BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1580c
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608718|ref|NP_216096.1| phiRv1 phage protein [Mycobacterium... 187 5e-46
gi|289447189|ref|ZP_06436933.1| phiRv1 phage protein [Mycobacter... 167 5e-40
gi|167966956|ref|ZP_02549233.1| putative phiRv1 phage protein [M... 87.0 7e-16
gi|29830606|ref|NP_825240.1| integral membrane protein [Streptom... 33.9 7.3
>gi|15608718|ref|NP_216096.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|15843068|ref|NP_338105.1| hypothetical protein MT3573.5 [Mycobacterium tuberculosis CDC1551]
gi|31792766|ref|NP_855259.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
16 more sequence titles
Length=90
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 MAETPDHAELRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRA 60
MAETPDHAELRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRA
Sbjct 1 MAETPDHAELRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRA 60
Query 61 NCPVDVGKPCPFLIAEGVADSTDDTIEVDQ 90
NCPVDVGKPCPFLIAEGVADSTDDTIEVDQ
Sbjct 61 NCPVDVGKPCPFLIAEGVADSTDDTIEVDQ 90
>gi|289447189|ref|ZP_06436933.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289420147|gb|EFD17348.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
Length=81
Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 10 LRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKP 69
+RRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKP
Sbjct 1 MRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKP 60
Query 70 CPFLIAEGVADSTDDTIEVDQ 90
CPFLIAEGVADSTDDTIEVDQ
Sbjct 61 CPFLIAEGVADSTDDTIEVDQ 81
>gi|167966956|ref|ZP_02549233.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
Length=41
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%), Gaps = 0/41 (0%)
Query 50 MGVADNKWKRANCPVDVGKPCPFLIAEGVADSTDDTIEVDQ 90
MGVADNKWKRANCPVDVGKPCPFLIAEGVADSTDDTIEVDQ
Sbjct 1 MGVADNKWKRANCPVDVGKPCPFLIAEGVADSTDDTIEVDQ 41
>gi|29830606|ref|NP_825240.1| integral membrane protein [Streptomyces avermitilis MA-4680]
gi|29607718|dbj|BAC71775.1| putative integral membrane protein [Streptomyces avermitilis
MA-4680]
Length=285
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 22/67 (33%), Positives = 34/67 (51%), Gaps = 12/67 (17%)
Query 19 FNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKPCPF---LIA 75
++AD +A C+RC A+ + G+PV D W+R + +D +P F L+
Sbjct 27 WSADTHLAACERCRAALA-------EAGDPV--ALDAAWERLDAELDAPRPGMFESLLVR 77
Query 76 EGVADST 82
GVAD T
Sbjct 78 AGVADHT 84
Lambda K H
0.320 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129182109240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40