BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1585c
Length=171
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608723|ref|NP_216101.1| phiRv1 phage protein [Mycobacterium... 350 3e-95
gi|254366068|ref|ZP_04982113.1| possible phiRv1 phage protein [M... 349 8e-95
gi|289447194|ref|ZP_06436938.1| phiRv1 phage protein [Mycobacter... 349 8e-95
gi|15843064|ref|NP_338101.1| hypothetical protein MT3573.1 [Myco... 275 1e-72
gi|240172565|ref|ZP_04751224.1| putative phiRv1 prophage protein... 168 3e-40
gi|39968213|ref|XP_365497.1| hypothetical protein MGG_02199 [Mag... 35.4 3.3
gi|269125651|ref|YP_003299021.1| hypothetical protein Tcur_1402 ... 34.7 4.7
gi|320587363|gb|EFW99843.1| mitochondrial aconitate hydratase [G... 33.9 8.1
>gi|15608723|ref|NP_216101.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|31792771|ref|NP_855264.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|148661380|ref|YP_001282903.1| putative phiRv1 prophage protein [Mycobacterium tuberculosis
H37Ra]
35 more sequence titles
Length=171
Score = 350 bits (899), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 171/171 (100%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 1 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA
Sbjct 1 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
Query 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 120
VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP
Sbjct 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 120
Query 121 RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC 171
RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC
Sbjct 121 RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC 171
>gi|254366068|ref|ZP_04982113.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151581|gb|EBA43626.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
Length=173
Score = 349 bits (896), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 170/171 (99%), Positives = 170/171 (99%), Gaps = 0/171 (0%)
Query 1 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDE QGWLPQAPAVATLLDDDNQPRA
Sbjct 3 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDEAQGWLPQAPAVATLLDDDNQPRA 62
Query 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 120
VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP
Sbjct 63 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 122
Query 121 RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC 171
RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC
Sbjct 123 RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC 173
>gi|289447194|ref|ZP_06436938.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289420152|gb|EFD17353.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
Length=171
Score = 349 bits (895), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 170/171 (99%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 1 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
MSRHHNIVIVCDHGRKGDGRIEH+RCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA
Sbjct 1 MSRHHNIVIVCDHGRKGDGRIEHKRCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
Query 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 120
VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP
Sbjct 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 120
Query 121 RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC 171
RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC
Sbjct 121 RLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC 171
>gi|15843064|ref|NP_338101.1| hypothetical protein MT3573.1 [Mycobacterium tuberculosis CDC1551]
gi|13883408|gb|AAK47915.1| hypothetical protein MT3573.1 [Mycobacterium tuberculosis CDC1551]
Length=265
Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)
Query 1 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA
Sbjct 3 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 62
Query 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 120
VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP
Sbjct 63 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVP 122
Query 121 RLLTGLAGNPD 131
RLLTGLAGNPD
Sbjct 123 RLLTGLAGNPD 133
>gi|240172565|ref|ZP_04751224.1| putative phiRv1 prophage protein [Mycobacterium kansasii ATCC
12478]
Length=170
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/167 (54%), Positives = 109/167 (66%), Gaps = 8/167 (4%)
Query 1 MSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRA 60
M+ H +I IVCDHGRKGDGRIEHE CDLVAPIIW D+ QGWLPQAPA+AT L D +QPRA
Sbjct 1 MTEHPDIAIVCDHGRKGDGRIEHEHCDLVAPIIWADDDQGWLPQAPAIATYLADTDQPRA 60
Query 61 VIGLPPNESRLRPEMRRDGWVRLHWEFACLRYG-AAGVRTCEQRPVRVRNGDLQTLCENV 119
+G+ PN SR++P RRDGW RLH+EF C +Y R C ++PVRVRN DLQ +CE +
Sbjct 61 GVGMDPNRSRIQPGTRRDGWTRLHFEFVCPQYSEVVADRACTRQPVRVRNNDLQRVCELL 120
Query 120 ----PRLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKL 162
P L+ L + F + AV + M C DTP +L
Sbjct 121 AAGDPVLIGALVKVFPHGISFQLHG-AVALTMDAVEAAC--DTPGEL 164
>gi|39968213|ref|XP_365497.1| hypothetical protein MGG_02199 [Magnaporthe oryzae 70-15]
gi|145013080|gb|EDJ97721.1| hypothetical protein MGG_02199 [Magnaporthe oryzae 70-15]
Length=118
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query 13 HGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDN-----QPRAVIG-LPP 66
+G+ GDG H R D ++W + + G + + +AT+ DDD+ Q G +
Sbjct 20 NGQVGDGTRFHYRQD--GRVVWAEYSGGSIAKGFLIATVADDDSLDMRYQHVDTSGEIRT 77
Query 67 NESRLRPEMRRDGWVRLHWE 86
+ RPEM DG +RLH E
Sbjct 78 GKCLSRPEMLADGRLRLHEE 97
>gi|269125651|ref|YP_003299021.1| hypothetical protein Tcur_1402 [Thermomonospora curvata DSM 43183]
gi|268310609|gb|ACY96983.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183]
Length=1228
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/71 (34%), Positives = 34/71 (48%), Gaps = 2/71 (2%)
Query 93 GAAGVRTCEQRPVRVRNGDLQTLCENVPRLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRT 152
G A + E RP R + +LQ E++ + L G AG+ D G A AV A W+
Sbjct 105 GIAHLLLAEHRPER-KGEELQQAVESLRQALAG-AGDDDLMRGMAASRLAVAFACWVLHD 162
Query 153 LCESDTPNKLR 163
L SD +L+
Sbjct 163 LAVSDKAARLK 173
>gi|320587363|gb|EFW99843.1| mitochondrial aconitate hydratase [Grosmannia clavigera kw1407]
Length=788
Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 36/125 (29%), Positives = 59/125 (48%), Gaps = 5/125 (4%)
Query 42 LPQAPAVA-TLLDDDNQPRAVIGLPPNESRLRPEMRRDGWVRLHWEFACLRYG-AAGVRT 99
+ +A A+A LD +P+A+ + P ++R + RDG ++ EF L A G
Sbjct 400 MTRAAAIARDALDHGVKPKALFTVTPGSEQIRATIARDGQLQTFEEFGGLVLANACGPCI 459
Query 100 CEQRPVRVRNGDLQTLCENVPRLLTGLA-GNPDYAPGFAVQSDAVVVAMWLWRTLCESDT 158
+ V+ G+ T+ + R TG GNP A V S +VVA+ + TL +
Sbjct 460 GQWDRQDVKKGEANTIVSSYNRNFTGRNDGNP--ATHAFVTSPDLVVALTIAGTLNFNPL 517
Query 159 PNKLR 163
+KL+
Sbjct 518 TDKLK 522
Lambda K H
0.322 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 136720389372
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40