BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1578c
Length=156
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608716|ref|NP_216094.1| phiRv1 phage protein [Mycobacterium... 310 6e-83
gi|308372555|ref|ZP_07429053.2| phage terminase, small subunit, ... 310 6e-83
gi|289569618|ref|ZP_06449845.1| LOW QUALITY PROTEIN: phiRv1 phag... 260 6e-68
gi|289569614|ref|ZP_06449841.1| predicted protein [Mycobacterium... 194 4e-48
gi|290960847|ref|YP_003492029.1| phage terminase small subunit [... 149 2e-34
gi|54022002|ref|YP_116244.1| hypothetical protein nfa380 [Nocard... 146 9e-34
gi|295839098|ref|ZP_06826031.1| P27 family phage terminase, smal... 141 4e-32
gi|308232202|ref|ZP_07415271.2| phiRv2 phage protein [Mycobacter... 108 2e-22
gi|15842192|ref|NP_337229.1| hypothetical protein MT2729 [Mycoba... 108 3e-22
gi|308374650|ref|ZP_07436858.2| phiRv2 phage protein [Mycobacter... 108 3e-22
gi|15609789|ref|NP_217168.1| phiRv2 prophage protein [Mycobacter... 108 3e-22
gi|93709|pir||S21428 hypothetical protein (cos site) - actinopha... 99.4 2e-19
gi|296169764|ref|ZP_06851379.1| terminase [Mycobacterium parascr... 95.1 3e-18
gi|120601919|ref|YP_966319.1| P27 family phage terminase small s... 93.6 9e-18
gi|331085739|ref|ZP_08334822.1| hypothetical protein HMPREF0987_... 92.4 2e-17
gi|336435244|ref|ZP_08614961.1| hypothetical protein HMPREF0988_... 92.0 2e-17
gi|332800335|ref|YP_004461834.1| phage terminase, small subunit ... 91.7 4e-17
gi|332522792|ref|ZP_08399044.1| phage terminase, small subunit, ... 90.1 1e-16
gi|342902284|ref|ZP_08724097.1| prophage LambdaSa04, P27 family ... 89.7 1e-16
gi|125974227|ref|YP_001038137.1| P27 family phage terminase smal... 89.4 2e-16
gi|341576782|gb|EGS27190.1| prophage LambdaSa04, P27 family term... 89.0 2e-16
gi|339452903|gb|EGP65522.1| phage terminase, small subunit, P27 ... 88.2 4e-16
gi|288916276|ref|ZP_06410655.1| phage terminase, small subunit, ... 88.2 4e-16
gi|343525830|ref|ZP_08762783.1| phage terminase, small subunit, ... 87.8 5e-16
gi|325690439|gb|EGD32442.1| terminase [Streptococcus sanguinis S... 87.8 5e-16
gi|325687747|gb|EGD29768.1| phage terminase small subunit [Strep... 87.4 6e-16
gi|77412063|ref|ZP_00788389.1| phage terminase, small subunit, p... 87.0 8e-16
gi|327461142|gb|EGF07475.1| terminase [Streptococcus sanguinis S... 86.7 9e-16
gi|300853552|ref|YP_003778536.1| putative phage terminasesmall s... 86.7 9e-16
gi|319757812|gb|ADV69754.1| phage terminase, small subunit, puta... 86.7 9e-16
gi|341577218|gb|EGS27626.1| prophage LambdaSa04, P27 family term... 86.3 1e-15
gi|297583102|ref|YP_003698882.1| P27 family phage terminase smal... 86.3 1e-15
gi|302873678|ref|YP_003842311.1| phage terminase, small subunit,... 86.3 1e-15
gi|302343972|ref|YP_003808501.1| phage terminase, small subunit,... 85.9 2e-15
gi|331090233|ref|ZP_08339121.1| hypothetical protein HMPREF1025_... 85.1 3e-15
gi|50914488|ref|YP_060460.1| Phage terminase small subunit [Stre... 85.1 3e-15
gi|332983418|ref|YP_004464859.1| phage terminase, small subunit ... 84.3 6e-15
gi|197303510|ref|ZP_03168549.1| hypothetical protein RUMLAC_0223... 84.0 7e-15
gi|342903080|ref|ZP_08724893.1| prophage LambdaSa04, P27 family ... 83.2 1e-14
gi|254299078|ref|ZP_04966528.1| phage terminase, small subunit, ... 81.6 3e-14
gi|154504819|ref|ZP_02041557.1| hypothetical protein RUMGNA_0232... 78.6 3e-13
gi|262113736|emb|CAR95403.1| hypothetical protein [Streptococcus... 78.6 3e-13
gi|227498315|ref|ZP_03928465.1| phage terminase small subunit [A... 78.6 3e-13
gi|218133439|ref|ZP_03462243.1| hypothetical protein BACPEC_0130... 77.4 6e-13
gi|296051581|ref|YP_003632255.1| phage terminase, small subunit,... 76.6 1e-12
gi|76788377|ref|YP_329368.1| prophage LambdaSa04, P27 family ter... 76.3 1e-12
gi|302344008|ref|YP_003808537.1| phage terminase, small subunit,... 75.1 3e-12
gi|46579915|ref|YP_010723.1| terminase small subunit [Desulfovib... 73.9 7e-12
gi|186472256|ref|YP_001859598.1| P27 family phage terminase smal... 73.2 1e-11
gi|326575950|gb|EGE25873.1| P27 family phage terminase small sub... 73.2 1e-11
>gi|15608716|ref|NP_216094.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|15843070|ref|NP_338107.1| hypothetical protein MT3573.7 [Mycobacterium tuberculosis CDC1551]
gi|31792764|ref|NP_855257.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
33 more sequence titles
gi|148661373|ref|YP_001282896.1| hypothetical protein MRA_1589 [Mycobacterium tuberculosis H37Ra]
gi|167966954|ref|ZP_02549231.1| hypothetical protein MtubH3_02423 [Mycobacterium tuberculosis
H37Ra]
gi|254366076|ref|ZP_04982121.1| hypothetical protein TBHG_03408 [Mycobacterium tuberculosis str.
Haarlem]
gi|289443031|ref|ZP_06432775.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289447187|ref|ZP_06436931.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289751276|ref|ZP_06510654.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289753665|ref|ZP_06513043.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|306775764|ref|ZP_07414101.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu001]
gi|306782542|ref|ZP_07420879.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu002]
gi|306786362|ref|ZP_07424684.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu003]
gi|306799448|ref|ZP_07437750.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu006]
gi|306805295|ref|ZP_07441963.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu008]
gi|306969588|ref|ZP_07482249.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu009]
gi|307079591|ref|ZP_07488761.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu011]
gi|307084158|ref|ZP_07493271.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu012]
gi|2117259|emb|CAB09059.1| Probable phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|13883415|gb|AAK47921.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31618354|emb|CAD96272.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|134151589|gb|EBA43634.1| hypothetical protein TBHG_03408 [Mycobacterium tuberculosis str.
Haarlem]
gi|148505525|gb|ABQ73334.1| hypothetical protein MRA_1589 [Mycobacterium tuberculosis H37Ra]
gi|289415950|gb|EFD13190.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289420145|gb|EFD17346.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289691863|gb|EFD59292.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289694252|gb|EFD61681.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|308215854|gb|EFO75253.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu001]
gi|308324802|gb|EFP13653.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu002]
gi|308329000|gb|EFP17851.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu003]
gi|308340349|gb|EFP29200.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu006]
gi|308348165|gb|EFP37016.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu008]
gi|308352850|gb|EFP41701.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu009]
gi|308362559|gb|EFP51410.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu011]
gi|308366213|gb|EFP55064.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu012]
gi|323717859|gb|EGB27049.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=156
Score = 310 bits (793), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/156 (100%), Positives = 156/156 (100%), Gaps = 0/156 (0%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE
Sbjct 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
Query 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 120
RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH
Sbjct 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 120
Query 121 LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR 156
LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR
Sbjct 121 LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR 156
>gi|308372555|ref|ZP_07429053.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu004]
gi|308373750|ref|ZP_07433562.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu005]
gi|308376128|ref|ZP_07446148.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu007]
gi|308378977|ref|ZP_07484533.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu010]
gi|308332839|gb|EFP21690.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu004]
gi|308336471|gb|EFP25322.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu005]
gi|308344234|gb|EFP33085.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu007]
gi|308358727|gb|EFP47578.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis
SUMu010]
Length=160
Score = 310 bits (793), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/156 (100%), Positives = 156/156 (100%), Gaps = 0/156 (0%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE
Sbjct 5 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 64
Query 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 120
RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH
Sbjct 65 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 124
Query 121 LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR 156
LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR
Sbjct 125 LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR 160
>gi|289569618|ref|ZP_06449845.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis
T17]
gi|289543372|gb|EFD47020.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis
T17]
Length=132
Score = 260 bits (664), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/132 (99%), Positives = 131/132 (99%), Gaps = 0/132 (0%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE
Sbjct 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
Query 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 120
RLDLLKPE RALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH
Sbjct 61 RLDLLKPEVRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 120
Query 121 LLRLASEFGLTP 132
LLRLASEFGLTP
Sbjct 121 LLRLASEFGLTP 132
>gi|289569614|ref|ZP_06449841.1| predicted protein [Mycobacterium tuberculosis T17]
gi|289543368|gb|EFD47016.1| predicted protein [Mycobacterium tuberculosis T17]
Length=98
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/98 (98%), Positives = 97/98 (99%), Gaps = 0/98 (0%)
Query 59 LERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETAR 118
+ERLDLLKPE RALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETAR
Sbjct 1 MERLDLLKPEVRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETAR 60
Query 119 MHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR 156
MHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR
Sbjct 61 MHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR 98
>gi|290960847|ref|YP_003492029.1| phage terminase small subunit [Streptomyces scabiei 87.22]
gi|260650373|emb|CBG73489.1| putative phage terminase small subunit [Streptomyces scabiei
87.22]
Length=159
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/163 (53%), Positives = 101/163 (62%), Gaps = 14/163 (8%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
M R +PA LKL+ GR+ GRDSGGRKV P F R P+ P WL EA AEWRRVAP L
Sbjct 1 MGRTAQPAALKLLTGRAEGRDSGGRKVNPGPAFRRIPPNPPTWLSPEAKAEWRRVAPGLS 60
Query 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHR----------NPA 110
RLDLLK EDRA+LSAYCETWSV+V A + V +GLT+ V +R NP+
Sbjct 61 RLDLLKEEDRAMLSAYCETWSVFVRATRDVTKQGLTVMQ----VTYRGEARIEKPVANPS 116
Query 111 VTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFA 153
V VA A L A++FGL+PA EQ L+ D + NPFA
Sbjct 117 VAVARNAGRELRGFAAQFGLSPATEQALSRGADDGNEDDNPFA 159
>gi|54022002|ref|YP_116244.1| hypothetical protein nfa380 [Nocardia farcinica IFM 10152]
gi|54013510|dbj|BAD54880.1| putative phage terminase small subunit [Nocardia farcinica IFM
10152]
Length=162
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/162 (54%), Positives = 100/162 (62%), Gaps = 9/162 (5%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
M R PA L+L+ GRS GRDSGGR V + P+F R P P WL EA AEW+RV P L
Sbjct 1 MGRTAAPAALRLIGGRSEGRDSGGRPVEQPPEFRRIPPKPPTWLSREAKAEWKRVVPGLS 60
Query 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLT---ITSPKSGVVHR----NPAVTV 113
RL+LLK EDRA L+ YCETW+ YVAA+ VR GLT +T K G R NPA+ V
Sbjct 61 RLELLKEEDRASLAVYCETWATYVAALADVRKNGLTCENVTIYKDGTESRRTVKNPALVV 120
Query 114 AETARMHLLRLASEFGLTPAAEQRLAVAPGDDG--DGLNPFA 153
AETA L +A EFGLTPAAE +LA G D NPF
Sbjct 121 AETAAAQLRGMAQEFGLTPAAEGKLAHLSAGRGSDDANNPFG 162
>gi|295839098|ref|ZP_06826031.1| P27 family phage terminase, small subunit [Streptomyces sp. SPB74]
gi|197695547|gb|EDY42480.1| P27 family phage terminase, small subunit [Streptomyces sp. SPB74]
Length=152
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 100/152 (66%), Gaps = 2/152 (1%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLE 60
M R +PA L+L++GR+PG+DS GR+V P F R +P+AP+WL EA AEW RV P L
Sbjct 2 MGRTAQPAALRLIKGRAPGKDSAGREVKAGPAFKRLSPEAPEWLSEEAAAEWARVVPGLA 61
Query 61 RLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMH 120
RLDLLKPEDRA L+AYCE W+ + A + V+ EGLTI + + + H PAV +A A
Sbjct 62 RLDLLKPEDRAALAAYCEAWASFRVATEAVQREGLTIEAKQGLLPH--PAVGMARAAGRE 119
Query 121 LLRLASEFGLTPAAEQRLAVAPGDDGDGLNPF 152
+ A+ FGLTP+ EQ LA ++ D NPF
Sbjct 120 VRAWAAHFGLTPSTEQALARGSENEPDPDNPF 151
>gi|308232202|ref|ZP_07415271.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu001]
gi|308369815|ref|ZP_07419172.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu002]
gi|308372358|ref|ZP_07428379.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu004]
13 more sequence titles
Length=166
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/156 (46%), Positives = 88/156 (57%), Gaps = 4/156 (2%)
Query 5 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 64
P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L
Sbjct 11 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 70
Query 65 LKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 124
LK D +L+++C W + AV R +G T+ +S V +PAV A A +L L
Sbjct 71 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 130
Query 125 ASEFGLTPA---AEQRLAVAPGD-DGDGLNPFAPDR 156
A E G TP+ + A GD D D NPFAPDR
Sbjct 131 ARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 166
>gi|15842192|ref|NP_337229.1| hypothetical protein MT2729 [Mycobacterium tuberculosis CDC1551]
gi|148823843|ref|YP_001288597.1| phiRv2 prophage protein [Mycobacterium tuberculosis F11]
gi|254365317|ref|ZP_04981362.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis
str. Haarlem]
9 more sequence titles
Length=163
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/156 (46%), Positives = 88/156 (57%), Gaps = 4/156 (2%)
Query 5 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 64
P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L
Sbjct 8 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 67
Query 65 LKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 124
LK D +L+++C W + AV R +G T+ +S V +PAV A A +L L
Sbjct 68 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 127
Query 125 ASEFGLTPA---AEQRLAVAPGD-DGDGLNPFAPDR 156
A E G TP+ + A GD D D NPFAPDR
Sbjct 128 ARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 163
>gi|308374650|ref|ZP_07436858.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu006]
gi|308375527|ref|ZP_07444213.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu007]
gi|308341199|gb|EFP30050.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu006]
gi|308346039|gb|EFP34890.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu007]
gi|323718764|gb|EGB27923.1| phiRv2 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=167
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/156 (46%), Positives = 88/156 (57%), Gaps = 4/156 (2%)
Query 5 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 64
P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L
Sbjct 12 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 71
Query 65 LKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 124
LK D +L+++C W + AV R +G T+ +S V +PAV A A +L L
Sbjct 72 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 131
Query 125 ASEFGLTPA---AEQRLAVAPGD-DGDGLNPFAPDR 156
A E G TP+ + A GD D D NPFAPDR
Sbjct 132 ARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 167
>gi|15609789|ref|NP_217168.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
gi|148662494|ref|YP_001284017.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
gi|253798266|ref|YP_003031267.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN 1435]
26 more sequence titles
Length=208
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/156 (46%), Positives = 88/156 (57%), Gaps = 4/156 (2%)
Query 5 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 64
P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L
Sbjct 53 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 112
Query 65 LKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 124
LK D +L+++C W + AV R +G T+ +S V +PAV A A +L L
Sbjct 113 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 172
Query 125 ASEFGLTPA---AEQRLAVAPGD-DGDGLNPFAPDR 156
A E G TP+ + A GD D D NPFAPDR
Sbjct 173 ARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208
>gi|93709|pir||S21428 hypothetical protein (cos site) - actinophage RP3
gi|14765|emb|CAA46524.1| unnamed protein product [Actinophage RP3]
Length=210
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/94 (53%), Positives = 61/94 (65%), Gaps = 0/94 (0%)
Query 13 VEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRAL 72
+ GRSPGRDSGGRKV P F R P P WL EA AEW+RV P L RLDL+K +DR
Sbjct 106 ITGRSPGRDSGGRKVEPGPAFKRVPPKPPTWLSREAAAEWKRVLPELSRLDLVKEQDRTA 165
Query 73 LSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVH 106
L AY E W+ +V+A + V+ EGL I + + + H
Sbjct 166 LVAYWEAWATFVSATRVVQEEGLVIEARQGKLAH 199
>gi|296169764|ref|ZP_06851379.1| terminase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895558|gb|EFG75257.1| terminase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=124
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/115 (47%), Positives = 71/115 (62%), Gaps = 8/115 (6%)
Query 47 EALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTI---TSPKSG 103
EA AEW+R+ P L RLDL+KPEDRA L+AYCE WS +V A + + A G + + K G
Sbjct 4 EAKAEWKRIVPGLTRLDLVKPEDRAALTAYCELWSRWVTATRDIVANGQVVRNKSVKKDG 63
Query 104 V----VHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDDGDG-LNPFA 153
+NP+V VAE A L + A++FGLTPA E+ ++ D G+ NPFA
Sbjct 64 TESVWYTKNPSVAVAEQAETRLRQFANDFGLTPAGERNVSKRDDDRGEHEANPFA 118
>gi|120601919|ref|YP_966319.1| P27 family phage terminase small subunit [Desulfovibrio vulgaris
DP4]
gi|120562148|gb|ABM27892.1| phage terminase, small subunit, putative, P27 family [Desulfovibrio
vulgaris DP4]
Length=152
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R P P++LK+++G D R P P PDAP +L A A EW R AP L R+
Sbjct 4 RKPLPSKLKVLKGT----DQPCRMNPHEPSLTALVPDAPAFLGAIARDEWNRKAPMLARM 59
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A L+AYC+ + +V A ++R GL I + SG V +NP V VA A +
Sbjct 60 GVLTEGDDAALAAYCQAYERFVEAEGKIRQSGLLIKT-SSGNVIQNPLVGVANRAMELMH 118
Query 123 RLASEFGLTPAAEQRLAVAP 142
R +EFGLTP++ R+A P
Sbjct 119 RFMTEFGLTPSSRTRIAAHP 138
>gi|331085739|ref|ZP_08334822.1| hypothetical protein HMPREF0987_01125 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406662|gb|EGG86167.1| hypothetical protein HMPREF0987_01125 [Lachnospiraceae bacterium
9_1_43BFAA]
Length=159
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/143 (35%), Positives = 81/143 (57%), Gaps = 5/143 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP +K++EG +PG+ S PK +++AP P WL+ EA EW+R+A +E+L
Sbjct 6 RKPKPTAVKVLEG-NPGKRSLN---TNEPKPVKKAPRCPGWLEDEAKKEWKRMAKQMEQL 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A + YC+ ++ + A + + G + +P SG + P V++A+T +
Sbjct 62 GILTEIDMAAFAGYCQAYARWKEAEEFITQHGTIVKTP-SGYWQQVPQVSIAQTYLKIMN 120
Query 123 RLASEFGLTPAAEQRLAVAPGDD 145
+ +FGLTP+A R+ GDD
Sbjct 121 KFCEQFGLTPSARSRIITDNGDD 143
>gi|336435244|ref|ZP_08614961.1| hypothetical protein HMPREF0988_00546 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001635|gb|EGN31771.1| hypothetical protein HMPREF0988_00546 [Lachnospiraceae bacterium
1_4_56FAA]
Length=159
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/143 (35%), Positives = 81/143 (57%), Gaps = 5/143 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP +K++EG +PG+ S PK +++AP P WL+ EA EW+R+A +E+L
Sbjct 6 RKPKPTAVKVLEG-NPGKRSLN---TNEPKPVKKAPRCPAWLEDEAKKEWKRMAKQMEQL 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A + YC+ ++ + A + + G + +P SG + P V++A+T +
Sbjct 62 GILTEIDMAAFAGYCQAYARWKEAEEFITQHGTIVKTP-SGYWQQVPQVSIAQTYLKIMN 120
Query 123 RLASEFGLTPAAEQRLAVAPGDD 145
+ +FGLTP+A R+ GDD
Sbjct 121 KFCEQFGLTPSARSRIVTDNGDD 143
>gi|332800335|ref|YP_004461834.1| phage terminase, small subunit P27 family [Tepidanaerobacter
sp. Re1]
gi|332698070|gb|AEE92527.1| phage terminase, small subunit, , P27 family [Tepidanaerobacter
sp. Re1]
Length=157
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/147 (38%), Positives = 80/147 (55%), Gaps = 9/147 (6%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP LK++EG +PG+ K P+ K +AP P WL+ EA EW+R+A TLE +
Sbjct 6 RKPKPTALKVLEG-NPGKRPLNDKEPQPEK---KAPRCPSWLEPEAKKEWKRMAKTLEAM 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L DR YC+ ++ + A + + G +P SG + + P V++A+T +
Sbjct 62 GVLTQVDRTAFEGYCQAYARWKEAEEFLSKHGTIFKTP-SGYIQQVPQVSIAQTYLKVMK 120
Query 123 RLASEFGLTPAAEQRLAV----APGDD 145
SEFGLTPAA R+ V P DD
Sbjct 121 DFCSEFGLTPAARTRIQVNTIDTPTDD 147
>gi|332522792|ref|ZP_08399044.1| phage terminase, small subunit, P27 family [Streptococcus porcinus
str. Jelinkova 176]
gi|332314056|gb|EGJ27041.1| phage terminase, small subunit, P27 family [Streptococcus porcinus
str. Jelinkova 176]
Length=165
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/149 (34%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ L
Sbjct 14 RKPKPTNLKILEG-NPGK----RPLPNNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKIL 66
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ +L D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 67 EQMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 125
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA D G G
Sbjct 126 IMLKFCEQFGLTPSARNRLATMDADVGTG 154
>gi|342902284|ref|ZP_08724097.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus
urinalis 2285-97]
Length=157
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/149 (34%), Positives = 85/149 (58%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ L
Sbjct 6 RKPKPTNLKILEG-NPGK----RPLPSNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKIL 58
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ LL D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 59 EQMGLLTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 117
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G+G
Sbjct 118 IMLKFCEQFGLTPSARNRLATMDAEVGNG 146
>gi|125974227|ref|YP_001038137.1| P27 family phage terminase small subunit [Clostridium thermocellum
ATCC 27405]
gi|125714452|gb|ABN52944.1| phage terminase, small subunit, putative, P27 family [Clostridium
thermocellum ATCC 27405]
Length=160
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/144 (37%), Positives = 81/144 (57%), Gaps = 7/144 (4%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPE-SPKFIRQAPDAPDWLDAEALAEWRRVAPTLER 61
R PKP LK++EG +PG+ R + E PK ++AP P WLDAEA EWRR++ LE
Sbjct 6 RKPKPTALKILEG-NPGK----RPLNEDEPKPEKKAPKCPGWLDAEAKKEWRRMSKQLEA 60
Query 62 LDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHL 121
+ +L D A + YC+ ++ + A + + G + +P SG + P V++A+T +
Sbjct 61 MGILTEIDMAAFAGYCQAYARWKEAEEFITKHGTIVKTP-SGYWQQVPQVSIAQTYLKIM 119
Query 122 LRLASEFGLTPAAEQRLAVAPGDD 145
R +FGLTP+A R+ +D
Sbjct 120 NRFCEQFGLTPSARSRIVTDNIND 143
>gi|341576782|gb|EGS27190.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus
agalactiae FSL S3-026]
Length=157
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 85/149 (58%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ L
Sbjct 6 RKPKPTNLKILEG-NPGK----RPLPSNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKIL 58
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ LL D + YC+ ++ + A + + G + +P +G + + P V++++T
Sbjct 59 EQMGLLTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIVKTP-NGYLQQVPQVSISQTNLK 117
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G+G
Sbjct 118 IMLKFCEQFGLTPSARNRLATMDAEVGNG 146
>gi|339452903|gb|EGP65522.1| phage terminase, small subunit, P27 family [Streptococcus mitis
SK1073]
gi|343391873|gb|EGV04446.1| phage terminase, small subunit, P27 family [Streptococcus infantis
SK970]
Length=157
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/147 (33%), Positives = 84/147 (58%), Gaps = 7/147 (4%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESP-KFIRQAPDAPDWLDAEALAEWRRVAPTLER 61
R PKP LK++EG +PG+ R +P + K ++AP P WL+ +A EW+R+ LE+
Sbjct 6 RKPKPTNLKVLEG-NPGK----RPLPTNEVKPQKKAPRCPQWLEEDAKREWKRMGKILEQ 60
Query 62 LDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHL 121
+ LL D + YC+ ++ + A + + G + +P +G + + P V++++T +
Sbjct 61 MGLLTEMDMTAFAGYCQAYARWKEAEEFLSKHGSILKTP-NGYLQQVPQVSISQTNLKIM 119
Query 122 LRLASEFGLTPAAEQRLAVAPGDDGDG 148
L+ +FGLTP+A RLA + G+G
Sbjct 120 LKFCEQFGLTPSARNRLATMDSEVGNG 146
>gi|288916276|ref|ZP_06410655.1| phage terminase, small subunit, , P27 family [Frankia sp. EUN1f]
gi|288352255|gb|EFC86453.1| phage terminase, small subunit, , P27 family [Frankia sp. EUN1f]
Length=153
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/154 (41%), Positives = 82/154 (54%), Gaps = 10/154 (6%)
Query 1 MPRPPKPARLKLVEGR---SPGR-DSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVA 56
MP+P KP LKL+ G +PGR + G VP +P P+ P LDA A W
Sbjct 1 MPQPTKPTALKLLHGVDKVNPGRINRGEAAVPLAPN-----PEPPLDLDAVARDVWDHYL 55
Query 57 PTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAET 116
P L LL D +A C++WS Y AAV+ VR EG +T G V RNPA VA+
Sbjct 56 PILRTARLLTEADVLAFAALCQSWSSYRAAVEAVRREG-PLTVGGRGQVVRNPAALVAKD 114
Query 117 ARMHLLRLASEFGLTPAAEQRLAVAPGDDGDGLN 150
+ +RLA EFGLTP++ R+++ GD L+
Sbjct 115 SLAEFMRLAVEFGLTPSSRARISLPEAGSGDALD 148
>gi|343525830|ref|ZP_08762783.1| phage terminase, small subunit, P27 family [Streptococcus constellatus
subsp. pharyngis SK1060]
gi|343395240|gb|EGV07781.1| phage terminase, small subunit, P27 family [Streptococcus constellatus
subsp. pharyngis SK1060]
Length=165
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ L
Sbjct 14 RKPKPTNLKILEG-NPGK----RPLPTNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKIL 66
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ +L D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 67 EQMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 125
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 126 IMLKFCEQFGLTPSARNRLATMDAEVGTG 154
>gi|325690439|gb|EGD32442.1| terminase [Streptococcus sanguinis SK115]
Length=165
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/149 (35%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P++ PK ++AP P WL+ +A EW+R+ L
Sbjct 14 RKPKPTSLKILEG-NPGK----RPLPKNEIQPK--KKAPRCPSWLEEDAKKEWKRIGKIL 66
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E L LL D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 67 EGLGLLTDMDMMAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 125
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 126 IMLKFCEQFGLTPSARTRLASMDTEVGSG 154
>gi|325687747|gb|EGD29768.1| phage terminase small subunit [Streptococcus sanguinis SK72]
Length=165
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/149 (35%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P++ PK ++AP P WL+ +A EW+R+ L
Sbjct 14 RKPKPTSLKILEG-NPGK----RPLPKNEIQPK--KKAPRCPSWLEEDAKKEWKRMGKIL 66
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E L LL D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 67 EGLGLLTDMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 125
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 126 IMLKFCEQFGLTPSARTRLASMDSEVGSG 154
>gi|77412063|ref|ZP_00788389.1| phage terminase, small subunit, putative [Streptococcus agalactiae
CJB111]
gi|77161868|gb|EAO72853.1| phage terminase, small subunit, putative [Streptococcus agalactiae
CJB111]
Length=157
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ L
Sbjct 6 RKPKPTNLKILEG-NPGK----RPLPTNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKIL 58
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ +L D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 59 EQIGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 117
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 118 IMLKFCEQFGLTPSARNRLATMDAEVGTG 146
>gi|327461142|gb|EGF07475.1| terminase [Streptococcus sanguinis SK1057]
Length=165
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/149 (35%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P++ PK ++AP P WL+ +A EW+R+ L
Sbjct 14 RKPKPTSLKILEG-NPGK----RPLPKNEIQPK--KKAPRCPSWLEEDAKKEWKRMGKVL 66
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E L LL D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 67 EGLGLLTDMDMMAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 125
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 126 IMLKFCEQFGLTPSARTRLASMDTEVGSG 154
>gi|300853552|ref|YP_003778536.1| putative phage terminasesmall subunit [Clostridium ljungdahlii
DSM 13528]
gi|300433667|gb|ADK13434.1| predicted phage terminase, small subunit [Clostridium ljungdahlii
DSM 13528]
Length=156
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/139 (36%), Positives = 77/139 (56%), Gaps = 5/139 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP LK++EG +PG+ P+ K +AP P WL+ EA EWRR+ TLE++
Sbjct 6 RKPKPTALKVLEG-NPGKRPLNINEPKPEK---KAPKCPSWLEPEAKKEWRRMTKTLEKI 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A + YC+ ++ + A + + G +P SG + + P V++A+T +
Sbjct 62 GVLTKVDAAAFAGYCQAYARWKEAEEFLTKHGTIFKTP-SGYIQQVPQVSIAQTYLKIMK 120
Query 123 RLASEFGLTPAAEQRLAVA 141
SEFGLTP++ R+ V
Sbjct 121 DFCSEFGLTPSSRTRIRVG 139
>gi|319757812|gb|ADV69754.1| phage terminase, small subunit, putative [Streptococcus suis
JS14]
gi|333770613|gb|EGL47629.1| phage terminase, small subunit, P27 family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
Length=157
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/149 (33%), Positives = 84/149 (57%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP +K++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ L
Sbjct 6 RKPKPTNMKILEG-NPGK----RPLPTNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKIL 58
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ +L D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 59 EQMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 117
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 118 IMLKFCEQFGLTPSARNRLATMDSEVGTG 146
>gi|341577218|gb|EGS27626.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus
agalactiae FSL S3-026]
Length=157
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/149 (33%), Positives = 83/149 (56%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK ++ P P WL+ +A EW+R+ L
Sbjct 6 RKPKPTNLKILEG-NPGK----RPLPTNEVKPK--QKGPRCPQWLEDDAKKEWKRMGKIL 58
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ +L D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 59 EQMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 117
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +FGLTP+A RLA + G G
Sbjct 118 IMLKFCEQFGLTPSARNRLATMDAEVGTG 146
>gi|297583102|ref|YP_003698882.1| P27 family phage terminase small subunit [Bacillus selenitireducens
MLS10]
gi|297585277|ref|YP_003701057.1| P27 family phage terminase small subunit [Bacillus selenitireducens
MLS10]
gi|297141559|gb|ADH98316.1| phage terminase, small subunit, , P27 family [Bacillus selenitireducens
MLS10]
gi|297143734|gb|ADI00492.1| phage terminase, small subunit, , P27 family [Bacillus selenitireducens
MLS10]
Length=160
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 73/137 (54%), Gaps = 5/137 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP LK +EG RD P PK ++AP P WL+ EA EWRR+ LE+L
Sbjct 6 RKPKPTALKALEGNPGKRDLN----PHEPKPEKKAPRCPSWLEPEAKKEWRRMVKQLEQL 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A + YC+ ++ + A + + G + +P SG + P V++A++ +
Sbjct 62 GILTEVDMAAFAGYCQAYARWKEAEEFITKHGTIVKTP-SGYWQQVPQVSIAQSYLKIMN 120
Query 123 RLASEFGLTPAAEQRLA 139
R +FGLTP++ R+
Sbjct 121 RFCEQFGLTPSSRSRIT 137
>gi|302873678|ref|YP_003842311.1| phage terminase, small subunit, , P27 family [Clostridium cellulovorans
743B]
gi|307686598|ref|ZP_07629044.1| phage terminase, small subunit, , P27 family protein [Clostridium
cellulovorans 743B]
gi|302576535|gb|ADL50547.1| phage terminase, small subunit, , P27 family [Clostridium cellulovorans
743B]
Length=156
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/136 (36%), Positives = 77/136 (57%), Gaps = 5/136 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP LK++EG +PG+ S P+ K +A P WL+ EA EWRR++ TLE++
Sbjct 6 RKPKPTALKVLEG-NPGKRSLNLNEPKPEK---KASKCPSWLEPEAKKEWRRMSKTLEQI 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A + YC+ ++ + A + + G +P SG + + P V++A+T +
Sbjct 62 GVLTQVDTAAFAGYCQAYARWKEAEEFLSKHGTIFKTP-SGYIQQVPQVSIAQTYLKIMK 120
Query 123 RLASEFGLTPAAEQRL 138
SEFGLTP++ R+
Sbjct 121 DFCSEFGLTPSSRSRI 136
>gi|302343972|ref|YP_003808501.1| phage terminase, small subunit, , P27 family [Desulfarculus baarsii
DSM 2075]
gi|301640585|gb|ADK85907.1| phage terminase, small subunit, , P27 family [Desulfarculus baarsii
DSM 2075]
Length=152
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/145 (36%), Positives = 76/145 (53%), Gaps = 5/145 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R P P +LK+++G + R P P+ P+ PD+L A EW R AP L R+
Sbjct 4 RKPLPTKLKMLKGTA----QKCRVNPNEPELAPALPEPPDFLGETAREEWLRKAPVLARM 59
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A L+AYC+ + +V A +++R GL I + V+ NP V VA A +
Sbjct 60 GVLTEGDDAALAAYCQAFERFVEAERKIRQSGLLIKTTGGNVIQ-NPLVGVANRAMEIMH 118
Query 123 RLASEFGLTPAAEQRLAVAPGDDGD 147
+ +EFGLTP++ R+A P D
Sbjct 119 KFLTEFGLTPSSRTRVAANPAGKED 143
>gi|331090233|ref|ZP_08339121.1| hypothetical protein HMPREF1025_02704 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402179|gb|EGG81751.1| hypothetical protein HMPREF1025_02704 [Lachnospiraceae bacterium
3_1_46FAA]
Length=159
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/145 (33%), Positives = 80/145 (56%), Gaps = 5/145 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP +K++EG +PG+ S P+ K +AP P WL+ EA EW+R++ LE+L
Sbjct 6 RKPKPTAVKVLEG-NPGKRSLNTAEPKPEK---KAPRCPSWLEDEAKKEWKRMSKQLEQL 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A + YC+ ++ + A + + G + +P SG + P V++A+T +
Sbjct 62 GILTEIDMAAFAGYCQAYARWKEAEEFITQHGTIVKTP-SGYWQQVPQVSIAQTYLKIMN 120
Query 123 RLASEFGLTPAAEQRLAVAPGDDGD 147
+ +FGLTP+A R+ +D +
Sbjct 121 KFCEQFGLTPSARSRIVADTAEDKE 145
>gi|50914488|ref|YP_060460.1| Phage terminase small subunit [Streptococcus pyogenes MGAS10394]
gi|40218568|gb|AAR83222.1| unknown [Streptococcus pyogenes]
gi|50261613|gb|AAT72381.1| phage terminase small subunit [Streptococcus pyogenes]
gi|50903562|gb|AAT87277.1| Phage Terminase Small Subunit [Streptococcus pyogenes MGAS10394]
Length=158
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/146 (33%), Positives = 79/146 (55%), Gaps = 8/146 (5%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP LK++EG R ++ PK ++AP P WL+ +A EW+R++ LE +
Sbjct 9 RKPKPTGLKVLEGNLGKRPLNHKE----PKPTKKAPRCPSWLEEDAKKEWKRMSKVLESM 64
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
LL D + YC+ ++ + A + + G I +P +G + + P V++A+T +L
Sbjct 65 GLLTDMDMTAFAGYCQAYARWKEAEEFLTKHGSIIKTP-NGYLQQVPQVSIAQTNMKIML 123
Query 123 RLASEFGLTPAAEQRLAVAPGDDGDG 148
+ + +FGLTP+A R+ D DG
Sbjct 124 KFSEQFGLTPSARSRIQ---ADSSDG 146
>gi|332983418|ref|YP_004464859.1| phage terminase, small subunit P27 family [Mahella australiensis
50-1 BON]
gi|332701096|gb|AEE98037.1| phage terminase, small subunit, , P27 family [Mahella australiensis
50-1 BON]
Length=158
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/151 (36%), Positives = 80/151 (53%), Gaps = 12/151 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVP-ESPKFIRQAPDAPDWLDAEALAEWRRVAPTLER 61
RPPKP LK++EG + G R +P + PK PD P WL+ +A W+++ P LE+
Sbjct 6 RPPKPTNLKILEG-----NPGKRPLPSDEPKPTPLTPDCPTWLNKDAKKLWKQLIPELEQ 60
Query 62 LDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSG----VVHRNPAVTVAETA 117
L L+ D +A C+++ ++V + ++ G T G +V R P V + A
Sbjct 61 LGLMTVIDGQAFAALCQSYGIWVECERFLKKNGRTYEYTNKGGAVNIVER-PEVKIGNRA 119
Query 118 RMHLLRLASEFGLTPAAEQRLAV-APGDDGD 147
++ L SEFGLTPAA R+ V A +D D
Sbjct 120 LLNFRSLCSEFGLTPAARTRIEVKAFSEDSD 150
>gi|197303510|ref|ZP_03168549.1| hypothetical protein RUMLAC_02232 [Ruminococcus lactaris ATCC
29176]
gi|197297508|gb|EDY32069.1| hypothetical protein RUMLAC_02232 [Ruminococcus lactaris ATCC
29176]
Length=168
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/141 (35%), Positives = 77/141 (55%), Gaps = 5/141 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP +K +EG +PG+ K P K + P PDWL EA EW R+A + ++
Sbjct 13 RKPKPTAMKKLEG-NPGKRKLNTKEPVPAKGM---PACPDWLMPEAKKEWERLAKLMNQM 68
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A +AYC++++ + A + + + G T + K G + P V +A T + +L
Sbjct 69 GVLTEVDMAAFAAYCQSYARWKEAQEHITSGGSTFETDK-GYQQQTPWVGIANTNQKLML 127
Query 123 RLASEFGLTPAAEQRLAVAPG 143
+ ASEFGLTP++ R+ G
Sbjct 128 QAASEFGLTPSSRSRIVAGNG 148
>gi|342903080|ref|ZP_08724893.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus
urinalis 2285-97]
Length=157
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/149 (33%), Positives = 82/149 (56%), Gaps = 11/149 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R PKP LK++EG +PG+ R +P + PK +AP P WL+ +A EW+R+ L
Sbjct 6 RKPKPTNLKILEG-NPGK----RPLPTNEVKPK--HKAPRCPQWLEDDAKKEWKRMGKIL 58
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
E++ +L D + YC+ ++ + A + + G I +P +G + + P V++++T
Sbjct 59 EQMGILTEMDLTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLK 117
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
+L+ +F LTP+A RLA + G G
Sbjct 118 IMLKFCEQFVLTPSARNRLATMDAEVGTG 146
>gi|254299078|ref|ZP_04966528.1| phage terminase, small subunit, putative, P27 family [Burkholderia
pseudomallei 406e]
gi|157808795|gb|EDO85965.1| phage terminase, small subunit, putative, P27 family [Burkholderia
pseudomallei 406e]
Length=153
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (34%), Positives = 82/154 (54%), Gaps = 13/154 (8%)
Query 3 RPPKPARLKLVE---GRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
R P P +LK+V G+ P + V +P+ D P+WL AEA W +A L
Sbjct 4 RKPTPTQLKIVRANPGKRPLNAHEPKPVCANPE------DVPEWLSAEAREHWPTIAKQL 57
Query 60 ERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARM 119
+L DRA L+ YCE ++++ A ++V GL I +SG ++P +++A
Sbjct 58 ADAGVLSVLDRAALAQYCEAFAIWRQAYEKVLKFGL-IVKAQSGFPVQSPFLSIANVQSE 116
Query 120 HLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFA 153
+LR+ +EFG+TPA+ R+ V+ DD NP+A
Sbjct 117 RMLRILAEFGMTPASRSRVTVSKADDT---NPYA 147
>gi|154504819|ref|ZP_02041557.1| hypothetical protein RUMGNA_02329 [Ruminococcus gnavus ATCC 29149]
gi|153794702|gb|EDN77122.1| hypothetical protein RUMGNA_02329 [Ruminococcus gnavus ATCC 29149]
Length=145
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/115 (34%), Positives = 64/115 (56%), Gaps = 1/115 (0%)
Query 31 PKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRV 90
PK ++AP P WL+ EA EW+R+A LE L +L D A + YC+ ++ + A + +
Sbjct 16 PKPEKKAPRCPAWLEDEAKKEWKRMAKQLEHLGILTEIDMAAFAGYCQAYARWKEAEEFI 75
Query 91 RAEGLTITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDD 145
G + +P SG + P V++A+T + + +FGLTP+A R+ G+D
Sbjct 76 TQHGTIVKTP-SGYWQQVPQVSIAQTYLKIMNKFCEQFGLTPSARSRIVTDSGED 129
>gi|262113736|emb|CAR95403.1| hypothetical protein [Streptococcus phage phi-m46.1]
gi|313575374|emb|CBR26903.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
Length=145
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/142 (31%), Positives = 80/142 (57%), Gaps = 11/142 (7%)
Query 10 LKLVEGRSPGRDSGGRKVPES---PKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDLLK 66
+K++EG +PG+ R +P + PK ++AP P WL+ +A EW+R+ LE++ +L
Sbjct 1 MKILEG-NPGK----RPLPTNEVKPK--QKAPRCPQWLEDDAKKEWKRMGKILEQMGILT 53
Query 67 PEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRLAS 126
D + YC+ ++ + A + + G I +P +G + + P V++++T +L+
Sbjct 54 EMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTP-NGYLQQVPQVSISQTNLKIMLKFCE 112
Query 127 EFGLTPAAEQRLAVAPGDDGDG 148
+FGLTP+A RLA + G G
Sbjct 113 QFGLTPSARNRLATMDSEVGTG 134
>gi|227498315|ref|ZP_03928465.1| phage terminase small subunit [Acidaminococcus sp. D21]
gi|226903777|gb|EEH89695.1| phage terminase small subunit [Acidaminococcus sp. D21]
Length=156
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/136 (33%), Positives = 75/136 (56%), Gaps = 5/136 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP LK++EG +PG +K P PK + P PDWL+ +A EW+R+ L +
Sbjct 6 RKPKPTALKVLEG-NPGHRPLNKKEP-MPK--GRLPRCPDWLEDDAKKEWKRLGKVLAEM 61
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D + YC+ ++ + A + + G + +P +G + + P V++A+T +L
Sbjct 62 GMLTHLDMMAFAGYCQAYARWKGAEEFITQHGDMVRTP-NGYLQQVPQVSIAQTNLKIML 120
Query 123 RLASEFGLTPAAEQRL 138
+ +FGLTP+A R+
Sbjct 121 KFCEQFGLTPSARSRM 136
>gi|218133439|ref|ZP_03462243.1| hypothetical protein BACPEC_01304 [Bacteroides pectinophilus
ATCC 43243]
gi|217990814|gb|EEC56820.1| hypothetical protein BACPEC_01304 [Bacteroides pectinophilus
ATCC 43243]
Length=144
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/111 (34%), Positives = 63/111 (57%), Gaps = 1/111 (0%)
Query 35 RQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEG 94
++AP P WL+ EA EW+R+A LE L +L D A + YC+ ++ + A + + G
Sbjct 19 KKAPRCPAWLEDEAKKEWKRMAKQLEHLGILTEIDMAAFAGYCQAYARWKEAEEFITQHG 78
Query 95 LTITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDD 145
+ +P SG + P V++A+T + + +FGLTP+A R++ G+D
Sbjct 79 TIVKTP-SGYWQQVPQVSIAQTYLKIMNKFCEQFGLTPSARSRISTDSGED 128
>gi|296051581|ref|YP_003632255.1| phage terminase, small subunit, , P27 family [Planctomyces limnophilus
DSM 3776]
gi|296016818|gb|ADG70056.1| phage terminase, small subunit, , P27 family [Planctomyces limnophilus
DSM 3776]
Length=160
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/106 (39%), Positives = 56/106 (53%), Gaps = 3/106 (2%)
Query 38 PDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLT- 96
P+ PDWL L EWRR+ P L LL D S C+ W Y+ A Q+V AEG+
Sbjct 36 PEPPDWLGEHGLNEWRRLQPILSSRGLLTEVDWMAFSLLCQAWHDYIEATQKVAAEGIIA 95
Query 97 ITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAP 142
I ++G ++ PAV VA A +++ EFG TP+A R + P
Sbjct 96 IGGGENGSEYQAPAVGVANKAWQRVIKGCQEFGCTPSA--RTGIVP 139
>gi|76788377|ref|YP_329368.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus
agalactiae A909]
gi|76563434|gb|ABA46018.1| prophage LambdaSa04, terminase, small subunit, P27 family [Streptococcus
agalactiae A909]
Length=137
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/114 (31%), Positives = 64/114 (57%), Gaps = 1/114 (0%)
Query 35 RQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEG 94
++AP P WL+ +A EW+R+ LE++ +L D + YC+ ++ + A + + G
Sbjct 14 QKAPRCPQWLEDDAKKEWKRMGKILEQIGILTEMDMTAFAGYCQAYARWKEAEEFLSKHG 73
Query 95 LTITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDDGDG 148
I +P +G + + P V++++T +L+ +FGLTP+A RLA + G G
Sbjct 74 SIIKTP-NGYLQQVPQVSISQTNLKIMLKFCEQFGLTPSARNRLATMDAEVGTG 126
>gi|302344008|ref|YP_003808537.1| phage terminase, small subunit, , P27 family [Desulfarculus baarsii
DSM 2075]
gi|301640621|gb|ADK85943.1| phage terminase, small subunit, , P27 family [Desulfarculus baarsii
DSM 2075]
Length=151
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/145 (36%), Positives = 75/145 (52%), Gaps = 5/145 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R P P LKL++G + R P P+ AP+ P++L A EW R AP L R+
Sbjct 4 RKPLPTGLKLLKGTA----QNCRLNPSEPRPPVAAPEPPEFLGEVARQEWDRKAPVLMRM 59
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D A L+AYC+ + +V A ++R GL I + V+ NP + VA A +
Sbjct 60 GVLSEGDDAALAAYCQAFERFVEAETKIRQSGLLIKTTGGNVIQ-NPLIGVANRAMEIMH 118
Query 123 RLASEFGLTPAAEQRLAVAPGDDGD 147
+ +EFGLTP++ R+ P D D
Sbjct 119 KFLTEFGLTPSSRSRIVAVPAKDRD 143
>gi|46579915|ref|YP_010723.1| terminase small subunit [Desulfovibrio vulgaris str. Hildenborough]
gi|46449331|gb|AAS95982.1| terminase, small subunit [Desulfovibrio vulgaris str. Hildenborough]
gi|311234085|gb|ADP86939.1| phage terminase, small subunit, , P27 family [Desulfovibrio vulgaris
RCH1]
Length=155
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/144 (34%), Positives = 75/144 (53%), Gaps = 11/144 (7%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R P P+ LK++ G D R P + + P AP L EAL EW R+ L RL
Sbjct 4 RKPIPSNLKVLRGT----DQKCRMNPHEARPNPEIPSAPRHLSREALMEWGRITDELHRL 59
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAE-----GLTITSPKSGVVHRNPAVTVAETA 117
LL DRA L+AYC+ + + A ++ A+ T+T+ + + H P V +A +A
Sbjct 60 GLLSNIDRAALAAYCQAYGRWSEAEAQIYADPDNPRLTTVTANGTTIQH--PLVGIANSA 117
Query 118 RMHLLRLASEFGLTPAAEQRLAVA 141
+ + + +EFG+TP++ R+A A
Sbjct 118 ALLMHKFLTEFGMTPSSRTRVAAA 141
>gi|186472256|ref|YP_001859598.1| P27 family phage terminase small subunit [Burkholderia phymatum
STM815]
gi|184194588|gb|ACC72552.1| phage terminase, small subunit, , P27 family [Burkholderia phymatum
STM815]
Length=158
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/139 (36%), Positives = 74/139 (54%), Gaps = 13/139 (9%)
Query 1 MPRPPKPARLKLVEGRSPGRDSGGRKVPES-PKFIRQAPDAPDWLDAEALAEWRRVAPTL 59
MP+P KP L+++EG + R +P++ PK R P P LDA AL EW R+ P L
Sbjct 1 MPQPRKPTALRIIEG-----NREKRPLPKNEPKPRRGVPQPPAHLDAYALEEWARITPEL 55
Query 60 ERLDLLKPEDRALLSAYCET---WSVYVAAVQRV-RAEGLT---ITSPKSGVVHRNPAVT 112
E + LL D L+AYC+ W A+QR+ + + LT + +G +NP +
Sbjct 56 EAIGLLTTIDGTTLAAYCQCVSRWRQAEEAIQRMKKKDALTSALMIKTSNGNAIQNPLIG 115
Query 113 VAETARMHLLRLASEFGLT 131
VA A ++ ASEFG++
Sbjct 116 VANRAMHMAIKFASEFGMS 134
>gi|326575950|gb|EGE25873.1| P27 family phage terminase small subunit [Moraxella catarrhalis
CO72]
Length=151
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/151 (32%), Positives = 76/151 (51%), Gaps = 5/151 (3%)
Query 3 RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62
R PKP +K + G +PG+ + + P+ + I P P W+ A+ WR V P L
Sbjct 4 RKPKPTAIKELTG-NPGKRALNKNEPKFAQIIEIEP--PVWMTGTAVTMWRTVMPELLAT 60
Query 63 DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLL 122
+L D + A+C ++S + A Q V GL I +G +++NPA+T+ A+ ++
Sbjct 61 GVLTVADVHNVEAFCMSYSRWREAEQEVERYGLVIMD-DNGKLNKNPALTIINEAKTQMM 119
Query 123 RLASEFGLTPAAEQRLAVAPGDDGDGLNPFA 153
+ S GL P++ RL A + NPFA
Sbjct 120 KFGSLLGLDPSSRTRLTGAANSEPIA-NPFA 149
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130065254832
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40