BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1582c
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
gi|15843066|ref|NP_338103.1| bacteriophage protein [Mycobacteriu... 952 0.0
gi|15608720|ref|NP_216098.1| phiRv1 phage protein [Mycobacterium... 952 0.0
gi|308370271|ref|ZP_07420875.2| phage/plasmid primase, P4 family... 952 0.0
gi|31792768|ref|NP_855261.1| phiRv1 phage protein [Mycobacterium... 951 0.0
gi|254366072|ref|ZP_04982117.1| possible phiRv1 phage protein [M... 505 6e-141
gi|289569622|ref|ZP_06449849.1| phiRv1 phage protein [Mycobacter... 472 8e-131
gi|317125794|ref|YP_004099906.1| phage/plasmid primase, P4 famil... 420 2e-115
gi|254366071|ref|ZP_04982116.1| possible phiRv1 phage protein [M... 394 2e-107
gi|333978842|ref|YP_004516787.1| phage/plasmid primase, P4 famil... 303 4e-80
gi|325110202|ref|YP_004271270.1| phage/plasmid primase, P4 famil... 287 3e-75
gi|313903458|ref|ZP_07836849.1| phage/plasmid primase, P4 family... 278 2e-72
gi|258516810|ref|YP_003193032.1| P4 family phage/plasmid primase... 277 2e-72
gi|222112386|ref|YP_002554650.1| hypothetical protein Dtpsy_3221... 274 2e-71
gi|344172946|emb|CCA85611.1| putative DNA primase, phage/plasmid... 270 4e-70
gi|309781007|ref|ZP_07675746.1| prophage LambdaMc01, DNA primase... 270 4e-70
gi|190573868|ref|YP_001971713.1| hypothetical protein Smlt1886 [... 270 5e-70
gi|17547948|ref|NP_521350.1| hypothetical protein RSc3229 [Ralst... 266 5e-69
gi|300689921|ref|YP_003750916.1| DNA primase, phage/plasmid [Ral... 266 5e-69
gi|285019151|ref|YP_003376862.1| bacteriophage related protein [... 263 5e-68
gi|333993359|ref|YP_004525972.1| hypothetical protein TREAZ_1950... 262 1e-67
gi|255020312|ref|ZP_05292380.1| hypothetical protein ACA_2130 [A... 261 2e-67
gi|229008352|ref|ZP_04165829.1| hypothetical protein bmyco0002_5... 258 2e-66
gi|333998370|ref|YP_004530982.1| hypothetical protein TREPR_2052... 258 2e-66
gi|327439461|dbj|BAK15826.1| predicted ATPase [Solibacillus silv... 256 5e-66
gi|291484307|dbj|BAI85382.1| hypothetical protein BSNT_02817 [Ba... 256 5e-66
gi|228963014|ref|ZP_04124222.1| hypothetical protein bthur0005_6... 256 7e-66
gi|336237244|ref|YP_004589858.1| P4 family phage/plasmid primase... 255 2e-65
gi|333998245|ref|YP_004530857.1| hypothetical protein TREPR_2198... 251 2e-64
gi|52081928|ref|YP_080719.1| phage-like protein [Bacillus lichen... 251 2e-64
gi|118579792|ref|YP_901042.1| P4 family phage/plasmid primase [P... 250 4e-64
gi|23015921|ref|ZP_00055685.1| COG3378: Predicted ATPase [Magnet... 249 5e-64
gi|27383368|ref|NP_774897.1| hypothetical protein bll8257 [Brady... 249 8e-64
gi|22855035|ref|NP_690795.1| hypothetical protein phi105_42 [Bac... 249 8e-64
gi|295002752|gb|ADF59173.1| gp60 [Bacillus phage phi105] 248 2e-63
gi|283853499|ref|ZP_06370741.1| phage/plasmid primase, P4 family... 247 4e-63
gi|229016445|ref|ZP_04173387.1| hypothetical protein bcere0030_1... 246 5e-63
gi|336234574|ref|YP_004587190.1| phage/plasmid primase, P4 famil... 246 6e-63
gi|17545558|ref|NP_518960.1| hypothetical protein RSc0839 [Ralst... 246 8e-63
gi|338810861|ref|ZP_08623099.1| hypothetical protein ALO_02226 [... 246 9e-63
gi|134297351|ref|YP_001121086.1| hypothetical protein Bcep1808_3... 245 1e-62
gi|196037390|ref|ZP_03104701.1| gp60 [Bacillus cereus NVH0597-99... 244 2e-62
gi|334196631|gb|AEG69816.1| bacteriophage-related protein [Ralst... 243 5e-62
gi|299067595|emb|CBJ38799.1| putative DNA primase, phage/plasmid... 243 7e-62
gi|212638627|ref|YP_002315147.1| phage associated DNA primase [A... 241 2e-61
gi|229008912|ref|ZP_04166266.1| hypothetical protein bmyco0002_5... 241 2e-61
gi|304360923|ref|YP_003857043.1| gp71 [Mycobacterium phage CrimD... 239 6e-61
gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase... 239 7e-61
gi|304360825|ref|YP_003856946.1| gp68 [Mycobacterium phage Angel... 239 7e-61
gi|339753800|gb|AEJ93820.1| gp69 [Mycobacterium phage JAWS] 239 1e-60
gi|339755835|gb|AEJ95838.1| gp69 [Mycobacterium phage Adephagia] 239 1e-60
>gi|15843066|ref|NP_338103.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
gi|308376126|ref|ZP_07446144.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu007]
gi|308380119|ref|ZP_07669121.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu011]
gi|308400808|ref|ZP_07493275.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu012]
gi|13883410|gb|AAK47917.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
gi|308344231|gb|EFP33082.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu007]
gi|308362562|gb|EFP51413.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu011]
gi|308366214|gb|EFP55065.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu012]
Length=472
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/471 (100%), Positives = 471/471 (100%), Gaps = 0/471 (0%)
Query 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW
Sbjct 2 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 61
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL
Sbjct 62 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 121
Query 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF
Sbjct 122 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 181
Query 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 240
LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA
Sbjct 182 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 241
Query 241 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV
Sbjct 242 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 301
Query 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS
Sbjct 302 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 361
Query 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW
Sbjct 362 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 421
Query 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 471
QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD
Sbjct 422 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 472
>gi|15608720|ref|NP_216098.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148661377|ref|YP_001282900.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|167966959|ref|ZP_02549236.1| bacteriophage protein [Mycobacterium tuberculosis H37Ra]
17 more sequence titles
gi|289443035|ref|ZP_06432779.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289447191|ref|ZP_06436935.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289751280|ref|ZP_06510658.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289753669|ref|ZP_06513047.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|306775768|ref|ZP_07414105.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu001]
gi|306805291|ref|ZP_07441959.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu008]
gi|306971876|ref|ZP_07484537.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu010]
gi|2117255|emb|CAB09087.1| Probable phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148505529|gb|ABQ73338.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|289415954|gb|EFD13194.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289420149|gb|EFD17350.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289691867|gb|EFD59296.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289694256|gb|EFD61685.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|308215857|gb|EFO75256.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu001]
gi|308348162|gb|EFP37013.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu008]
gi|308358730|gb|EFP47581.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu010]
gi|323717855|gb|EGB27045.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=471
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/471 (100%), Positives = 471/471 (100%), Gaps = 0/471 (0%)
Query 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW
Sbjct 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL
Sbjct 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
Query 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF
Sbjct 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
Query 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 240
LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA
Sbjct 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 240
Query 241 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV
Sbjct 241 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
Query 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS
Sbjct 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
Query 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW
Sbjct 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
Query 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 471
QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD
Sbjct 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 471
>gi|308370271|ref|ZP_07420875.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu002]
gi|308378333|ref|ZP_07482245.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu009]
gi|308324799|gb|EFP13650.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu002]
gi|308352847|gb|EFP41698.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu009]
Length=501
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/471 (100%), Positives = 471/471 (100%), Gaps = 0/471 (0%)
Query 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW
Sbjct 31 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 90
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL
Sbjct 91 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 150
Query 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF
Sbjct 151 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 210
Query 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 240
LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA
Sbjct 211 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 270
Query 241 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV
Sbjct 271 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 330
Query 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS
Sbjct 331 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 390
Query 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW
Sbjct 391 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 450
Query 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 471
QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD
Sbjct 451 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 501
>gi|31792768|ref|NP_855261.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|31618358|emb|CAD96276.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
Length=471
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/471 (99%), Positives = 471/471 (100%), Gaps = 0/471 (0%)
Query 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW
Sbjct 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL
Sbjct 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
Query 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
VPFAAT+ADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF
Sbjct 121 VPFAATLADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
Query 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 240
LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA
Sbjct 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTA 240
Query 241 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV
Sbjct 241 EPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
Query 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS
Sbjct 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
Query 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW
Sbjct 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
Query 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 471
QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD
Sbjct 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD 471
>gi|254366072|ref|ZP_04982117.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151585|gb|EBA43630.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
Length=248
Score = 505 bits (1301), Expect = 6e-141, Method: Compositional matrix adjust.
Identities = 247/248 (99%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
Query 224 VFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKR 283
+FDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKR
Sbjct 1 MFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKR 60
Query 284 LTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQ 343
LTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQ
Sbjct 61 LTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQ 120
Query 344 DRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECV 403
DRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECV
Sbjct 121 DRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECV 180
Query 404 TSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
TSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV
Sbjct 181 TSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 240
Query 464 RGADDFDD 471
RGADDFDD
Sbjct 241 RGADDFDD 248
>gi|289569622|ref|ZP_06449849.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
gi|289543376|gb|EFD47024.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
Length=240
Score = 472 bits (1214), Expect = 8e-131, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%), Gaps = 0/235 (0%)
Query 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW
Sbjct 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL
Sbjct 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
Query 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF
Sbjct 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
Query 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD 235
LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD
Sbjct 181 LTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD 235
>gi|317125794|ref|YP_004099906.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM
43043]
gi|315589882|gb|ADU49179.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM
43043]
Length=463
Score = 420 bits (1080), Expect = 2e-115, Method: Compositional matrix adjust.
Identities = 229/448 (52%), Positives = 307/448 (69%), Gaps = 9/448 (2%)
Query 23 LIDDGGKPT----QVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKR 78
+ D+ G+P + H GQ R+AYRLA RY D+LL+V G+GWH +DG+RWA DD+G A+R
Sbjct 9 IFDENGRPMSSSGENHTGQVRMAYRLARRYVDRLLYVHGLGWHHFDGKRWAEDDQGHARR 68
Query 79 AVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLN 138
AVL LR++L++S+ DK+LR DV +CESA+GV+GVLD+AAALV FAATV D+D+DP LLN
Sbjct 69 AVLEVLRESLAESVGDKQLRMDVTRCESAAGVSGVLDIAAALVEFAATVRDVDADPWLLN 128
Query 139 VANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLA 198
ANGTLDL T LRPH P+DR+TK+ GAY + +S W AFL VLPD+ R ++QR+
Sbjct 129 CANGTLDLRTRALRPHDPSDRLTKVTTGAYDPEADSSEWHAFLASVLPDQDERAYLQRVI 188
Query 199 GVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGE-- 256
G + G VREH+ +LIGVGANGK AI +A+GDYA P+L M RE G
Sbjct 189 GQSVYGRVREHLFPVLIGVGANGKGTTYGAISHAMGDYASIINPELLMVRERGGVGGPEM 248
Query 257 MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLP 316
M L G R V SE+E R+L E+ +KRLTGGD + AR++ ++ V + PSH + +TNHLP
Sbjct 249 MTLMGARLVIGSETEDGRKLDETLMKRLTGGDELTARRLYREPVSWRPSHQLIYVTNHLP 308
Query 317 RVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQ-RIGLS 375
+V G+D A WRRIRVVPF+VV+P ++D EL RL L AD+IL+W +AG DY+ G+
Sbjct 309 KVKGNDPATWRRIRVVPFDVVVPVMQRDPELPERLALHADAILTWVIAGHFDYEDNGGMR 368
Query 376 QPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRK 435
+P +V+ AT ++ DSD + RFI +EC T V T L+ AW+RW V EG E+S +
Sbjct 369 EPASVVRATGAFQADSDAVARFIAEECETGDYV-HVRTRDLYGAWRRWAVSEGADEMSER 427
Query 436 AFGQSLDTHGYPVTDKARDGRWRAGIAV 463
AF + LD GY + R+G RAG+ +
Sbjct 428 AFAKELDRLGYEAR-RTRNGAVRAGLTL 454
>gi|254366071|ref|ZP_04982116.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151584|gb|EBA43629.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
Length=240
Score = 394 bits (1012), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 195/196 (99%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW
Sbjct 1 MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGW 60
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL
Sbjct 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAAL 120
Query 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF
Sbjct 121 VPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAF 180
Query 181 LTRVLPDEGVRGFVQR 196
LTRVLPDEGVRGF+QR
Sbjct 181 LTRVLPDEGVRGFLQR 196
>gi|333978842|ref|YP_004516787.1| phage/plasmid primase, P4 family [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333822323|gb|AEG14986.1| phage/plasmid primase, P4 family [Desulfotomaculum kuznetsovii
DSM 6115]
Length=754
Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 179/446 (41%), Positives = 249/446 (56%), Gaps = 12/446 (2%)
Query 29 KPTQVHRGQARIAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQA 87
+P+ H A RL RY L + G W W G+ W D+ G R +R
Sbjct 291 QPSGEHLTDLGNARRLVARYGQDLRYCHPWGKWLVWTGKGWKVDETGAVLRLAKETVRNI 350
Query 88 LSDSLNDKELRADVR------KCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVAN 141
+++ + + +A R + ESA + ++ LA + A+LD DP LLNV N
Sbjct 351 YAEAAAEPDEKARQRIVDHALRSESAGRIKAMVALAESEPGIPVLPAELDRDPWLLNVLN 410
Query 142 GTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVL-PDEGVRGFVQRLAGV 200
GT+DL T +LRPH D +TKI Y + P W+ FL ++ + + GF+QR G+
Sbjct 411 GTIDLRTGELRPHRREDMLTKIAPVEYDPQAKCPRWEQFLNEIMDGNRNLMGFLQRAVGM 470
Query 201 GLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHREN-AHPTGEMDL 259
L G EHVL IL G G NGKS F + LGDY TA PDL M ++N HPT DL
Sbjct 471 SLTGDTSEHVLFILHGSGRNGKSTFLNTLLALLGDYGMTAAPDLLMAKQNDRHPTELADL 530
Query 260 RGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVP 319
G R V ES++ RRLAES IK+LTGGD I+AR+MR+DF EF+PSH L TNH PRV
Sbjct 531 FGKRLVVSIESDEGRRLAESLIKQLTGGDKIKARRMREDFWEFSPSHKLWLATNHKPRVR 590
Query 320 GDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDA 379
G D AIW R++++PF V P D+QD++L +L E IL WAV G +QR GL P+
Sbjct 591 GTDVAIWSRLKLIPFAVTFPEDKQDKQLAKKLLAELPGILRWAVEGCLTWQRDGLGVPEE 650
Query 380 VLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQ 439
V AAT +YR++ D + F+ +EC +P+ K +L++A+ W + G ++++ FG
Sbjct 651 VKAATESYRQEQDVLAAFL-NECCIINPLAKVAARNLYKAYVDWCGENGEHPLAQRNFGM 709
Query 440 SLDTHGYPVTDKARDGRWR-AGIAVR 464
L G+ V+ K GR+ GI +R
Sbjct 710 RLAERGF-VSKKGTAGRYFWEGIGLR 734
>gi|325110202|ref|YP_004271270.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
5305]
gi|324970470|gb|ADY61248.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
5305]
Length=707
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 171/413 (42%), Positives = 231/413 (56%), Gaps = 13/413 (3%)
Query 60 WHSWDGRRWAADDRGEAKR---AVLAELRQALSDSLND--KELRADVRKCESASGVAGVL 114
W W+G+RW D + R +V + ++D D K+ +K S G+ L
Sbjct 295 WLIWNGQRWEPDRTSQILRRAKSVYEFWMEQIADMHPDDAKDAIKHAQKSASTRGMEQFL 354
Query 115 DLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTES 174
AAA+VP T DL+ DP L N NGTLDL T +LRPH AD +T IC AY D S
Sbjct 355 KQAAAMVP--VTTDDLNRDPWLFNCPNGTLDLRTGELRPHNRADLLTVICPTAYNPDAPS 412
Query 175 PLWQAFLTRVLPDEG-VRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYAL 233
W FL D G V F+QRL G L+G VR+H+L + G GANGKS AI L
Sbjct 413 FTWDGFLESTFADHGDVIPFLQRLFGAALVGIVRDHILPVFWGSGANGKSTLLNAIMAIL 472
Query 234 G-DYACTAEPDLFMHR-ENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIR 291
G DYA A P++ ++ HPT DL G R+VA E+E RRL ES +K LTGGD IR
Sbjct 473 GGDYALQAVPEMLCDSDQDRHPTERADLYGKRFVAAVETEAGRRLKESFVKALTGGDRIR 532
Query 292 ARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARL 351
AR + QDF EF PSH +L +NH P+V GDD IWRR+R+VPF + D +L +L
Sbjct 533 ARHLYQDFFEFDPSHLIVLCSNHKPKVIGDDYGIWRRLRLVPFTATFKGSDADPQLPEKL 592
Query 352 QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKA 411
Q EA+ +L+W V G D+Q GL++P+ VL ATS Y+ +SD I FID C T+ ++
Sbjct 593 QAEAEGVLAWMVRGCLDWQAQGLNEPETVLQATSEYKNESDVIGGFIDACCYTND-RMQV 651
Query 412 TTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVR 464
+ + + A++ W + G SR G++L+ V + GRW G+ ++
Sbjct 652 SFSQFYTAFEEWCNESGENLPSRTRTGRTLNERFEQVPNVR--GRWYRGLGLK 702
>gi|313903458|ref|ZP_07836849.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus
DSM 13965]
gi|313466279|gb|EFR61802.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus
DSM 13965]
Length=849
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/460 (38%), Positives = 249/460 (55%), Gaps = 14/460 (3%)
Query 13 APWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGI-GWHSWDGRRWAAD 71
A W + D V +P H A RL R+ L + + W +DGRRW D
Sbjct 296 AEWTNMDQSVA---SAQPAMEHFTDLGNAKRLVRRHGKNLRYCPELEKWLVYDGRRWVVD 352
Query 72 DRGE----AKRAVLAELRQA--LSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAA 125
GE AK V + ++A ++D K+L ESAS + +++LA
Sbjct 353 KTGEVMRRAKETVQSMYQEAAQIADEDKRKKLVQWALNSESASKLKHMVELAQTEPGIPV 412
Query 126 TVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVL 185
+ LD DP LLN NGT+DL + +LRPH D ITK+ Y D ++PLW+ FL R++
Sbjct 413 KPSQLDRDPWLLNCLNGTIDLRSGELRPHRRDDLITKLVPVEYDPDAKAPLWEKFLHRIM 472
Query 186 P-DEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDL 244
++ + F+QR G L G E VL +L G GANGKS F + +R GDY AE
Sbjct 473 NGNQRLIEFLQRAVGYTLTGDTSEQVLFLLYGTGANGKSTFLEVLRSLFGDYGQQAEFST 532
Query 245 FMHRENAHPTGEM-DLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFT 303
F+ R+ ++ L G R+V+ +E+E+ RR +E IK+LTGGDTI AR + +++ EF
Sbjct 533 FLARDTERVRNDLARLVGKRFVSAAEAEEGRRWSEVVIKQLTGGDTITARFLYREYFEFR 592
Query 304 PSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAV 363
P+ L NH PRV G D AIWRR+R++PF V IP E+DR+L ++L E IL+WAV
Sbjct 593 PAMKLWLAANHKPRVRGTDYAIWRRLRLIPFTVTIPEGERDRDLSSKLCQELQGILAWAV 652
Query 364 AGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRW 423
G + GL P V+ AT+ YRE+ D I +FI+ CV P + T L++A+ +W
Sbjct 653 QGCLKWLDRGLDAPPEVMEATNQYREEQDVIAQFIEAACV-PHPNTRVNATDLYKAYLKW 711
Query 424 RVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
G +S FG+ L+ G+P T K + ++R GI +
Sbjct 712 CEDVGERPVSLTEFGERLNEKGFP-TKKIQGLKYRLGIGL 750
>gi|258516810|ref|YP_003193032.1| P4 family phage/plasmid primase [Desulfotomaculum acetoxidans
DSM 771]
gi|257780515|gb|ACV64409.1| phage/plasmid primase, P4 family [Desulfotomaculum acetoxidans
DSM 771]
Length=798
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/406 (40%), Positives = 230/406 (57%), Gaps = 14/406 (3%)
Query 60 WHSWDGRRWAADDRGE----AKRAVLAELRQALSDSLNDKELRADV----RKCESASGVA 111
W W+G+ W D+ G AK V++ +A +S D+ LR + RK E+AS +
Sbjct 330 WLIWNGKFWEIDNTGAVVRLAKNTVMSIYAEASKES--DEGLRKALVDHARKSEAASRIK 387
Query 112 GVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSD 171
++ LA + + LD++ LLN NGT+DL T KL PH D ITKI Y+ D
Sbjct 388 AMITLAESEEGIPISPDQLDNNRWLLNCLNGTVDLKTGKLLPHRRDDYITKIAPVEYRPD 447
Query 172 TESPLWQAFLTRVLPD-EGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIR 230
E P+W FL ++ D + + F+QR AG+ L G V EHVL +L G G NGKS +
Sbjct 448 VECPIWHTFLNEIMEDNQNLVSFLQRAAGMCLTGDVSEHVLFVLHGNGRNGKSTLLNIML 507
Query 231 YALGDYACTAEPDLFMHRENA-HPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDT 289
+ DY+ A PDL M + N HPT DL G R V ES++ RR+AES IK+LTGGD
Sbjct 508 DIMNDYSIQAPPDLLMAKHNERHPTELADLFGKRLVVSIESDEGRRMAESLIKQLTGGDK 567
Query 290 IRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDA 349
I+AR+MR+DF EF PSH L TNH P+V G DTAIW R++++PF V A ++++L A
Sbjct 568 IKARRMREDFWEFWPSHKLWLATNHKPQVRGTDTAIWSRLKLIPFNVSF-AGRENKQLPA 626
Query 350 RLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVL 409
+L E I W V G +QR GL PD V AAT YR + DT+ F+ + C+T +P++
Sbjct 627 KLLTEKPGIFKWLVEGCLAWQREGLGVPDEVQAATEIYRTEQDTLGNFLTEHCIT-NPLV 685
Query 410 KATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
+ + ++ A++ W +S+K FG L G+ + + G
Sbjct 686 RVPASDIYRAYKAWCENNNEYVLSQKIFGTRLSERGFNKSRGTKTG 731
>gi|222112386|ref|YP_002554650.1| hypothetical protein Dtpsy_3221 [Acidovorax ebreus TPSY]
gi|221731830|gb|ACM34650.1| phage/plasmid primase, P4 family [Acidovorax ebreus TPSY]
Length=760
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/430 (40%), Positives = 228/430 (54%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VAG G W WDG+RW +D A + + RQ + N K
Sbjct 326 LALSFTRRYHRDWRYVAGWGKWLVWDGQRWRTEDTLAATDLIRSVCRQTAVRADNPKV-- 383
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K SAS V GV LA A AAT + D+DP LLN G +DL T ++RPH AD
Sbjct 384 --AAKLASASTVGGVERLARADRRHAATTDEWDADPWLLNTPGGVVDLKTGRMRPHERAD 441
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TKI D P W+ F+ V D+ ++ ++QR+ G L G+ +EH L L G
Sbjct 442 RMTKITTATPSGD--CPTWKQFIDEVTGGDKELQSYLQRMVGYALTGSTQEHALFFLYGT 499
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+ +R
Sbjct 500 GANGKSVFVNTLATILGDYATNAPMDTFMETRTDRHPTDMAGLRGARFVAAIETEQGKRW 559
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF +
Sbjct 560 AESKLKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHRPAIRNIDEAMKRRLHLIPFTI 619
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G D+QR G LS P V+ AT Y E D +
Sbjct 620 TVPPERRDKNLQQKLLAERDGILAWAVQGCLDWQRHGRLSPPQRVVDATEEYFEAEDALG 679
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R++D+ CV + K+ T LF W+ W G S+K F L G
Sbjct 680 RWLDERCVREANA-KSLTAELFNDWKPWAEAAGEFTGSQKRFADLLLNRGL--------D 730
Query 456 RWRAGIAVRG 465
+WR G+ +RG
Sbjct 731 KWRNGMGLRG 740
>gi|344172946|emb|CCA85611.1| putative DNA primase, phage/plasmid [Ralstonia syzygii R24]
Length=759
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 172/430 (40%), Positives = 225/430 (53%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VA G W WDG RW +D A + R A ++ N K
Sbjct 325 LALAFTRRYHRDWRYVAAWGRWLVWDGHRWRTEDTLAAVDLIRNVCRHAAVNADNPKL-- 382
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K ++ V GV LA A AAT ++ D+DP LLN G +DL T + RPH AD
Sbjct 383 --AAKLATSGTVGGVERLARADRRHAATTSEWDADPWLLNTPGGVVDLRTGRQRPHDRAD 440
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TKI D P W+ FL V D ++ ++QR+AG L G+ +EH L L G
Sbjct 441 RMTKITTATPGGD--CPTWRQFLAEVTGGDAELQAYLQRMAGYALTGSTQEHALFFLYGT 498
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+ RR
Sbjct 499 GANGKSVFVNTLATILGDYAANAAMDTFMETRTDRHPTDMAGLRGARFVAAIETEQGRRW 558
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF V
Sbjct 559 AESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTV 618
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G D+QR+G L P VL AT Y E D +
Sbjct 619 TVPPERRDKHLQQKLLAERDGILAWAVQGCLDWQRLGRLDPPQQVLDATEEYFEAEDALG 678
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R++D+ CV + K+ T LF W++W G S+K F L T G
Sbjct 679 RWLDERCVREANA-KSLTAELFNDWKQWAEAAGEFAGSQKRFADLLLTRGVE-------- 729
Query 456 RWRAGIAVRG 465
+WR +RG
Sbjct 730 KWRNTAGLRG 739
>gi|309781007|ref|ZP_07675746.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp. 5_7_47FAA]
gi|330824596|ref|YP_004387899.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
K601]
gi|308920310|gb|EFP65968.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp. 5_7_47FAA]
gi|329309968|gb|AEB84383.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
K601]
Length=766
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 170/430 (40%), Positives = 227/430 (53%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VAG G W WDG+RW +D A + + RQ + N K
Sbjct 332 LALSFTRRYHRDWRYVAGWGKWLVWDGQRWRTEDTLAATDLIRSVCRQTAVRADNPKV-- 389
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K SA V GV LA A AAT + D+DP LLN G +DL T ++R H AD
Sbjct 390 --AAKLASAGTVGGVERLARADRRHAATTDEWDADPWLLNTPGGVVDLKTGRMRTHERAD 447
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TKI D P W+ F+ V D+ ++ ++QR+ G L G+ +EH L L G
Sbjct 448 RMTKITTATPSGD--CPTWRQFIDEVTGGDQELQSYLQRMVGYALTGSTQEHALFFLYGT 505
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + L DYA A D FM R + HPT LRG R+VA E+E+ +R
Sbjct 506 GANGKSVFVNTLATILRDYATNAPMDTFMETRTDRHPTDMAGLRGARFVAAIETEQGKRW 565
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF +
Sbjct 566 AESKLKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTI 625
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G D+QR G LS P V+ AT Y E D +
Sbjct 626 TVPPERRDKNLQQKLLAERDGILAWAVQGCLDWQRHGRLSPPQRVVDATEEYFEAEDALG 685
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R++D+ CV P K+ T LF W++W G +++ F L T G
Sbjct 686 RWLDERCV-REPNAKSLTAELFNDWKQWAEASGEFVGAQRRFSDLLITRGL--------D 736
Query 456 RWRAGIAVRG 465
+WR G+ VRG
Sbjct 737 KWRNGMGVRG 746
>gi|190573868|ref|YP_001971713.1| hypothetical protein Smlt1886 [Stenotrophomonas maltophilia K279a]
gi|190011790|emb|CAQ45410.1| putative phage-related protein [Stenotrophomonas maltophilia
K279a]
Length=766
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 169/430 (40%), Positives = 225/430 (53%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VA G W WDG+RW +D A + + RQ + N K
Sbjct 332 LALAFTRRYHRDWRYVAAWGRWLVWDGQRWRTEDTLAATDLIRSVCRQTAVRADNPKV-- 389
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K S+ V+GV LA A AAT + D+DP LLN G +DL T + RPH AD
Sbjct 390 --AAKLASSGTVSGVERLARADRRHAATTDEWDADPWLLNTPGGVVDLKTGRQRPHERAD 447
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TK+ E P W F+ V D+ ++ ++QR+ G L G +EH L L G
Sbjct 448 RMTKVTTAT--PSGECPTWLQFIDEVTGGDQALQAYLQRMVGYALTGATQEHALFFLYGT 505
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+ RR
Sbjct 506 GANGKSVFVNTLATILGDYATNAPMDTFMETRTDRHPTDMAGLRGARFVAAIETEQGRRW 565
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF +
Sbjct 566 AESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTI 625
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G D+QR G L P V+ AT Y E D +
Sbjct 626 TVPPERRDKHLQQKLLAERDGILAWAVQGCLDWQRHGRLDPPQRVVEATEEYFEAEDALG 685
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R++D+ CV + K+ T LF W++W G S+K F L T G
Sbjct 686 RWLDERCVREANA-KSLTAELFNDWKQWAEAAGEFTGSQKRFADLLLTRGL--------D 736
Query 456 RWRAGIAVRG 465
+WR G+ +RG
Sbjct 737 KWRNGMGLRG 746
>gi|17547948|ref|NP_521350.1| hypothetical protein RSc3229 [Ralstonia solanacearum GMI1000]
gi|17430254|emb|CAD17017.1| putative bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length=759
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 170/430 (40%), Positives = 224/430 (53%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VA G W WDG RW +D A + R A + N +
Sbjct 325 LALAFTRRYHRDWRYVAAWGRWLVWDGHRWRTEDTLAATDLIRNVCRHAALHAENPRL-- 382
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K ++ +AGV LA A AAT ++ D+DP LLN G +DL T + RPH D
Sbjct 383 --AAKLATSGTIAGVERLARADRRHAATTSEWDADPWLLNTPGGVVDLRTGRQRPHDRDD 440
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TKI D P W+ FL V D ++ ++QR+AG L G+ +EH L L G
Sbjct 441 RMTKITTATPVGD--CPTWRQFLAEVTGGDVELQAYLQRMAGYALTGSTQEHALFFLYGT 498
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+ RR
Sbjct 499 GANGKSVFVNTLATILGDYAANAAMDTFMETRADRHPTDMAGLRGARFVAAIETEQGRRW 558
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF V
Sbjct 559 AESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTV 618
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G D+QR+G L P VL AT Y E D +
Sbjct 619 TVPPERRDKHLQQKLLAERDGILAWAVQGCLDWQRLGRLDPPQQVLDATEEYFEAEDALG 678
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R++D+ CV + K+ T LF W++W G S+K F L T G
Sbjct 679 RWLDERCVREANA-KSLTAELFNDWKQWAEAAGEFAGSQKRFADLLLTRGVE-------- 729
Query 456 RWRAGIAVRG 465
+WR +RG
Sbjct 730 KWRNTAGLRG 739
>gi|300689921|ref|YP_003750916.1| DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
gi|299076981|emb|CBJ49594.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
Length=759
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 170/430 (40%), Positives = 223/430 (52%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VA G W WDG RW +D A + R A + N K
Sbjct 325 LALAFTRRYHRDWRYVAAWGRWLVWDGHRWRTEDTLAATDLIRNVCRHAALHAENPKL-- 382
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K ++ +AGV LA A AAT ++ D+DP LLN +DL T + RPH D
Sbjct 383 --AAKLATSGTIAGVERLARADRRHAATTSEWDADPWLLNTPGSVVDLRTGRQRPHDRDD 440
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TKI D P W+ FL V D ++ ++QR+AG L G+ +EH L L G
Sbjct 441 RMTKITTATPGGD--CPTWRQFLAEVTGGDAELQAYLQRMAGYALTGSTQEHALFFLYGT 498
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+ RR
Sbjct 499 GANGKSVFVNTLATILGDYAANAAMDTFMETRTDRHPTDMAGLRGARFVAAIETEQGRRW 558
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF V
Sbjct 559 AESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTV 618
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G D+QR+G L P VL AT Y E D +
Sbjct 619 TVPPERRDKHLQQKLLAERDGILAWAVQGCLDWQRLGRLDPPQQVLDATEEYFEAEDALG 678
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R++D+ CV + K+ T LF W++W G S+K F L T G
Sbjct 679 RWLDERCVREANA-KSLTAELFNDWKQWAEAAGEFAGSQKRFADLLLTRGVE-------- 729
Query 456 RWRAGIAVRG 465
+WR +RG
Sbjct 730 KWRNTAGLRG 739
>gi|285019151|ref|YP_003376862.1| bacteriophage related protein [Xanthomonas albilineans GPE PC73]
gi|283474369|emb|CBA16870.1| putative bacteriophage related protein [Xanthomonas albilineans]
Length=754
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 173/430 (41%), Positives = 224/430 (53%), Gaps = 19/430 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY +VA G W WDG+RW +D A + + R A + N K
Sbjct 320 LALAFTRRYHRDWRYVATWGRWLVWDGQRWRTEDTLAATDLIRSVCRHAAVHADNAKI-- 377
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K SA V+GV LA A AAT A+ D+DP LLN G +DL T + R H AD
Sbjct 378 --ATKLASAGTVSGVERLARADRRHAATTAEWDADPWLLNTPGGVVDLRTGRRRTHERAD 435
Query 159 RITKICRGAYQSDTESPLWQAFLTRVL-PDEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
RITKI A SD P+WQ FL + D ++ ++QR+ G L G+ +EH L L G
Sbjct 436 RITKITT-ATPSDG-CPIWQRFLAEITDQDNELQAYLQRMVGYALTGSTQEHALFFLYGT 493
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + GDYA A D FM R + HPT LRG R+VA E+E+ RR
Sbjct 494 GANGKSVFVNTLVTIFGDYAANAPMDTFMETRADRHPTDMAGLRGSRFVAAIETEQGRRW 553
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF +
Sbjct 554 AESKLKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHRPAIRNIDEAMKRRLHLIPFTI 613
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTIK 395
+P + +D+ L +L E D IL+WAV G +QR+G L+ P VL AT Y E D +
Sbjct 614 TVPPERRDKHLQEKLLNERDGILAWAVQGCLYWQRLGRLAPPQQVLQATEEYFEAEDALG 673
Query 396 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDG 455
R+I + CV K+ T LF W+ W G S+K F L T G
Sbjct 674 RWIGERCVRHVNA-KSLTAELFNDWKLWADDAGEFIGSQKRFADLLLTRGLE-------- 724
Query 456 RWRAGIAVRG 465
+WR +RG
Sbjct 725 KWRNSTGLRG 734
>gi|333993359|ref|YP_004525972.1| hypothetical protein TREAZ_1950 [Treponema azotonutricium ZAS-9]
gi|333736602|gb|AEF82551.1| conserved hypothetical protein [Treponema azotonutricium ZAS-9]
Length=464
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/437 (35%), Positives = 229/437 (53%), Gaps = 11/437 (2%)
Query 41 AYRLAERY-QDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLN--DKEL 97
A +L E Y +D + A W WDGR W DD L +R + L D
Sbjct 30 AEKLKEIYGRDIRYNAAWKKWIVWDGRSWVIDDGALIHEKGLEMVRGLYEEQLKTTDYRE 89
Query 98 RADVRK----CESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRP 153
R D+ K E+ + A+ ++ T +LD++P LLNV NGT+D+ T + R
Sbjct 90 RMDIEKYAMLSENVRRREAFIKAASWIIELNITSEELDTNPWLLNVQNGTIDILTGEFRE 149
Query 154 HAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEG-VRGFVQRLAGVGLLGTVREHVLA 212
H D ITKI Y + P W+ F+ ++ G + F+Q +AG+G+ G V E +
Sbjct 150 HRQEDMITKIANVEYDPKADCPAWKQFVREIMNYNGDIITFLQTVAGLGITGDVSEQSMF 209
Query 213 ILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEM-DLRGVRWVAVSESE 271
IL G GANGKS F I Y LGDY T D FM R N T ++ LRG R+V +E +
Sbjct 210 ILFGSGANGKSTFLNTIMYLLGDYGITTTTDTFMKRNNEQITNDIARLRGARFVTTTEID 269
Query 272 KDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRV 331
+ +RL+E IK++TG D I AR + ++ + P++ + TNH P + G D IWRRI++
Sbjct 270 QGKRLSEPLIKQITGNDKITARFLYGEYFSYMPTYKIFMGTNHKPIIRGTDYGIWRRIKL 329
Query 332 VPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDS 391
+PF I D+QD+ L+ +L+ EA IL+W + G +++ GL P+ +++AT++Y+ +
Sbjct 330 IPFTTRIEVDKQDKHLEEKLRAEASGILNWLLEGTYRWRKEGLKVPEVIVSATNDYQGEM 389
Query 392 DTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDK 451
D I F+ EC SP + LF+A+Q W Q +S + L G+ T
Sbjct 390 DVIGNFL-KECCIQSPGISIRIRELFKAYQEWCEQNNERAVSERLLSMRLKEMGFSRTRS 448
Query 452 ARDGRWRAGIAVRGADD 468
A + R+ +GI ++ +
Sbjct 449 A-EARYWSGIMLKAKTE 464
>gi|255020312|ref|ZP_05292380.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC
51756]
gi|254970232|gb|EET27726.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC
51756]
Length=766
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 165/429 (39%), Positives = 223/429 (52%), Gaps = 16/429 (3%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RYQ +VA G W WDG+RW A++ A + R A + N +
Sbjct 331 LALSFTRRYQRDWRYVAAWGKWLMWDGQRWRAEETLAATDLIRHVCRHAAVRADNARL-- 388
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
K ++S V GV LA AAT + D+DP LLN G +DL T ++RPH AD
Sbjct 389 --ATKLAASSTVGGVERLARTDRRHAATPDEWDADPWLLNTQGGVVDLRTGRMRPHDRAD 446
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGV 217
R+TKI + P W FL +V D ++ ++QR+ G L G+ EH L L G
Sbjct 447 RMTKIAPATLVPGSACPTWIRFLEQVTGGDAELQAYLQRMVGYCLTGSTAEHALFFLYGT 506
Query 218 GANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRRL 276
GANGKSVF + LGDYA A D FM R + HPT LRG R V +E+E+ RR
Sbjct 507 GANGKSVFVNTLATILGDYAANAPMDTFMEARGDRHPTDLAGLRGARLVTATETEQGRRW 566
Query 277 AESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEV 336
E+ IK +TGGD I AR MRQDF + P ++ NH P + D A+ RR+ ++PF V
Sbjct 567 NEAKIKEITGGDRITARFMRQDFFTYVPQFKLVIAGNHKPAIRNVDEAMRRRLHLIPFTV 626
Query 337 VIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKR 396
IP + +D+ L +L E D IL+WAV G +QR GL P +VL AT Y E D + R
Sbjct 627 TIPPERRDKTLQQKLLAERDGILAWAVQGCLAWQREGLRPPQSVLDATDEYFEAEDALGR 686
Query 397 FIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGR 456
++++ CV P K+ LF W++W G S+K F L T G +
Sbjct 687 WLEERCV-RDPNAKSLVAELFSDWKQWAEAAGEFVGSQKRFSDLLLTRGLE--------K 737
Query 457 WRAGIAVRG 465
WR G+ +RG
Sbjct 738 WRNGMGLRG 746
>gi|229008352|ref|ZP_04165829.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
gi|228752920|gb|EEM02472.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
Length=784
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/425 (33%), Positives = 234/425 (56%), Gaps = 7/425 (1%)
Query 41 AYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRAD 100
A R+A Y + +V+ IGW WDG+RW D + E +R + A++ ++L S ++ E++
Sbjct 334 AERIAYEYGHVIKYVSDIGWFIWDGKRWKLDTKKEIER-ITAKVLRSLYKSEDESEMKW- 391
Query 101 VRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRI 160
R CE + + LVP D D +L NV NG +DL T KL+ H +
Sbjct 392 ARMCERRNIRMNSIKDLMPLVP--GEREDFDRHKYLFNVENGIVDLKTGKLQQHDRELGL 449
Query 161 TKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGVGA 219
TKI A+ +T+ P W FL ++ D+ + ++QRL G L G + E ++ LIG G+
Sbjct 450 TKITNIAFDENTKCPEWLNFLDQIFQGDQELVEYMQRLIGYSLTGEITEQIMVFLIGGGS 509
Query 220 NGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEM-DLRGVRWVAVSESEKDRRLAE 278
NGKS F I+ +G+Y A+ D F+ ++ ++ L G R+V+ ESE+ +L+E
Sbjct 510 NGKSTFINTIKDLMGEYGKQAKSDTFIKKKETGANNDIARLVGSRFVSAIESEEGEQLSE 569
Query 279 STIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVI 338
+ +K++TGG+ + AR +RQ++ EF P TNH P + G D IWRRIR+VPF + +
Sbjct 570 AFVKQITGGEPVLARFLRQEYFEFIPEFKVFFTTNHKPVIKGVDEGIWRRIRLVPFNLQL 629
Query 339 PADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFI 398
P +++D++L +L LE IL+WA+ G +Q+ GL+ P V+ AT +Y+E+ D + F+
Sbjct 630 PKEKRDKKLPEKLSLEMPGILNWAIEGCLKWQQSGLNDPAIVMKATGDYKEEMDILGPFM 689
Query 399 DDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWR 458
EC ++ L+E + W + G ++ +AF + L++ G R+ +
Sbjct 690 -FECCFKREDVQIEAKELYEVYANWCFRNGEHQLKNRAFYRILESQGLKRERGNRNKYFI 748
Query 459 AGIAV 463
G+ +
Sbjct 749 KGVTL 753
>gi|333998370|ref|YP_004530982.1| hypothetical protein TREPR_2052 [Treponema primitia ZAS-2]
gi|333740575|gb|AEF86065.1| conserved hypothetical protein [Treponema primitia ZAS-2]
Length=464
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/417 (36%), Positives = 215/417 (52%), Gaps = 10/417 (2%)
Query 60 WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVR------KCESASGVAGV 113
W WDG W DD LA +R D L ++ R + ES
Sbjct 50 WVVWDGTCWRIDDGALIHEKGLAMVRGIYDDLLKTQDYRERIEIEKYAMLSESVRRREAF 109
Query 114 LDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTE 173
+ A+ + + +LDS+P LLNV NGT+D+ R H D ITK Y
Sbjct 110 IKAASWIRELNISSEELDSNPWLLNVQNGTIDIKGGLFREHRQEDMITKTANVVYDPAAG 169
Query 174 SPLWQAFLTRVLPDEG-VRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYA 232
P W+ F+ ++ G + GF+Q + G+ + G V E + IL G GANGKS F + Y
Sbjct 170 CPAWKQFVREIMNCNGDIIGFLQAVTGMAITGDVSEQSMFILFGSGANGKSTFLNTLMYI 229
Query 233 LGDYACTAEPDLFMHRENAHPTGEM-DLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIR 291
LGDYA T D FM R N T ++ LRG R+V+ +E ++ RRL+E IK++TG D +
Sbjct 230 LGDYAITTTTDTFMKRNNEQATNDIARLRGARFVSTTELDQGRRLSEPLIKQITGNDKVT 289
Query 292 ARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARL 351
AR + ++ FTP+ + TNH P V G D IWRRI+++PF I AD QD+ L+ +L
Sbjct 290 ARFLYGEYFSFTPTFKIFMGTNHKPTVKGTDFGIWRRIKLIPFTTRIEADRQDKHLEEKL 349
Query 352 QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKA 411
+ EA IL+W + G + R GL P+AVLA T +Y+ + D I F+ + CV SP +
Sbjct 350 RAEASGILNWLLEGAYRWLREGLVVPEAVLAVTDDYKGEMDVIGIFLKERCV-QSPGVSI 408
Query 412 TTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADD 468
LF+A+Q W Q + + Q L G+ T A + R+ AGI +R ++
Sbjct 409 RIRELFKAYQDWCEQNNEKAMCERILSQRLKEMGFSRTRTA-EARYWAGIMLRAREE 464
>gi|327439461|dbj|BAK15826.1| predicted ATPase [Solibacillus silvestris StLB046]
Length=796
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/447 (33%), Positives = 236/447 (53%), Gaps = 11/447 (2%)
Query 24 IDDGG--KPTQVHR-GQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAV 80
+DDG KP + R + A R+A Y + V+ IGW WDG+RW D++ + +R
Sbjct 331 VDDGEEVKPKKKFRLNELGNAERIAYEYGHVIRFVSEIGWMLWDGKRWKYDNKLQIERIA 390
Query 81 LAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVA 140
LR+ L S ++ E+R R C + + LVP A + D L N +
Sbjct 391 NKVLRE-LEKSDDEMEVRW-ARSCGKRNIRMNSIKDLMPLVP--AEREEFDKHKFLFNCS 446
Query 141 NGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAG 199
NG LDL T KL+ H R++K+ + + + P W FL ++ DE + ++QRL G
Sbjct 447 NGILDLRTGKLQQHDRDLRLSKLANVEFDDNAKCPTWLNFLQQIFKGDEELIDYMQRLIG 506
Query 200 VGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEM-D 258
+ G + E + L+G G+NGKS F I+ +GDY + D F+ ++N ++
Sbjct 507 YSMTGDISEQGMYFLVGGGSNGKSTFINIIKAMMGDYGLQTKSDTFIKKKNDGANNDIAR 566
Query 259 LRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRV 318
L G R+V+ ESE+ +L ES +K +TGG+ I AR +RQ+F EFTP TNH P +
Sbjct 567 LVGSRFVSAVESEEGEKLQESLVKTITGGEPILARFLRQEFFEFTPEFKVFFTTNHKPII 626
Query 319 PGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPD 378
G D IWRR++++PF + + ++D++L+ +L LE IL+WA+ G +Q+ GL +P
Sbjct 627 GGVDEGIWRRVKIIPFTLNLAPHQRDKKLEEKLTLEMSGILNWAIEGCLKWQQSGLKEPK 686
Query 379 AVLAATSNYREDSDTIKRFIDDECVTS--SPVLKATTTHLFEAWQRWRVQEGVPEISRKA 436
V+ AT NY+E+ D + F+++ C + K L+ + W G IS ++
Sbjct 687 VVVDATGNYKEEMDILGPFLEERCYMNPKDTNTKIEAKELYNIYSNWCYAAGERSISNRS 746
Query 437 FGQSLDTHGYPVTDKARDGRWRAGIAV 463
F + L+T G+ + A + + GI +
Sbjct 747 FYRMLETKGFGKSKGAGNKMYLVGITI 773
>gi|291484307|dbj|BAI85382.1| hypothetical protein BSNT_02817 [Bacillus subtilis subsp. natto
BEST195]
Length=805
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/450 (33%), Positives = 225/450 (50%), Gaps = 21/450 (4%)
Query 30 PTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDR-------GEAKRAVLA 82
P H + A RL + + + + W W+G+ W D + + RA+
Sbjct 324 PPVFHLTELGNAERLVYYHGKNIRYCNELDWLIWNGKMWEEDSKRQIEALTAQTLRAIYG 383
Query 83 ELRQALSDSLNDKELRADVRKCESAS-GVAGVLDLAAALVPFAATVADLDSDPHLLNVAN 141
E + A D K+L +KCE + + +LD + A DLDS +L N N
Sbjct 384 EAK-ATEDGYRKKQLNDWAKKCERRNIRMNTILDTRPMV---AVRKQDLDSHKYLFNCEN 439
Query 142 GTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEG------VRGFVQ 195
G +DL T +L PH TKI AYQ D + P W+AFL + DE + F+Q
Sbjct 440 GVIDLKTGELLPHDRDFLFTKISSVAYQKDADCPNWKAFLESIFIDEQGQPNYEIINFMQ 499
Query 196 RLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTG 255
+ G L G E V+ L G G NGKS F ++ LGDY D F+ ++N
Sbjct 500 KAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQQLLGDYGRQTNSDTFIKKKNDSSIN 559
Query 256 E--MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITN 313
L G R+V+ ESE+ ++L+ES +K++TGG+ + AR +RQ++ EFTP TN
Sbjct 560 NDIARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTPEFKVFFTTN 619
Query 314 HLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG 373
H P V G D IWRRIR+VPF V IP ++ D++L +L E IL WAV G +Q+ G
Sbjct 620 HKPIVKGSDEGIWRRIRLVPFTVTIPKEKVDKKLPQKLAAEMPGILRWAVEGCLKWQKEG 679
Query 374 LSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEIS 433
L +P+ + AT YRED D + ++ + CV P K L++ ++ W + E+
Sbjct 680 LKEPEVIRKATEGYREDMDILGPYMSERCVV-HPSAKIEAKELYKDYKNWCYENDEIELK 738
Query 434 RKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
+AF + ++ G+ + A++ + GI +
Sbjct 739 NRAFYRQIEIRGFKKENGAKNKVFFYGIGL 768
>gi|228963014|ref|ZP_04124222.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228796668|gb|EEM44069.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length=791
Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 147/434 (34%), Positives = 232/434 (54%), Gaps = 17/434 (3%)
Query 41 AYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRAD 100
A R+A Y + V G GW++WDG+ W D +R LR+ L S +++E++
Sbjct 334 AERIATEYGHVIRFVNGSGWYTWDGKHWKEDRSRAVERITSKTLRKLLK-SEDEREVKWG 392
Query 101 VRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRI 160
R+CE + + LVP A D D+ +LLNV NG +DL T KL PH +
Sbjct 393 -RQCEKRAIRMNSIKDMIPLVP--AQREDFDTHQYLLNVENGVIDLKTGKLSPHDRDFML 449
Query 161 TKICRGAYQSDTESPLWQAFLTRVLPD-EG-----VRGFVQRLAGVGLLGTVREHVLAIL 214
TK+ ++ + P W+ FL + D EG + F+Q+ G L + E V+ L
Sbjct 450 TKMVNIEFKQGEDCPNWKLFLDSIFKDVEGNTDYELIEFIQKSIGYSLTSDISEQVMFFL 509
Query 215 IGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMD----LRGVRWVAVSES 270
G G NGKS F I+ LG+YA D F+ ++ H +G + L G R+V+ ES
Sbjct 510 YGSGRNGKSTFINTIKSLLGNYAKQTNSDTFIKKK--HDSGVNNDIARLAGARFVSAVES 567
Query 271 EKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIR 330
E+ ++L+E+ +K++TGG+ I AR +RQ+F EFTP+ TNH P + G D IWRR+R
Sbjct 568 EEGQQLSEALVKQITGGEPISARFLRQEFFEFTPAFKVFFTTNHKPIIKGMDEGIWRRVR 627
Query 331 VVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYRED 390
++PF V IP D+ DR+L +L +E IL+WA+ G +QR L +P A+ AT++Y+E+
Sbjct 628 MIPFIVTIPKDKVDRKLPEKLSMEMSGILNWAIEGCLKWQRESLGEPKAIQDATNHYKEE 687
Query 391 SDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTD 450
D ++ F+ D+C P K L+ + RW +EG + + F + L+
Sbjct 688 MDILEPFLLDKCFL-HPQAKMEAKELYSEYSRWCNEEGEIILRNRTFYRLLENKNIVKKR 746
Query 451 KARDGRWRAGIAVR 464
A++ + G+ ++
Sbjct 747 GAKNKVFLYGVGLQ 760
>gi|336237244|ref|YP_004589858.1| P4 family phage/plasmid primase [Geobacillus thermoglucosidasius
C56-YS93]
gi|335364161|gb|AEH49839.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
Length=832
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/436 (35%), Positives = 220/436 (51%), Gaps = 21/436 (4%)
Query 27 GGKPTQVHRGQARIAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELR 85
G K R A RL R+ D + + G W WDG+RW D + + +R
Sbjct 356 GTKKPSFMRTDLGNAERLVYRHGDNIRYCNVFGSWFIWDGQRWKEDKINQIQELAAETIR 415
Query 86 QALSDSLNDKELRADVRKC--------ESASGVAGVLDLAAALVPFAATVADLDSDPHLL 137
++ +++ +D+RK ES + ++ LA + VP +LD D L
Sbjct 416 NIYKEAQEERD--SDIRKTLTEHALRSESRGKIEAMISLAKSKVPVMP--EELDQDIWLF 471
Query 138 NVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEG------VR 191
N ANG +DL T +L PH +TKI Y E P W FL ++ DE +
Sbjct 472 NCANGIIDLRTGELLPHDRKKLMTKISPVIYDPKAECPTWIKFLEDIMSDEKGNPKYELI 531
Query 192 GFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENA 251
F+Q+ G L G E VL L G G NGKS F IR LGDY D F + +
Sbjct 532 EFLQKAVGYSLTGDTSEQVLFFLYGTGRNGKSTFVNTIREILGDYGKQTNADTFTVKRSD 591
Query 252 HPTGEMD-LRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLL 310
++ L+G R+V+ +ESE+ RLAES +K+LTGG+ I+AR + Q+ E+ P
Sbjct 592 RVNNDIAALKGARFVSATESEEGARLAESLVKQLTGGEAIQARFLYQENFEYIPQFKIFF 651
Query 311 ITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQ 370
TNH P + G D IWRRIR++PF V IP +++D L +L+ E IL WAV G +Q
Sbjct 652 TTNHKPVIKGSDEGIWRRIRLIPFTVTIPEEKKDTRLPEKLKAEMPGILRWAVEGCLKWQ 711
Query 371 RIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVP 430
R GL PD + AT Y+ + D++ FI D CV + + K + L+ A+Q+W + G
Sbjct 712 REGLGNPDEIKQATEGYKAEMDSLGAFIADCCVVNE-LAKCWGSDLYTAYQKWCDENGEY 770
Query 431 EISRKAFGQSLDTHGY 446
EI ++ F + L+ G+
Sbjct 771 EIGKRKFNKRLEERGF 786
>gi|333998245|ref|YP_004530857.1| hypothetical protein TREPR_2198 [Treponema primitia ZAS-2]
gi|333738290|gb|AEF83780.1| conserved hypothetical protein [Treponema primitia ZAS-2]
Length=464
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/449 (35%), Positives = 230/449 (52%), Gaps = 11/449 (2%)
Query 29 KPTQVHRGQARIAYRLAERY-QDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQA 87
K ++ A A RL + Y +D + A W WDG+ W DD L +R
Sbjct 18 KAGKIQFTDATNAERLLKIYGRDIRYNGAWKKWIVWDGKSWQIDDGARIHEKGLEMVRGI 77
Query 88 LSDSL--NDKELRADVRK----CESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVAN 141
D L +D R ++ K ES + A+ + + +LD +P LL+V N
Sbjct 78 YDDLLKTSDYRERIEIEKYAMLSESVRRREAFIKAASWIKELNISSEELDGNPWLLSVRN 137
Query 142 GTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEG-VRGFVQRLAGV 200
GT+D+ R H D ITKI Y + P W+ F+ ++ G + F+Q +AG+
Sbjct 138 GTIDIKGGTFREHRQEDMITKIANVDYDPAADCPAWKQFVREIMNFNGDIIRFLQAVAGM 197
Query 201 GLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEM-DL 259
+ G V E L IL G GANGKS F + Y LGDYA T + FM R N T ++ L
Sbjct 198 AITGDVSEQSLFILYGSGANGKSTFLNTLMYILGDYALTTTTETFMKRNNEQTTNDIARL 257
Query 260 RGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVP 319
RG R+V +E ++ RRL+E IK++TG D + AR + ++ +TP++ + TNH P +
Sbjct 258 RGARFVTTTELDQGRRLSEPLIKQITGNDKVTARFLYGEYFSYTPTYKIFMGTNHKPIIK 317
Query 320 GDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDA 379
G D IWRRI+++PF I AD+QD+ L+ +L+ EA IL+W + G + + GL P+A
Sbjct 318 GTDFGIWRRIKLIPFTTRIEADKQDKHLEEKLRAEAPGILNWLLEGAYRWLKEGLIVPEA 377
Query 380 VLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQ 439
VLAAT +Y+ + D I F+ EC SP + LF+A+Q W Q +S +
Sbjct 378 VLAATDDYKGEMDVIGNFL-KECCIQSPGVSIRIRELFKAYQEWCEQNNERAVSERLLSF 436
Query 440 SLDTHGYPVTDKARDGRWRAGIAVRGADD 468
L G+ A + R+ +GI +R D
Sbjct 437 RLKEMGFNRIRSA-EARYWSGIMLRAKTD 464
>gi|52081928|ref|YP_080719.1| phage-like protein [Bacillus licheniformis ATCC 14580]
gi|52787314|ref|YP_093143.1| hypothetical protein BLi03629 [Bacillus licheniformis ATCC 14580]
gi|52005139|gb|AAU25081.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580]
gi|52349816|gb|AAU42450.1| putative protein [Bacillus licheniformis ATCC 14580]
Length=805
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/449 (32%), Positives = 225/449 (51%), Gaps = 19/449 (4%)
Query 30 PTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELR---- 85
P H + A R+ + + + + W W+G+RW D + + + LR
Sbjct 326 PPAFHLTELGNAERIVYYHGKNIRYCNELDWLIWNGKRWEEDSKRKIEAITAKTLRALYG 385
Query 86 --QALSDSLNDKELRADVRKCESAS-GVAGVLDLAAALVPFAATVADLDSDPHLLNVANG 142
+A D K+L +KCE + + +LD+ + + +LDS +L N NG
Sbjct 386 EAKATEDKFRKKQLNDWAKKCERRNIRMNTILDVRPMV---SVRKQELDSHKYLFNCDNG 442
Query 143 TLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVL------PDEGVRGFVQR 196
+DL T +L PH TKI +YQ+D + P W+ FL + P+ + F+Q+
Sbjct 443 VIDLKTGELLPHDRDLLFTKISPISYQTDADCPNWKTFLESIFIDDQGTPNYEIIDFMQK 502
Query 197 LAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGE 256
G L G E V+ L G G NGKS F +++ GDY D F+ ++N
Sbjct 503 AIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKKNDSAINN 562
Query 257 --MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNH 314
L G R+V+ ESE+ ++L+ES +K++TGG+ + AR +RQ++ EFTP TNH
Sbjct 563 DIARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTPEFKVFFTTNH 622
Query 315 LPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGL 374
P V G D IWRRIR++PF V IP ++ D++L +L E IL WAV G +Q+ GL
Sbjct 623 KPIVKGSDEGIWRRIRLIPFTVTIPKEKVDKKLPQKLAAEMPGILRWAVEGCLKWQKEGL 682
Query 375 SQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISR 434
+P+A+ AT YRED D + F+++ C+ P K L++ ++ W + E+
Sbjct 683 GEPEAIKKATDGYREDMDILGPFMEERCI-QHPKAKVEAKELYKDYKDWCFENDEIELKN 741
Query 435 KAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
+AF + L+ G+ + + GI +
Sbjct 742 RAFYRQLEIRGFKKYRGNYNKNYFDGIGL 770
>gi|118579792|ref|YP_901042.1| P4 family phage/plasmid primase [Pelobacter propionicus DSM 2379]
gi|118502502|gb|ABK98984.1| phage/plasmid primase, P4 family [Pelobacter propionicus DSM
2379]
Length=524
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 164/444 (37%), Positives = 232/444 (53%), Gaps = 24/444 (5%)
Query 39 RIAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAK---RAVLAEL-RQALSDS-- 91
R++ R A ++D+L + + G W ++DGRRW D G R +L L R+AL +S
Sbjct 77 RLSERFAAMFRDQLRYWSESGKWLAFDGRRWTTDAPGGGFPFIRELLKNLYRKALYNSDF 136
Query 92 -LNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLK 150
+ +EL+A + K E+ A +L+ + A+LD P LL V NGT+DL +
Sbjct 137 LVRTEELKA-LLKLEAHPRQATLLEACKQRPELSVASAELDRHPMLLTVLNGTIDLESGA 195
Query 151 LRPHAPADRITKICRGAYQSDTESPLWQAFLTRVL-PDEGVRGFVQRLAGVGLLGTVREH 209
L PH PA+ +T++ Y E P + AFL R+ D+ + ++QR AG L G E
Sbjct 196 LLPHDPANFLTRLVFIEYDPTAECPKFLAFLDRIFASDKEIISYIQRFAGYCLTGLTGEQ 255
Query 210 VLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEM-DLRGVRWVAVS 268
VL G+GANGKSV R GDYA TA +L M R+ PT ++ LRG R V VS
Sbjct 256 VLLFFYGLGANGKSVLANVFRALCGDYASTAGAELLMVRDRRSPTNDLAGLRGSRLVVVS 315
Query 269 ESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRR 328
E + RLAE+ IK+LTG D I R + +F + P PLLI NH P++ G D IWRR
Sbjct 316 EFDDGERLAEAQIKQLTGEDAISCRFLYGEFFSYVPQFKPLLIGNHRPKIRGTDHGIWRR 375
Query 329 IRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYR 388
+V F VVIP +E+D L +L E IL+WAV G D+QR GL+ P++V AA + YR
Sbjct 376 FHLVSFNVVIPPEERDPHLQKKLLQELPGILAWAVRGCLDWQRQGLNPPESVKAAVTEYR 435
Query 389 EDSDTIKRFIDDEC----VTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTH 444
+ D ++I + C ++P A F + WR ++ FG+ L
Sbjct 436 QAEDVFGQWIAEYCHRDVGMTAPA--AALLRSFAEFSGWR------NVTTTKFGRMLTDA 487
Query 445 GYPVTDKARDGRWRA-GIAVRGAD 467
G+ RWR G+ AD
Sbjct 488 GFSKEKSHGTIRWRGLGLIASEAD 511
>gi|23015921|ref|ZP_00055685.1| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
Length=796
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 164/411 (40%), Positives = 217/411 (53%), Gaps = 14/411 (3%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLA-ELRQALSDSLNDKEL 97
+A + + + VAG G W W G RW E + +LA ++ + +
Sbjct 366 LAAAFTQAHAEDWRFVAGWGQWLLWTGCRW------ERESTLLAYDMARLICRDAASAAR 419
Query 98 RADVR-KCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAP 156
A +R K SAS VA V LA A AAT D DP LLN G +DLH+ +++PH
Sbjct 420 SAKLRSKLSSASTVAAVERLARADRSHAATTEVWDRDPWLLNTPGGVVDLHSGQIQPHNR 479
Query 157 ADRITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILI 215
A +TKI Q D P+W+ F+ V D+ ++ ++QR+AG L G EH L L
Sbjct 480 ALAMTKITMATPQGD--CPIWRQFVATVTGGDKDLQDYLQRVAGYCLTGVTSEHALFFLY 537
Query 216 GVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENA-HPTGEMDLRGVRWVAVSESEKDR 274
G GANGKSVF + LGDYA A D+FM + HPT LRG R V E+E+ R
Sbjct 538 GTGANGKSVFANTLTAILGDYATVAAMDMFMATTSERHPTDMAGLRGARIVTSIETEQGR 597
Query 275 RLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPF 334
R AES +K LTGGD I AR MRQDF EF P L+ NH P + D A+ RR+ +VPF
Sbjct 598 RWAESKLKALTGGDKITARFMRQDFFEFIPQFKLLVAGNHKPAIRNVDEAMRRRLHMVPF 657
Query 335 EVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTI 394
+ IP ++D++L RL E D IL+WAV G +QR GL P AV+AAT Y E D
Sbjct 658 TITIPPAKRDKQLSDRLLAERDGILAWAVEGCLAWQRTGLRPPAAVMAATDEYFESEDAF 717
Query 395 KRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHG 445
R++D+ C + TT+ LF W+ W G S K F ++L G
Sbjct 718 GRWLDERCERGNS-FSETTSALFGDWKNWTEANGEFTGSIKRFAENLVNRG 767
>gi|27383368|ref|NP_774897.1| hypothetical protein bll8257 [Bradyrhizobium japonicum USDA 110]
gi|27356543|dbj|BAC53522.1| bll8257 [Bradyrhizobium japonicum USDA 110]
Length=475
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 166/430 (39%), Positives = 221/430 (52%), Gaps = 14/430 (3%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+AY A Y+D L G W WDG W ++ G A V R +S L+ K L
Sbjct 42 VAYIFASTYRDTLRFCHSTGAWFEWDGSYWRRNEVGLAAHHVRVMARD-MSQGLSPKAL- 99
Query 99 ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPAD 158
A +RK ASGV G A FA T+ D DP LL +GT+DL T K+R PAD
Sbjct 100 ATIRKRSFASGVEG---FARNDPTFAVTIEAWDRDPFLLGTPDGTVDLRTGKMRAADPAD 156
Query 159 RITKICRGAYQSDTESPLWQAFLTRVLPDEG--VRGFVQRLAGVGLLGTVREHVLAILIG 216
ITK+ A + + PLW FL +G +R F+Q+ G L G REH L + G
Sbjct 157 GITKLTSTAPSAQADCPLWLRFLQDATGGDGEMIR-FLQQWCGYCLTGDTREHALVFVHG 215
Query 217 VGANGKSVFDKAIRYALGDYACTAEPDLFM-HRENAHPTGEMDLRGVRWVAVSESEKDRR 275
G NGKSVF Y L DYA TA D F+ R + HPT LRG R V+ SE+E+ R
Sbjct 216 DGGNGKSVFLNTTSYILHDYATTASMDTFVASRSDRHPTDLAMLRGARLVSASETEEGRA 275
Query 276 LAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFE 335
AES IK++TGGD I AR MRQDF F P ++ NH P + D A RR +VPF
Sbjct 276 WAESRIKQMTGGDAISARFMRQDFFTFQPQFKLFVVGNHQPALHSVDAAARRRFNIVPF- 334
Query 336 VVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIK 395
+ DREL+A+L+ EA +IL W V G D+QR GL +P +++ AT Y + DT
Sbjct 335 -TRKPTKPDRELEAKLRGEAPAILRWMVDGCRDWQRNGLVRPASIVEATETYFAEQDTFG 393
Query 396 RFIDDECVTS--SPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKAR 453
+++ D C + + LF++W + G S+K F QSL G+ + R
Sbjct 394 QWLKDACRVEPDNRSISDFVADLFKSWTDYAEASGERPGSQKGFVQSLTKSGFKKGQRVR 453
Query 454 DGRWRAGIAV 463
G+ G+ +
Sbjct 454 GGQLYIGLQL 463
>gi|22855035|ref|NP_690795.1| hypothetical protein phi105_42 [Bacillus phage phi105]
gi|4126648|dbj|BAA36668.1| unnamed protein product [Bacteriophage phi-105]
Length=806
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 149/475 (32%), Positives = 231/475 (49%), Gaps = 23/475 (4%)
Query 5 PYGTDYPDAPWID-RDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSW 63
PY + P D +ID P H + A R+ + + + + W W
Sbjct 301 PYEVYFSQPPTAQVEDTEEIID---TPPTFHLTELGNAERIVYYHGKNIRYCNELEWLIW 357
Query 64 DGRRWAADDR-------GEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDL 116
+G+ W D + + RA+ E QA D +K+L +KCE + +
Sbjct 358 NGKMWQEDSKRKIEAITAQTLRAIYGEA-QATEDGYREKQLNDWAKKCERRNIRMNTILD 416
Query 117 AAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPL 176
A +V + +LDS +L N NG +DL T L PH TKI AY+ D + P
Sbjct 417 ARPMV--SVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKISPVAYEKDADCPN 474
Query 177 WQAFLTRVLPDEG------VRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIR 230
W+AF+ + DE + F+Q+ G L G E V+ L G G NGKS F ++
Sbjct 475 WKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGNGRNGKSTFINTVQ 534
Query 231 YALGDYACTAEPDLFMHRENAHPTGE--MDLRGVRWVAVSESEKDRRLAESTIKRLTGGD 288
LGDY D F+ ++N L G R+V+ ESE+ ++L+ES +K++TGG+
Sbjct 535 QLLGDYGRQTNSDTFIKKKNDSSINNDIARLDGARFVSAVESEEGQQLSESLVKQITGGE 594
Query 289 TIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELD 348
+ AR +RQ++ EFTP TNH P V G D IWRRIR+VPF V IP ++ D++L
Sbjct 595 KMSARFLRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIPKEKVDKQLP 654
Query 349 ARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPV 408
+L E IL WAV G +Q+ GL++P+ + AT YRED D + ++++ C+ P
Sbjct 655 QKLAAEMPGILRWAVEGCLMWQKEGLTEPEDIRKATEGYREDMDILGPYMEERCIL-HPT 713
Query 409 LKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
K L++ ++ W + E+ +AF + L+ G+ + + GI +
Sbjct 714 TKVEAKELYKDYKDWCFENDEIELKNRAFYRQLEIRGFKKYRGNYNKNYFDGIGL 768
>gi|295002752|gb|ADF59173.1| gp60 [Bacillus phage phi105]
Length=806
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/475 (32%), Positives = 230/475 (49%), Gaps = 23/475 (4%)
Query 5 PYGTDYPDAPWID-RDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSW 63
PY + P D +ID P H + A R+ + + + + W W
Sbjct 301 PYEVYFSQPPTAQVEDTEEIID---TPPTFHLTELGNAERIVYYHGKNIRYCNELEWLIW 357
Query 64 DGRRWAADDR-------GEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDL 116
+G+ W D + + RA+ E QA D K+L +KCE + +
Sbjct 358 NGKMWQEDSKRKIEAITAQTLRAIYGEA-QATEDGYRKKQLNDWAKKCERRNIRMNTILD 416
Query 117 AAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPL 176
A +V + +LDS +L N NG +DL T L PH TKI AY+ D + P
Sbjct 417 ARPMV--SVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKISPVAYEKDADCPN 474
Query 177 WQAFLTRVLPDEG------VRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIR 230
W+AF+ + DE + F+Q+ G L G E V+ L G G NGKS F ++
Sbjct 475 WKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGNGRNGKSTFINTVQ 534
Query 231 YALGDYACTAEPDLFMHRENAHPTGE--MDLRGVRWVAVSESEKDRRLAESTIKRLTGGD 288
LGDY D F+ ++N L G R+V+ ESE+ ++L+ES +K++TGG+
Sbjct 535 QLLGDYGRQTNSDTFIKKKNDSSINNDIARLDGARFVSAVESEEGQQLSESLVKQITGGE 594
Query 289 TIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELD 348
+ AR +RQ++ EFTP TNH P V G D IWRRIR+VPF V IP ++ D++L
Sbjct 595 KMSARFLRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIPKEKVDKQLP 654
Query 349 ARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPV 408
+L E IL WAV G +Q+ GL++P+ + AT YRED D + ++++ C+ P
Sbjct 655 QKLAAEMPGILRWAVEGCLMWQKEGLTEPEDIRKATEGYREDMDILGPYMEERCIL-HPT 713
Query 409 LKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
K L++ ++ W + E+ +AF + L+ G+ + + GI +
Sbjct 714 TKVEAKELYKDYKDWCFENDEIELKNRAFYRQLEIRGFKKYRGNYNKNYFDGIGL 768
>gi|283853499|ref|ZP_06370741.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
gi|283571124|gb|EFC19142.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
Length=830
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/395 (37%), Positives = 214/395 (55%), Gaps = 9/395 (2%)
Query 60 WHSWDGRRWAADDRGEAKRAVLAELR------QALSDSLNDKELRADVRKCESASGVAGV 113
W +D RW D G + +A LR + L + ES + + +
Sbjct 401 WFLFDDVRWQEDKVGSIYQKAIATLRDLADQAKQLLPPKTAGYIIEHTLSSESRASLGNM 460
Query 114 LDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTE 173
L LA + AA D+DP LLN+ NGT+DL R HA D +TK+ AY +
Sbjct 461 LALAKSHPALAAVPEMFDADPWLLNLPNGTMDLKQQTFRSHAREDMLTKVAGVAYDPTST 520
Query 174 SPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYA 232
PLW AFL ++ ++ + GF+QR AG L+G V E L +L G GANGKSVF + +R+
Sbjct 521 CPLWLAFLVTIMAGNQALIGFLQRFAGYTLVGEVSEQSLILLYGTGANGKSVFLEILRFV 580
Query 233 LGDYACTAEPDLFMHRENAHPTGEMD-LRGVRWVAVSESEKDRRLAESTIKRLTGGDTIR 291
LG+YA A+ F + + ++ L G R+V ESE LAE+ IK++TGG+ I
Sbjct 581 LGEYAMQADFTTFTATKGQNVRNDIARLVGARFVTAVESEYGTPLAEAVIKQVTGGEPIV 640
Query 292 ARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARL 351
AR + ++F +F P T L +NH P + G D IWRRI++VPF V IP ++QD +L ++L
Sbjct 641 ARFLFKEFFQFYPQFTLWLASNHKPIIKGGDHGIWRRIKLVPFAVTIPPEQQDSDLPSKL 700
Query 352 QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKA 411
+ EA IL+W + G ++QR GL+ P V+AA S YR + D + F+D++CV K
Sbjct 701 KAEAPGILNWMLEGSREWQRQGLNPPAEVMAAVSEYRGEMDLLAEFLDEKCVLGLGE-KV 759
Query 412 TTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGY 446
L++A++ + EG + +K F L G+
Sbjct 760 KAKDLYKAYREFCEAEGEFVLGKKRFADLLLQRGF 794
>gi|229016445|ref|ZP_04173387.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
gi|228744853|gb|EEL94913.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
Length=795
Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/461 (32%), Positives = 227/461 (50%), Gaps = 22/461 (4%)
Query 19 DGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKR 78
D +ID+ K H + A R+A + D + + + W W+G+ W D + + +
Sbjct 315 DTEEIIDEAPK---FHLTELGNAERIAYYHGDNVRYCNELEWLIWNGKHWHEDSKRQIEA 371
Query 79 AVLAELR------QALSDSLNDKELRADVRKCESAS-GVAGVLDLAAALVPFAATVADLD 131
LR +A D K L +KCE S + +LD+ + + +LD
Sbjct 372 ITAKTLRAIYGEAKATEDKYQSKLLHDWAKKCERRSIRINSILDVKPMV---SVRKKELD 428
Query 132 SDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVL------ 185
S L N NG +DL T +L PH +TK+ Y + E P W++F+ +
Sbjct 429 SHSFLFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNAECPNWKSFMESIFKTPAGE 488
Query 186 PDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLF 245
PD + ++Q+ G L G +E V+ L G G NGKS F I+ LGDY D F
Sbjct 489 PDHELINYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQDLLGDYGRQTNSDTF 548
Query 246 MHRENAHPTGE--MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFT 303
+ + N L G R+V+ ESE+ ++L+E+ +K++TGG+ + AR +RQ++ EFT
Sbjct 549 LKKRNDSGINNDVARLDGARFVSAVESEEGQQLSEALVKQITGGEKMSARFLRQEYFEFT 608
Query 304 PSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAV 363
P TNH P V G D IWRRI ++PF V IP D+ D +L +L E +L WAV
Sbjct 609 PEFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIPKDKIDYDLPDKLAKEMPGVLRWAV 668
Query 364 AGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRW 423
G +Q GL P+AV AAT+ YRED D + FID+ C S + L+E + +W
Sbjct 669 EGCMKWQTEGLRAPEAVKAATAEYREDMDILGPFIDENCAVYSTA-RVEAKLLYENYTKW 727
Query 424 RVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVR 464
Q ++ +AF + L+ G+ +++ + G+ +
Sbjct 728 CYQNNEMDLKNRAFYRQLEIRGFKKEKGSKNKTFIHGMTLN 768
>gi|336234574|ref|YP_004587190.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
gi|335361429|gb|AEH47109.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
Length=765
Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 153/476 (33%), Positives = 232/476 (49%), Gaps = 27/476 (5%)
Query 5 PYGTDY---PDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIG-W 60
P GT+Y P P+ R G+P + + + A RL R + L + W
Sbjct 257 PSGTNYHSPPPMPFPARKE-------GEPRKFNLTEMGNAERLVARNGENLRYCVEFEEW 309
Query 61 HSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDK------ELRADVRKCESASGVAGVL 114
WDG+ W D + + +R + R+ +++ +++ EL + E +S +
Sbjct 310 LIWDGKTWVEDKKKQIERIAIRTFREMYAEAAHEENNDARNELLRWAKASEKSSVFLNSI 369
Query 115 DLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTES 174
A A++P + +L+ D LLN ANG +DL T +L PHA +TK +Y + +
Sbjct 370 ARAEAMLPISQ--EELNKDKFLLNCANGVVDLRTGELLPHAREYMMTKNTHVSYDPNAKC 427
Query 175 PLWQAFLTRVLPD-EGVR----GFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAI 229
P W AFL + D + V+ F+Q+ G L G + E V+ L G G NGKS F I
Sbjct 428 PTWMAFLESIFRDGDNVKYEIISFLQKAIGYALTGDISEQVVFFLWGTGRNGKSTFINTI 487
Query 230 RYALGDYACTAEPDLFMHRENAHPTGE--MDLRGVRWVAVSESEKDRRLAESTIKRLTGG 287
+ LGDYA + F + N L G R+V+ ESE +RL+ES IK+LTGG
Sbjct 488 KALLGDYAKQTNSNTFTAKMNDSGINNDIARLHGSRFVSAMESEDGQRLSESLIKQLTGG 547
Query 288 DTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDREL 347
+ I AR +R++F EF P TNH P + GDD IWRRIR+VPF IP ++ D+ L
Sbjct 548 EPITARFLRKEFFEFVPEFKIFFTTNHKPIIKGDDEGIWRRIRLVPFTYTIPKEQVDKHL 607
Query 348 DARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSP 407
+L E IL WAV G +Q+ GL +PD + AT Y+E+ D + F++D CV P
Sbjct 608 PEKLMNELPGILRWAVEGCLKWQKEGLGEPDEIKNATDEYKEEMDLLSNFLNDCCVI-HP 666
Query 408 VLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
K L++ + W + + ++ F L G+ + + GI +
Sbjct 667 DAKVQLNELYKEYIDWCEENSEIPMKKQKFSARLVLRGFEKRKSTGNKTFFFGIGL 722
>gi|17545558|ref|NP_518960.1| hypothetical protein RSc0839 [Ralstonia solanacearum GMI1000]
gi|17427851|emb|CAD14541.1| probable bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length=765
Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 162/431 (38%), Positives = 220/431 (52%), Gaps = 21/431 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDK-EL 97
+A RY D + + G W W G RW D + + L + + + + K E
Sbjct 331 LATAFTRRYGDDWRYCSLWGKWLVWTGVRWNPD-----QLLYITHLSRGICRAASFKAET 385
Query 98 RADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPA 157
K S+S +A V +A + AAT + D+D LN G +DL T +LR H
Sbjct 386 PRQKAKLASSSTIASVEKIARSDPKHAATADEWDADVWALNTPGGVVDLRTGQLRAHRRE 445
Query 158 DRITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAILIG 216
DR+TK+ + D P W+ FL+ V D ++ ++QR+AG L G+ +EH L L G
Sbjct 446 DRMTKVTTATPKGD--CPTWRQFLSEVTGGDVELQAYLQRMAGYALTGSTQEHALFFLYG 503
Query 217 VGANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEKDRR 275
GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+ RR
Sbjct 504 TGANGKSVFVNTLATILGDYAVNAAMDTFMETRADRHPTDMAGLRGARFVAAIETEQGRR 563
Query 276 LAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFE 335
AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++PF
Sbjct 564 WAESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFT 623
Query 336 VVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDSDTI 394
V +P +D+ L +L E D IL+WAV G D+QR+G L P VL AT Y E D +
Sbjct 624 VTVPPARRDKTLQQKLLAERDGILAWAVQGCLDWQRLGRLDPPQQVLDATEEYFEAEDAL 683
Query 395 KRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARD 454
R++D+ CV K T LF W++W G S++ F L T G
Sbjct 684 GRWLDERCVREINA-KTLTAELFNDWKQWADSAGEFVGSQRRFSDLLITRGVE------- 735
Query 455 GRWRAGIAVRG 465
+WR +RG
Sbjct 736 -KWRNTAGLRG 745
>gi|338810861|ref|ZP_08623099.1| hypothetical protein ALO_02226 [Acetonema longum DSM 6540]
gi|337276994|gb|EGO65393.1| hypothetical protein ALO_02226 [Acetonema longum DSM 6540]
Length=791
Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 164/446 (37%), Positives = 230/446 (52%), Gaps = 25/446 (5%)
Query 43 RLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRA----VLAELRQALSDSLNDKEL 97
R A ++D + +G W WDG RW ADD G A V+A + A + DK
Sbjct 343 RFAAMFKDAFRYCPTLGPWLVWDGCRWQADDTGAVMAAADDCVIATAQVAAAQDDPDKRG 402
Query 98 R--ADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHA 155
+ + K E+ + ++ A L AA D + L N NGTLDL T L PH
Sbjct 403 KWLSFAAKNEALAKRQAMVTGAQHLPALAARQDQFDQNSWLFNCLNGTLDLKTGALMPHN 462
Query 156 PADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRG--------FVQRLAGVGLLGTVR 207
P+D ITKI Y E P + FLT V PD+ G FVQRLAG L G
Sbjct 463 PSDYITKIAPVNYDPSAECPRFMQFLTEVFPDDMGLGIGNTELISFVQRLAGYALAGVTT 522
Query 208 EHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMD-LRGVRWVA 266
E +L I G GANGKS + +GDYA T D F+ ++ PT ++ LRG R+V
Sbjct 523 EQILCIAHGSGANGKSTLINLLADIMGDYATTTPTDAFLMQKGQKPTHDLAALRGARFVI 582
Query 267 VSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIW 326
SE+++ +RL E IK+LTGGD I AR + + ++P +L+TNH+PR +D A+W
Sbjct 583 ASETQEGKRLDEPLIKQLTGGDKIAARFLYKASFTYSPQFLIVLLTNHMPRAKAEDGALW 642
Query 327 RRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSN 386
RRIR++PFEV + +D L +L+ E D + W V G +Q+ GL +P+ V AT+
Sbjct 643 RRIRLLPFEVKFESVARDNNLAEKLKQEMDGVFRWMVEGCLRWQKEGLGEPEEVTRATAQ 702
Query 387 YREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGY 446
YRE++D++ +I + C + A TT L + +QR+ G I K F Q L +
Sbjct 703 YREENDSLGDWIAERCELDAKA-TARTTELRDDYQRY---NGWRRIEPKIFTQMLKARDF 758
Query 447 PVTDKARDGRWRA-GIAVR--GADDF 469
V K G +A GI ++ G DDF
Sbjct 759 KV--KISHGISKAYGIRLKPAGVDDF 782
>gi|134297351|ref|YP_001121086.1| hypothetical protein Bcep1808_3261 [Burkholderia vietnamiensis
G4]
gi|134140508|gb|ABO56251.1| phage/plasmid primase, P4 family [Burkholderia vietnamiensis
G4]
Length=775
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/418 (38%), Positives = 219/418 (53%), Gaps = 19/418 (4%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A + RY +VA G W W G+RW ++ A + R+A L+
Sbjct 341 LALTFSGRYAQDWRYVALWGKWVFWTGKRWQTEETLAAHHLMRQICREA--------ALK 392
Query 99 ADVR----KCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPH 154
AD K S+ VAG+ LA + AAT + D+DP LLN G ++L LR H
Sbjct 393 ADSHRVAAKLASSGTVAGLERLARSDRRHAATADEWDADPWLLNTPGGVVNLKNGVLRSH 452
Query 155 APADRITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAI 213
DR+TKI D P W+ F+ V D+ ++ ++ R+AG L G+ REH L
Sbjct 453 DRLDRLTKITTATPAGDC--PTWRQFIHEVTGGDQALQAYLARMAGYALTGSTREHALFF 510
Query 214 LIGVGANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEK 272
L G GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+
Sbjct 511 LYGTGANGKSVFVNTLATILGDYATNAPMDTFMETRTDRHPTDMASLRGARFVAAIETEQ 570
Query 273 DRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVV 332
RR AES +K LTGGD I AR MRQDF EF P ++ NH P + D A+ RR+ ++
Sbjct 571 GRRWAESKVKSLTGGDKISARFMRQDFFEFMPQFKLIVAGNHKPAIRNIDEAMKRRLHLI 630
Query 333 PFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDS 391
PF + +P + +D+ L +L E D IL+WAV G ++QR G L P VL AT Y E+
Sbjct 631 PFTITVPPERRDKHLQQKLLAERDGILAWAVQGCLEWQRQGRLDPPQQVLDATDEYFEEE 690
Query 392 DTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVT 449
D I F+D++C SPV + + +++ W+ + G + + Q L G+ T
Sbjct 691 DAIGEFLDEDC-QQSPVAREAISAIYQRWRERAERRGEYVGTSRWLTQQLINRGFART 747
>gi|196037390|ref|ZP_03104701.1| gp60 [Bacillus cereus NVH0597-99]
gi|196031632|gb|EDX70228.1| gp60 [Bacillus cereus NVH0597-99]
Length=795
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/465 (33%), Positives = 229/465 (50%), Gaps = 28/465 (6%)
Query 19 DGHVLIDDGGKPTQVHRGQA-RIAYRLAE--RYQDKLLHVAGIGWHSWDGRRWAADDRGE 75
D +ID+ K G A RIAY E RY ++L W W+G+ W D + +
Sbjct 315 DTEEIIDEAPKFHLTELGNAERIAYYHGENVRYCNEL------EWLIWNGKHWHEDSKRQ 368
Query 76 AKRAVLAELR------QALSDSLNDKELRADVRKCESAS-GVAGVLDLAAALVPFAATVA 128
+ LR +A D K L +KCE S + +LD+ + +
Sbjct 369 IEAITAKTLRAIYGEAKATEDKYQSKLLHDWAKKCERRSIRINSILDVRPMV---SVKKK 425
Query 129 DLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVL--- 185
+LD+ L N NG +DL T +L PH +TK+ Y + + P W+AF+ +
Sbjct 426 ELDAHNFLFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNADCPNWKAFMESIFKTP 485
Query 186 ---PDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEP 242
PD + ++Q+ G L G +E V+ L G G NGKS F I+ LGDY
Sbjct 486 AGEPDPELINYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQDLLGDYGRQTNS 545
Query 243 DLFMHRENAHPTGE--MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFV 300
D F+ + N L G R+V+ ESE+ ++L+E+ +K++TGG+ + AR +RQ++
Sbjct 546 DTFLKKRNDSGINNDVARLDGARFVSAVESEEGQQLSEALVKQITGGEKMSARFLRQEYF 605
Query 301 EFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILS 360
EFTP TNH P V G D IWRRI ++PF V IP D+ D +L +L E +L
Sbjct 606 EFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIPKDKIDYDLPDKLAKEMPGVLR 665
Query 361 WAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAW 420
WAV G +Q GL P+AV AAT+ YRED D + FID+ C T P + L+E +
Sbjct 666 WAVEGCMKWQAEGLRAPEAVKAATAEYREDMDILAPFIDENC-TVHPTERIEAKLLYENY 724
Query 421 QRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRG 465
+W Q ++ +AF + L+ G+ +++ + G+ +
Sbjct 725 TKWCYQNNELDLKNRAFYRQLEIRGFKKEKGSKNKTFIMGMTLNS 769
>gi|334196631|gb|AEG69816.1| bacteriophage-related protein [Ralstonia solanacearum Po82]
Length=769
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 161/435 (38%), Positives = 222/435 (52%), Gaps = 25/435 (5%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDK-EL 97
+A RY D + + G W W G RW D + + L + + + + K E
Sbjct 331 LATAFTRRYGDDWRYCSLWGKWLVWTGVRWNHD-----QLLYVTHLSRGICRAASFKAET 385
Query 98 RADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPA 157
K S+S +A V +A + AAT + D+D LN G +DL T LR H
Sbjct 386 PRQKTKLASSSTIASVEKIARSDPKHAATADEWDADVWALNTPGGVVDLRTGHLRAHRRE 445
Query 158 DRITKIC----RGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLA 212
DR+TK+ RG ++ P WQAF+ + + + ++QR+AG L G+ +EH L
Sbjct 446 DRMTKVTTATPRG--RNGEGCPSWQAFIDDITGGNTDLAAYLQRMAGYALTGSTQEHALF 503
Query 213 ILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESE 271
L G GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E
Sbjct 504 FLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETRADRHPTDMAGLRGARFVAAIETE 563
Query 272 KDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRV 331
+ RR AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ +
Sbjct 564 QGRRWAESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHL 623
Query 332 VPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYRED 390
+PF + +P + +D+ L +L E DSIL+WA+ G D+QR+G L P VL AT Y E
Sbjct 624 IPFTITVPPERRDKHLQQKLLAERDSILAWAIQGCLDWQRLGRLQPPQQVLDATEEYFEA 683
Query 391 SDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTD 450
D + R++D+ CV + K T LF W++W G S+K F L G
Sbjct 684 EDALGRWLDERCVREANA-KTLTAELFNDWKQWAEAAGEFAGSQKRFADLLLIRGVE--- 739
Query 451 KARDGRWRAGIAVRG 465
+WR +RG
Sbjct 740 -----KWRNTAGLRG 749
>gi|299067595|emb|CBJ38799.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum CMR15]
Length=765
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 160/434 (37%), Positives = 219/434 (51%), Gaps = 27/434 (6%)
Query 40 IAYRLAERYQDKLLHVAGIG-WHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELR 98
+A RY D + + G W W G RW D + + L + + + + +
Sbjct 331 LATAFTRRYGDDWRYCSLWGKWLVWTGVRWNPD-----QLLYVTHLSRGICRAAS---FK 382
Query 99 ADV----RKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPH 154
AD K S+S +A V ++ + AAT + D+D LN G +DL T +LR H
Sbjct 383 ADTPRQKAKLASSSTIASVEKISRSDPKHAATADEWDADVWALNTPGGVVDLRTGQLRAH 442
Query 155 APADRITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVLAI 213
DR+TKI D P W+ FL V D ++ ++QR+AG L G+ +EH L
Sbjct 443 RREDRMTKITTATPGGD--CPTWRQFLAEVTGGDAELQAYLQRMAGYALTGSTQEHALFF 500
Query 214 LIGVGANGKSVFDKAIRYALGDYACTAEPDLFMH-RENAHPTGEMDLRGVRWVAVSESEK 272
L G GANGKSVF + LGDYA A D FM R + HPT LRG R+VA E+E+
Sbjct 501 LYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETRADRHPTDMAGLRGARFVAAIETEQ 560
Query 273 DRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVV 332
RR AES +K LTGGD I AR MRQDF EF P + NH P + D A+ RR+ ++
Sbjct 561 GRRWAESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLI 620
Query 333 PFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIG-LSQPDAVLAATSNYREDS 391
PF + +P + +D+ L +L E IL+WAV G D+QR+G L P VL AT Y E
Sbjct 621 PFTITVPPERRDKHLQQKLLAERGGILAWAVQGCLDWQRLGRLQPPQQVLDATEEYFEAE 680
Query 392 DTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDK 451
D + R++D+ CV + K T LF W++W G S+K F L G
Sbjct 681 DALGRWLDERCVREANA-KTLTAELFNDWKQWAEAAGEFAGSQKRFADLLLIRGVE---- 735
Query 452 ARDGRWRAGIAVRG 465
+WR +RG
Sbjct 736 ----KWRNTAGLRG 745
>gi|212638627|ref|YP_002315147.1| phage associated DNA primase [Anoxybacillus flavithermus WK1]
gi|212560107|gb|ACJ33162.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1]
Length=765
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/474 (32%), Positives = 228/474 (49%), Gaps = 23/474 (4%)
Query 5 PYGTDYPD-APWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIG-WHS 62
P GT+Y +P I + G+ + + + A RL R L + W
Sbjct 257 PSGTNYSSPSPMISPE-----RKEGEQKKFNLTEMGNAERLVARNGQNLRYCVEFEEWLI 311
Query 63 WDGRRWAADDRGEAKRAVLAELRQALSDSLNDK------ELRADVRKCESASGVAGVLDL 116
WDG+ W D + + +R + R+ +++ ++ EL + E +S +
Sbjct 312 WDGKTWVEDKKKKIERIAIRTFREMYAEAAKEENNDARNELLKWAKASEKSSVFLNSIAR 371
Query 117 AAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPL 176
A A++P + +L+ D LLN ANG +DL T +L PHA +TK Y + + P
Sbjct 372 AEAMLPISQ--EELNKDKFLLNCANGVVDLRTGELLPHAREYMMTKNTHIPYDPNAKCPT 429
Query 177 WQAFLTRVLPDEG-----VRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRY 231
W AFL + D G + F+Q+ G L G + E V+ L G G NGKS F ++
Sbjct 430 WIAFLESIFRDGGDVKQDIINFLQKAIGYTLTGDISEQVVFFLWGTGRNGKSTFINTVKA 489
Query 232 ALGDYACTAEPDLFMHRENAHPTGE--MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDT 289
LGDYA + F + N L G R+V+ ESE +RL+ES IK+LTGG+
Sbjct 490 LLGDYAKQTNSNTFTAKMNDSGINNDIARLHGSRFVSAVESEDGQRLSESLIKQLTGGEP 549
Query 290 IRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDA 349
I AR +R++F EF P TNH P + GDD IWRRIR+VPF IP ++ D+ L
Sbjct 550 ITARFLRKEFFEFVPEFKIFFTTNHKPIIKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPE 609
Query 350 RLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVL 409
+L E IL WAV G +Q+ GL +PD + ATS Y+++ D + F++D CV P
Sbjct 610 KLMNELPGILRWAVEGCLKWQKEGLGEPDEIKNATSEYKDEMDLLSNFLNDCCVI-HPGA 668
Query 410 KATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAV 463
K L++ + W + + ++ F L G+ + + GI +
Sbjct 669 KVQLNELYKEYIDWCEENSEIAMKKQKFSARLVLRGFEKRKSTGNKTFFFGIGL 722
>gi|229008912|ref|ZP_04166266.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
gi|228752349|gb|EEM02023.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
Length=796
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/447 (33%), Positives = 219/447 (49%), Gaps = 19/447 (4%)
Query 32 QVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELR------ 85
+ H + A R+A + + + + + W W+G+ W D + + + LR
Sbjct 327 KFHLTELGNAERIAYYHGENIRYCNELEWLIWNGKHWHEDSKRQIEAITAKTLRALYGEA 386
Query 86 QALSDSLNDKELRADVRKCESAS-GVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTL 144
+A D K L +KCE S + +LD+ + + +LDS L N NG +
Sbjct 387 KATEDKYQAKLLHDWAKKCERRSIRINSILDVRPMV---SVKKKELDSHSFLFNCDNGVI 443
Query 145 DLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLP------DEGVRGFVQRLA 198
DL T +L PH +TK+ Y + E P W+AFL + D + ++Q+
Sbjct 444 DLKTGELLPHDRDLLLTKLSPIKYDKNAECPNWKAFLKSIFKTPAGEADHELIHYLQKAI 503
Query 199 GVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGE-- 256
G L G +E V+ L G G NGKS F I+ LGDY D F+ + N
Sbjct 504 GYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQDLLGDYGRQTNSDTFLKKRNDSGINNDV 563
Query 257 MDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLP 316
L G R+V+ ESE+ ++L+E+ +K++TGG+ + AR +RQ++ EFTP TNH P
Sbjct 564 ARLDGARFVSAVESEEGQQLSEALVKQITGGEKMSARFLRQEYFEFTPEFKVFFTTNHKP 623
Query 317 RVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQ 376
V G D IWRRI ++PF V I + D +L +L E IL WAV G +Q GL
Sbjct 624 IVKGSDEGIWRRIMLIPFTVTIKKENIDYDLPDKLAKEMPGILRWAVEGCMKWQAEGLRA 683
Query 377 PDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKA 436
P+AV AAT+ YRED D + FID+ C +S V + L+E + +W Q E+ +A
Sbjct 684 PEAVKAATAEYREDMDILAPFIDENCTVNSSV-RIEAKSLYENYTKWCYQNNELELKNRA 742
Query 437 FGQSLDTHGYPVTDKARDGRWRAGIAV 463
F + L+ G+ + + GI +
Sbjct 743 FYRQLEVRGFKKEKGTGNKNFILGITL 769
>gi|304360923|ref|YP_003857043.1| gp71 [Mycobacterium phage CrimD]
gi|302858672|gb|ADL71417.1| gp71 [Mycobacterium phage CrimD]
Length=872
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/433 (37%), Positives = 223/433 (52%), Gaps = 8/433 (1%)
Query 44 LAERYQDKLLHVAGIG-WHSWDGRRWA-ADDRGEAKRAVLAELRQALSDSLNDKELRADV 101
L E + KL + G W SW G RW D+GEA A + D + K++
Sbjct 432 LVEAWGAKLRYCPDTGKWLSWKGTRWEHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQHR 491
Query 102 RKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRIT 161
+ S G+ ++ LA +ADLD++P+ LN +G +DL T L PH+P T
Sbjct 492 MRSLSRKGLENMVALAKCSPDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSPDGWHT 551
Query 162 KICRGAYQSDTESPLWQAFLTRVLPDE-GVRGFVQRLAGVGLLGTVREHVLAILIGVGAN 220
KI Y +P WQ FL D+ + G+VQRLAG+ +G V HVL L G G+N
Sbjct 552 KITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSN 611
Query 221 GKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAEST 280
GKSV + LGDYA TA + + + H T L G R V SE + + E+
Sbjct 612 GKSVLMDVLANVLGDYAITAPANFLLAGRDRHETEIARLHGARMVVCSEINAESKFDEAK 671
Query 281 IKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPA 340
+K LTGGD + R MRQD+ +FTPSHT L+ NH P+V T+ WRR+R++PF +P
Sbjct 672 VKVLTGGDILSGRYMRQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPP 731
Query 341 DEQDRELDARL-QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFID 399
++++ L A L + E +IL+W VAG GL +P +VLAAT Y E D + RFI
Sbjct 732 EQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLREPGSVLAATKEYSEQEDALGRFIS 791
Query 400 DEC-VTSSPVLKATTTHLFEAWQRWRVQEGV-PEISRKAFGQSLDTHGYPVTDKARDG-R 456
+ C +T A + +A+QRW + G +S+ G+ L + V A G R
Sbjct 792 ECCELTPGASGGAKPALVLKAYQRWAMSNGEDAMVSQIKLGRELSAR-FGVRSVATHGQR 850
Query 457 WRAGIAVRGADDF 469
AG+A++ + D
Sbjct 851 VYAGLALQASWDL 863
>gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ]
gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ]
Length=695
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/418 (34%), Positives = 223/418 (54%), Gaps = 14/418 (3%)
Query 39 RIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAK---RAVLAELRQALSDSLNDK 95
R++ A +++D+L + W +DG+RW ++ G A + ++AE+R S ND
Sbjct 261 RVSSYFAAKFKDRLRFNPSLDWLVFDGQRWNSNTPGGAYPFLKELIAEIRAKASQIENDA 320
Query 96 ELRADVR---KCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLR 152
E + ++ K E+ + A V+ A + F+ + LD DP LLNV NGTLDL T L+
Sbjct 321 ERMSMLKESVKLEAHNRQAMVISAAQKIPDFSVSSCQLDRDPMLLNVLNGTLDLRTGSLK 380
Query 153 PHAPADRITKICRGAYQSDTESPLWQAFLTRVLP-DEGVRGFVQRLAGVGLLGTVREHVL 211
H+PAD IT++ Y +P+++AFL++++ + + F++R AG L G E VL
Sbjct 381 QHSPADFITRLVPIEYNHTATAPVFEAFLSKIMAGNTALTAFIKRWAGYCLTGDTSEQVL 440
Query 212 AILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHREN---AHPTGEMDLRGVRWVAVS 268
L G G NGKS F ++ LGD+A T DL +H+ N + + +RG R V ++
Sbjct 441 LFLYGTGRNGKSTFVNILKKLLGDFAATGAGDLILHKGNGDLSTLSALAAMRGARLVNLN 500
Query 269 ESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRR 328
E RL E+ +K LTGGD + R + ++F E+ P+ LL NH P + G D IWRR
Sbjct 501 ELNDGDRLNEAAVKNLTGGDLLACRFLHKEFFEYKPAFKLLLFGNHKPSIRGTDHGIWRR 560
Query 329 IRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYR 388
+ ++ F V I E D L+ +L+ E IL+WAV G ++QR LS P V A + YR
Sbjct 561 LHLLKFGVTISDAECDPHLEQKLEKELPGILAWAVQGCLEWQREKLSPPAEVKEAVAEYR 620
Query 389 EDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGY 446
D +K ++DD C +P + L ++ ++ +G +S + F L G+
Sbjct 621 NSEDALKGWLDD-CCQLAPQFRTPAGLLLNSFIQYSNWKG---LSARRFSSMLTVAGF 674
>gi|304360825|ref|YP_003856946.1| gp68 [Mycobacterium phage Angelica]
gi|302858409|gb|ADL71157.1| gp68 [Mycobacterium phage Angelica]
Length=872
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 155/433 (36%), Positives = 224/433 (52%), Gaps = 8/433 (1%)
Query 44 LAERYQDKLLHVAGIG-WHSWDGRRWA-ADDRGEAKRAVLAELRQALSDSLNDKELRADV 101
L E + +L + G W SW G RW D+GEA A + D + K++
Sbjct 432 LVEAWGARLRYCPDTGKWLSWKGTRWEHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQHR 491
Query 102 RKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRIT 161
+ S G+ ++ LA +ADLD++P+ LN +G +DL T L PH+P T
Sbjct 492 MRSLSRKGLENMVALAKCSPDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSPDGWHT 551
Query 162 KICRGAYQSDTESPLWQAFLTRVLPDE-GVRGFVQRLAGVGLLGTVREHVLAILIGVGAN 220
KI Y +P WQ FL D+ + G+VQRLAG+ +G V HVL L G G+N
Sbjct 552 KITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSN 611
Query 221 GKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAEST 280
GKSV + LGDYA TA + + + H T L G R V SE + + E+
Sbjct 612 GKSVLMDVLANVLGDYAITAPANFLLAGRDRHETEIARLHGARMVVCSEINAESKFDEAK 671
Query 281 IKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPA 340
+K LTGGD + R MRQD+ +FTPSHT L+ NH P+V T+ WRR+R++PF +P
Sbjct 672 VKVLTGGDILSGRYMRQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPP 731
Query 341 DEQDRELDARL-QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFID 399
++++ L A L + E +IL+W VAG GL +P +VLAAT Y E D + RFI
Sbjct 732 EQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLREPGSVLAATKEYSEQEDALGRFIS 791
Query 400 DEC-VTSSPVLKATTTHLFEAWQRWRVQEGV-PEISRKAFGQSLDTHGYPVTDKARDG-R 456
+ C +T A + +A+QRW + G +S+ G+ L + V A +G R
Sbjct 792 ECCELTPGASGGAKPALVLKAYQRWAMSNGEDAMVSQIKLGRELSAR-FGVRSVAINGAR 850
Query 457 WRAGIAVRGADDF 469
AG+A++ + D
Sbjct 851 VYAGLALQASWDL 863
>gi|339753800|gb|AEJ93820.1| gp69 [Mycobacterium phage JAWS]
Length=872
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/427 (36%), Positives = 219/427 (52%), Gaps = 6/427 (1%)
Query 44 LAERYQDKLLHVAGIG-WHSWDGRRWA-ADDRGEAKRAVLAELRQALSDSLNDKELRADV 101
L E + +L + G W SW G RW D+GEA A + D + K++
Sbjct 432 LVEAWGARLRYCPDTGKWLSWKGTRWEHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQHR 491
Query 102 RKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRIT 161
+ S G+ ++ LA +ADLD++P+ LN +G +DL T L PH+P T
Sbjct 492 MRSLSRKGLENMVALAKCSPDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSPDGWHT 551
Query 162 KICRGAYQSDTESPLWQAFLTRVLPDE-GVRGFVQRLAGVGLLGTVREHVLAILIGVGAN 220
KI Y +P WQ FL D+ + G+VQRLAG+ +G V HVL L G G+N
Sbjct 552 KITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSN 611
Query 221 GKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAEST 280
GKSV + LGDYA TA + + + H T L G R V SE + + E+
Sbjct 612 GKSVLMDVLANVLGDYAITAPANFLLAGRDRHETEIARLHGARMVVCSEINAESKFDEAK 671
Query 281 IKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPA 340
+K LTGGD + R MRQD+ +FTPSHT L+ NH P+V T+ WRR+R++PF +P
Sbjct 672 VKVLTGGDILSGRYMRQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPP 731
Query 341 DEQDRELDARL-QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFID 399
++++ L A L + E +IL+W VAG GL +P +VLAAT Y E D + RFI
Sbjct 732 EQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLREPGSVLAATKEYSEQEDALGRFIS 791
Query 400 DEC-VTSSPVLKATTTHLFEAWQRWRVQEGV-PEISRKAFGQSLDTHGYPVTDKARDGRW 457
+ C +T A + +A+QRW + G +S+ G+ L + + R
Sbjct 792 ECCELTPGASGGAKPALVLKAYQRWAMSNGEDAMVSQVKLGRELSARFGVRSVVSNSVRT 851
Query 458 RAGIAVR 464
AG+A+R
Sbjct 852 YAGLALR 858
>gi|339755835|gb|AEJ95838.1| gp69 [Mycobacterium phage Adephagia]
Length=872
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/433 (36%), Positives = 223/433 (52%), Gaps = 8/433 (1%)
Query 44 LAERYQDKLLHVAGIG-WHSWDGRRWA-ADDRGEAKRAVLAELRQALSDSLNDKELRADV 101
L E + +L + G W SW G RW D+GEA A + D + K++
Sbjct 432 LVEAWGARLRYCPDTGKWLSWKGTRWEHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQHR 491
Query 102 RKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRIT 161
+ S G+ ++ LA +ADLD++P+ LN +G +DL T L PH+P T
Sbjct 492 MRSLSRKGLENMVALAKCSPDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSPDGWHT 551
Query 162 KICRGAYQSDTESPLWQAFLTRVLPDE-GVRGFVQRLAGVGLLGTVREHVLAILIGVGAN 220
KI Y +P WQ FL D+ + G+VQRLAG+ +G V HVL L G G+N
Sbjct 552 KITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSN 611
Query 221 GKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAEST 280
GKSV + LGDYA TA + + + H T L G R V SE + + E+
Sbjct 612 GKSVLMDVLANVLGDYAITAPANFLLAGRDRHETEIARLHGARMVVCSEINAESKFDEAK 671
Query 281 IKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPA 340
+K LTGGD + R MRQD+ +FTPSHT L+ NH P+V T+ WRR+R++PF +P
Sbjct 672 VKVLTGGDILSGRYMRQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPP 731
Query 341 DEQDRELDARL-QLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFID 399
++++ L A L + E +IL+W VAG GL +P +VLAAT Y E D + RFI
Sbjct 732 EQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLREPGSVLAATKEYSEQEDALGRFIS 791
Query 400 DEC-VTSSPVLKATTTHLFEAWQRWRVQEGV-PEISRKAFGQSLDTHGYPVTDKARDG-R 456
+ C +T A + +A+QRW + G +S+ G+ L + V A G R
Sbjct 792 ECCELTPGASGGAKPALVLKAYQRWAMSNGEDAMVSQIKLGRELSAR-FGVRSVATHGQR 850
Query 457 WRAGIAVRGADDF 469
AG+A++ + D
Sbjct 851 VYAGLALQASWDL 863
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 997788107792
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40