BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1584c

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15843064|ref|NP_338101.1|  hypothetical protein MT3573.1 [Myco...   143    9e-33
gi|15608722|ref|NP_216100.1|  phiRv1 phage protein [Mycobacterium...   142    2e-32
gi|240172566|ref|ZP_04751225.1|  hypothetical protein MkanA1_2485...   106    1e-21
gi|289704579|ref|ZP_06501012.1|  conserved hypothetical protein [...  66.2    1e-09
gi|108800483|ref|YP_640680.1|  putative phiRv1 phage protein [Myc...  65.5    2e-09
gi|108801128|ref|YP_641325.1|  putative phiRv1 phage protein [Myc...  58.9    2e-07
gi|317125791|ref|YP_004099903.1|  phiRv1 phage protein [Intraspor...  58.5    3e-07
gi|320094351|ref|ZP_08026139.1|  hypothetical protein HMPREF9005_...  55.1    4e-06
gi|296164519|ref|ZP_06847090.1|  conserved hypothetical protein [...  49.7    1e-04
gi|342239684|gb|AEL19692.1|  gp40 [Mycobacterium phage Larva]         42.7    0.019
gi|184200567|ref|YP_001854774.1|  hypothetical protein KRH_09210 ...  39.3    0.17 


>gi|15843064|ref|NP_338101.1| hypothetical protein MT3573.1 [Mycobacterium tuberculosis CDC1551]
 gi|13883408|gb|AAK47915.1| hypothetical protein MT3573.1 [Mycobacterium tuberculosis CDC1551]
Length=265

 Score =  143 bits (360),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1    VSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA  60
            VSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA
Sbjct  193  VSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA  252

Query  61   ELLRPVRRSGGAR  73
            ELLRPVRRSGGAR
Sbjct  253  ELLRPVRRSGGAR  265


>gi|15608722|ref|NP_216100.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|31792770|ref|NP_855263.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
 gi|148661379|ref|YP_001282902.1| putative phiRv1 prophage protein [Mycobacterium tuberculosis 
H37Ra]
 39 more sequence titles
 
gi|167966961|ref|ZP_02549238.1| hypothetical protein MtubH3_02458 [Mycobacterium tuberculosis 
H37Ra]
 gi|254366069|ref|ZP_04982114.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289443037|ref|ZP_06432781.1| phi phage protein [Mycobacterium tuberculosis T46]
 gi|289447193|ref|ZP_06436937.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|289569624|ref|ZP_06449851.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|289751283|ref|ZP_06510661.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289753671|ref|ZP_06513049.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|306775770|ref|ZP_07414107.1| hypothetical protein TMAG_02909 [Mycobacterium tuberculosis SUMu001]
 gi|306782537|ref|ZP_07420874.1| hypothetical protein TMBG_03936 [Mycobacterium tuberculosis SUMu002]
 gi|306786356|ref|ZP_07424678.1| hypothetical protein TMCG_02620 [Mycobacterium tuberculosis SUMu003]
 gi|306790725|ref|ZP_07429047.1| hypothetical protein TMDG_03214 [Mycobacterium tuberculosis SUMu004]
 gi|306795254|ref|ZP_07433556.1| hypothetical protein TMEG_03852 [Mycobacterium tuberculosis SUMu005]
 gi|306799442|ref|ZP_07437744.1| hypothetical protein TMFG_03035 [Mycobacterium tuberculosis SUMu006]
 gi|306805289|ref|ZP_07441957.1| hypothetical protein TMHG_03995 [Mycobacterium tuberculosis SUMu008]
 gi|306809474|ref|ZP_07446142.1| hypothetical protein TMGG_03948 [Mycobacterium tuberculosis SUMu007]
 gi|306969583|ref|ZP_07482244.1| hypothetical protein TMIG_03744 [Mycobacterium tuberculosis SUMu009]
 gi|306971877|ref|ZP_07484538.1| hypothetical protein TMJG_03014 [Mycobacterium tuberculosis SUMu010]
 gi|307078194|ref|ZP_07487364.1| hypothetical protein TMKG_04041 [Mycobacterium tuberculosis SUMu011]
 gi|2117253|emb|CAB09085.1| Possible phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|31618360|emb|CAD96278.1| Possible phiRv1 phage protein [Mycobacterium bovis AF2122/97]
 gi|134151582|gb|EBA43627.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148505531|gb|ABQ73340.1| putative phiRv1 prophage protein [Mycobacterium tuberculosis 
H37Ra]
 gi|289415956|gb|EFD13196.1| phi phage protein [Mycobacterium tuberculosis T46]
 gi|289420151|gb|EFD17352.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|289543378|gb|EFD47026.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|289691870|gb|EFD59299.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289694258|gb|EFD61687.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|308215859|gb|EFO75258.1| hypothetical protein TMAG_02909 [Mycobacterium tuberculosis SUMu001]
 gi|308324798|gb|EFP13649.1| hypothetical protein TMBG_03936 [Mycobacterium tuberculosis SUMu002]
 gi|308328996|gb|EFP17847.1| hypothetical protein TMCG_02620 [Mycobacterium tuberculosis SUMu003]
 gi|308332835|gb|EFP21686.1| hypothetical protein TMDG_03214 [Mycobacterium tuberculosis SUMu004]
 gi|308336467|gb|EFP25318.1| hypothetical protein TMEG_03852 [Mycobacterium tuberculosis SUMu005]
 gi|308340345|gb|EFP29196.1| hypothetical protein TMFG_03035 [Mycobacterium tuberculosis SUMu006]
 gi|308344229|gb|EFP33080.1| hypothetical protein TMGG_03948 [Mycobacterium tuberculosis SUMu007]
 gi|308348160|gb|EFP37011.1| hypothetical protein TMHG_03995 [Mycobacterium tuberculosis SUMu008]
 gi|308352846|gb|EFP41697.1| hypothetical protein TMIG_03744 [Mycobacterium tuberculosis SUMu009]
 gi|308358732|gb|EFP47583.1| hypothetical protein TMJG_03014 [Mycobacterium tuberculosis SUMu010]
 gi|308363854|gb|EFP52705.1| hypothetical protein TMKG_04041 [Mycobacterium tuberculosis SUMu011]
 gi|323717853|gb|EGB27043.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=73

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   VSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA  60
           +STIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA
Sbjct  1   MSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA  60

Query  61  ELLRPVRRSGGAR  73
           ELLRPVRRSGGAR
Sbjct  61  ELLRPVRRSGGAR  73


>gi|240172566|ref|ZP_04751225.1| hypothetical protein MkanA1_24850 [Mycobacterium kansasii ATCC 
12478]
Length=92

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 52/67 (78%), Positives = 60/67 (90%), Gaps = 0/67 (0%)

Query  1   VSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA  60
           +STIY HRGRVAALSRSR +DDP+++AA+ DL AAN+  Y+ RTLAAAPPLTDEQRTRLA
Sbjct  1   MSTIYRHRGRVAALSRSRPADDPDYLAAQRDLAAANVESYITRTLAAAPPLTDEQRTRLA  60

Query  61  ELLRPVR  67
           ELLRPVR
Sbjct  61  ELLRPVR  67


>gi|289704579|ref|ZP_06501012.1| conserved hypothetical protein [Micrococcus luteus SK58]
 gi|289558699|gb|EFD51957.1| conserved hypothetical protein [Micrococcus luteus SK58]
Length=71

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 43/61 (71%), Gaps = 0/61 (0%)

Query  7   HRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPV  66
            R RVA+LSRSR  DDPE + A+ +L A  +A Y+ R +A APPLTD QR R+A LLRP 
Sbjct  6   ERARVASLSRSRTPDDPELLDARRNLAAERLALYVARVVAEAPPLTDAQRDRIAALLRPT  65

Query  67  R  67
           +
Sbjct  66  K  66


>gi|108800483|ref|YP_640680.1| putative phiRv1 phage protein [Mycobacterium sp. MCS]
 gi|119869622|ref|YP_939574.1| putative phiRv1 phage protein [Mycobacterium sp. KMS]
 gi|108770902|gb|ABG09624.1| putative phiRv1 phage protein [Mycobacterium sp. MCS]
 gi|119695711|gb|ABL92784.1| putative phiRv1 phage protein [Mycobacterium sp. KMS]
Length=75

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 46/61 (76%), Gaps = 1/61 (1%)

Query  14  LSRSRASDDPEFIA-AKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPVRRSGGA  72
           ++R+  + DP   A A+ +L  A IADY+ R LAAAPPL+DEQRTRLAEL+RPVR +GG 
Sbjct  15  VARATKAGDPTAEADARRELAEAKIADYVRRCLAAAPPLSDEQRTRLAELIRPVRVNGGI  74

Query  73  R  73
           R
Sbjct  75  R  75


>gi|108801128|ref|YP_641325.1| putative phiRv1 phage protein [Mycobacterium sp. MCS]
 gi|108771547|gb|ABG10269.1| putative phiRv1 phage protein [Mycobacterium sp. MCS]
Length=73

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 41/66 (63%), Positives = 46/66 (70%), Gaps = 1/66 (1%)

Query  8   RGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPVR  67
           R RVAALSR+ A DD     A+ DL AA I  Y+ R L  APPLTDEQ +RLAELLRPV 
Sbjct  9   RARVAALSRTDAGDDDRRREARRDLNAAKIQAYIERALQQAPPLTDEQLSRLAELLRPV-  67

Query  68  RSGGAR  73
           R GGA+
Sbjct  68  RVGGAQ  73


>gi|317125791|ref|YP_004099903.1| phiRv1 phage protein [Intrasporangium calvum DSM 43043]
 gi|315589879|gb|ADU49176.1| phiRv1 phage protein [Intrasporangium calvum DSM 43043]
Length=72

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/65 (53%), Positives = 42/65 (65%), Gaps = 4/65 (6%)

Query  8   RGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPVR  67
           R  +AALSRSR  DDP+ +AA+    AA +  Y+ R +A  PPL+DEQR RLA LL    
Sbjct  11  RATIAALSRSRTPDDPDLVAARQAHKAARLQGYIERVVADWPPLSDEQRARLAVLL----  66

Query  68  RSGGA  72
           R GGA
Sbjct  67  RGGGA  71


>gi|320094351|ref|ZP_08026139.1| hypothetical protein HMPREF9005_0751 [Actinomyces sp. oral taxon 
178 str. F0338]
 gi|319978739|gb|EFW10294.1| hypothetical protein HMPREF9005_0751 [Actinomyces sp. oral taxon 
178 str. F0338]
Length=72

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 28/51 (55%), Positives = 37/51 (73%), Gaps = 0/51 (0%)

Query  13  ALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELL  63
           +L+RSR+ DDP  +AA+ DL AA + D + R LA+APPL  EQR RLA +L
Sbjct  14  SLTRSRSEDDPTLLAARQDLHAAELEDAINRALASAPPLGAEQRARLAAML  64


>gi|296164519|ref|ZP_06847090.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900119|gb|EFG79554.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=75

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query  1   VSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLA  60
           +S +   R  +   +R    + P+ I A+    A   A Y+ + LA APPL DEQR RLA
Sbjct  1   MSAVTKARSDLGVKTRKLGPNHPDTIEARRTFRAEQTAAYIEKVLAEAPPLNDEQRARLA  60

Query  61  ELLRPVR---RSGGA  72
           EL RP     RSG A
Sbjct  61  ELFRPTNADTRSGVA  75


>gi|342239684|gb|AEL19692.1| gp40 [Mycobacterium phage Larva]
Length=48

 Score = 42.7 bits (99),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 21/36 (59%), Positives = 26/36 (73%), Gaps = 0/36 (0%)

Query  36  NIADYLIRTLAAAPPLTDEQRTRLAELLRPVRRSGG  71
           ++ +Y  +  AAAPPLTD QR RLA+LLRP RR  G
Sbjct  5   SVEEYAEQVAAAAPPLTDAQRGRLADLLRPARRRRG  40


>gi|184200567|ref|YP_001854774.1| hypothetical protein KRH_09210 [Kocuria rhizophila DC2201]
 gi|183580797|dbj|BAG29268.1| hypothetical protein [Kocuria rhizophila DC2201]
Length=51

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 19/33 (58%), Positives = 22/33 (67%), Gaps = 0/33 (0%)

Query  40  YLIRTLAAAPPLTDEQRTRLAELLRPVRRSGGA  72
           Y+ R +A APPL D Q+  LA LLRPV   GGA
Sbjct  17  YVARLVAEAPPLNDAQKAALAGLLRPVETRGGA  49



Lambda     K      H
   0.320    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131942442484


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40