BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1583c
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608721|ref|NP_216099.1| phiRv1 phage protein [Mycobacterium... 255 2e-66
gi|31792769|ref|NP_855262.1| phiRv1 phage protein [Mycobacterium... 253 8e-66
gi|308378979|ref|ZP_07668875.1| LOW QUALITY PROTEIN: hypothetica... 251 2e-65
gi|289751281|ref|ZP_06510659.1| phiRv1 phage protein [Mycobacter... 216 1e-54
gi|15609793|ref|NP_217172.1| phiRv2 prophage protein [Mycobacter... 200 6e-50
gi|323717854|gb|EGB27044.1| phiRv1 phage protein [Mycobacterium ... 175 2e-42
gi|307080586|ref|ZP_07489756.1| hypothetical protein TMKG_04052 ... 172 2e-41
gi|289570830|ref|ZP_06451057.1| conserved hypothetical protein [... 171 2e-41
gi|307085352|ref|ZP_07494465.1| hypothetical protein TMLG_04094 ... 162 1e-38
gi|167967172|ref|ZP_02549449.1| hypothetical phiRv2 prophage pro... 140 9e-32
gi|307085353|ref|ZP_07494466.1| hypothetical protein TMLG_04095 ... 102 3e-20
gi|289751282|ref|ZP_06510660.1| phiRv1 phage protein [Mycobacter... 98.2 4e-19
gi|289753670|ref|ZP_06513048.1| LOW QUALITY PROTEIN: phiRv1 phag... 96.3 1e-18
gi|315442141|ref|YP_004075020.1| hypothetical protein Mspyr1_047... 92.4 2e-17
gi|340628613|ref|YP_004747065.1| hypothetical protein MCAN_36611... 89.7 1e-16
gi|120402459|ref|YP_952288.1| hypothetical protein Mvan_1449 [My... 88.6 3e-16
gi|41408864|ref|NP_961700.1| hypothetical protein MAP2766c [Myco... 84.0 8e-15
gi|308379736|ref|ZP_07669038.1| hypothetical protein TMKG_04040 ... 76.3 1e-12
gi|342860959|ref|ZP_08717608.1| phiRv2 phage protein [Mycobacter... 68.9 2e-10
gi|343926143|ref|ZP_08765652.1| hypothetical protein GOALK_056_0... 50.8 7e-05
gi|146339310|ref|YP_001204358.1| putative transcription repair c... 38.1 0.48
gi|296141558|ref|YP_003648801.1| hypothetical protein Tpau_3889 ... 37.7 0.56
gi|54027750|ref|YP_121991.1| hypothetical protein pnf11020 [Noca... 35.8 2.1
gi|197105300|ref|YP_002130677.1| peptidase, M23/M37 family [Phen... 35.8 2.2
gi|340369294|ref|XP_003383183.1| PREDICTED: CWF19-like protein 2... 35.4 3.0
gi|163738431|ref|ZP_02145846.1| carbamoyl-phosphate synthase sma... 35.0 3.7
gi|283778896|ref|YP_003369651.1| hypothetical protein Psta_1108 ... 33.5 9.5
>gi|15608721|ref|NP_216099.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|15843065|ref|NP_338102.1| hypothetical protein MT3573.2 [Mycobacterium tuberculosis CDC1551]
gi|148661378|ref|YP_001282901.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
27 more sequence titles
Length=132
Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
Query 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR
Sbjct 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
Query 121 RRGVYIPRAGVA 132
RRGVYIPRAGVA
Sbjct 121 RRGVYIPRAGVA 132
>gi|31792769|ref|NP_855262.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|31618359|emb|CAD96277.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
Length=132
Score = 253 bits (645), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 131/132 (99%), Positives = 131/132 (99%), Gaps = 0/132 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTAGAGGSPPTRRC ATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM
Sbjct 1 MTAGAGGSPPTRRCSATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
Query 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR
Sbjct 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
Query 121 RRGVYIPRAGVA 132
RRGVYIPRAGVA
Sbjct 121 RRGVYIPRAGVA 132
>gi|308378979|ref|ZP_07668875.1| LOW QUALITY PROTEIN: hypothetical protein TMJG_03013 [Mycobacterium
tuberculosis SUMu010]
gi|308358731|gb|EFP47582.1| LOW QUALITY PROTEIN: hypothetical protein TMJG_03013 [Mycobacterium
tuberculosis SUMu010]
Length=133
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
Query 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR
Sbjct 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
Query 121 RRGVYIPRAG 130
RRGVYIPRAG
Sbjct 121 RRGVYIPRAG 130
>gi|289751281|ref|ZP_06510659.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289691868|gb|EFD59297.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=112
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 21 APATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAI 80
APATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAI
Sbjct 1 APATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAI 60
Query 81 CDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA 132
CDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA
Sbjct 61 CDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA 112
>gi|15609793|ref|NP_217172.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
gi|15842196|ref|NP_337233.1| hypothetical protein MT2733 [Mycobacterium tuberculosis CDC1551]
gi|148662498|ref|YP_001284021.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
39 more sequence titles
Length=130
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/131 (82%), Positives = 111/131 (85%), Gaps = 1/131 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTA GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPM
Sbjct 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM 59
Query 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
AGTPAW LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct 60 AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR 119
Query 121 RRGVYIPRAGV 131
RR YI R V
Sbjct 120 RRDAYIRRVVV 130
>gi|323717854|gb|EGB27044.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=89
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/89 (99%), Positives = 89/89 (100%), Gaps = 0/89 (0%)
Query 44 VHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASR 103
+HEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASR
Sbjct 1 MHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASR 60
Query 104 DVSAAADWPGIAREIVRRRGVYIPRAGVA 132
DVSAAADWPGIAREIVRRRGVYIPRAGVA
Sbjct 61 DVSAAADWPGIAREIVRRRGVYIPRAGVA 89
>gi|307080586|ref|ZP_07489756.1| hypothetical protein TMKG_04052 [Mycobacterium tuberculosis SUMu011]
gi|308361665|gb|EFP50516.1| hypothetical protein TMKG_04052 [Mycobacterium tuberculosis SUMu011]
Length=124
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/115 (80%), Positives = 95/115 (83%), Gaps = 0/115 (0%)
Query 17 TEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRK 76
T RAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPMAGTPAW LDD DP K
Sbjct 10 TRTRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK 69
Query 77 WAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGV 131
WAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI RRR YI R V
Sbjct 70 WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 124
>gi|289570830|ref|ZP_06451057.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544584|gb|EFD48232.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=109
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/110 (84%), Positives = 94/110 (86%), Gaps = 1/110 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTA GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPM
Sbjct 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM 59
Query 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAAD 110
AGTPAW LDD DP KWAAICDAARHWALRVETCQ A A+ASRDV A D
Sbjct 60 AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVYVAGD 109
>gi|307085352|ref|ZP_07494465.1| hypothetical protein TMLG_04094 [Mycobacterium tuberculosis SUMu012]
gi|308365110|gb|EFP53961.1| hypothetical protein TMLG_04094 [Mycobacterium tuberculosis SUMu012]
Length=107
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/107 (80%), Positives = 89/107 (84%), Gaps = 0/107 (0%)
Query 25 VATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAA 84
VATPSS DPTASRAVSWWSVHE+VAP L AA WPMAGTPAW LDD DP KWAAICDAA
Sbjct 1 VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA 60
Query 85 RHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGV 131
RHWALRVETCQ A A+ASRDVSAAADWP ++REI RRR YI R V
Sbjct 61 RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 107
>gi|167967172|ref|ZP_02549449.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
gi|254551710|ref|ZP_05142157.1| phiRv2 phage protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|308232203|ref|ZP_07664026.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu001]
18 more sequence titles
Length=93
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/93 (77%), Positives = 76/93 (82%), Gaps = 0/93 (0%)
Query 39 VSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAM 98
+SWWSVHE+VAP L AA WPMAGTPAW LDD DP KWAAICDAARHWALRVETCQ A
Sbjct 1 MSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS 60
Query 99 AQASRDVSAAADWPGIAREIVRRRGVYIPRAGV 131
A+ASRDVSAAADWP ++REI RRR YI R V
Sbjct 61 AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 93
>gi|307085353|ref|ZP_07494466.1| hypothetical protein TMLG_04095 [Mycobacterium tuberculosis SUMu012]
gi|308365100|gb|EFP53951.1| hypothetical protein TMLG_04095 [Mycobacterium tuberculosis SUMu012]
Length=67
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/63 (88%), Positives = 56/63 (89%), Gaps = 1/63 (1%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTA GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPM
Sbjct 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM 59
Query 61 AGT 63
AGT
Sbjct 60 AGT 62
>gi|289751282|ref|ZP_06510660.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289691869|gb|EFD59298.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=65
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/61 (82%), Positives = 55/61 (91%), Gaps = 0/61 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
MTAGAGGSPPTRRCPATEDRAPATVAT SSADPTASRAVS WSV +HV+PVLD AG+ +
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATSSSADPTASRAVSRWSVQKHVSPVLDVAGTCNI 60
Query 61 A 61
+
Sbjct 61 S 61
>gi|289753670|ref|ZP_06513048.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis
EAS054]
gi|289694257|gb|EFD61686.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis
EAS054]
Length=73
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/68 (77%), Positives = 55/68 (81%), Gaps = 1/68 (1%)
Query 66 WRQLDDADPRKWAA-ICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGV 124
WRQL+ + + RHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGV
Sbjct 6 WRQLERRRSSQMGRDLRRQPRHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGV 65
Query 125 YIPRAGVA 132
YIPRAGVA
Sbjct 66 YIPRAGVA 73
>gi|315442141|ref|YP_004075020.1| hypothetical protein Mspyr1_04740 [Mycobacterium sp. Spyr1]
gi|315260444|gb|ADT97185.1| hypothetical protein Mspyr1_04740 [Mycobacterium sp. Spyr1]
Length=118
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/94 (52%), Positives = 64/94 (69%), Gaps = 2/94 (2%)
Query 33 PTASRAVSWWSVHEHVAPVLDAA--GSWPMAGTPAWRQLDDADPRKWAAICDAARHWALR 90
P +S+ VSWW+VH+ V+ ++ + P AGTPAWR LDD DPRK A+ A HWALR
Sbjct 18 PASSQEVSWWAVHQFVSALVHQVKNATLPWAGTPAWRDLDDDDPRKLIALAVAGEHWALR 77
Query 91 VETCQEAMAQASRDVSAAADWPGIAREIVRRRGV 124
VE QE AQA+ DV A ADW +++++RRRG+
Sbjct 78 VEIGQERRAQAAEDVWAGADWSAESQKMLRRRGI 111
>gi|340628613|ref|YP_004747065.1| hypothetical protein MCAN_36611 [Mycobacterium canettii CIPT
140010059]
gi|340006803|emb|CCC45992.1| putative uncharacterised protein [Mycobacterium canettii CIPT
140010059]
Length=147
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (50%), Positives = 65/102 (64%), Gaps = 4/102 (3%)
Query 33 PTASRAVSWWSVHEHVAPVLDAA--GSWPMAGTPAWRQLDDADPRKWAAICDAARHWALR 90
P+ RA WW VH+ + V+ A G+ P+AGTP+W L D DPRK A+ H LR
Sbjct 48 PSQQRA--WWPVHQFLEAVVQQANYGAIPVAGTPSWCALSDGDPRKLLALAIDGEHHVLR 105
Query 91 VETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA 132
+ET Q A+A+AS ++S AADWP ++R I RR GVYI R VA
Sbjct 106 IETAQTALAEASCEISKAADWPELSRAIRRRSGVYITREVVA 147
>gi|120402459|ref|YP_952288.1| hypothetical protein Mvan_1449 [Mycobacterium vanbaalenii PYR-1]
gi|119955277|gb|ABM12282.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=116
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/95 (48%), Positives = 59/95 (63%), Gaps = 0/95 (0%)
Query 34 TASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVET 93
TAS+ VSW V+ V P L G WPMAG+PAW LDD DP KWAA+ DA +HW LR+E
Sbjct 5 TASQQVSWSDVNAFVLPKLVKVGDWPMAGSPAWCLLDDRDPVKWAAVLDAGQHWILRIEG 64
Query 94 CQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPR 128
Q+A AS ++S+A DW +R + + + R
Sbjct 65 WQQADCDASGEISSARDWAATSRLVTQHNSYFAAR 99
>gi|41408864|ref|NP_961700.1| hypothetical protein MAP2766c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397223|gb|AAS05083.1| hypothetical protein MAP_2766c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=158
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 59/96 (62%), Gaps = 4/96 (4%)
Query 25 VATPSSADP--TASRAVSWWSVHEHVAPVLDAAGSWPM--AGTPAWRQLDDADPRKWAAI 80
+ PS+ P T SR VSWW H+ + ++ A + P+ AGTPAW L D DPRK A+
Sbjct 41 LTAPSAETPGTTNSRQVSWWETHQFIEALITQANTGPLPPAGTPAWSALADGDPRKLLAL 100
Query 81 CDAARHWALRVETCQEAMAQASRDVSAAADWPGIAR 116
A H LRVET Q AMA+AS+ VSAAADW I R
Sbjct 101 AVAGEHHVLRVETAQTAMAEASQAVSAAADWTRIGR 136
>gi|308379736|ref|ZP_07669038.1| hypothetical protein TMKG_04040 [Mycobacterium tuberculosis SUMu011]
gi|308363853|gb|EFP52704.1| hypothetical protein TMKG_04040 [Mycobacterium tuberculosis SUMu011]
Length=40
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%)
Query 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVS 40
MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVS
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVS 40
>gi|342860959|ref|ZP_08717608.1| phiRv2 phage protein [Mycobacterium colombiense CECT 3035]
gi|342131403|gb|EGT84673.1| phiRv2 phage protein [Mycobacterium colombiense CECT 3035]
Length=128
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/96 (40%), Positives = 53/96 (56%), Gaps = 0/96 (0%)
Query 34 TASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVET 93
T SR + W +V AP++ S P+ GTPAW L ADPRK AA+ A ++WA
Sbjct 32 TGSREIDWCAVAVFAAPLIYRYKSLPLPGTPAWCSLPAADPRKMAALILAGQYWAFDSAL 91
Query 94 CQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRA 129
QE +AS +S ADW G +R + + R +I R+
Sbjct 92 RQERQREASDAISGCADWAGFSRTLQQHRAFHIRRS 127
>gi|343926143|ref|ZP_08765652.1| hypothetical protein GOALK_056_00110 [Gordonia alkanivorans NBRC
16433]
gi|343763772|dbj|GAA12578.1| hypothetical protein GOALK_056_00110 [Gordonia alkanivorans NBRC
16433]
Length=108
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/104 (41%), Positives = 49/104 (48%), Gaps = 16/104 (15%)
Query 38 AVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEA 97
AV+W VH V VL + +AGTP W LDD DP K A+ A W L E Q
Sbjct 5 AVTWDPVHAFVGRVLGGRTTTIVAGTPEWCALDDNDPAKITALLIAGSRWCLEEEIAQ-- 62
Query 98 MAQASRD--------VSAAADWPGIA-----REIVRRRGVYIPR 128
ASRD V AADW +A R+I R G +IPR
Sbjct 63 -LHASRDAEKAAAVEVVEAADWTAVARRIRNRDIALRTGAHIPR 105
>gi|146339310|ref|YP_001204358.1| putative transcription repair coupling factor [Bradyrhizobium
sp. ORS 278]
gi|146192116|emb|CAL76121.1| putative transcription repair coupling factor [Bradyrhizobium
sp. ORS 278]
Length=1091
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (62%), Gaps = 0/34 (0%)
Query 48 VAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAIC 81
+ P+ D WP AG P+ +LDDAD R WAA C
Sbjct 464 LVPIADLGLIWPYAGDPSGVKLDDADGRSWAARC 497
>gi|296141558|ref|YP_003648801.1| hypothetical protein Tpau_3889 [Tsukamurella paurometabola DSM
20162]
gi|296029692|gb|ADG80462.1| hypothetical protein Tpau_3889 [Tsukamurella paurometabola DSM
20162]
Length=119
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/56 (47%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query 54 AAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQ----EAMAQASRDV 105
A G P AG+ AW LDD D K AI AA W L E EAM +ASR V
Sbjct 28 AGGHIPEAGSQAWADLDDNDDIKMRAIGVAAERWVLEQELQDMRRAEAMKEASRAV 83
>gi|54027750|ref|YP_121991.1| hypothetical protein pnf11020 [Nocardia farcinica IFM 10152]
gi|54019258|dbj|BAD60627.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=623
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/63 (39%), Positives = 32/63 (51%), Gaps = 8/63 (12%)
Query 28 PSSADPTASRAVSWWSVHEHVAPVLDAA---GSWPMAGTPAWRQLDDADPRKWAAICDAA 84
PS+AD + AV W+ P L AA G P G+P W L + DPRK A+ +AA
Sbjct 478 PSTADRLSVDAVQAWA-----GPYLRAAMRRGEIPEVGSPQWAALPNGDPRKTGAVVEAA 532
Query 85 RHW 87
+
Sbjct 533 LRY 535
>gi|197105300|ref|YP_002130677.1| peptidase, M23/M37 family [Phenylobacterium zucineum HLK1]
gi|196478720|gb|ACG78248.1| peptidase, M23/M37 family [Phenylobacterium zucineum HLK1]
Length=384
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (32%), Positives = 28/54 (52%), Gaps = 0/54 (0%)
Query 59 PMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWP 112
P +G+ +D DPR AA+ D +ALR++ + +++A AA D P
Sbjct 196 PKSGSLGGPLIDSKDPRALAAVLDVDEEFALRIQRAAKDLSEARALTDAAGDLP 249
>gi|340369294|ref|XP_003383183.1| PREDICTED: CWF19-like protein 2-like [Amphimedon queenslandica]
Length=795
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 26/88 (30%), Positives = 38/88 (44%), Gaps = 13/88 (14%)
Query 50 PVLDAAGSWPMAGTPAWR--------QLDDADPRKWAAICDAARHWALR-VETCQEAMAQ 100
P++D AG P+ P WR Q D + +K I D R W LR + E Q
Sbjct 162 PLIDQAGQHPLELNPYWRKGGTGLPEQSDVKEDKKSTQIGDGGRSWLLRSYKRALERAEQ 221
Query 101 ASRDVS--AAADWPGIAR--EIVRRRGV 124
R + AA W + + E++R G+
Sbjct 222 EGRSIEEIAAVQWGSVDKLHEMLREAGI 249
>gi|163738431|ref|ZP_02145846.1| carbamoyl-phosphate synthase small subunit [Phaeobacter gallaeciensis
BS107]
gi|161388352|gb|EDQ12706.1| carbamoyl-phosphate synthase small subunit [Phaeobacter gallaeciensis
BS107]
Length=627
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/69 (38%), Positives = 32/69 (47%), Gaps = 15/69 (21%)
Query 42 WSVHEHVAPVLDAAGSWPMAG------TPAWRQLDDADPRKWAAICDA-ARHWAL----- 89
W++ H A VL A G WP +G Q+ DAD KW + DA ARH AL
Sbjct 124 WTLVSHEAEVLAAGGDWPGSGRVTDPFMSEKLQIKDADLPKWQNLFDAGARHPALVLLRA 183
Query 90 ---RVETCQ 95
R+ CQ
Sbjct 184 AGGRLLMCQ 192
>gi|283778896|ref|YP_003369651.1| hypothetical protein Psta_1108 [Pirellula staleyi DSM 6068]
gi|283437349|gb|ADB15791.1| hypothetical protein Psta_1108 [Pirellula staleyi DSM 6068]
Length=963
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/34 (45%), Positives = 22/34 (65%), Gaps = 1/34 (2%)
Query 45 HEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWA 78
H HV V D+ G++P+A AWR++DD P +A
Sbjct 766 HWHVEAVFDS-GNFPLAEKTAWREIDDVAPHDFA 798
Lambda K H
0.317 0.127 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130990493970
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40