BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1579c
Length=104
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608717|ref|NP_216095.1| phiRv1 phage protein [Mycobacterium... 214 2e-54
gi|126734816|ref|ZP_01750562.1| putative integrase/resolvase rec... 35.0 3.5
gi|319781530|ref|YP_004141006.1| K+-transporting ATPase subunit ... 34.3 6.3
>gi|15608717|ref|NP_216095.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|15843069|ref|NP_338106.1| hypothetical protein MT3573.6 [Mycobacterium tuberculosis CDC1551]
gi|31792765|ref|NP_855258.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
41 more sequence titles
Length=104
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 1 VTPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAVEALESFAKDGTLILRGDTENAYLE 60
+TPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAVEALESFAKDGTLILRGDTENAYLE
Sbjct 1 MTPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAVEALESFAKDGTLILRGDTENAYLE 60
Query 61 AGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSPS 104
AGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSPS
Sbjct 61 AGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSPS 104
>gi|126734816|ref|ZP_01750562.1| putative integrase/resolvase recombinase protein phage-related
integrase [Roseobacter sp. CCS2]
gi|126715371|gb|EBA12236.1| putative integrase/resolvase recombinase protein phage-related
integrase [Roseobacter sp. CCS2]
Length=550
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/89 (32%), Positives = 45/89 (51%), Gaps = 2/89 (2%)
Query 2 TPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAV-EALESFAKDGTLILRGDTENAYLE 60
TP++ +T+D Q + L ++ ++ P+ +V EA+E AKDG +L T+ YL
Sbjct 253 TPLSN-ITDDTVQEVRSLLSRLPANRKKIYPNLSVTEAVERAAKDGQRVLDPVTQAQYLR 311
Query 61 AGGNVLVHADRDWLAFHASYPGNDPLRDA 89
+VL A R L H G PL+ +
Sbjct 312 TLKDVLAVAVRKGLMGHNPAAGVKPLKKS 340
>gi|319781530|ref|YP_004141006.1| K+-transporting ATPase subunit beta [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167418|gb|ADV10956.1| K+-transporting ATPase, B subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length=697
Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 17/59 (29%), Positives = 32/59 (55%), Gaps = 8/59 (13%)
Query 45 DGTLILRGDTENAYLEAGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSP 103
DG+ + +G ++ VL H ++ +A HA+ PG+D +RD + I + + G+P
Sbjct 388 DGSSVRKGAVDS--------VLAHVNQSTVAAHATRPGSDTVRDLQAIADEIAKSGGTP 438
Lambda K H
0.314 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127350764394
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40