BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1581c

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608719|ref|NP_216097.1|  phiRv1 phage protein [Mycobacterium...   267    3e-70
gi|15843067|ref|NP_338104.1|  hypothetical protein MT3573.4 [Myco...   266    5e-70
gi|322692755|gb|EFY84646.1|  NmrA family transcriptional regulato...  34.7    4.4  
gi|146341757|ref|YP_001206805.1|  putative alpha/beta hydrolase f...  34.7    5.4  
gi|115372199|ref|ZP_01459510.1|  conserved hypothetical protein [...  34.3    6.0  


>gi|15608719|ref|NP_216097.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|31792767|ref|NP_855260.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
 gi|148661376|ref|YP_001282899.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 17 more sequence titles
 Length=131

 Score =  267 bits (683),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)

Query  1    MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAEL  60
            MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAEL
Sbjct  1    MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAEL  60

Query  61   RYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQL  120
            RYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQL
Sbjct  61   RYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQL  120

Query  121  NAARTALTNPA  131
            NAARTALTNPA
Sbjct  121  NAARTALTNPA  131


>gi|15843067|ref|NP_338104.1| hypothetical protein MT3573.4 [Mycobacterium tuberculosis CDC1551]
 gi|308231875|ref|ZP_07414104.2| hypothetical protein TMAG_02906 [Mycobacterium tuberculosis SUMu001]
 gi|308370272|ref|ZP_07420876.2| hypothetical protein TMBG_03938 [Mycobacterium tuberculosis SUMu002]
 21 more sequence titles
 Length=157

 Score =  266 bits (681),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)

Query  1    MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAEL  60
            MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAEL
Sbjct  27   MTAVAITPASGGRHSVRFAYDSAIVSLIKSTIPAYARSWSAHTRCWFIDADWTPLLAAEL  86

Query  61   RYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQL  120
            RYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQL
Sbjct  87   RYHGHTVTGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVLHPDAPTGCPILQQQL  146

Query  121  NAARTALTNPA  131
            NAARTALTNPA
Sbjct  147  NAARTALTNPA  157


>gi|322692755|gb|EFY84646.1| NmrA family transcriptional regulator [Metarhizium acridum CQMa 
102]
Length=384

 Score = 34.7 bits (78),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 3/48 (6%)

Query  55   LLAAELRYHGHTVTGPAD--PAQQQCTDWAKAL-FRAVGPQRTPAVYR  99
            +L AE +YHGHTV   A+    +++   WA+AL  +AV  Q TPA Y+
Sbjct  273  ILRAESKYHGHTVALVAERLSDEKKLAIWAEALGVKAVYQQVTPAEYK  320


>gi|146341757|ref|YP_001206805.1| putative alpha/beta hydrolase fold-containing protein [Bradyrhizobium 
sp. ORS 278]
 gi|146194563|emb|CAL78588.1| conserved hypothetical protein; putative alpha/beta hydrolase 
fold-containing protein [Bradyrhizobium sp. ORS 278]
Length=261

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 32/108 (30%), Positives = 51/108 (48%), Gaps = 16/108 (14%)

Query  9    ASGGRHSVRFAYDSAIVSLIKSTIPAYARS-WSAHTRCWFIDADWTPLLAAELRYHGHTV  67
            A+GGR     A+DS++ + +      +  S W+ H+R WF    +  +LA +L  HG + 
Sbjct  13   ATGGR-----AFDSSLPAAVFVHGAGFDHSVWALHSR-WFAHHGFA-VLAPDLPGHGRS-  64

Query  68   TGPADPAQQQCTDWAKALFRAVGPQRTPAVYRALSKVL-------HPD  108
             GPA P      DW  AL RAV  +    +  ++  ++       HPD
Sbjct  65   GGPALPTISAMADWIVALLRAVDAKPAHLIGHSMGSLIALDTAARHPD  112


>gi|115372199|ref|ZP_01459510.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818811|ref|YP_003951169.1| hypothetical protein STAUR_1538 [Stigmatella aurantiaca DW4/3-1]
 gi|115370901|gb|EAU69825.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391883|gb|ADO69342.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length=1216

 Score = 34.3 bits (77),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query  80   DWAKALFRAVGP--QRTPAVYRALSKVLHPDAPTGCPILQQQLNAARTAL  127
            +WA  +FR         PAV  A S VL PD P G P+L+ +L+  +T+L
Sbjct  427  EWADGMFRLPFSLDASQPAVVAAQSSVLGPDVPDGPPLLRARLDQTQTSL  476



Lambda     K      H
   0.321    0.130    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131523520100


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40