEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDART-RYP  65
            G+G T+ G    +++ T +  ++G F E  + GAF++++ ER   ++     DART   P
Sbjct  19   GDGLTLEGYAAVFDQDTEINSYEGNFIERISKGAFKKTLTERTPVMQFDHGRDARTGSVP  78

Query  66   VGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRD---RREGDVL  122
            +G   ELRE+  GL+ A  + D P  +     + +G +   S  FR I+D      G  L
Sbjct  79   IGTFTELREDMRGLWVAGRLHDNPVVEPIRQAIASGAISGMSFRFRVIQDVWHDASGKAL  138

Query  123  VRVEA--------------------ALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAE  162
               EA                    AL E      PAY+G  + GVR+++  +     A 
Sbjct  139  NSAEAQRLIYEPGSRGPIFRTIKEVALAEAGPVVFPAYAGTSV-GVRSDNEPITQAERAA  197

Query  163  AWLSLLD  169
              L LL+
Sbjct  198  MRLRLLE  204


>gi|326385264|ref|ZP_08206927.1| hypothetical protein SCNU_20062 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326196007|gb|EGD53218.1| hypothetical protein SCNU_20062 [Gordonia neofelifaecis NRRL 
B-59395]
Length=657

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 51/153 (34%), Positives = 74/153 (49%), Gaps = 19/153 (12%)

Query  4    LRSGEGRTVHGTIVPYNE--ATTVRDFDGEFQEMFAPGAFR--RSIAERGHKLKLLVSHD  59
            L S   R V G ++P+N+  ATT             PGA R  R I     ++KLL  H 
Sbjct  127  LASESERVVSGLVIPWNQQGATTAGAL------TIPPGAVRVPRDIG----RVKLLFKHT  176

Query  60   ARTRY-PVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRRE  118
                + PVGRA+    +  GL  +F IA TPDGD A+  V+ GV D+FS   R ++    
Sbjct  177  GTEGHKPVGRALSYEPKADGLHMSFAIARTPDGDAAIDQVREGVFDAFSAELRAVKK---  233

Query  119  GDVLVRVEAALLEVSLTGVPAYSGAQIAGVRAE  151
             +     ++ L  V+L   PA+  A++  + AE
Sbjct  234  -NATTVQDSILTGVALVDRPAFDDARVHNLNAE  265


>gi|39934956|ref|NP_947232.1| phage protease [Rhodopseudomonas palustris CGA009]
 gi|39648807|emb|CAE27328.1| possible phage protease, R. capsulatus GTA orfg4 homologue [Rhodopseudomonas 
palustris CGA009]
Length=225

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 44/123 (36%), Positives = 68/123 (56%), Gaps = 6/123 (4%)

Query  31   EFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADT  88
            + ++M  PGAF +++ +RG  K+ +L  HD     PVG  +EL E+  GL      I D 
Sbjct  41   QARDMVMPGAFTQTLKQRGLRKIPMLFQHDPAE--PVGVWLELAEDLRGLRARGRLIPDV  98

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIA  146
              G E LA ++AG +D  S+G+R +R + +    VR   +  L E+S+   P  SGA+IA
Sbjct  99   ARGRELLALLRAGAIDGLSIGYRTVRGQIDPRTRVRRLYQVDLWEISIVTFPLLSGARIA  158

Query  147  GVR  149
             V+
Sbjct  159  TVK  161


>gi|92117265|ref|YP_576994.1| peptidase U35, phage prohead HK97 [Nitrobacter hamburgensis X14]
 gi|91800159|gb|ABE62534.1| prohead peptidase, Unknown type peptidase, MEROPS family U35 
[Nitrobacter hamburgensis X14]
Length=176

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 43/145 (30%), Positives = 75/145 (52%), Gaps = 9/145 (6%)

Query  14   GTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAER-GHKLKLLVSHDARTRYPVGRAVEL  72
            GT   Y    +V D     +++    AF++S+ +R   K+K+L  HD     P+G+ + L
Sbjct  20   GTFTGY---ASVFDVVDSHKDIVVKSAFKKSLVKRPAAKVKMLREHDQTE--PIGKWLSL  74

Query  73   REEPHGLFGAFE-IADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRV--EAAL  129
             E+  GL    + I  T  G E    +KAG++DS S+G+R +RDR +     R+  +  L
Sbjct  75   VEDDRGLKATGQLILGTTKGSETYKLMKAGLLDSLSIGYRTVRDRMDRTKGARILEQVDL  134

Query  130  LEVSLTGVPAYSGAQIAGVRAESLT  154
             E+S+   P+ + + +  V++ S T
Sbjct  135  WEISVVTFPSNTESTVTAVKSNSAT  159


>gi|338973923|ref|ZP_08629285.1| HK97 family phage prohead protease [Bradyrhizobiaceae bacterium 
SG-6C]
 gi|338232650|gb|EGP07778.1| HK97 family phage prohead protease [Bradyrhizobiaceae bacterium 
SG-6C]
Length=171

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 46/139 (34%), Positives = 74/139 (54%), Gaps = 10/139 (7%)

Query  33   QEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADTPD  90
            ++M  PGAF +++A+RG  K+ +L  HD     PVG  ++L E+  GL+     I D   
Sbjct  33   RDMVMPGAFAKTLAQRGLRKIPMLFQHDPAE--PVGIWLDLHEDFRGLWARGRLIPDVAR  90

Query  91   GDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIAGV  148
            G E  A V+ G +D  S+G+R +R + +    VR   +  L EVS+   P  +GA++  V
Sbjct  91   GRELFALVEQGAIDGLSIGYRTVRGQIDPKTRVRKLYQVDLWEVSIVTFPLLAGARVRAV  150

Query  149  RAESLTVVS----RSTAEA  163
            +  + +  S    R+ AEA
Sbjct  151  KGRTPSQQSPARFRNHAEA  169


>gi|192290487|ref|YP_001991092.1| phage prohead protease, HK97 family [Rhodopseudomonas palustris 
TIE-1]
 gi|192284236|gb|ACF00617.1| phage prohead protease, HK97 family [Rhodopseudomonas palustris 
TIE-1]
Length=248

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 43/123 (35%), Positives = 68/123 (56%), Gaps = 6/123 (4%)

Query  31   EFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADT  88
            + ++M  PGAF +++ +RG  K+ +L  HD     PVG  +EL E+  GL      I D 
Sbjct  41   QARDMVMPGAFTQTLKQRGLRKIPMLFQHDPAE--PVGVWLELAEDLRGLRARGRLIPDV  98

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIA  146
              G E LA ++AG +D  S+G+R +R + +    VR   +  L E+S+   P  +GA+IA
Sbjct  99   ARGRELLALLRAGAIDGLSIGYRTVRGQIDPKTRVRRLYQVDLWEISIVTFPLLAGARIA  158

Query  147  GVR  149
             V+
Sbjct  159  TVK  161


>gi|338739213|ref|YP_004676175.1| Phage prohead protease, HK97 family [Hyphomicrobium sp. MC1]
 gi|337759776|emb|CCB65607.1| Phage prohead protease, HK97 family [Hyphomicrobium sp. MC1]
Length=234

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 45/141 (32%), Positives = 72/141 (52%), Gaps = 10/141 (7%)

Query  33   QEMFAPGAFRRSIAERGH-KLKLLVSHDARTRYPVGRAVELREEPHGLF--GAFEIADTP  89
             ++ APGAFR S+  RG  ++K+L  HD     P+G   E+RE+  GL+  G    A   
Sbjct  46   HDVIAPGAFRDSLLNRGAARIKMLFQHDPGE--PIGVWDEIREDARGLYVRGRLMTA-VA  102

Query  90   DGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRV--EAALLEVSLTGVPAYSGAQIAG  147
               E  A ++AG +D  S+GF+ ++ RR+    VR   +  L E+S+   P   GA++  
Sbjct  103  KAREVFALMRAGALDGLSIGFKAVKARRDASTGVRRLEKVDLWEISVVTFPMLPGARVES  162

Query  148  VRAESLTVVSRSTA--EAWLS  166
            V+     V + +    E WL+
Sbjct  163  VKTRPFAVTAPTMREFERWLT  183


>gi|163737523|ref|ZP_02144940.1| phage prohead protease, HK97 family protein [Phaeobacter gallaeciensis 
BS107]
 gi|161389049|gb|EDQ13401.1| phage prohead protease, HK97 family protein [Phaeobacter gallaeciensis 
BS107]
Length=220

 Score = 61.6 bits (148),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 44/118 (38%), Positives = 66/118 (56%), Gaps = 7/118 (5%)

Query  34   EMFAPGAFRRSI---AERGHKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEI-ADTP  89
            ++ APGA+  S+   A +G K+K+L  HD    +P+G   ELRE+  GL+    I  +  
Sbjct  36   DIVAPGAYAASLSKLAAQGRKVKMLWQHD--PSHPIGVWEELREDDRGLWVKGRILTEVE  93

Query  90   DGDEALANVKAGVVDSFSVGFRPIRDRR-EGDVLVRVEAALLEVSLTGVPAYSGAQIA  146
             G EA+A +KAG +D  S+G+R I  ++ +G   V  E  L EVSL   P    A++A
Sbjct  94   KGREAVALIKAGSIDGLSIGYRTISAQKDDGGNRVLQEVDLWEVSLVTFPMLPTARVA  151


>gi|209885726|ref|YP_002289583.1| phage prohead protease, HK97 family [Oligotropha carboxidovorans 
OM5]
 gi|337740688|ref|YP_004632416.1| head maturation protease [Oligotropha carboxidovorans OM5]
 gi|209873922|gb|ACI93718.1| phage prohead protease, HK97 family [Oligotropha carboxidovorans 
OM5]
 gi|336094773|gb|AEI02599.1| putative head maturation protease [Oligotropha carboxidovorans 
OM4]
 gi|336098352|gb|AEI06175.1| putative head maturation protease [Oligotropha carboxidovorans 
OM5]
Length=171

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 40/124 (33%), Positives = 67/124 (55%), Gaps = 6/124 (4%)

Query  31   EFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADT  88
            + ++M  PGAF +++  RG  ++ +L  HD     PVG  +ELRE+  GL+     I + 
Sbjct  31   QARDMVMPGAFTQTLQSRGLRRIPMLFQHDPSE--PVGIWLELREDWRGLWARGRLIPEV  88

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIA  146
              G E +A V  G +D  S+G+R +R R +    +R   +  L EVS+   P  +GA++ 
Sbjct  89   ARGRELMALVGEGAIDGLSIGYRTVRGRIDPKTRIRRLYQVDLWEVSIVTFPLLAGARVH  148

Query  147  GVRA  150
             V++
Sbjct  149  AVKS  152


>gi|300022634|ref|YP_003755245.1| phage prohead protease HK97 family [Hyphomicrobium denitrificans 
ATCC 51888]
 gi|299524455|gb|ADJ22924.1| phage prohead protease, HK97 family [Hyphomicrobium denitrificans 
ATCC 51888]
Length=234

 Score = 61.2 bits (147),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 45/141 (32%), Positives = 72/141 (52%), Gaps = 10/141 (7%)

Query  33   QEMFAPGAFRRSIAERGH-KLKLLVSHDARTRYPVGRAVELREEPHGLF--GAFEIADTP  89
             ++ APGAFR S+A RG  ++K+L  HD     P+G   E+ E+  GL+  G    A   
Sbjct  46   HDVIAPGAFRESLASRGAARIKMLFQHDPAE--PIGVWDEIHEDARGLYVRGRLMTA-VS  102

Query  90   DGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRV--EAALLEVSLTGVPAYSGAQIAG  147
               E LA ++AG +D  S+GF+ ++ RR+    VR   +  L E+S+   P   GA++  
Sbjct  103  KAREVLALMRAGALDGLSIGFKTVKARRDAASGVRRLEKIDLWEISVVTFPMLPGARVQS  162

Query  148  VRAESLTVVSRSTA--EAWLS  166
            V+       + +    E WL+
Sbjct  163  VKTRPFATAAPTMRDFERWLT  183


>gi|303251433|ref|ZP_07337609.1| Putative prohead protease (GP4) [Actinobacillus pleuropneumoniae 
serovar 6 str. Femo]
 gi|307252331|ref|ZP_07534228.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
6 str. Femo]
 gi|307261241|ref|ZP_07542916.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
12 str. 1096]
 gi|302649665|gb|EFL79845.1| Putative prohead protease (GP4) [Actinobacillus pleuropneumoniae 
serovar 6 str. Femo]
 gi|306860253|gb|EFM92269.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
6 str. Femo]
 gi|306868972|gb|EFN00774.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
12 str. 1096]
Length=190

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 52/175 (30%), Positives = 86/175 (50%), Gaps = 20/175 (11%)

Query  8    EGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVG  67
            E RT+ G +V +N+ + V    GEF E FAP AF +S+   G  ++ L  HD  T+  +G
Sbjct  18   ESRTLSGYVVQWNKPSEV--LWGEFIETFAPNAFTKSL-NGGGDVRALFEHDY-TKL-LG  72

Query  68   R----AVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRP----IRDRREG  119
            R     + L E+  GL    ++ +T  G++ L +V+ G +   S GF P      + +E 
Sbjct  73   RTSSNTLTLAEDNQGLRFRIDLPNTQLGNDILESVRRGDISGMSFGFLPEVEEWDETKEP  132

Query  120  DVLVRVEAALLEVSLTGVPAY--SGAQIA-----GVRAESLTVVSRSTAEAWLSL  167
             +    +A L E+++T +PAY  S  +IA       + E   +      + WL+L
Sbjct  133  ALRTIKQAQLFEITVTSIPAYPDSSLEIAKRSRIAAKREQKNINQDEMRKNWLTL  187


>gi|91976446|ref|YP_569105.1| peptidase U35, phage prohead HK97 [Rhodopseudomonas palustris 
BisB5]
 gi|91682902|gb|ABE39204.1| prohead peptidase. Unknown type peptidase. MEROPS family U35 
[Rhodopseudomonas palustris BisB5]
Length=235

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 44/137 (33%), Positives = 70/137 (52%), Gaps = 6/137 (4%)

Query  31   EFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADT  88
            + ++M  PGAF +++  RG  K+ +L  HD     PVG  +EL E+  GL      I D 
Sbjct  35   QARDMVMPGAFTQTLKSRGLRKIPMLFQHDPSE--PVGVWLELAEDFRGLRARGRLIPDV  92

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIA  146
              G E LA ++ G +D  S+G+R +R   +    VR   +  L E+S+   P  +GA+++
Sbjct  93   ARGRELLALLREGAIDGLSIGYRTVRGIIDPKTRVRRLYQVDLWEISIVTFPLLNGARVS  152

Query  147  GVRAESLTVVSRSTAEA  163
             V+      + R  AEA
Sbjct  153  TVKQTPRQSLQRRAAEA  169


>gi|190150089|ref|YP_001968614.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
7 str. AP76]
 gi|307263422|ref|ZP_07545038.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
13 str. N273]
 gi|189915220|gb|ACE61472.1| Putative prohead protease (GP4) [Actinobacillus pleuropneumoniae 
serovar 7 str. AP76]
 gi|306871300|gb|EFN03028.1| prohead protease (GP4) [Actinobacillus pleuropneumoniae serovar 
13 str. N273]
Length=190

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 44/146 (31%), Positives = 74/146 (51%), Gaps = 13/146 (8%)

Query  8    EGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVG  67
            E RT+ G +V +N+ + V    GEF E FAP AF +S+   G  ++ L  HD      +G
Sbjct  18   ESRTLSGYVVQWNKPSEV--LWGEFIETFAPNAFTKSL-NGGGDVRALFEHDYTKL--LG  72

Query  68   R----AVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRP----IRDRREG  119
            R     + L E+  GL    ++ +T  G++ L +V+ G +   S GF P      + +E 
Sbjct  73   RTSSNTLTLAEDNQGLCFRIDLPNTQLGNDILESVRRGDISGMSFGFLPEVEEWDETKEP  132

Query  120  DVLVRVEAALLEVSLTGVPAYSGAQI  145
             +    +A L E+++T +PAY  + +
Sbjct  133  ALRTIKQAQLFEITVTSIPAYPDSSL  158


>gi|171741106|ref|ZP_02916913.1| hypothetical protein BIFDEN_00173 [Bifidobacterium dentium ATCC 
27678]
 gi|171276720|gb|EDT44381.1| hypothetical protein BIFDEN_00173 [Bifidobacterium dentium ATCC 
27678]
Length=520

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 47/144 (33%), Positives = 68/144 (48%), Gaps = 15/144 (10%)

Query  8    EGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRR-SIAERGHKLKLLVSHDARTRYPV  66
            +GRT+ G  VPY +   +  +DG       P  F R  + +   + KL   H       +
Sbjct  20   DGRTLEGIAVPYGDV--IDTWDG-------PETFDRDCVFDDLDQAKLCYQHGE----VI  66

Query  67   GRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRRE-GDVLVRV  125
            GR +       GL     ++DT  G +A+  V+ GV+DSFSVGF PI   R+   +  R 
Sbjct  67   GRIIGGESREDGLHITARVSDTAKGRDAVTLVRDGVLDSFSVGFIPIESERDKAGITHRR  126

Query  126  EAALLEVSLTGVPAYSGAQIAGVR  149
               LLE S+   PAY  A++ G R
Sbjct  127  RVRLLETSIVSWPAYQNARLTGQR  150


>gi|254419794|ref|ZP_05033518.1| phage prohead protease, HK97 family [Brevundimonas sp. BAL3]
 gi|196185971|gb|EDX80947.1| phage prohead protease, HK97 family [Brevundimonas sp. BAL3]
Length=133

 Score = 60.5 bits (145),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 47/132 (36%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query  19   YNEATTVRDFDGEFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPH  77
            Y     V D +G+  +    GAF  S+A+ G   +++L  HD R   PVG    + E+  
Sbjct  5    YASLWGVADLNGDVVQ---AGAFADSLAKTGVEGVRMLSQHDGRA--PVGVWDRIMEDAR  59

Query  78   GLFGAFEIAD-TPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRVEAALLEVSLTG  136
            GLF    IAD +P+   A A  +AG +D  S+G+R  R RR+G + V     L EVSL  
Sbjct  60   GLFVRGRIADWSPEARFAAALSRAGAMDGLSIGYRTARARRQGRLRVLSGVELWEVSLVT  119

Query  137  VPAYSGAQIAGV  148
             P   GA+   V
Sbjct  120  FPMLPGARFRAV  131


>gi|75675356|ref|YP_317777.1| peptidase U35, phage prohead HK97 [Nitrobacter winogradskyi Nb-255]
 gi|74420226|gb|ABA04425.1| prohead peptidase, Unknown type peptidase, MEROPS family U35 
[Nitrobacter winogradskyi Nb-255]
Length=215

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 42/123 (35%), Positives = 67/123 (55%), Gaps = 6/123 (4%)

Query  31   EFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADT  88
            + ++M  PGAF +++  RG  ++ +L  HD     PVG  +EL E+  GL+   + I D 
Sbjct  31   QARDMMMPGAFTQTLKTRGLRRIPMLFQHDPAE--PVGVWLELHEDFRGLWARGKLIPDV  88

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIA  146
                E L+ V+AG VD  S+G+R +R R E    VR   +  L E+S+   P  +GA++ 
Sbjct  89   TRARELLSLVEAGAVDGLSIGYRTVRGRIEPRTRVRHLHQVDLWEISIVTFPLLAGARVR  148

Query  147  GVR  149
             V+
Sbjct  149  AVK  151


>gi|86750594|ref|YP_487090.1| peptidase U35, phage prohead HK97 [Rhodopseudomonas palustris 
HaA2]
 gi|86573622|gb|ABD08179.1| prohead peptidase. Unknown type peptidase. MEROPS family U35 
[Rhodopseudomonas palustris HaA2]
Length=240

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 45/142 (32%), Positives = 73/142 (52%), Gaps = 7/142 (4%)

Query  31   EFQEMFAPGAFRRSIAERG-HKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFE-IADT  88
            + ++M  PGAF +++ +RG  K+ +L  HD     PVG  ++L E+  GL      I D 
Sbjct  35   QARDMVMPGAFAQTLKQRGLRKIPMLFQHDPAE--PVGIWLDLVEDFRGLRARGRLIPDV  92

Query  89   PDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIA  146
              G E LA ++ G +D  S+G+R +R + +    VR   +  L E+S+   P   GA++ 
Sbjct  93   ARGRELLALLREGAIDGLSIGYRTVRGQIDPKTRVRRLYQVDLWEISIVTFPLLQGARVQ  152

Query  147  GVRAESLTVVSRSTAE-AWLSL  167
             V+      + R  AE AW S+
Sbjct  153  TVKQTPPPSLQRRAAEAAWRSV  174


>gi|336031592|gb|AEH77524.1| prophage LambdaBa04, prohead protease, putative [Sinorhizobium 
meliloti SM11]
Length=169

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 59/162 (37%), Positives = 85/162 (53%), Gaps = 16/162 (9%)

Query  12   VHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGR---  68
            + G  + +N+   +    G F+E FA GAF +S+ +    + +L  HDA TR P+GR   
Sbjct  4    ISGYAIQWNQPAVI---AGLFEERFARGAFNQSLLDH-PDVAILWGHDA-TR-PLGRVAN  57

Query  69   -AVELREEPHGLFGAFEIAD-TPDGDEALANVKAGVVDSFSVGFRPIRDRRE--GDVLVR  124
              + LR +  GL+ +F   + +P G EALA V AG V+  SVGF    +  +  GD+  R
Sbjct  58   KTLTLRSDNIGLWYSFSPNEQSPLGQEALATVAAGTVNEVSVGFASQIEEWDDSGDLPRR  117

Query  125  V--EAALLEVSLTGVPAYSGAQIAG-VRAESLTVVSRSTAEA  163
            +  +A L E+SL    AY  A  A  VRAE+     R  AEA
Sbjct  118  LITQARLFEISLVLWGAYGKATSAELVRAENKAAAIRRKAEA  159


>gi|168697980|ref|ZP_02730257.1| pro-head protease [Gemmata obscuriglobus UQM 2246]
Length=210

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 41/136 (31%), Positives = 69/136 (51%), Gaps = 6/136 (4%)

Query  32   FQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIADTPDG  91
            + ++  PGAF +SIA+R  K  +L  H++    P+G    + E+  GL+    I DT  G
Sbjct  35   YSDIVMPGAFTKSIAKR--KPVMLWQHNSDQ--PIGVWDVMEEQKKGLYVKGRILDTALG  90

Query  92   DEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIAGVR  149
             +A   VKAG +   S+G+   +   + +  +R   E  L E+S+   PA   AQI  V+
Sbjct  91   GDAYKLVKAGAISGLSIGYSAKKWETDSEKGIRKLTEVELYEISMVTFPANEKAQITRVK  150

Query  150  AESLTVVSRSTAEAWL  165
            ++  T++     E +L
Sbjct  151  SDDGTLIDERAFEEFL  166


>gi|326575947|gb|EGE25870.1| prohead protease [Moraxella catarrhalis CO72]
Length=216

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 50/153 (33%), Positives = 75/153 (50%), Gaps = 17/153 (11%)

Query  23   TTVRDFDGEFQEMFAPGAFRRSIAE---RGHKLKLLVSHDARTRYPVGRAVELREEPHGL  79
              V D    + +    GAF +S+A+   RG    +L  HD R + P+G    L+E+ HGL
Sbjct  23   CNVFDVVDSYGDSVQKGAFVKSLAKFEVRGKMPPILWQHD-RAQ-PIGVWTALKEDEHGL  80

Query  80   FG--AFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREG--DVLVRVEAALLEVSLT  135
            +G     I D P   EA A +KAGV+D  S+G+R  +   +   +VL+  E  L E+S+ 
Sbjct  81   YGEGKLLIDDVPKAREAHALIKAGVIDGLSIGYRVEQADYDNTKEVLLLKELDLFEISVV  140

Query  136  GVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLL  168
              PA          A ++TVV  + A+  L  L
Sbjct  141  TFPAND--------ASTVTVVKSALAQGQLPTL  165


>gi|298290715|ref|YP_003692654.1| phage prohead protease HK97 family [Starkeya novella DSM 506]
 gi|296927226|gb|ADH88035.1| phage prohead protease, HK97 family [Starkeya novella DSM 506]
Length=187

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 49/127 (39%), Positives = 68/127 (54%), Gaps = 9/127 (7%)

Query  33   QEMFAPGAFRRSIAERGHK-LKLLVSHDARTRYPVGRAVELREEPHGLF--GAFEIADTP  89
            +++  PGAF RS+AERG   +++L  HD     P+G  + LRE+  GL   G   + D  
Sbjct  42   RDLILPGAFARSLAERGTSGVRMLFQHDPAE--PIGTWLSLREDAVGLHVRGRLTL-DVA  98

Query  90   DGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVR--VEAALLEVSLTGVPAYSGAQIAG  147
               E LA ++AG +D  S+GFR +  R +    VR      L EVS+   P    A+IAG
Sbjct  99   RSREVLALMRAGAIDGLSIGFRTVEGRTDPRSRVRRLSRIDLWEVSIVTFPMQPDARIAG  158

Query  148  V-RAESL  153
            V RA SL
Sbjct  159  VKRAASL  165


>gi|212715329|ref|ZP_03323457.1| hypothetical protein BIFCAT_00223 [Bifidobacterium catenulatum 
DSM 16992]
 gi|212661786|gb|EEB22361.1| hypothetical protein BIFCAT_00223 [Bifidobacterium catenulatum 
DSM 16992]
Length=529

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 49/150 (33%), Positives = 71/150 (48%), Gaps = 15/150 (10%)

Query  7    GEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPV  66
            G+GRT+ G  VPY   + +  +DG   E F        + +     KL   H       +
Sbjct  18   GDGRTLEGVAVPY--GSVISTWDG--AETFDADC----VFDDTDTAKLCYQHGEL----I  65

Query  67   GRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDR--REGDVLVR  124
            GR ++   +  GL     I+DT  G + +A ++ G +DS SVGF PI D   ++G V  R
Sbjct  66   GRILDAHPQEDGLHITAHISDTQRGRDVVALLRDGALDSLSVGFMPIDDEVDKQG-VTHR  124

Query  125  VEAALLEVSLTGVPAYSGAQIAGVRAESLT  154
                LLEVS+   PAY  A+I   R+   T
Sbjct  125  RRVRLLEVSVVSWPAYEAAKITSQRSSETT  154


>gi|167855084|ref|ZP_02477857.1| putative head maturation protease of prophage CP-933C [Haemophilus 
parasuis 29755]
 gi|72384739|gb|AAZ67661.1| phage phi-C31 gp35-like protein [Haemophilus parasuis 29755]
 gi|167853822|gb|EDS25063.1| putative head maturation protease of prophage CP-933C [Haemophilus 
parasuis 29755]
Length=188

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 51/177 (29%), Positives = 86/177 (49%), Gaps = 20/177 (11%)

Query  7    GEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPV  66
            GE + + G +V +N+ + V    GE+ E FAP AF  S+ + G  ++ L  HD  T+  +
Sbjct  15   GENKKLVGYVVQWNKESEV--LWGEYVERFAPNAFSDSL-KSGKDVRALFEHD-HTKL-L  69

Query  67   GR----AVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRR----E  118
            GR     + L E+  GL       DT  G + L +V+ G ++  S GFR +++      E
Sbjct  70   GRTSSGTLTLEEDATGLRFELIPPDTQLGRDLLVSVERGDINGMSFGFRTVKNEWDFSVE  129

Query  119  GDVLVRVEAALLEVSLTGVPAYSGAQI-------AGVRAESLTVVSRSTAEAWLSLL  168
             ++    +A L+EV++T +PAY  + +       A  + E  T         WL++L
Sbjct  130  PNLRTVQQAELVEVTVTSIPAYPDSSLEILKRSQAVAKGEKFTHWQDENRRKWLAVL  186



Lambda     K      H
   0.319    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 133465142006


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40