BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1586c Length=469 Score E Sequences producing significant alignments: (Bits) Value gi|15608724|ref|NP_216102.1| phiRv1 integrase [Mycobacterium tub... 950 0.0 gi|15843063|ref|NP_338100.1| integrase, putative [Mycobacterium ... 937 0.0 gi|240172564|ref|ZP_04751223.1| integrase, putative [Mycobacteri... 677 0.0 gi|108801130|ref|YP_641327.1| recombinase [Mycobacterium sp. MCS... 577 2e-162 gi|339784328|gb|AEK10036.1| gp148 [Mycobacterium phage Rey] 258 2e-66 gi|226305537|ref|YP_002765497.1| recombinase [Rhodococcus erythr... 249 6e-64 gi|226305381|ref|YP_002765339.1| recombinase [Rhodococcus erythr... 243 4e-62 gi|119715329|ref|YP_922294.1| recombinase [Nocardioides sp. JS61... 243 6e-62 gi|284989727|ref|YP_003408281.1| resolvase domain-containing pro... 243 7e-62 gi|120402458|ref|YP_952287.1| recombinase [Mycobacterium vanbaal... 234 3e-59 gi|108800781|ref|YP_640978.1| recombinase [Mycobacterium sp. MCS... 228 2e-57 gi|271963392|ref|YP_003337588.1| Site-specific recombinase DNA i... 226 6e-57 gi|320094349|ref|ZP_08026137.1| recombinase [Actinomyces sp. ora... 221 2e-55 gi|302520915|ref|ZP_07273257.1| recombinase [Streptomyces sp. SP... 221 3e-55 gi|315606068|ref|ZP_07881099.1| recombinase [Actinomyces sp. ora... 221 3e-55 gi|108800484|ref|YP_640681.1| recombinase [Mycobacterium sp. MCS... 218 1e-54 gi|296128476|ref|YP_003635726.1| Resolvase domain protein [Cellu... 216 5e-54 gi|184200569|ref|YP_001854776.1| putative recombinase [Kocuria r... 215 1e-53 gi|119869623|ref|YP_939575.1| recombinase [Mycobacterium sp. KMS... 214 3e-53 gi|284033432|ref|YP_003383363.1| Recombinase [Kribbella flavida ... 210 4e-52 gi|284991973|ref|YP_003410527.1| resolvase domain-containing pro... 208 2e-51 gi|108802532|ref|YP_642728.1| recombinase [Mycobacterium sp. MCS... 208 2e-51 gi|296129084|ref|YP_003636334.1| Resolvase domain protein [Cellu... 207 4e-51 gi|326383241|ref|ZP_08204929.1| Recombinase [Gordonia neofelifae... 207 4e-51 gi|300781577|ref|ZP_07091431.1| recombinase [Corynebacterium gen... 207 4e-51 gi|296164237|ref|ZP_06846829.1| recombinase [Mycobacterium paras... 204 4e-50 gi|118462904|ref|YP_882962.1| integrase/recombinase [Mycobacteri... 203 5e-50 gi|296394362|ref|YP_003659246.1| resolvase domain-containing pro... 202 8e-50 gi|88856348|ref|ZP_01131007.1| integrase, putative [marine actin... 202 1e-49 gi|111219778|ref|YP_710572.1| putative integrase/recombinase [Fr... 199 1e-48 gi|111222235|ref|YP_713029.1| hypothetical protein FRAAL2816 [Fr... 197 4e-48 gi|227506239|ref|ZP_03936288.1| recombinase [Corynebacterium str... 196 1e-47 gi|345008918|ref|YP_004811272.1| Resolvase domain-containing pro... 194 2e-47 gi|269219204|ref|ZP_06163058.1| putative integrase [Actinomyces ... 194 3e-47 gi|183982143|ref|YP_001850434.1| site-specific integrase [Mycoba... 193 5e-47 gi|311744269|ref|ZP_07718073.1| recombinase [Aeromicrobium marin... 189 9e-46 gi|255325530|ref|ZP_05366632.1| recombinase [Corynebacterium tub... 185 2e-44 gi|340774477|gb|EGR96961.1| recombinase [Propionibacterium acnes... 184 3e-44 gi|297157701|gb|ADI07413.1| recombinase [Streptomyces bingchengg... 182 7e-44 gi|296141572|ref|YP_003648815.1| resolvase [Tsukamurella paurome... 181 2e-43 gi|229821003|ref|YP_002882529.1| Resolvase domain-containing pro... 177 4e-42 gi|289704580|ref|ZP_06501013.1| resolvase, N-terminal domain pro... 174 3e-41 gi|29831011|ref|NP_825645.1| integrase/recombinase [Streptomyces... 170 4e-40 gi|345008179|ref|YP_004810533.1| Resolvase domain-containing pro... 167 3e-39 gi|29832091|ref|NP_826725.1| integrase/recombinase [Streptomyces... 166 8e-39 gi|793759|dbj|BAA07372.1| ORF469 protein [Bacteriophage R4] 165 2e-38 gi|226306020|ref|YP_002765980.1| integrase [Rhodococcus erythrop... 164 3e-38 gi|315502208|ref|YP_004081095.1| resolvase domain-containing pro... 162 8e-38 gi|295394546|ref|ZP_06804768.1| possible integrase/recombinase [... 162 2e-37 gi|148273470|ref|YP_001223031.1| putative integrase/recombinase ... 160 5e-37 >gi|15608724|ref|NP_216102.1| phiRv1 integrase [Mycobacterium tuberculosis H37Rv] gi|31792772|ref|NP_855265.1| phiRv1 integrase [Mycobacterium bovis AF2122/97] gi|148661381|ref|YP_001282904.1| putative integrase [Mycobacterium tuberculosis H37Ra] 23 more sequence titles Length=469 Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/469 (99%), Positives = 469/469 (100%), Gaps = 0/469 (0%) Query 1 VRYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRR 60 +RYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRR Sbjct 1 MRYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRR 60 Query 61 PAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQ 120 PAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQ Sbjct 61 PAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQ 120 Query 121 GRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPL 180 GRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPL Sbjct 121 GRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPL 180 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG Sbjct 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA Sbjct 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 Query 301 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETI 360 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETI Sbjct 301 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETI 360 Query 361 RLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPL 420 RLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPL Sbjct 361 RLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPL 420 Query 421 GTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 GTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR Sbjct 421 GTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 >gi|15843063|ref|NP_338100.1| integrase, putative [Mycobacterium tuberculosis CDC1551] gi|167966963|ref|ZP_02549240.1| putative integrase [Mycobacterium tuberculosis H37Ra] gi|254366067|ref|ZP_04982112.1| integrase [Mycobacterium tuberculosis str. Haarlem] 17 more sequence titles Length=463 Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQM 66 +RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQM Sbjct 1 MRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQM 60 Query 67 LADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVAR 126 LADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVAR Sbjct 61 LADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVAR 120 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYA 186 LKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYA Sbjct 121 LKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYA 180 Query 187 DILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDA 246 DILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDA Sbjct 181 DILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDA 240 Query 247 IVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD 306 IVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD Sbjct 241 IVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD 300 Query 307 GQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELET 366 GQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELET Sbjct 301 GQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELET 360 Query 367 LYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVA 426 LYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVA Sbjct 361 LYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVA 420 Query 427 GMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 GMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR Sbjct 421 GMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 463 >gi|240172564|ref|ZP_04751223.1| integrase, putative [Mycobacterium kansasii ATCC 12478] Length=468 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/469 (71%), Positives = 378/469 (81%), Gaps = 7/469 (1%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQM 66 +RAAVYLRIS D SG+QLGVARQREDC++LC QRKW P+EY+DNDV AS GKRRPAYE+M Sbjct 1 MRAAVYLRISSDPSGQQLGVARQREDCVRLCKQRKWTPIEYVDNDVGASNGKRRPAYEKM 60 Query 67 LADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVAR 126 LADIT G+I AVVAWDLDRLHRRPIELE FM LAD ++LALATV+GDVDL+T QGRL AR Sbjct 61 LADITDGQIGAVVAWDLDRLHRRPIELERFMDLADTRKLALATVSGDVDLSTAQGRLTAR 120 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYA 186 LKG+VA HE EHK RQRRA RQ AE G P W AFGYL GPNGPEPDP TAPLVKQAYA Sbjct 121 LKGAVARHEIEHKSDRQRRAGRQAAEMGRPRWKHAFGYLAGPNGPEPDPATAPLVKQAYA 180 Query 187 DILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDA 246 ILAGAS GD+C++W+ G TI G+ WT LS FLRKPRNAGLR Y+ + +D Sbjct 181 AILAGASFGDICKEWDATGVRTINGKRWTQPQLSNFLRKPRNAGLRTYQADPHRAT-KDD 239 Query 247 IVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD 306 +VGK W+PLVDEATFWAAQAVLDAPGRAPGRKSVRRH LTG+ CGKC +HL+G + T Sbjct 240 VVGKGSWTPLVDEATFWAAQAVLDAPGRAPGRKSVRRHKLTGILLCGKCDHHLSGMWTTQ 299 Query 307 GQ------VVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETI 360 + Y CK C G +I A +IEP+LY +V+ RLAMPDA++LL+ E+HD AEAE I Sbjct 300 KTSTGSPAIAYTCKRCRGNSIRATHIEPLLYTLVSGRLAMPDAINLLKAELHDQAEAEVI 359 Query 361 RLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPL 420 RLELETLY ELD + VER +GLLT +Q KI+TDI+N KIT LQ RQ+DQERLRVFDGIPL Sbjct 360 RLELETLYSELDNIGVERGQGLLTGQQAKIATDIINTKITALQDRQRDQERLRVFDGIPL 419 Query 421 GTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 GTPQVA IA+LS DRFRAVLDVLA +VV PVGK G++FNP+RVQVNWR Sbjct 420 GTPQVADAIAQLSADRFRAVLDVLAVIVVMPVGKGGKVFNPDRVQVNWR 468 >gi|108801130|ref|YP_641327.1| recombinase [Mycobacterium sp. MCS] gi|108771549|gb|ABG10271.1| Recombinase [Mycobacterium sp. MCS] Length=460 Score = 577 bits (1486), Expect = 2e-162, Method: Compositional matrix adjust. Identities = 289/463 (63%), Positives = 354/463 (77%), Gaps = 14/463 (3%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQMLA 68 AAVYLRIS D +G+QLGVARQREDC+ LC + W PVEY+DNDVSAS+G+RRPAYE+ML Sbjct 6 AAVYLRISADPTGQQLGVARQREDCVALCESKGWQPVEYVDNDVSASSGRRRPAYERMLT 65 Query 69 DITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARLK 128 DI GKI AVVAWDLDRLHRRPIELE FM LAD RLALATV+GDVDL+T QG+LVARLK Sbjct 66 DIRDGKIGAVVAWDLDRLHRRPIELERFMDLADAHRLALATVSGDVDLSTSQGKLVARLK 125 Query 129 GSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPE-PDPRTAPLVKQAYAD 187 G+VA HE +HK+ RQ RAA+QKAERG P W AFGYL P+G PDP TAPLVKQAYA Sbjct 126 GAVARHEVDHKRDRQLRAAQQKAERGEPQWRNAFGYL--PDGSRVPDPTTAPLVKQAYAA 183 Query 188 ILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDAI 247 +LAGASL D+CR +NDAGA+ + G+PWT T +S+FLRKPRNAGLR++ G I Sbjct 184 VLAGASLNDICRLFNDAGAYGLNGKPWTATLVSQFLRKPRNAGLRSHNG---------EI 234 Query 248 VGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD- 306 VGK W LVDE+ + AAQ+VLDAPGRAPGRK+VRRHLLTG+ GCGKCG++L+G D Sbjct 235 VGKGTWPELVDESLWRAAQSVLDAPGRAPGRKTVRRHLLTGVLGCGKCGHYLSGMQTVDR 294 Query 307 GQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELET 366 ++ Y CK C GV+I AD +EPI+ +VA RLAM DAV+LLR E HD AEAE +R E T Sbjct 295 KRITYACKECRGVSIRADYVEPIVIGLVAGRLAMGDAVNLLRAE-HDDAEAEKLRTEANT 353 Query 367 LYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVA 426 L LD +A ERA+GL+ + ++ D +N ++ ++ RQQD ER+RVFDG+PLGTP+V Sbjct 354 LRARLDEIAGERADGLIDGKGYRVMVDRINGQLAVIERRQQDAERVRVFDGLPLGTPEVD 413 Query 427 GMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 + +LSPDR RAV+DVL + +PVGK G F+P+RV+ W+ Sbjct 414 AAVGKLSPDRLRAVIDVLVTLTAEPVGKGGNTFDPDRVKYAWK 456 >gi|339784328|gb|AEK10036.1| gp148 [Mycobacterium phage Rey] Length=484 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 166/463 (36%), Positives = 253/463 (55%), Gaps = 28/463 (6%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGK-RRPAYEQ 65 +R VYLR+S D+ +LG+ RQREDCL L + WVPVEY+DND SA+ +R ++ Sbjct 17 LRVGVYLRMSTDK---ELGIDRQREDCLALAERLGWVPVEYIDNDRSATKENVKREGFDA 73 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADE-----KRLALATV-AGDVDLATP 119 + DI G+I +++ W DRL+R+ +L + L KR+ + T G +DL T Sbjct 74 LSEDIRDGRIDSIITWRSDRLYRKMKDLLPLIDLIQGVNKTGKRIPIETCQTGLIDLTTD 133 Query 120 QGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAP 179 GR+ A++ +V+ +E E + ARQ RA Q A+ G + AFG+ P P+ P A Sbjct 134 AGRMTAKILAAVSENEGEVRTARQMRAYEQIADSGRRLGAPAFGWTHDPRDPQIVPEEAA 193 Query 180 LVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARY 239 ++QAYAD+LAG +L + ++WN+ G T G + + + K LR PRNAGL + Sbjct 194 AIRQAYADVLAGCTLYSIAKKWNEDGLRTTRGNQFVGSVVGKILRSPRNAGLLTF----- 248 Query 240 GPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHL 299 RD IVG+ W P+VD T+ AA AVLD VR LL+G+ CG CGN + Sbjct 249 ----RDEIVGEGTWEPIVDRETWEAACAVLDQKNTGKKGPRVRSTLLSGIVRCGACGNKM 304 Query 300 AGSYRTDGQVVYVCK---AC-HGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAA 355 A ++G+ +Y CK C HGV + ++ + + +L + + ++ DA Sbjct 305 AAGKNSNGEPIYKCKRYEVCKHGVTRVRKKVDKYVEMSMVAKLEQRKWI--VGTQV-DAE 361 Query 356 EAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVF 415 +A+ + E E L A+G LT QVK +TD VNAK+ ++ A+ R RVF Sbjct 362 QAKGLHAEAEALRARKASFGEALADGTLTPAQVKDATDRVNAKLEEIDAKLARLTRSRVF 421 Query 416 DGIPLGTPQVAGMIAELSPDRFRAVLDVLAE-VVVQPVGKSGR 457 DG+ LG + + L +R RA+++ L + +V+Q VG++GR Sbjct 422 DGL-LGHDDLEKVWLGLDLERKRAIIESLCDKIVIQHVGQTGR 463 >gi|226305537|ref|YP_002765497.1| recombinase [Rhodococcus erythropolis PR4] gi|226184654|dbj|BAH32758.1| putative recombinase [Rhodococcus erythropolis PR4] Length=454 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 162/469 (35%), Positives = 245/469 (53%), Gaps = 22/469 (4%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQ 65 +RA +Y RIS DR G LGV RQREDC L + W V+ + DND+SA +GK RPAY+ Sbjct 1 MRALIYCRISADREGSGLGVDRQREDCEALADKLGWEVVDVFTDNDLSAYSGKPRPAYKA 60 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 ML ++ G+ AV+AW DRLHR P+ELE+F+SL + + + TV AG++DL+TP G++ Sbjct 61 MLEELRKGRAQAVIAWHTDRLHRSPVELESFISLCEPLSIVVRTVQAGEIDLSTPSGQMN 120 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNW---SKAFGYLPGPNGPEPDPRTAPLV 181 AR+ G+VA HE +H + R RA Q A G W + FGY +G P A + Sbjct 121 ARIVGAVARHEIDHARKRMVRAHEQAAAAG--KWRARRQVFGYT--KDGTSTVPTEAQAI 176 Query 182 KQAYADILAGASLGDVCRQWNDAGAFTI-TGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 + A AD+LAG SL V R+WN+AG + + + W +++ + L PR A L+ Y+G Sbjct 177 RLAAADVLAGKSLRQVAREWNEAGHVSKGSAQKWNASSVRRILANPRYAALQEYQG---- 232 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 IVG W ++D A A+ P R+ + R+H +G+ CG CG + Sbjct 233 -----RIVGNGNWPQILDRDEHAALLALFADPKRSSRLGNERKHQGSGVYRCGICGATMT 287 Query 301 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETI 360 +Y +DG + Y C A ++ + ++ + +V RL+ PDA L D +T Sbjct 288 MTYTSDGALHYRCTASAHLSRQGEALDAWVDELVLGRLSRPDAQMTLETRDRDLPALQT- 346 Query 361 RLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPL 420 E + L +D+LA AEG + + Q++ T+ + K+ +L D + + L Sbjct 347 --ERDGLQSRMDQLAAMFAEGDIDSSQLRRGTEDLRVKVARLDEELADARSVSPLADLVL 404 Query 421 GTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 + LS D V+ L +VVV + R F PE + + WR Sbjct 405 AGDDLRSRWEALSADLRGQVIASLMDVVVLRSPRGLRRFEPEYISITWR 453 >gi|226305381|ref|YP_002765339.1| recombinase [Rhodococcus erythropolis PR4] gi|226184496|dbj|BAH32600.1| putative recombinase [Rhodococcus erythropolis PR4] Length=451 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 170/472 (37%), Positives = 248/472 (53%), Gaps = 33/472 (6%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQ 65 +RAA+Y RIS D++GE LGV RQ DC KL W V+ Y DNDVSA +GK RP YE Sbjct 1 MRAAIYTRISVDQTGEGLGVERQLSDCDKLAESLNWTVVQRYSDNDVSAFSGKLRPGYET 60 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 +L + AG++ A++AW DRLHR PIELE F+ +ADE + + TV G +DL+T GR+V Sbjct 61 LLTAMQAGEVDALIAWHSDRLHRSPIELERFIEIADEAGVEIRTVHGGTLDLSTSAGRMV 120 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNWS-KAFGYLPGPNGPEPDPRTAPLVKQ 183 AR+ GSVA E+EH R++RA QKA G S + FGY EP+ A +K Sbjct 121 ARILGSVARQESEHSSERRKRANDQKAASGAWQASRRPFGYTLAGEPLEPE---AGAIKA 177 Query 184 AYADILAGASLGDVCRQWNDAGAFTITGRP-WTTTTLSKFLRKPRNAGLRAYKGARYGPV 242 A AD+LAG S+ V R+WN G T G W+ T++ + L+ PR A LR ++G Sbjct 178 AVADVLAGKSIRQVAREWNKQGLRTTHGGTLWSATSVRRVLKNPRYAALRVHRG------ 231 Query 243 DRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGS 302 +VG+ W PL++ + A + P RA R+ +G+ CG CG+ L Sbjct 232 ---VVVGEGIWEPLIEPDAHYGLLAYVSDPARAQKVSFERKWQGSGVYACGVCGSKLI-V 287 Query 303 YRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHD-AAEAETIR 361 + ++ + Y C H V + ++ + + RL+ D +R + + T++ Sbjct 288 HVSEKKRAYKCPQNH-VRRQGEALDAFVDAVTLARLSESD----VRLSVESPGVDVSTLQ 342 Query 362 LELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLG 421 + +TL G LD+LA AEG + A Q++ ++ + ++ Q D E G PL Sbjct 343 IGRDTLQGRLDQLAAMFAEGAIDASQLRRGSEDLREQLA-----QVDAELGAARQGSPLV 397 Query 422 TPQVAGMI-----AELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNW 468 +AG AELS D V++ L V V K R F+PE + + W Sbjct 398 DLVLAGEALGERWAELSADMRGKVVEALMSVTVIRSPKGLRRFDPEYINIEW 449 >gi|119715329|ref|YP_922294.1| recombinase [Nocardioides sp. JS614] gi|119535990|gb|ABL80607.1| Recombinase [Nocardioides sp. JS614] Length=465 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 172/467 (37%), Positives = 236/467 (51%), Gaps = 19/467 (4%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPV-EYLDNDVSASTG-KRRPAYE 64 R A+YLR+S DR+G+ L V RQREDCL++ R W V EY+DN +SAS K RP YE Sbjct 3 TRCALYLRVSLDRTGDHLAVDRQREDCLEIARLRGWTVVGEYVDNSISASNAAKVRPGYE 62 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLV 124 ++++D AG A+V WDLDRL R+P +LE ++ A+E+ L L T G+ DL T GR+ Sbjct 63 RLVSDFDAGAFDALVCWDLDRLTRQPRQLEDWIDAAEERGLRLVTANGEADLGTDGGRMF 122 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGH-PNWSKAFGYLPGPNGPEPDPRTAPLVKQ 183 AR+K +VA E E K ARQ RA RQ+AERG P + GY E + A +V++ Sbjct 123 ARVKAAVARSEVERKSARQTRALRQRAERGRLPAGVRLTGYATDGTVDEVE---ASVVRE 179 Query 184 AYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVD 243 + L G SL + G T +GRPW +++ L PR AGL YKGA PV Sbjct 180 MFERFLVGDSLKAIAADLERRGIVTRSGRPWNPSSVRTVLLNPRYAGLSVYKGA---PVV 236 Query 244 RDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSV-RRHLLTGLAGCGKCGNHLAGS 302 +D W P+V EAT+ A +A L P R RK RRHL +GL CG+C + Sbjct 237 KDGERVPGAWEPIVTEATYDAVRARLADPARKSNRKGTHRRHLGSGLFLCGECDKPM--- 293 Query 303 YRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRL 362 RT Y C H + ++ + +V RLA PD DLL D E+ ++ Sbjct 294 -RTHNS-RYRCPDAHLMRSRG-QVDDFVLRVVRARLARPDLRDLLASSNDD--ESASLTA 348 Query 363 ELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGT 422 E+E L + + EG + R+ ++ A++ QAR+ GI L Sbjct 349 EIEDQRRRLAAIEHDYDEGHIDGRRYAEASGKARARLDAAQARRTALTAGSAASGI-LDA 407 Query 423 PQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 P S R V+D L V + R FNP+ V + WR Sbjct 408 PDPVAAFDSASLGARRTVIDALLSVRLMRAPVGSRTFNPDSVHIEWR 454 >gi|284989727|ref|YP_003408281.1| resolvase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062972|gb|ADB73910.1| Resolvase domain protein [Geodermatophilus obscurus DSM 43160] Length=460 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 166/476 (35%), Positives = 245/476 (52%), Gaps = 34/476 (7%) Query 8 RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQM 66 RAA+Y RIS D LGV RQR++C L R W V ++DNDVSA +GKRRPAYE++ Sbjct 4 RAAIYCRISSDPRDTGLGVDRQRQECRDLAVARGWDIVRVHVDNDVSAFSGKRRPAYERL 63 Query 67 LADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLVA 125 LAD++AG + V+AW DRLHR P+ELE F+ ++ + + TV AG DL+T GR A Sbjct 64 LADVSAGAVDVVLAWHPDRLHRSPLELEEFIVAVEKGGVGVQTVTAGQWDLSTATGRFFA 123 Query 126 RLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLP--GPNGPEPD---PRTAPL 180 R G VA +E+EH+ R R Q A RG + +G+ P+ D A + Sbjct 124 RQLGGVARYESEHRGERLRAKLDQNAARGVTHGRATYGWRAEYAPDKTRCDVVHEEEADV 183 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 V+ +LAG SL + N G + G PW + + + RNAGLR ++G Sbjct 184 VRGIAGQLLAGESLRSITANLNARGVPSPRGGPWHKGMVRHLVLRERNAGLRVHRG---- 239 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCG---- 296 +VG+ W P++D T+ +AVL P R + +HLL+G+A CG CG Sbjct 240 -----QVVGQGTWEPILDPGTYEQVRAVLGDPARKTSTGTAAQHLLSGIARCGVCGTPVR 294 Query 297 ---NHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHD 353 N SYR G ++C V+ +++ ++ +V RLA PDAVDL + D Sbjct 295 VAWNRTVHSYRCAG------RSC--VSRRKADVDELVSRVVVARLARPDAVDLFAPDTSD 346 Query 354 AAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLR 413 A E++ L LD A + A+G + ARQ++ T + + +AR + + Sbjct 347 VRRAAA--EEVQVLRARLDNAADDYADGKIDARQLERITARLRPAVATAEARARAVDDAP 404 Query 414 VFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 + G+ LG V + LS R RAV++ L V + P + R F+P V++ W+ Sbjct 405 LLSGL-LGVADVETAWSSLSLSRRRAVVEALMAVTILPTRQGVRTFDPSTVRIEWK 459 >gi|120402458|ref|YP_952287.1| recombinase [Mycobacterium vanbaalenii PYR-1] gi|119955276|gb|ABM12281.1| Recombinase [Mycobacterium vanbaalenii PYR-1] Length=467 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 170/481 (36%), Positives = 249/481 (52%), Gaps = 34/481 (7%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLD-NDVSASTGKRRPAYEQ 65 +RA +Y RIS+D++G LGVARQ EDC L + W V + D ND+SA +GKRRP +E Sbjct 1 MRAVIYTRISDDQAGRGLGVARQLEDCQALADKLGWQVVNHFDDNDISAYSGKRRPGFEA 60 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 ML + AG+ A++ + DRL+R +LE + LAD +R+ + TV G +DL+T GR+V Sbjct 61 MLEAMKAGQFDALLCFHTDRLYRNMSDLERVIELADARRVEIRTVQGGTLDLSTSAGRMV 120 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKA---FGYLPGPNGPEPDPRTAPLV 181 AR+ GSVA E+EH R++RA Q+A G +W A FGY EP+ A + Sbjct 121 ARILGSVARQESEHSSERRKRANVQRAANG--DWVAARRPFGYTMDGEPLEPE---ATAI 175 Query 182 KQAYADILAGASLGDVCRQWNDAGAFTITGR--PWTTTTLSKFLRKPRNAGLRAYKGARY 239 + A D+L+G S+ V R WNDAG T TG+ WT T++ + L +PR A L ++G Sbjct 176 RSAITDVLSGKSVRAVARDWNDAGLAT-TGKADKWTATSVRRVLLRPRYAALVVHQG--- 231 Query 240 GPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCG--- 296 +VG W+PL+D T A L+ P R R++ +G+ CG CG Sbjct 232 ------KVVGPGSWTPLIDTDTHHGIVAYLNDPARKGKVGFERKYQGSGVYRCGVCGTPV 285 Query 297 -NHLA--GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRR-EIH 352 H++ GS + Y C V D ++ + IV RL+ PDA +LL Sbjct 286 ITHMSSGGSPNRVARRAYACPNGFHVRRQGDGLDTYVDTIVIGRLSQPDAAELLSTLSNS 345 Query 353 DAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKI-STDIVNAKIT---KLQARQQD 408 + + + + L + LA A+G ++A Q+K+ S + NA T L A Q Sbjct 346 EGVDIGALHAQRTALQARQEELASLFADGAISAPQLKLGSAKLTNALETLERDLAAATQG 405 Query 409 QERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNW 468 + + G Q+ G AELSPD V+D L V + K R F+P+ V V+W Sbjct 406 NPASALLQDVN-GVAQLEGRWAELSPDLRGKVIDQLMTVTINRSPKGLRRFDPDYVTVDW 464 Query 469 R 469 + Sbjct 465 K 465 >gi|108800781|ref|YP_640978.1| recombinase [Mycobacterium sp. MCS] gi|119869921|ref|YP_939873.1| recombinase [Mycobacterium sp. KMS] gi|119870328|ref|YP_940280.1| recombinase [Mycobacterium sp. KMS] gi|108771200|gb|ABG09922.1| Recombinase [Mycobacterium sp. MCS] gi|119696010|gb|ABL93083.1| Recombinase [Mycobacterium sp. KMS] gi|119696417|gb|ABL93490.1| Recombinase [Mycobacterium sp. KMS] Length=469 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 165/487 (34%), Positives = 239/487 (50%), Gaps = 42/487 (8%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQ 65 +RAA+Y RIS+D++GE LGV RQ + CL L + W V Y DND+SA GK RP +E Sbjct 1 MRAAIYTRISKDQTGEGLGVQRQLDACLALADRLGWAVVTRYDDNDLSAYNGKTRPGFEA 60 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 +L + G+ AV+ W DRL+R +L + +A + + TV GD+DL+TP GR++ Sbjct 61 LLDGMKRGEFDAVICWHTDRLYRSLKDLVRLLEVA--VGIDIRTVCGGDLDLSTPTGRML 118 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKA---FGYLPGPNGPEPDPRTAPLV 181 A + G VA E+EHK RQR A Q+A G W A FGY EP+ A V Sbjct 119 ATILGGVAVQESEHKGERQREANEQRAAAGR--WHTANRPFGYTMSGEALEPE---ASAV 173 Query 182 KQAYADILAGASLGDVCRQWNDAGA-FTITGRP---------------WTTTTLSKFLRK 225 +QA AD+LAG S+ V +WN+AG T+ GR W + + L + Sbjct 174 RQAAADVLAGKSIRRVAMEWNEAGLRSTLAGRERKSKDGTVVKVVDGRWNAPRVRQLLLR 233 Query 226 PRNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHL 285 PR AGLR Y+G +VGK W PL+DE T A L P RAP K R++ Sbjct 234 PRYAGLRVYRGK---------VVGKGDWEPLIDEDTHRGLVAFLSDPSRAPRTKFERKYQ 284 Query 286 LTGLAGCGKCGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVD 345 G+ CGKCG + G+ Y+C+ V ++++ + +V +RL+ PD Sbjct 285 GAGVYRCGKCGGPMRTGKPKGGRRTYLCREYSHVVRQGESLDRYVEMLVLDRLSRPDVHL 344 Query 346 LLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQAR 405 +L D + T+ E L LD A A+ + Q++ T+ + ++ + Sbjct 345 VL--AGGDRLDLPTLHARREALQARLDEAAGMFAKREIDGAQLRRITNDLRTEVAGVDKV 402 Query 406 QQDQERLRVFDGI---PLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPE 462 D R+ G+ +V LSPD V+D L V VQP + F+PE Sbjct 403 LADAARVSPVTGLISESTDRDEVQQRWEALSPDLRGKVIDELMTVTVQPAPRGTNGFHPE 462 Query 463 RVQVNWR 469 + V W+ Sbjct 463 HISVEWK 469 >gi|271963392|ref|YP_003337588.1| Site-specific recombinase DNA invertase Pin [Streptosporangium roseum DSM 43021] gi|270506567|gb|ACZ84845.1| Site-specific recombinase DNA invertase Pin [Streptosporangium roseum DSM 43021] Length=488 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 175/501 (35%), Positives = 249/501 (50%), Gaps = 57/501 (11%) Query 6 PVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYE 64 P A VY+RIS D+ G LG+ RQREDC L + + V Y DND+SA +GK RP Y Sbjct 7 PTYAIVYVRISRDKEGAGLGIDRQREDCEALAERLGFRVIAVYDDNDISAYSGKARPGYR 66 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRL 123 Q+LAD+ AG+ AV+AW DRLHR P+ELE ++++ + + + TV AG +DLATP GR+ Sbjct 67 QLLADLEAGRATAVLAWHTDRLHRSPVELEEYITVCEPRGIVTHTVKAGPIDLATPSGRM 126 Query 124 VARLKGSVAAHETEHKKARQRRAARQKAERGHPNWS---KAFGYLPGPNGPEPDPRTAPL 180 +AR G+VA E+EHK R RR Q A+ G W + FGY NG P A Sbjct 127 IARQLGAVARFESEHKSDRARRKRDQMAQAGQ--WKGGRRPFGYE--DNGVTVRPDEAAE 182 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 VKQA +L+G S+ + R WN G T TG W+T ++ L +PRNAG+ ++G G Sbjct 183 VKQASESLLSGMSMHAIVRDWNARGVKTTTGATWSTRSVRNVLTRPRNAGIMEHRGEELG 242 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 P A+W +VDE T+ + A+L P R S RR LL+G+A CG C Sbjct 243 P---------AEWPAIVDEMTWRSLCALLADPNRRTSPGSERRWLLSGIAECGICEVGGV 293 Query 301 GSYRTDGQV------------VYVCK---ACHGVAILADNIEPILYHIVAERLAMPDAVD 345 +Y G Y C+ A V A +++ + + ERL+ P A Sbjct 294 LTYLRAGTAGKNTGEDRKTAPAYRCRLDDAAKHVVRNAIHLDKYVSAVAVERLSQPGAAA 353 Query 346 LLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQV---KISTDIVNAKITKL 402 L +D A +E E L R+ + A + AR++ +++T + Sbjct 354 ELTIR-NDGGAARERAIEREAL-----RIHEQEAGEMFAAREMTRAQLATTNREIAARRA 407 Query 403 QARQQDQERLRVFDGIPLGTPQVAGMIAE-LSPDRFRAVLDVLAEVVVQPVGKSGR---- 457 + D RV P + A + E L+ D+ RAV+ + VVV P GK GR Sbjct 408 ELDLADAAAARVTALAPFASGADASQVWEDLTLDQRRAVISQVMRVVVLPAGK-GRPKGW 466 Query 458 ---------IFNPERVQVNWR 469 F+PE V++ W+ Sbjct 467 TPEYGKEWGYFDPEAVRIGWK 487 >gi|320094349|ref|ZP_08026137.1| recombinase [Actinomyces sp. oral taxon 178 str. F0338] gi|319978737|gb|EFW10292.1| recombinase [Actinomyces sp. oral taxon 178 str. F0338] Length=458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 156/474 (33%), Positives = 238/474 (51%), Gaps = 23/474 (4%) Query 1 VRYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGK- 58 +R P RAAVYLR+S D +GE L V RQR DCL++ +R W + EY+DN +SAS Sbjct 1 MRRDFPRRAAVYLRVSLDATGEHLAVDRQRADCLRIIRERGWTLTQEYVDNSLSASKRTV 60 Query 59 RRPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLAT 118 RRPAY++M+ D AG A+V WDLDRL R+P +LE ++ A+E+ L + T G+ DL+T Sbjct 61 RRPAYDRMVQDYDAGLFDALVCWDLDRLTRQPRQLEDWIERAEERGLVITTANGEADLST 120 Query 119 PQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNW-SKAFGYL-PGPNGPEPDPR 176 GR+ AR+K SVA E E K ARQ+ A Q+A G P ++ GY G PE Sbjct 121 DGGRMYARIKASVARSEVERKSARQKAANAQRARLGRPPLGTRLMGYTAKGVLIPE---- 176 Query 177 TAPLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKG 236 A +V+ + LAG SL + R AG T G W ++++ L R AG+ Y G Sbjct 177 EAKVVRGIFDSFLAGESLKGIARGLQAAGVPTRHGGRWHSSSIRTILLNERYAGIMEYMG 236 Query 237 ARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSV-RRHLLTGLAGCGKC 295 V W P+V E ++ AQ+ L P R ++ R+HL + L C +C Sbjct 237 EVLPNV-------PVTWEPIVSEDAYFLAQSRLSDPLRKTAKEGTHRKHLGSSLFRCAEC 289 Query 296 GNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAA 355 G+ + V Y C C + ++ + +V RLA PD DLL + Sbjct 290 GHGMHAF----SNVRYRCPRCE-FSRSRTQVDAYVLAVVRARLAQPDVADLL--AVDHEP 342 Query 356 EAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVF 415 E + + +++ L L+R+ + EG++ + + + + V A++T + ++ Sbjct 343 EVKELTAQIQRLRDRLERINQDYDEGIIDGLRYRTAAERVRAELTATEGKRAALSGGLSG 402 Query 416 DGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 LG P S R ++D L +V ++P + R FNP+ V + W+ Sbjct 403 TSSVLGAPDPVEAFDAASLMIQRRIIDALLDVQLKPGARGSRTFNPDSVILTWK 456 >gi|302520915|ref|ZP_07273257.1| recombinase [Streptomyces sp. SPB78] gi|302429810|gb|EFL01626.1| recombinase [Streptomyces sp. SPB78] Length=493 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 172/499 (35%), Positives = 240/499 (49%), Gaps = 56/499 (11%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQ 65 RA +Y+RIS+DR+G LGV RQREDC L W VE Y+DND+SA +GK RP Y + Sbjct 12 TRAVIYVRISQDRTGSHLGVDRQREDCEALAEHNGWEVVEVYVDNDLSAYSGKPRPDYRR 71 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 MLAD+ G V+AW DRLHR P ELE ++ L+ + + TV AGD+DL+T GR+ Sbjct 72 MLADLEDGTATVVIAWHTDRLHRSPTELEEYIDLSQRRGIDTHTVQAGDLDLSTSSGRMT 131 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNWS---KAFGY-LP-GPNGPEPDPRTAP 179 AR+ G+VA HE+EHK R RA QKA+ G W + FG+ +P G + D +T Sbjct 132 ARIHGAVARHESEHKAERVARARLQKAKAG--LWGGGIRPFGWGVPTGETQKKTDRKTGE 189 Query 180 LVKQAYAD------------------ILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSK 221 V+ D +L G SLG R D G + G+ Sbjct 190 EVEVPVLDMNKLVTEEAAALVHGHDLLLRGDSLGSWVRWLADKGLLSSRGKLIGRVEARD 249 Query 222 FLRKPRNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGR--APGRK 279 L +PRNAG+ Y+G +GK W P V A A A+L+ P R PG + Sbjct 250 LLLRPRNAGIAVYRGEE---------IGKGAWEPAVSVAKHKAVVAILEDPNRRTTPGAQ 300 Query 280 SVRRHLLTGLAGCGKCGNHL----AGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVA 335 L G G+C + +G R Y C+ HG AD ++ + ++ Sbjct 301 PKWLGSLLYQCGRGECTEFVYVTQSGGRR---HPSYRCQTSHGGGRRADKVDKYVEDVLV 357 Query 336 ERLAMPDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIV 395 ERL+ PDA DLL D + E +++E E + L LA G + Q +DI Sbjct 358 ERLSRPDAADLL-LPGPDGVDTEALQVESEQIRRRLTDLAALFGAGQIDMAQFTEGSDIA 416 Query 396 NAK---ITKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPV 452 A+ +T+ AR Q+ L +G P V L+ DR R VL L VV++P Sbjct 417 RAQLDGVTRQLARAAKQDPLLGL----VGAPDVRKAWRALALDRKRRVLRTLMTVVLRPA 472 Query 453 GK---SGRIFNPERVQVNW 468 + G F+ E +++ W Sbjct 473 RQRMPDGGYFDHEAIEITW 491 >gi|315606068|ref|ZP_07881099.1| recombinase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312350|gb|EFU60436.1| recombinase [Actinomyces sp. oral taxon 180 str. F0310] Length=458 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 154/473 (33%), Positives = 237/473 (51%), Gaps = 21/473 (4%) Query 1 VRYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGK- 58 +R P RAAVYLR+S D +GE L V RQR DCL++ +R W + EY+DN VSAS Sbjct 1 MRRDFPRRAAVYLRVSLDATGEHLAVDRQRADCLRIIRERGWTLTQEYVDNSVSASKRTV 60 Query 59 RRPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLAT 118 RRPAY++M+ D AG A+V WDLDRL R+P +LE ++ A+E+ L + T G+ DL+T Sbjct 61 RRPAYDRMVQDYDAGLFDALVCWDLDRLTRQPRQLEDWIERAEERGLIITTANGEADLST 120 Query 119 PQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNW-SKAFGYLPGPNGPEPDPRT 177 GR+ AR+K SVA E E K ARQ+ A Q+A G P ++ GY E P Sbjct 121 DGGRMYARIKASVARSEVERKSARQKAANAQRARLGRPPLGTRLMGYTA---KGELIPEE 177 Query 178 APLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGA 237 A +V+ + LAG SL + R +G T G W ++++ L R AG+ Y G Sbjct 178 ARVVRGIFDSFLAGESLKGIARGLQASGVPTRHGGRWHSSSIRTILLNERYAGIMEYMGE 237 Query 238 RYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSV-RRHLLTGLAGCGKCG 296 V W P+V E ++ AQ+ L P R ++ R+HL + L C +CG Sbjct 238 VLPNV-------PVTWEPIVSEDAYFLAQSRLSDPLRKTAKEGTHRKHLGSSLFRCAECG 290 Query 297 NHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAE 356 + + V Y C C + ++ + +V RLA PD DLL + E Sbjct 291 HGMHAF----SNVRYRCPRCE-FSRSRTQVDAYVLAVVRARLAQPDVADLL--AVDHEPE 343 Query 357 AETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFD 416 + + +++ L L+R+ + EG++ + + + + V A++T + ++ Sbjct 344 VKELTAQIQRLRDRLERINQDYDEGIIDGLRYRTAAERVRAELTTTEGKRAALSGGLSGT 403 Query 417 GIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 LG P S R ++D L +V ++P + + FNP+ V + W+ Sbjct 404 SSVLGAPDPVEAFDAASLMIQRRIIDALLDVQLKPGARGRKTFNPDSVILTWK 456 >gi|108800484|ref|YP_640681.1| recombinase [Mycobacterium sp. MCS] gi|108770903|gb|ABG09625.1| Recombinase [Mycobacterium sp. MCS] Length=460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 173/470 (37%), Positives = 239/470 (51%), Gaps = 28/470 (5%) Query 11 VYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTG-KRRPAYEQMLA 68 +Y RIS D SG+ LGV RQ D KLC +R W VE + DND SA K+RP Y ML Sbjct 7 IYCRISADASGDALGVQRQEADARKLCAERGWTVVEVFCDNDRSAYDRLKQRPRYLAMLD 66 Query 69 DITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLVARL 127 I AG+I +VAW DRLHR+ EL F+ L +E + + TV AG DL TP GR+ AR+ Sbjct 67 AIRAGEINGIVAWHPDRLHRQTRELVPFIDLVNEFGVTVETVTAGAYDLTTPSGRMNARI 126 Query 128 KGSVAAHETEHKKARQRRAARQKAERG-HPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYA 186 GSVA E+EHK R RR A G H S+ +G+L + P A +V++A A Sbjct 127 VGSVAEFESEHKSERIRRKLEANAAEGRHHGGSRPYGWLD--DRVSIHPTEAAVVREAAA 184 Query 187 DILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDA 246 +LAG S+ + R N AG T TGRPW + L +PRNAGLR + G Sbjct 185 RVLAGESVKSIARALNAAGHTTSTGRPWRDVNVRDMLVRPRNAGLRVHHG---------E 235 Query 247 IVGKAQWSPLVDEATFWAAQAVLDAPGR--APGRKSVRRHLLTGLAGCGKCGNHL----A 300 +VG +W ++ A+L P R PGR R HLL+ LA CG C + + Sbjct 236 VVGGGRWEAILPADDHHQVVAILTDPARRTTPGRDG-RIHLLSALARCGVCDEPVRVGRS 294 Query 301 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLL-RREIHDAAEAET 359 Y+ + +Y C A H + A +++ ++ H+V RLAM DA LL E D A A Sbjct 295 KPYKGVSKPIYRCMAAHVIRDQA-SVDDLVTHVVIGRLAMDDAAALLVEPERKDDAHAAA 353 Query 360 IRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIP 419 R ++ + L A A G +T Q+ I T + ++ + Q R +V G Sbjct 354 GR--IDEIQQRLGAAASAFAAGAITLPQLTIITAELRPQLDEAQTAAASPSREKVL-GDL 410 Query 420 LGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 + A + ++P R R V+D+L V + P K R FNP+ V + W+ Sbjct 411 VKAKDPAAVWEAMTPQRRRTVIDLLVAVHIMPTSKGPR-FNPDAVDIQWK 459 >gi|296128476|ref|YP_003635726.1| Resolvase domain protein [Cellulomonas flavigena DSM 20109] gi|296020291|gb|ADG73527.1| Resolvase domain protein [Cellulomonas flavigena DSM 20109] Length=461 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 167/485 (35%), Positives = 254/485 (53%), Gaps = 51/485 (10%) Query 10 AVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQMLA 68 A+Y RIS+DRSG++ GV RQ +DC +R W V EY+D+DVSA +GKRRPAYE+ML Sbjct 2 ALYARISQDRSGDEAGVTRQLKDCRAEAERRGWTVAEEYVDDDVSAYSGKRRPAYERMLR 61 Query 69 DITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRL-ALATVAGDVDLATPQGRLVARL 127 DIT G+ AVV W +DRLHRRPIELE F+++ D+ + L T++G+VDL G L+AR Sbjct 62 DITEGRRDAVVVWHMDRLHRRPIELEQFVAVCDKAGVRDLVTLSGEVDLTNGDGLLLARF 121 Query 128 KGSVAAHETEHKKARQRRAARQKAERGHPNWS--KAFGYLPGPNGPEPDPRTAPLVKQAY 185 +VAAHE+ K R +R A + AE G P + FG+ + + A V++ Sbjct 122 MSAVAAHESSTKPRRLKRKALEIAETGRPTMGGRRPFGF--AEDRITHESSEAAAVREVA 179 Query 186 ADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRD 245 A +LAG SL V ++G T++G PW T ++ + + PR G+R ++ D Sbjct 180 ARLLAGESLTSVTTWMQESGVPTVSGAPWRTHSVRQVVTNPRMWGMRVHQ---------D 230 Query 246 AIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRT 305 ++G+ W P++ Q +L P ++ RR+LL+G+ CGKCG + + R Sbjct 231 QVIGEGTWEPILTPEQGERLQRLLLDP-ARRTNRTARRYLLSGMLTCGKCGARMVSAPR- 288 Query 306 DGQVVYVC------KACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAET 359 +G Y C + C G+ ++AD +E ++ V +RL P D L HD AE Sbjct 289 EGVRRYACRTGPDQRGCGGIYVVADPLERLVAEAVLQRLDSPQMHDALTGNEHDDAEVAA 348 Query 360 IR----------LELETLY--GELDRLAVERAEGLLTAR--QVKISTDIVNAKITKLQAR 405 + L+L ++ GE++R+ ++RA +T R + + N + ++ Sbjct 349 LAAKVQDDERRLLDLADMFASGEIERVGMKRAREQITPRLEANRRALAAANGRDQVVEYA 408 Query 406 QQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRI-FNPERV 464 + E +DG+ L + QVA V VLA V P + GR F+P RV Sbjct 409 GRGAELREAWDGLDL-SRQVA------------VVKAVLAGATVLPATQRGRRGFDPGRV 455 Query 465 QVNWR 469 +WR Sbjct 456 VPDWR 460 >gi|184200569|ref|YP_001854776.1| putative recombinase [Kocuria rhizophila DC2201] gi|183580799|dbj|BAG29270.1| putative recombinase [Kocuria rhizophila DC2201] Length=461 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 163/475 (35%), Positives = 232/475 (49%), Gaps = 31/475 (6%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPV-EYLDNDVSASTGKRRPAYEQML 67 A +Y RIS D G LGV RQ EDC + R W V EY++ND SA+ K RP Y+QML Sbjct 3 AVIYARISRDAEGTSLGVNRQLEDCRQAASARGWTVVHEYVENDTSATRAKVRPQYQQML 62 Query 68 ADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARL 127 D+ G A++ WD+DRL R P ELE + LAD +AL ++ G++DLATPQGR+ AR+ Sbjct 63 RDLANGIAGALIVWDVDRLTRTPRELEDVIDLADAHSIALVSIGGEIDLATPQGRMTARI 122 Query 128 KGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYL-----PGPNGPEPDPRTAPLVK 182 KGSVA HET+ R RR R++AE+G PN FG+ G D AP + Sbjct 123 KGSVARHETDQMARRIRRKQRERAEQGLPNGLCPFGWRRVYDDQGRRAGSRDVAYAPEAE 182 Query 183 Q---AYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARY 239 Q + +LAG S+ + +WN G T G W T T+ + LR+ NAGLR +KG + Sbjct 183 QIRDGVSRLLAGESVRSIAMRWNTEGLPTQRGNGWRTGTVRQTLRRAANAGLREHKGEIF 242 Query 240 GPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHL 299 P D PL+ E +A+L PGR + +LLTG+A CG+CG + Sbjct 243 -PSD--------VIEPLITEDELHRVRALLADPGRRVQHGTTPAYLLTGIAECGRCGGKM 293 Query 300 -----AGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDA 354 G + Y C+ C VA ++ ++ + RL PD ++ L D Sbjct 294 RYLKPRGRHNIPS---YGCRDCTRVARSMGLVDAVVEGAILGRLQRPDVLETL--PTMDP 348 Query 355 AEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRV 414 + +R + E L +L A G +T Q+ T V ++ + +A+ D Sbjct 349 KRGDDLRSQAEALEAKLSEAADLFTAGTITGEQLSRITAGVRPQLERTRAQLADLTPASA 408 Query 415 FDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 I A L R ++D L V + P G GR +PE V++ W+ Sbjct 409 AAAIAGDDAVARWEDATLLVK--REIVDTLMTVTILPAG-PGRGRDPESVKIEWK 460 >gi|119869623|ref|YP_939575.1| recombinase [Mycobacterium sp. KMS] gi|119695712|gb|ABL92785.1| Recombinase [Mycobacterium sp. KMS] Length=460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 171/470 (37%), Positives = 237/470 (51%), Gaps = 28/470 (5%) Query 11 VYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTG-KRRPAYEQMLA 68 +Y RIS D SG+ LGV RQ D KLC +R W VE + DND SA K+RP Y ML Sbjct 7 IYCRISADASGDALGVQRQEADARKLCAERGWTVVEVFCDNDRSAYDRLKQRPRYLAMLD 66 Query 69 DITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLVARL 127 I AG+I +VAW DRLHR+ EL F+ L +E + + TV AG DL TP GR+ AR+ Sbjct 67 AIRAGEINGIVAWHPDRLHRQTRELVPFIDLVNEFGVTVETVTAGAYDLTTPSGRMNARI 126 Query 128 KGSVAAHETEHKKARQRRAARQKAERG-HPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYA 186 GSVA E+EHK R RR A G H S+ +G+L + P A +V++A A Sbjct 127 VGSVAEFESEHKSERIRRKLEANAAEGRHHGGSRPYGWLD--DRVSIHPTEAAVVREAAA 184 Query 187 DILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDA 246 +LAG S+ + R N G T TGRPW + L +PRNAGLR + G Sbjct 185 RVLAGESVKSIARALNAGGHTTSTGRPWRDVNVRDMLVRPRNAGLRVHHG---------E 235 Query 247 IVGKAQWSPLVDEATFWAAQAVLDAPGR--APGRKSVRRHLLTGLAGCGKCGNHL----A 300 +VG +W ++ A+L P R PGR R HLL+ LA CG C + + Sbjct 236 VVGGGRWEAILPADDHHQVVAILTDPARRTTPGRDG-RIHLLSALARCGVCDEPVRVGRS 294 Query 301 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLL-RREIHDAAEAET 359 Y+ + +Y C A H + A +++ ++ +V RLAM DA LL E D A A Sbjct 295 KPYKGVSKPIYRCMAAHVIRDQA-SVDDLVTRVVIGRLAMDDAAALLVEPERKDDAHAAA 353 Query 360 IRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIP 419 R ++ + L A A G +T Q+ I T + ++ + Q R +V G Sbjct 354 GR--IDEIQQRLGAAASAFAAGAITLPQLTIITAELRPQLDEAQTAAASPSREKVL-GDL 410 Query 420 LGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 + A + ++P R R V+D+L V + P K R FNP+ V + W+ Sbjct 411 VKAKDPAAVWEAMTPQRRRTVIDLLVAVHIMPTSKGPR-FNPDAVDIQWK 459 >gi|284033432|ref|YP_003383363.1| Recombinase [Kribbella flavida DSM 17836] gi|283812725|gb|ADB34564.1| Recombinase [Kribbella flavida DSM 17836] Length=459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 161/478 (34%), Positives = 232/478 (49%), Gaps = 49/478 (10%) Query 8 RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTG-KRRPAYEQ 65 RAA+YLRIS D +GE L V RQREDCLKLC R W V E++DN +SAS K+RP Y+ Sbjct 7 RAALYLRISLDATGEMLAVERQREDCLKLCHDRGWSVVAEFVDNSISASDARKKRPGYDA 66 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVA 125 + + AG A+V WDLDRL R+P +LE ++ A L + T G+ DL+T G L A Sbjct 67 LASAYDAGGFDALVCWDLDRLTRQPRQLEDWIDRARSGGLVIVTANGEADLSTDGGMLFA 126 Query 126 RLKGSVAAHETEHKKARQRRAARQKAERGHPNWS-KAFGYLPGPNGPEPDPRTAPLVKQA 184 R+K +VA E + K ARQ RA +Q+A+ G P + GY E + R +V++ Sbjct 127 RIKLAVARGEVDRKSARQTRALQQRADLGKPPLGVRLTGYTSKGVVIEDEAR---IVRRI 183 Query 185 YADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDR 244 + + + G SL + + G T G W +++++ LR PR AGL YKG G Sbjct 184 FQEFINGESLKGIAGRLQADGIETRRGGRWNSSSIATILRNPRYAGLAIYKGQATGK--- 240 Query 245 DAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSV-RRHLLTGLAGCGKCGNHLAGSY 303 + QW PL+ E F Q+ L P R + RRHL +GL C CG+ + Y Sbjct 241 -----QGQWEPLISEDQFALVQSRLADPRRKTNKVGTHRRHLGSGLFLCCVCGSRI---Y 292 Query 304 RTDGQVVYVCKACHGVAILADNIEPI---LYHIVAERLAMPDAVDLLRREIHDA-----A 355 G C L +I P+ + ++ RL + D + +R+ ++ A Sbjct 293 AWSGDRYRCPNTC-----LVRSIAPVDRYVNAVIRARLGLTDVLARMRKAPAESAAPLEA 347 Query 356 EAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVF 415 EA +R LE + G+ D G + R+ +TD V ++ Q + +L V Sbjct 348 EARELRARLERIEGDYD-------AGHIDGRRYSAATDKVRIEL------QAIERKLAVI 394 Query 416 DGIP-----LGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNW 468 G L P A L+ R VLD L VV++P R F+P V + W Sbjct 395 SGDAPLVDLLNRPDPAAAFDNLTLMAQRTVLDSLMTVVLRPGKHGSRTFDPATVPILW 452 >gi|284991973|ref|YP_003410527.1| resolvase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065218|gb|ADB76156.1| Resolvase domain protein [Geodermatophilus obscurus DSM 43160] Length=484 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 173/498 (35%), Positives = 240/498 (49%), Gaps = 51/498 (10%) Query 5 TPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWV-----PVEYLDNDVSASTGKR 59 TP RAA+Y+RIS+DR G+ LGV RQ +DC L + +W PV Y DND+ AST R Sbjct 5 TPQRAAIYVRISDDREGQGLGVTRQEQDCRALTERLEWTLHPHRPV-YSDNDIGASTKSR 63 Query 60 --RPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDL 116 RP + ++LA + AG + ++ + RL RRP+E E +L ++ + LA+V +G VDL Sbjct 64 KARPEFAELLAAVRAGTVDGILYYSTSRLTRRPMEYEGIKALVEDTGVRLASVVSGQVDL 123 Query 117 ATPQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWS--KAFGYLPGPNGPEPD 174 T GRL+ + A E E R RR Q E G P+ + + FGY PG G + D Sbjct 124 TTADGRLLGGIMAQFDAAEAERISERVRRTFVQHREAGRPHTTGTRPFGYKPG--GIKVD 181 Query 175 PRTAPLVKQA---YADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGL 231 A ++ A D ASLGDV R W AG T+TGRPW+ +SK L +PRNAGL Sbjct 182 AVEAAAIRDAVEWITDENVQASLGDVVRAWTAAGLETVTGRPWSRVMVSKVLTRPRNAGL 241 Query 232 RAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDA-PGRAPGRKSVRRHLLTGLA 290 Y G IVG+ + ++ E A + L A G R S R+HLL+GL Sbjct 242 VEYLG---------EIVGRGSFDAILTEDELRAVREALAARSGLVTARYSRRQHLLSGLI 292 Query 291 GCGKCGNHLAGSYRTDGQ-------VVYVCKACHGVAILADNI---EPILYHIVAERLAM 340 CG CG + S R D + V K G + N+ E + V RLA Sbjct 293 YCGVCGGRMKVSARRDAEGAVRADSFVSCVKDNGGCGHVKRNLRLAEAFILGAVERRLAD 352 Query 341 PDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKIT 400 A + A EA + E +TL R VER + L+ + D V I Sbjct 353 ATAFADPDDDSEAAQEAARLTAERDTL-----RAKVERLQKLMLDDPDFTAEDFV-PMIR 406 Query 401 KLQARQQDQERLRVFDGIP-----LGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKS 455 KL+ R ++ E L +P LG +A A +R + ++A++V+ P+GK Sbjct 407 KLRDRIREVEALLADVELPARRDALGEDPLADWQAGGFDERREVLEALVAQIVLHPIGKV 466 Query 456 G----RIFNPERVQVNWR 469 G R PE Q+ WR Sbjct 467 GPARSRAMVPETTQIIWR 484 >gi|108802532|ref|YP_642728.1| recombinase [Mycobacterium sp. MCS] gi|119855361|ref|YP_935964.1| recombinase [Mycobacterium sp. KMS] gi|108772951|gb|ABG11672.1| Recombinase [Mycobacterium sp. MCS] gi|119698078|gb|ABL95149.1| Recombinase [Mycobacterium sp. KMS] Length=479 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 167/482 (35%), Positives = 240/482 (50%), Gaps = 42/482 (8%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQML 67 AA+Y RIS D G LGVARQ +DC KL R W V EY+DNDVSA +GK R Y +ML Sbjct 16 AAIYARISADVEGTGLGVARQVQDCRKLAADRGWQVGDEYVDNDVSAYSGKPRREYARML 75 Query 68 ADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRL-ALATVAGDVDLATPQGRLVAR 126 D+ +G AV+ ++LDRLHRRP+ELE F++L + + +ATV D+DL G +AR Sbjct 76 DDLKSGARDAVIVYNLDRLHRRPVELEEFVALCESVGVRDVATVTADIDLGNDDGLFMAR 135 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNWS-KAFGYLPGPNGPEPDPRT-----APL 180 + + AA E+ K AR RR Q AE+G P+ S + FGY EPD T A + Sbjct 136 IFAAFAAKESGRKSARIRRKMLQNAEQGLPHGSARPFGY-------EPDKITVCSKEAKV 188 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 +++ A LAGAS+ + NDAG + W TT + + L R AGLR + G G Sbjct 189 IREMVARYLAGASIRSLTIWLNDAGLAPAVAKSWQTTAVRQILASGRIAGLREHHGEVIG 248 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 P AI+ A+ ++ T A++V RAP R +LL+GL CG+CGN L Sbjct 249 PAAWPAIITHAERDRILARMT---ARSVTKT--RAP-----RTYLLSGLLRCGRCGNRLF 298 Query 301 GSYRTDGQVV----YVC------KACHGVAILADNIEPILYHIVAERLAMPDAVDLLRRE 350 R + YVC C + ++A +E +L V RL P ++L + Sbjct 299 SQARHNNPQNRVRRYVCLKGPDHGGCGRLTVVALPVEELLTDAVLTRLDSPHLANVLAGK 358 Query 351 IHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQ---ARQQ 407 A+ + +LE LD LA A+G +TAR+ + D + +IT + A Sbjct 359 ASVDADVAALSAQLEADTTRLDELAALYAQGAVTAREWIAARDPITDRITATRRDIAAAT 418 Query 408 DQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSG-RIFNPERVQV 466 D + G + G +L DR + ++ + + V G G R + RV+ Sbjct 419 DTTNVTELAGT---GHLLRGQWDDLDIDRQQTIIKAVLDHAVIAAGTPGARSLDINRVRP 475 Query 467 NW 468 +W Sbjct 476 HW 477 >gi|296129084|ref|YP_003636334.1| Resolvase domain protein [Cellulomonas flavigena DSM 20109] gi|296020899|gb|ADG74135.1| Resolvase domain protein [Cellulomonas flavigena DSM 20109] Length=467 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 172/489 (36%), Positives = 258/489 (53%), Gaps = 59/489 (12%) Query 10 AVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQMLA 68 AVY RIS+DRSGE+LGV RQ DC +R W V EY+D+D SA +GK RP+Y++MLA Sbjct 8 AVYARISQDRSGEELGVRRQLADCRAEAARRGWTVAEEYIDDDSSAYSGKVRPSYDRMLA 67 Query 69 DITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLA-LATVAGDVDLATPQGRLVARL 127 D+ G+ AVV W +DRLHRRPIE E F+ + + + T++GDVDLA G LVAR+ Sbjct 68 DLAEGRRDAVVVWHMDRLHRRPIEFERFVEVCTRAGVQDVVTLSGDVDLAKGDGLLVARV 127 Query 128 KGSVAAHETEHKKARQRRAARQKAERGHPNWS--KAFGYLPGPNGPEPDPRTAPLVKQAY 185 + AA E++ K+ R RR A + AE G P + FG+L + P AP+V++ Sbjct 128 VAAFAASESDAKRRRGRRKALEIAESGRPMMGGPRPFGFL--DDRVTHHPAEAPVVRELA 185 Query 186 ADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRD 245 A LAG +L + D+G T+ G W TTT+ + L PR G+R ++G Sbjct 186 ARALAGETLISLSTWLQDSGVRTVGGNEWRTTTVRQLLTNPRAWGMRVHQG--------- 236 Query 246 AIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRT 305 ++GKA W P++ + +L P R R S RR+LLTG+ CGKCG+ L + + Sbjct 237 QVIGKATWEPIITPEDGERLRRLLLDPARRTNR-SARRYLLTGMLRCGKCGSPLRSAPK- 294 Query 306 DGQVVYVC------KACHGVAILADNIEPILYHIVAERLAMPDAVDLLR---------RE 350 DG+ Y C + C GV I A+ +E + V RL P ++L R Sbjct 295 DGKRRYGCAMGPDHRGCGGVFIYAEMLERFVTEAVLYRLDSPVMDEVLTGDGDNDERARA 354 Query 351 IHDAAEAETIRL-ELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQAR---- 405 + +A +A+T +L +L T++ + + V +AE L +++ + A+ ++ R Sbjct 355 LGEAIKADTDQLDDLATMWADGE---VSKAEWLKARGRIESRLEASRAEFYRVTHRDAVA 411 Query 406 ----QQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRI-FN 460 + D+ R + +DG+ + QVA + A VLA+ + P GR + Sbjct 412 PYLGRGDELRAQ-WDGLAF-SRQVAIVKA------------VLAQATILPAAVPGRHGLD 457 Query 461 PERVQVNWR 469 PERV+ WR Sbjct 458 PERVEPEWR 466 >gi|326383241|ref|ZP_08204929.1| Recombinase [Gordonia neofelifaecis NRRL B-59395] gi|326197991|gb|EGD55177.1| Recombinase [Gordonia neofelifaecis NRRL B-59395] Length=457 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 159/471 (34%), Positives = 231/471 (50%), Gaps = 25/471 (5%) Query 4 TTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKR-RP 61 T RAA+Y RIS D SG+ LGV RQ ED + R W V + DN +SAS ++ RP Sbjct 4 TNARRAAIYTRISLDASGDGLGVTRQEEDARAIVSSRGWEVAGVWSDNSISASDARKVRP 63 Query 62 AYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQG 121 Y+ ++ AG A+V +DLDRL R+P +LE ++ A+ LAL T G+ DL T G Sbjct 64 GYDALVKAYDAGAFDALVCYDLDRLTRQPRQLEDWIDAAEASGLALVTTNGEADLTTDAG 123 Query 122 RLVARLKGSVAAHETEHKKARQRRAARQKAERGHP--NWSKAFGYLPGPNGPEPDPRTAP 179 RL AR+K +VA E E K ARQ+RA Q+A G + GY G E + A Sbjct 124 RLFARIKAAVARAEVERKSARQKRAEIQRARSGKAPVKGHRLTGYELGGRVIESE---AA 180 Query 180 LVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARY 239 +V++ +A+ LAG ++ + + G T +GR W T++ L+ PR G Y G Sbjct 181 IVRRIFAEFLAGGAVHGIATRLETEGVPTRSGRRWNPATVTTILKNPRYVGRVVYDGQVL 240 Query 240 GPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSV-RRHLLTGLAGCGKCGNH 298 + +VG QW P++D A F QA + P R + S R+HL +GL C +CG Sbjct 241 -----EGVVG--QWEPIIDSADFDLVQAKFNDPARKALKVSTARKHLGSGLYRCAECG-- 291 Query 299 LAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAE 358 G + G Y C V+ L ++ + ++AERL DA +LL E A+ E Sbjct 292 --GPMKLKGGRSYQC--LGHVSRLQAVVDDYVLEVIAERLRQADASELLAPE---EADLE 344 Query 359 TIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGI 418 + E E L + + E L+ AR + + A++T+L + G+ Sbjct 345 PLVAEAERLRSRIAVVDEEYMADLIDARLRRDKVARLQAELTELDGKLASHRTGSALGGV 404 Query 419 PLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 L +P A RA++D LAEV + K +F+PE V V WR Sbjct 405 -LASPDPAAAFLSSGLMAQRAIIDSLAEVRLHRGVKGRNVFDPESVSVIWR 454 >gi|300781577|ref|ZP_07091431.1| recombinase [Corynebacterium genitalium ATCC 33030] gi|300533284|gb|EFK54345.1| recombinase [Corynebacterium genitalium ATCC 33030] Length=503 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 172/517 (34%), Positives = 241/517 (47%), Gaps = 72/517 (13%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGK-RRPAYE 64 RAA+YLRIS D + + L + RQR+DC L QR W V Y+D +SAS RP Y+ Sbjct 3 TRAAIYLRISLDAAMDGLAIDRQRQDCEALAEQRGWDVVHTYVDQSISASKKDVDRPDYD 62 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLV 124 M+A G+I A++ WDLDRL R+P +LE ++ A+E+ L L T GD DLAT GR+ Sbjct 63 AMVASFERGEIDAIICWDLDRLTRQPWQLEEWIDRAEEQGLKLVTANGDADLATDGGRMY 122 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERG--HPNWSKAFGYLPGPNGPEPDPRTAPLVK 182 AR+K +VA E E K RQ RA +Q+AE+G + + GY + E P A V Sbjct 123 ARIKAAVARGEIERKSMRQSRAQQQRAEQGRWYSGGVRPIGYT---STGEIIPSEAAAVL 179 Query 183 QAYADILAGASLGDVCRQW---NDAGAFTI-----------------------------T 210 + + G S+ D+ R N G I Sbjct 180 GMFRAVERGNSMRDIARALSGVNQPGLPDIPTTPRHMHTVVTERNARRRAAGQEEKPVPD 239 Query 211 GRPWTTTTLSKFLRKPRNAGLRAYKGA----------RYGPVDRDAIVG---KAQWSPLV 257 +PW T+L LR P AG YK A R + RD G K QW P+V Sbjct 240 AQPWAYTSLHSILRNPVYAGYSTYKKAERKGVKNKYRRVTHIVRDPDTGEPVKGQWEPIV 299 Query 258 DEATFWAAQAVLDAPGRAPG--RKSVRRHLLTGLAGCGKCGNHLAGSYRTDGQVVYVCKA 315 +W Q VLD P R R++ RRHL +GL C +CGN + RT Y C A Sbjct 300 TPDLWWRVQNVLDDPDRLTNKERRNTRRHLGSGLYVCDECGNPV----RTHAD-RYRCAA 354 Query 316 CHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELETLYGELDRLA 375 C + +++ + ++ RL D DLL D E I EL L +L R+ Sbjct 355 CG--LVRTHSVDDFVLAVIRARLGRDDLADLL--PTADDDEVNAIDDELAELRAKLARVQ 410 Query 376 VERAEGLLTARQVKISTDIVNAKITKLQARQQDQERL----RVFDGIPLGTPQVAGMIAE 431 + E L+ AR +K + + +I KL+ R+ RL + D +P A AE Sbjct 411 ADYDEELIEARDLKRARNRYEPQIEKLETRRA---RLAGASALLDTTGYASPVDAFDNAE 467 Query 432 LSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNW 468 L+ R V++ L +V ++ + + FNPE VQ+ W Sbjct 468 LAVQ--RRVINTLCQVRLRRGVRGSKTFNPESVQIVW 502 >gi|296164237|ref|ZP_06846829.1| recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900412|gb|EFG79826.1| recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=479 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 168/484 (35%), Positives = 238/484 (50%), Gaps = 44/484 (9%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQML 67 AA+Y RIS D G LGV RQ EDC KL R W V EY+DNDVSA +GK R Y +ML Sbjct 16 AAIYARISADVEGTGLGVTRQLEDCRKLAADRGWPVGGEYVDNDVSAFSGKPRRQYARML 75 Query 68 ADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRL-ALATVAGDVDLATPQGRLVAR 126 AD+ +G V+ ++LDRLHRRP+ELE F++L + + +ATV D+DL G +AR Sbjct 76 ADLESGARDGVIVYNLDRLHRRPVELEEFVALCESVGVRDVATVTADIDLGNDDGLFMAR 135 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNWS-KAFGYLPGPNGPEPDPRT-----APL 180 + + AA E+ K AR RR Q AE G P+ S + FGY E D T A + Sbjct 136 IFAAFAAKESGRKSARIRRKMLQNAEHGLPHGSVRPFGY-------ESDKVTVRCDEAAV 188 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 V++ LAGAS+ + ND+G + W T+ + + L R AGLR + G Sbjct 189 VREMVDRYLAGASIRSLTMWLNDSGVAPAASKAWRTSAVRQILCSGRIAGLREHHG---- 244 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGR-KSVRRHLLTGLAGCGKCGNHL 299 ++G+A W ++ Q + GRA + ++ R +LL+GL CG+CGN L Sbjct 245 -----QVIGEAAWPAII--TPVQRDQVLARMAGRALTKTRAPRTYLLSGLLRCGRCGNRL 297 Query 300 AGSYRT---DGQV-VYVCKA------CHGVAILADNIEPILYHIVAERLAMPDAVDLLRR 349 R D +V YVC + C + ++A +E +L V RL P D L Sbjct 298 YSQARHVNPDNRVRRYVCLSGPDQGGCGRLTVVAHPVEELLTDAVLTRLDSPALADALAG 357 Query 350 EIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQ---ARQ 406 + A+ + +L+T LD LA A G +TAR+ + D + A+I + + A Sbjct 358 KASVDADVAALSAQLDTDTTRLDELAALYANGTVTAREWIAARDPITARIAETRRAIAAA 417 Query 407 QDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVL-DVLAEVVVQPVGKSGRIFNPERVQ 465 D ++ G Q G L DR +AV+ VL V+ P R + RV Sbjct 418 TDTTDVQELAGTGRLLRQQWG---GLDIDRQQAVIKSVLDHAVIAPGTPGSRSLDIGRVL 474 Query 466 VNWR 469 WR Sbjct 475 PVWR 478 >gi|118462904|ref|YP_882962.1| integrase/recombinase [Mycobacterium avium 104] gi|118164191|gb|ABK65088.1| integrase/recombinase [Mycobacterium avium 104] Length=479 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 167/483 (35%), Positives = 239/483 (50%), Gaps = 42/483 (8%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQML 67 AA+Y RIS D G LGVARQ EDC KL +R W + EY+DNDVSA +GK R Y +ML Sbjct 16 AAIYARISADVEGTGLGVARQLEDCRKLAAERGWPIGDEYVDNDVSAYSGKPRREYARML 75 Query 68 ADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRL-ALATVAGDVDLATPQGRLVAR 126 D+ +G AV+ ++LDRLHRRP+ELE F++L + + +ATV D+DL G +AR Sbjct 76 DDLKSGARDAVIVYNLDRLHRRPVELEDFVTLCESVGVRDVATVTADIDLGNDDGLFMAR 135 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNW-SKAFGYLPGPNGPEPD-----PRTAPL 180 + + AA E+ K AR RR Q AE+G P+ ++ FGY EPD P A + Sbjct 136 IFAAFAAKESGRKSARIRRKMLQNAEKGLPHGPARPFGY-------EPDKITLRPEEAKI 188 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 V++ LAGAS+ + +D G + W TTT+ L R AGLR + G G Sbjct 189 VREMVDRYLAGASIRSLTIWLSDTGVAPPASKSWQTTTVRNILASGRIAGLREHHGEVIG 248 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 AI+ + ++ T A++V RAP R +LL+G+ CG+CGN L Sbjct 249 AAAWPAIITAGERDRILARMT---ARSVTKT--RAP-----RTYLLSGMLRCGRCGNRLF 298 Query 301 GSYRTDGQVV----YVC------KACHGVAILADNIEPILYHIVAERLAMPDAVDLLRRE 350 R + YVC C + ++A +E +L V RL P L Sbjct 299 SQARHNNPTNRVRRYVCLKGPDHGGCGRLTVVALPVEELLTDAVLTRLDSPQLAGALAGR 358 Query 351 IHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQ---ARQQ 407 A+ + +LE LD LA AEG ++AR+ + D + +I + + A+ Sbjct 359 SSVDADVAALAAQLEADQARLDELAGLYAEGAVSAREWIAARDPITDRIARARRDIAKAT 418 Query 408 DQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVL-DVLAEVVVQPVGKSGRIFNPERVQV 466 D V D + G + G +L DR +A++ VL V+ P R + RVQ Sbjct 419 DTS--AVMDLVGCGE-VLRGQWDDLDIDRQQAIIKSVLDHAVIAPGTPGSRKLDINRVQP 475 Query 467 NWR 469 +WR Sbjct 476 HWR 478 >gi|296394362|ref|YP_003659246.1| resolvase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181509|gb|ADG98415.1| Resolvase domain protein [Segniliparus rotundus DSM 44985] Length=476 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 160/491 (33%), Positives = 239/491 (49%), Gaps = 40/491 (8%) Query 1 VRYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKR 59 +R + RA YLRIS D+ G +LGV RQRED K ++ W V EY+DND+SA +G Sbjct 3 IRAESTKRAGSYLRISYDQEGLELGVDRQREDNSKKAAEKGWAVAREYVDNDLSAYSGVA 62 Query 60 RPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRL-ALATVAGDVDLAT 118 RP +EQM+ DI G I A+V W+ DRL R P ELE + + +AT+ D+DL Sbjct 63 RPGFEQMVEDIRDGVIDAIVVWNFDRLIRIPSELETLSKVCAAAGVRQVATMTADIDLGN 122 Query 119 PQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNW-SKAFGYLPGPNGPEPDPRT 177 G +AR+ + AA E+ K AR +R Q A+ G P+ S+ FGY E D T Sbjct 123 DDGLFMARIFAAWAAKESGRKSARIKRKWEQNAKAGLPHGPSRPFGY-------EQDKIT 175 Query 178 -----APLVKQAYADILAGASLGDVCRQWNDAGAFTITGRP-WTTTTLSKFLRKPRNAGL 231 A ++++ + +AG S+ + N+ G T TG+ WT +T+ + L PR AGL Sbjct 176 VRESEAQVIRELASRFVAGESVRGLANWLNETGMPTATGKAQWTISTVRRILLSPRIAGL 235 Query 232 RAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRA-PGRKSVRRHLLTGLA 290 R + G IVG A W P++ A Q + RA GR++ R HLL+GL Sbjct 236 REHCG---------EIVGDAMWEPIIGLAE--REQVLAKFAARAVSGRRAPRTHLLSGLL 284 Query 291 GCGKCGNHLAGSYRTDGQVV-----YVC------KACHGVAILADNIEPILYHIVAERLA 339 CGKCG L S RT + Y+C +C + ++A+ +E ++ V + L Sbjct 285 RCGKCGYTLRSSSRTPHDISNRRRRYICVLFPARDSCGKLTVVAEPVEELITRAVLDLLD 344 Query 340 MPDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKI 399 P+ + + + E + L +L+ LA ++ +T R+ + D + A+I Sbjct 345 SPELAKKMAGKESEDGETAALSEALTMDQLQLEELAQLYSQRTITIREWIAARDPIQARI 404 Query 400 TKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVL-DVLAEVVVQPVGKSGRI 458 + R + G ++ G ELS DR AV+ VL V+ P + R Sbjct 405 RDAERRLAQATQTTALTGFAGRGEELRGQWEELSLDRRCAVVKSVLDHAVIAPGVRGART 464 Query 459 FNPERVQVNWR 469 + RVQ WR Sbjct 465 LDIGRVQPVWR 475 >gi|88856348|ref|ZP_01131007.1| integrase, putative [marine actinobacterium PHSC20C1] gi|88814432|gb|EAR24295.1| integrase, putative [marine actinobacterium PHSC20C1] Length=480 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 155/496 (32%), Positives = 242/496 (49%), Gaps = 55/496 (11%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQ 65 +RA +Y RIS D +G++LGV RQ+ DC ++ W + Y+DND+SAS+G RRP Y++ Sbjct 1 MRAGIYCRISLDSAGDELGVERQKADCSAETERQGWTIAGYYVDNDISASSGVRRPEYQR 60 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVA 125 ML D +G I A+V +D+ RL R P ELE + LA+ + LA V+G V+L+TP GRL+A Sbjct 61 MLKDAASGAIDAIVVYDISRLTRTPRELEDIIILAERHNVGLANVSGSVNLSTPDGRLMA 120 Query 126 RLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYL--------PGPNGPE----P 173 R G+ A +E E R R +KA+RG P+ +G++ P G Sbjct 121 RTMGTFARYEVEQLSKRLTRKFLEKAQRGEPHGYAPYGFMRIDPVDEKGVPTGAARRDLA 180 Query 174 DPRTAPLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRA 233 P A +V++A +LA SL + +N G W +T L + L + NAGLR+ Sbjct 181 HPEHAVIVREAARRVLALESLRSITADFNTRGIPGPKAGKWNSTILRQILLRSTNAGLRS 240 Query 234 YKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPG-RAPGRKSVRRHLLTGLAGC 292 Y+G ++G + PL DE A+L P R+ S ++LL+G+A C Sbjct 241 YQG---------KVIGPSTSEPLYDEDIHARLVALLRDPTRRSNSAGSAPQYLLSGIALC 291 Query 293 GKCGNHLAGSYRTDGQVV--------------YVCKACHGVAILADNIEPILYHIVAERL 338 G CG + R G++V Y C AC V + D+++ ++ V RL Sbjct 292 GLCGGAM---RRQIGRIVTSKRTGRTKNQPSSYGCSACFKVRRIQDHVDQVVTSAVVARL 348 Query 339 AMPDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQV-KISTDIVNA 397 + PDA + + D+A A +ET + A A + A Q+ +++ D+ Sbjct 349 SQPDARQIF--AVGDSAAAAAAHSRIETANAKAAEAASMFANDEIDAGQLRRVTADLRAV 406 Query 398 KITKLQARQQDQERLRVFDGIPLGTPQVAGMIAE----LSPDRFRAVLDVLAEVVVQPVG 453 + A ++D E R + T V G +A L R +++ L + + P G Sbjct 407 R----SAAERDLETARPRSAL---TDLVVGDVATGWDALQISSQRDIVNTLMVITILPTG 459 Query 454 KSGRIFNPERVQVNWR 469 G F+P+ V + WR Sbjct 460 -GGLAFDPQSVAIEWR 474 >gi|111219778|ref|YP_710572.1| putative integrase/recombinase [Frankia alni ACN14a] gi|111147310|emb|CAJ58959.1| putative integrase/recombinase [Frankia alni ACN14a] Length=478 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 160/465 (35%), Positives = 233/465 (51%), Gaps = 42/465 (9%) Query 8 RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYL--DNDVSASTGKRRPAYEQ 65 R Y+RIS DR G LGVARQ D L R +P + DNDVSA + KRRP YE+ Sbjct 18 RPVGYVRISLDREGAGLGVARQTAD-LNDVADRLGLPRPEVVTDNDVSAYSKKRRPGYEE 76 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 +LA I +G+ ++ W +DRL R P ELE + LA+ L + TV G VDL+T +GRL Sbjct 77 VLAGIASGRWNVLLVWHVDRLTRSPKELEEIVDLANRTGLRIETVKGGRVDLSTGEGRLH 136 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERG--HPNWSKAFGYLPGPNGPEPDPRTAPLVK 182 AR+ G +A +E+EH+ R RR Q AE G H + FGY P+G P A +++ Sbjct 137 ARILGGLARYESEHRSDRVRRKMLQNAEAGLPHGGMRRPFGY--EPDGMTVRPAEAEVIR 194 Query 183 QAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPV 242 A ++AG L + + NDAG T G W+++TL L R AG R ++G Sbjct 195 WAVGGVIAGRPLRALVAELNDAGVATSQGARWSSSTLRGILVHGRVAGFRVHQG------ 248 Query 243 DRDAIVGKAQWSPLVDEATFWAAQAVLDAPGR--APGRKSVRRHLLTGLAGCGKCGNHLA 300 I+G A W +VD A + +AVL P R +PG K R LL+G+A CG+C + Sbjct 249 ---RILGPAAWPAIVDVARWELCRAVLTDPARRSSPGNKPNR--LLSGIAVCGRCAGAMR 303 Query 301 GSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREI----HDA-A 355 GQ +Y C++ + + D ++ ++ V LA D V ++ HD A Sbjct 304 SGGNRAGQQMYRCRSQNHLRRRGDLVDDVVTRFVVGWLAR-DGVTFDVPDVAVPTHDLRA 362 Query 356 EAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVF 415 A+ +RL + + L G T +S D + + +L+ + +D ER Sbjct 363 RADEVRLRISQVEDAL--------VGDPTDDLRDVSVDGLKRNLARLRGKLEDLERDEKL 414 Query 416 DGIPLGTPQVAGMIAELSP----DRFRAVLDVLAEVVVQPVGKSG 456 +P + G+ AE P DR R+++D L +V V P K G Sbjct 415 TVLP---SALHGVTAENFPGLPLDRRRSIVDYLCKVTVLPTSKGG 456 >gi|111222235|ref|YP_713029.1| hypothetical protein FRAAL2816 [Frankia alni ACN14a] gi|111149767|emb|CAJ61460.1| hypothetical protein FRAAL2816 [Frankia alni ACN14a] Length=478 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 157/464 (34%), Positives = 228/464 (50%), Gaps = 38/464 (8%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYL--DNDVSASTGKRRPAYE 64 +R Y+RIS DR G LGVARQ D L R +P + DNDVSA + KRRP YE Sbjct 17 LRPVGYVRISLDREGAGLGVARQTAD-LNDVADRLGMPRPEVVTDNDVSAYSRKRRPGYE 75 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRL 123 ++L+ I +G+ ++ W +DRL R P ELE + LA++ L + TV G VDL+T +GRL Sbjct 76 EVLSGIASGRWNVLLIWHVDRLTRNPKELEEIVDLANQTGLRIETVKGGRVDLSTGEGRL 135 Query 124 VARLKGSVAAHETEHKKARQRRAARQKAERG--HPNWSKAFGYLPGPNGPEPDPRTAPLV 181 AR+ G +A +E+EH+ R RR Q AE G H + FGY P+G P A ++ Sbjct 136 HARILGGLARYESEHRSDRIRRKMLQNAEAGLPHGGMRRPFGY--EPDGMTVRPDEAEVI 193 Query 182 KQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGP 241 + A ++AG +L + + NDA T TG PW+ T L K L R AGLR ++G GP Sbjct 194 RWAMGGVIAGRTLRALVGELNDAQVATSTGVPWSVTVLRKVLIGGRIAGLRVHQGRVLGP 253 Query 242 VDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAG 301 AIV +W +AVL P R + L++G+A CG+CG + Sbjct 254 AAWPAIVSMPRWE---------LCRAVLTDPARRTASGNKPNRLVSGIALCGRCGKVMRA 304 Query 302 SYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREI----HDA-AE 356 G +Y C + + + D ++ ++ V LA D V +I HD A Sbjct 305 GGNRAGARMYRCASANHLRRRGDLVDDVVTRFVVGWLAR-DGVTFDVPDIAVPTHDLRAR 363 Query 357 AETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFD 416 A+ +RL + + L G T +S D + + +L+ +D ER Sbjct 364 ADEVRLRISQVEDAL--------VGDPTDDLKDVSVDGLKRNLARLRGNLEDLERDEKLT 415 Query 417 GIPLGTPQVAGMIAELSP----DRFRAVLDVLAEVVVQPVGKSG 456 +P + G+ AE P DR R+++D L +V V P K G Sbjct 416 ALP---SALHGVTAENFPGLPLDRRRSIVDYLCKVTVLPTSKGG 456 >gi|227506239|ref|ZP_03936288.1| recombinase [Corynebacterium striatum ATCC 6940] gi|227197187|gb|EEI77235.1| recombinase [Corynebacterium striatum ATCC 6940] Length=503 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 171/520 (33%), Positives = 243/520 (47%), Gaps = 78/520 (15%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGK-RRPAYE 64 RAA+YLRIS D + + L + RQR+DC L QR W V Y+D +SAS RP Y+ Sbjct 3 TRAAIYLRISLDAAMDGLAIDRQRQDCEALAEQRGWDVVHTYVDQSISASKKDVDRPDYD 62 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLV 124 M+A G+I A++ W+LDRL R+P +LE ++ A+E+ L L T GDVDLAT GR+ Sbjct 63 AMVASFERGEIDAIICWNLDRLTRQPAQLEEWIDRAEEQGLKLVTANGDVDLATDGGRMY 122 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERG--HPNWSKAFGYLPGPNGPEPDPRTAPLVK 182 AR+K +VA E E K RQ RA +Q+AE+G + + GY + E P A V Sbjct 123 ARIKAAVARGEIERKSMRQSRAQQQRAEQGRWYSGGVRPIGYT---STGEIIPSEAAAVI 179 Query 183 QAYADILAGASLGDVCRQWNDAGA--------------FTITGR---------------- 212 + + G S+ D+ R + +T R Sbjct 180 GMFRAVERGNSMRDIARALSGVDQPGLPDIPTTPRHMHTVVTERNARRRAAGQEEKLVPD 239 Query 213 --PWTTTTLSKFLRKPRNAGLRAYKGA----------RYGPVDRDAIVG---KAQWSPLV 257 PW T+L LR P AG YK A R + RD G K QW P+V Sbjct 240 AQPWAYTSLHSILRNPVYAGYSTYKKAKRKGVKNKYRRVTHIVRDPDTGEPVKGQWEPIV 299 Query 258 DEATFWAAQAVLDAPGRAPG--RKSVRRHLLTGLAGCGKCGNHL---AGSYRTDGQVVYV 312 +W Q VLD P R R++ RRHL +GL C +CGN + A YR Sbjct 300 TPDLWWRVQNVLDDPDRLTNKERRNTRRHLGSGLYVCDECGNPVHTHADRYR-------- 351 Query 313 CKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELETLYGELD 372 C AC + +++ + ++ RL D DLL D E + I EL L +L Sbjct 352 CAACG--LVRTHSVDDFVLAVIRARLGRDDLADLL--PTADDDEVDAIDDELAELRAKLA 407 Query 373 RLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERL----RVFDGIPLGTPQVAGM 428 R+ + E L+ AR +K + + +I KL+ R+ RL + D +P A Sbjct 408 RVQADYDEELIEARDLKRARNRYEPQIEKLETRRA---RLAGASALLDTTGYASPVDAFD 464 Query 429 IAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNW 468 AEL+ R V++ L +V ++ + + FNPE VQ+ W Sbjct 465 NAELAVQ--RRVINPLCQVRLRRGVRGTKTFNPESVQIVW 502 >gi|345008918|ref|YP_004811272.1| Resolvase domain-containing protein [Streptomyces violaceusniger Tu 4113] gi|344035267|gb|AEM80992.1| Resolvase domain-containing protein [Streptomyces violaceusniger Tu 4113] Length=481 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 143/373 (39%), Positives = 190/373 (51%), Gaps = 30/373 (8%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQ 65 +RAA+Y+RIS+DR G LG+ARQ EDC LC ++ W V+ Y DNDVSA +G RP +++ Sbjct 3 IRAAIYVRISQDRGGAGLGIARQEEDCRALCSRKGWDVVDVYPDNDVSAYSGAPRPKWQE 62 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVA 125 +L DI G I AVV W +DRL R P ELE + LAD L LATV+G++DLATP GR++A Sbjct 63 LLEDINEGVINAVVCWHVDRLTRSPRELEDVIDLADRHGLELATVSGEIDLATPTGRMIA 122 Query 126 RLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRT-----APL 180 R+ G+ A HE EHK RQ+R RQ AE G K G P G E D T A + Sbjct 123 RMLGAAARHEAEHKAERQQRQRRQAAEAG-----KVAGGGKRPFGYEDDRITVRESEAEI 177 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 +++ +LAG SL +CR W T G PW + L + L R +G R + R Sbjct 178 IREGARRVLAGESLASICRDWKGREIVTAAGIPWKPSGLRRMLASARISGRREHTPRRSW 237 Query 241 PVDR---DAIVGKAQWSPLVDEATFWAAQAVLDAPG-RAPGRKSVRRHLLTGLAGCGK-- 294 R IVG A W + +A+L P R R +LL+G+ CGK Sbjct 238 ESTRPLLGEIVGDAVWPGTISHEDSDRLRALLSDPDRRRTNDGGNRSYLLSGILRCGKPT 297 Query 295 ------CGNHLAGSYRTDGQVVYVC------KACHGVAILADNIEPILYHIVAERLAMPD 342 CG + G R+ G YVC AC G A A+ + + +V P Sbjct 298 GEPGKACGWGMVGRPRS-GVPRYVCPNTPGTNACGGTAANAERTDDQIRDMVLAAFESPT 356 Query 343 AVDLLRREIHDAA 355 + LR D + Sbjct 357 FMKRLREPDEDGS 369 >gi|269219204|ref|ZP_06163058.1| putative integrase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211351|gb|EEZ77691.1| putative integrase [Actinomyces sp. oral taxon 848 str. F0332] Length=513 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 177/527 (34%), Positives = 238/527 (46%), Gaps = 80/527 (15%) Query 4 TTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSAS-TGKRRP 61 + PVRAA+YLRIS DR + L + RQREDC KL R W VE Y+D +SAS K+RP Sbjct 6 SQPVRAAIYLRISLDREMDGLAIDRQREDCEKLAQFRGWEIVETYVDQSISASDKTKKRP 65 Query 62 AYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQG 121 Y +M+AD AG + A+V +DLDRL R+P ELE ++ A+ + L L T GD DLAT G Sbjct 66 GYLRMVADYEAGLLDAIVCYDLDRLTRQPRELEDWIDRAESRGLLLVTANGDADLATDGG 125 Query 122 RLVARLKGSVAAHETEHKKARQRRAARQKAERGH-PNWSKAFGYLPGPNGPEPDPRTAPL 180 R+ AR+K +VA E E K ARQ R Q+A +G P + GY E + A Sbjct 126 RMYARIKAAVARAEVERKGARQSRTHVQRARQGRPPKGVRPLGYATSGEVIEYE---AEA 182 Query 181 VKQAYADILAGASLGDVCR-----QWNDAGA---------FTIT---------------- 210 VK YA L G SL + R Q + GA TI Sbjct 183 VKAIYAAFLRGDSLHGIARALSGAQGDGEGAGVPHLPLHSRTIVLERNARREVEGKAQRP 242 Query 211 ---GRPWTTTTLSKFLRKPRNAGLRAYK---------GARYGPVDRDAIVGK-------A 251 +PW+ +T+ LR PR AG Y G RD +V Sbjct 243 VPDDKPWSPSTVLGILRNPRYAGYSVYTSKDVRRQEAGESRRKALRDNLVKDEHGELVLG 302 Query 252 QWSPLVDEATFWAAQAVLDAPGRAPGR--KSVRRHLLTGLAGCGKCGNHLAGSYRTDGQV 309 QW +V+ +W Q +LD P R R ++R+HL GL C +CG + R Sbjct 303 QWEAIVEADEWWTVQNLLDDPARVTNRSGSTMRKHLGAGLFRCSECGEPVRTRAR----- 357 Query 310 VYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRR-------EIHDAAEAETIRL 362 Y CKA H + D I+ + +V ERL D L+R E+ DA + Sbjct 358 YYSCKAGH-LNRTRDAIDDFVRALVVERLKRRD----LKRNKQQAPPEVKDAFSERIAQQ 412 Query 363 ELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGT 422 E D A E EG AR D A+IT+L+A + V I LGT Sbjct 413 RARIARAERDYDA-EAIEGADLAR----IRDAARAEITRLEAERLTSGAGTVLAPI-LGT 466 Query 423 PQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR 469 P A R ++D L V ++ + + F+PE V++ W+ Sbjct 467 PDPATAFLSAPIALQRTMIDTLMTVTLRRARQGKKGFDPESVEIAWK 513 >gi|183982143|ref|YP_001850434.1| site-specific integrase [Mycobacterium marinum M] gi|183175469|gb|ACC40579.1| site-specific integrase [Mycobacterium marinum M] Length=479 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 145/410 (36%), Positives = 210/410 (52%), Gaps = 35/410 (8%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQML 67 AA+Y RIS D G LGVARQ EDC KL R W V EY+DNDVSA +GK R Y +ML Sbjct 16 AAIYARISSDVEGTGLGVARQLEDCRKLAEDRGWPVGAEYVDNDVSAFSGKPRREYARML 75 Query 68 ADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRL-ALATVAGDVDLATPQGRLVAR 126 AD+ +G AV+ ++LDRLHRRP+ELE F++L + + +ATV D+DL G +AR Sbjct 76 ADLASGDRDAVIVYNLDRLHRRPVELEEFVTLCESVGVRDVATVTADIDLGNDDGLFMAR 135 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNWS-KAFGYLPGPNGPEPDPRT-----APL 180 + + AA E+ K AR RR Q A+ G P+ S + FGY E D T A + Sbjct 136 IFAAFAAKESGRKSARIRRKMLQNAQAGLPHGSARPFGY-------EADKITVRESEAAV 188 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYG 240 V++ LAG SL + N++ + W T+ + + L R AGLR ++G G Sbjct 189 VREMVDRYLAGQSLRSLTIWLNESQITPSVAKSWQTSAVRQVLSSGRIAGLREHRGEVIG 248 Query 241 PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLA 300 P AI+ A+ ++ AA++V + ++ R +LL+GL C +CGN L Sbjct 249 PAVWPAIITPAERDRVL---ARMAARSVTKS-------RTARTYLLSGLLRCRRCGNRLY 298 Query 301 GSYRTDGQVV----YVC------KACHGVAILADNIEPILYHIVAERLAMPDAVDLLRRE 350 R YVC C + ++A +E +L V RL D L + Sbjct 299 SQARHSNPQNRVRRYVCLKGPDHGGCGRLTVVAAPVEELLTEAVLTRLDSAQLADALAGK 358 Query 351 IHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKIT 400 + A+ + +++T G LD LA A+G +TAR+ + D + +IT Sbjct 359 ANADADVTALAAQVDTDQGRLDELAGLYADGAITAREWIAARDPITERIT 408 >gi|311744269|ref|ZP_07718073.1| recombinase [Aeromicrobium marinum DSM 15272] gi|311312442|gb|EFQ82355.1| recombinase [Aeromicrobium marinum DSM 15272] Length=461 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 156/480 (33%), Positives = 239/480 (50%), Gaps = 43/480 (8%) Query 11 VYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGKRRPAYEQMLAD 69 +YLRIS+DR+G+ + RQR+DCL L R W V E++D DVSA + K RP +E M++ Sbjct 1 MYLRISQDRAGDGTSIDRQRQDCLALASSRGWTVAGEFVDRDVSAYSAKPRPQFEAMVSA 60 Query 70 ITAGKIAAVVAWDLDRLHRRPIELEAFM---SLADEKRLALATVAGDVDLATPQGRLVAR 126 I AG+ A++A+ DRL RRPI+LE + ++AD +R +ATV GD +L G + R Sbjct 61 IEAGEFDALLAYHPDRLMRRPIDLERLVHACTVADTRR--IATVVGDTNLGDGDGLAMLR 118 Query 127 LKGSVAAHETEHKKARQRRAARQKAERGHPNWS--KAFGYLPGPNGPEPDPRT-----AP 179 + +AH+++ R RR ++A G P+ S +A+GY E D T A Sbjct 119 MLALFSAHQSDTAARRIRRKNDERAAAGLPHVSGERAYGY-------ELDRMTVVESEAA 171 Query 180 LVKQAYADILAGASLGDVCRQWNDAGAFTITG-RPWTTTTLSKFLRKPRNAGLRAYKGAR 238 ++++A LAG SL + G T TG W T TL L+ PR AGLR ++G Sbjct 172 VIREAARRFLAGESLVSIAGWLQADGVRTATGMNEWRTPTLRNLLKSPRIAGLREHRG-- 229 Query 239 YGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNH 298 +VG A W ++ A A L A A R+S RR+LL+G CG CG Sbjct 230 -------EVVGDAAWPAIITRAEHEQIAARL-AESAATNRRSPRRYLLSGRVFCGLCGTK 281 Query 299 LAGSYRTDGQVVYVCK------ACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIH 352 + S G+ Y C+ C + I A+ +E + V RL P+ +++ + Sbjct 282 MYSSP-DGGRRRYGCRKGPDFGGCAKIFINAEPLEAFIVRAVLTRLDAPETRAAIQQTLV 340 Query 353 DAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQ---ARQQDQ 409 +E T+ EL TL + D L LT+R+ + D + ++ ++ AR Sbjct 341 PDSEHATLADELATLQAQQDELVEMWTTRKLTSREWTKARDGLEPRVESVRRRLARFSTG 400 Query 410 ERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLD-VLAEVVVQPVGKSGRIFNPERVQVNW 468 L F G P G+ Q A +++ R AV+ +L+ VV+ P GR + R++ +W Sbjct 401 TGLADFTGRP-GSLQDAWEAPDMTLQRQAAVIGAILSRVVIHPAKARGRQVDLSRIEPHW 459 >gi|255325530|ref|ZP_05366632.1| recombinase [Corynebacterium tuberculostearicum SK141] gi|255297468|gb|EET76783.1| recombinase [Corynebacterium tuberculostearicum SK141] Length=536 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 154/543 (29%), Positives = 241/543 (45%), Gaps = 101/543 (18%) Query 2 RYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPV-EYLDNDVSAST-GKR 59 R T +AA+YLR+S D G G+ RQREDC +L + W V EY+DN +SAS + Sbjct 17 RLTMTRKAAIYLRMSLDADGRGAGIERQREDCRRLAAAKGWEVVDEYVDNSISASKRNVK 76 Query 60 RPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATP 119 R AY++M AD AG ++ W DRL R+P+++E +++ A++ L + T G+ DL T Sbjct 77 RHAYDRMEADYEAGLFNTIICWHFDRLTRQPMQMERWLTRAEDGDLQVVTCTGNYDLETE 136 Query 120 QGRLVARLKGSVAAHETEHKKARQRRAARQKAER-GHPNWSKAFGYLPGPNGPEPDPRTA 178 QGR++ R+ + A E E K ARQ+RA Q A + G P +GY N E T Sbjct 137 QGRMLVRVLAAFARGEIELKAARQKRAVLQNARKGGKPAGIPPYGYDDDFNVIEDRAET- 195 Query 179 PLVKQAYADILAGASLGDVCR--------------------------------------- 199 V+ Y I AG ++ D+ R Sbjct 196 --VRGIYQAIQAGITMADIVRALNGDATRESEVPWLNPCTPPGVLKRERDNERRVERGME 253 Query 200 --------QWNDAGAFTITGRP----WTTTTLSKFLRKPRNAGLRAYKGARYGP------ 241 +W + G I P + + KP + GL G+ P Sbjct 254 PLPLPKKKKWVEHGVLRIASNPAYAGYRLHMPQEVRMKPEHRGL----GSETAPGKKLHI 309 Query 242 -VDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAG-------CG 293 D D + QW P+VD+ +W+ +L P R+ RRH +G A CG Sbjct 310 VRDEDGEPVQGQWEPIVDKNLWWSVSEILCDP-----RRDKRRHNRSGRAALGAATYVCG 364 Query 294 KCGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHD 353 +CG H+ T Y C+ C G+A + I+ ++ ++ RLA+ D V+ L Sbjct 365 ECGYHM-----TTLGPRYRCRQC-GIARTSKPIDRLVCSVIERRLALDDVVEALTARQEP 418 Query 354 AAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLR 413 E+ I + L ++ R+ + +GL+TA+ +K + D V A++ +L+ +Q Sbjct 419 TEESRAIDKQRHELEAKIKRVEADYDDGLITAKDLKRNRDKVEAELEQLRQKQ------- 471 Query 414 VFDGIPLGTPQV-AGM------IAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQV 466 +P T V AGM S RA++D L EV V + + F+P+ V++ Sbjct 472 -IATLPEATQSVLAGMSNPAEGFKNSSMVTKRAIIDALMEVRVYKAPRGHKQFDPKTVEI 530 Query 467 NWR 469 W+ Sbjct 531 IWK 533 >gi|340774477|gb|EGR96961.1| recombinase [Propionibacterium acnes SK182B-JCVI] Length=518 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 168/534 (32%), Positives = 242/534 (46%), Gaps = 85/534 (15%) Query 2 RYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKR- 59 R T P +AA+YLRIS+DR + L + RQREDC L R+W +E Y+D SA+ Sbjct 4 RSTAPRKAAIYLRISQDREMDGLAIDRQREDCENLAQFRRWDVIETYVDQSKSATDRTTI 63 Query 60 RPAYEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATP 119 RP Y++M+AD G+ A++ +DLDRL R+P +LE ++ A+ + LAL T GD DL+T Sbjct 64 RPDYDRMVADYLLGRFDAIICYDLDRLTRQPRQLEDWIDAAELRGLALVTANGDADLSTD 123 Query 120 QGRLVARLKGSVAAHETEHKKARQRRAARQKAERGH-PNWSKAFGYLPGPNGPEPDPRTA 178 GR+ AR+K +VA E E K ARQ A RQ+A +G P + GY +G E P A Sbjct 124 GGRMYARIKAAVARAEMERKSARQSAAQRQRAMQGRAPKGMRPLGY--AVDG-EVIPHEA 180 Query 179 PLVKQAY---ADILAGASLGDVCRQWNDAGAF---------------------------- 207 V+ Y I SL + R +D+ Sbjct 181 EAVRAIYDLFTRIEHPESLRSLARALSDSEKIDGLSPLPKHTHTVSVERAAARERQGLEP 240 Query 208 --TITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVD------------RDAIVG--KA 251 + PW+ +T+ LR PR A L Y ++ D RD + Sbjct 241 RPIVEDGPWSPSTVLGILRNPRYAALSTYT-PKFAQADGKRRRMWKAQILRDDAGEPIRG 299 Query 252 QWSPLVDEATFWAAQAVLDAPGRAPGR--KSVRRHLLTGLAGCG--------KCGNHLAG 301 QW +VD+ T+W AQ VLD R + R+HL +GL CG CG + G Sbjct 300 QWEQIVDDETWWKAQQVLDDTERVTNTSGSTKRKHLGSGLYRCGYVNEDTGETCGKKVTG 359 Query 302 S---YRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAA-EA 357 + Y+ G +V A I+ + ++A+RLA DA ++ E+ D A Sbjct 360 APRGYKCAGHIVRSGAA----------IDDFVTTVIAKRLARKDARVMV--EVADGGPHA 407 Query 358 ETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDG 417 I + + R + ++ AR +K D A+I +L+A + Q R Sbjct 408 AGIDSAISDQRARILRAEADYDAEIIEARDLKRVRDAAEARIQELEAERLMQSRAGALSP 467 Query 418 IPLGTPQVAGMIAELSPDRFRAVLDVLAEVVV--QPVGKSGRIFNPERVQVNWR 469 I LG A E S D R +D LA + + QP G+ G F E V V+WR Sbjct 468 I-LGVDDPAAAFREASLDLRRQTVDTLATITLLPQPRGRKG--FRTESVVVDWR 518 >gi|297157701|gb|ADI07413.1| recombinase [Streptomyces bingchenggensis BCW-1] Length=462 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 152/474 (33%), Positives = 228/474 (49%), Gaps = 43/474 (9%) Query 24 LGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQMLADITAGKIAAVVAWD 82 +G+ARQ EDC LC ++ W ++ Y DNDVSA +G RPA+++++ DI G + AV W Sbjct 1 MGIARQEEDCRALCARKGWEVIDVYSDNDVSAYSGAPRPAWQELIDDINQGLVDAVACWH 60 Query 83 LDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARLKGSVAAHETEHKKAR 142 +DRL R P ELE + +AD L LATV+G++DLATP GR++AR+ G+ A HE EHK R Sbjct 61 VDRLTRSPRELEDVIDIADRHGLELATVSGEIDLATPTGRMIARMLGAAARHEAEHKAER 120 Query 143 QRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRT-----APLVKQAYADILAGASLGDV 197 Q+R RQ AE G K G P G E D T A ++++ +LAG SL + Sbjct 121 QQRQRRQAAEAG-----KIAGGGKRPFGYEDDRITVRESEAEIIREGARRVLAGESLASI 175 Query 198 CRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLR------AYKGARYGPVDRDAIVGKA 251 CR W D G T G PW + L + L R +G R ++KG R P+ IV A Sbjct 176 CRDWKDRGFVTAAGIPWKPSGLRRMLASARVSGRREHTPRSSWKGTR--PL-LGEIVSDA 232 Query 252 QWSPLVDEATFWAAQAVLDAPG-RAPGRKSVRRHLLTGLAGCGK--------CGNHLAGS 302 W ++ +A+L P R R +LL+G+ CGK CG + G Sbjct 233 MWPGIISHEDSDRLRALLSDPNRRLANSGGSRSYLLSGILRCGKPTGEPDKTCGWGMVGR 292 Query 303 YRTDGQVVYVCK------ACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAE 356 R+ G YVC AC G A A+ + + +V P + LR E Sbjct 293 PRS-GVPRYVCPNVPGTGACGGTATNAEKTDDHIRDMVLAAFESPVFMQRLREPDDGGNE 351 Query 357 A-ETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVF 415 E IR + E L G LA + +++ ++ ++ + ++ + + + R V Sbjct 352 LYEQIRADEEELEG----LAEDYGNRMISRKEWMVARAPIQERLERNRNKLAKVSRKAVL 407 Query 416 DGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVV-VQPVGKSGRIFNPERVQVNW 468 G + E++ + RAV+ + V P R ++P+R ++W Sbjct 408 LGFVGSYEDMQSRWEEMNDSQRRAVITAAVRAIHVVPANPRKR-WDPDRFVIDW 460 >gi|296141572|ref|YP_003648815.1| resolvase [Tsukamurella paurometabola DSM 20162] gi|296029706|gb|ADG80476.1| Resolvase domain protein [Tsukamurella paurometabola DSM 20162] Length=460 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 135/470 (29%), Positives = 217/470 (47%), Gaps = 27/470 (5%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKRRPAYEQML 67 A +Y RIS+DR G+ RQ +DCL L + W ++ Y +N+ SAS +RRP ++ ML Sbjct 3 AVIYCRISQDREDGAAGIDRQEQDCLALAAEHGWNVIKVYRENNTSASAARRRPEFQAML 62 Query 68 ADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLVAR 126 + G + ++ + DR +R+ +L S+ + ++ + TV AG VDL+T G VA Sbjct 63 KHLATGTVGGLLFYHPDRAYRKLDDLVDLTSVCIKLKIQIHTVKAGRVDLSTATGIAVAE 122 Query 127 LKGSVAAHETEHKKARQRRAARQKAERG-HPNWSKAFGYLPGPNGPEPDPRTAPLVKQAY 185 + A ET R +R+ +Q A G + ++ FGY G G E +P A ++ A Sbjct 123 MSAVFAKLETARMGERIKRSKQQTAAEGRYRGGARPFGYKDG--GMELEPHEADAIRTAS 180 Query 186 ADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRD 245 D+L+G SL + R WNDAG T G W T L K L++PRNAGL G Sbjct 181 TDLLSGTSLTRISRNWNDAGLRTARGGTWQATNLRKVLQRPRNAGLVEMDG--------- 231 Query 246 AIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHL-AGSYR 304 I+G A W +V E A ++L P R R+H+ G+ CGKCG + + Sbjct 232 NIIGPAAWPAIVTEDQLRAVTSLLSDPSRRTTTTYERKHMGRGIFLCGKCGASMRVFKLK 291 Query 305 TDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLEL 364 T Y C ++I + ++ +++ +L+RR + A + + + E Sbjct 292 TP---TYRCVDQPHLSIQKSLADSVVSNVIIAAFNEQGVQNLIRRSAYPAVDVDALTAER 348 Query 365 ETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQ---ARQQDQERLRVFDGIPLG 421 + ++D G +T + ST ++T ++ A E+L D Sbjct 349 ADVSAKIDERTDMFDNGEMTRDSYRKSTARFRERLTAIERELASATVPEQLEDADQF--- 405 Query 422 TPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIF--NPERVQVNWR 469 +SPDR ++D L V + PVG + ER+Q+ W+ Sbjct 406 -DDFRDYWESISPDRQGKIIDRLLTVTILPVGSGAQTSAAKIERIQIEWK 454 >gi|229821003|ref|YP_002882529.1| Resolvase domain-containing protein [Beutenbergia cavernae DSM 12333] gi|229566916|gb|ACQ80767.1| Resolvase domain protein [Beutenbergia cavernae DSM 12333] Length=494 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 168/499 (34%), Positives = 234/499 (47%), Gaps = 52/499 (10%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE--YLDNDVSAST--GKRRPA 62 +RAA+Y+RIS D G +LGVARQ EDC L QR + V + DNDVSAST K+RP Sbjct 9 MRAALYVRISADPEGRELGVARQEEDCRALA-QRLGLEVVAVFADNDVSASTRSTKKRPR 67 Query 63 YEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALAT-VAGDVDLATPQG 121 Y+ ML AG+ A++A+ RL RRP E+E + LA+ + L T V+GD DL+T G Sbjct 68 YDAMLESARAGEFGAILAYSNSRLTRRPREVEDLIELAERDGVRLHTVVSGDDDLSTADG 127 Query 122 RLVARLKGSVAAHETEHKKARQRRAARQKAERG-HPNWSKAFGYLPGPNGPEPDPRTAPL 180 R+VAR+KG+V E+E R +RA Q A+ G + + FGY G G EP+P A Sbjct 128 RMVARIKGNVDTAESERTSERAQRAKLQAAQAGRYRGGPRPFGYRRG--GLEPEPLEAAA 185 Query 181 VKQAYADILAGASLGDVCRQWNDAGAFTITG--------------RPWTTTTLSKFLRKP 226 ++ A I AG SL + A FT +G RP L + L +P Sbjct 186 LRGAAESIAAGGSLRSAASRIA-ADGFTSSGRRKPGSGPDGPIQRRPIDALWLRRVLLRP 244 Query 227 RNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGR-KSVRRHL 285 RNAGL ++G +VG A+W +V E + A A+L P R S RR+L Sbjct 245 RNAGLLEHRG---------GVVGPAEWPAIVPEPLWRAVCAILTDPSRRTNSGASGRRNL 295 Query 286 LTGLAGCGKCGNHL----AGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMP 341 L+G+A C CG+ + S + + VY C A ++ VA+ Sbjct 296 LSGVATCDVCGSRIIATGTSSRAGNPRRVYACSGERKCVTRARDVVDAYVREVAKAYLRE 355 Query 342 DAVDLLRREIHDAAEAETIRLELET-LYGELDRLAVERAEGLLTARQ-VKISTDIVNAKI 399 DL+R + A A + E+D LA + A G LT Q V I+ + Sbjct 356 HLPDLMRADGSADAAALADAQANADGIRREMDALAAQTAAGTLTVAQLVTINVGLRERLD 415 Query 400 TKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGR-- 457 A + +ER+R D P L DR A L L + ++P G+ GR Sbjct 416 ATEAAIARARERVRFAD--LADAPDPGEAFENLPLDRQSAALAALFTITIKPQGR-GRPK 472 Query 458 -------IFNPERVQVNWR 469 F+P+ V V R Sbjct 473 GWRPGMPYFDPDSVDVTAR 491 >gi|289704580|ref|ZP_06501013.1| resolvase, N-terminal domain protein [Micrococcus luteus SK58] gi|289558700|gb|EFD51958.1| resolvase, N-terminal domain protein [Micrococcus luteus SK58] Length=478 Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 163/488 (34%), Positives = 233/488 (48%), Gaps = 49/488 (10%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWV--PVEYLDNDVSASTGKR--RPAYE 64 AA+Y+RIS D G GV RQ DC L + P + DND+ AS+ R RPA+ Sbjct 8 AAIYVRISRDADGRAAGVERQEADCRALAERMGLTLHPRVFKDNDIGASSRSRKARPAFR 67 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALAT-VAGDVDLATPQGRL 123 ++L + AG++ ++A+ R+ RRP+E E+ + L++ L + T V+ T GR+ Sbjct 68 ELLEAVEAGEVNVILAYSNSRITRRPLEWESLIRLSETHGLQVHTVVSSSAQFDTADGRM 127 Query 124 VARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRT-----A 178 V R+ + A E + R RA +Q+ E G AF P P G E D T A Sbjct 128 VLRVLAANDAAEADRISERVTRAKQQRLEEG------AFRGGPRPFGYEADGMTIRETEA 181 Query 179 PLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTT---TTLSKFLRKPRNAGLRAYK 235 +++A I+AG SL V D G F T R + L + L +PRNAGL + Sbjct 182 QALREAAGRIVAGESLRSVTADLRDRG-FKGTRRADSGLQPVQLRRILLRPRNAGLVEHY 240 Query 236 GARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVR-RHLLTGLAGCGK 294 G GP A W ++ E + A ++VL P R S R +HL + L CG Sbjct 241 GKVTGP---------AAWPAILSEDEWQAVRSVLTDPARKTNHGSNRVKHLGSSLFRCGV 291 Query 295 CGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERL-AMPDAVDLLRRE--I 351 CG+H+ S + G VY CK V+ + I+ + ++A RL A P D+LRRE + Sbjct 292 CGDHVRASAASRGYRVYRCKTGAHVSRAQEPIDHFIREVMAARLRADP---DVLRREDDV 348 Query 352 HDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQER 411 DAA E IR EL TL +LA + A+GLL QVK + ++AKI A Sbjct 349 DDAAPNE-IRRELSTLRARRAQLADDYADGLLDGAQVKAAGARIDAKIEAAAAELARLTS 407 Query 412 LRVFDGIPLGTPQVAGMIAELSP-DRFRAVLDVLAEVVVQPVGKSGR---------IFNP 461 V G L + AG +P RA++D LA + + P GK GR + Sbjct 408 ASVLSG--LADAEDAGNAFLAAPIGAQRAIVDALATITIYPAGKKGRPAGWQTGDHYIDL 465 Query 462 ERVQVNWR 469 E VQ+ W+ Sbjct 466 ETVQITWK 473 >gi|29831011|ref|NP_825645.1| integrase/recombinase [Streptomyces avermitilis MA-4680] gi|29608125|dbj|BAC72180.1| putative serine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length=477 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 151/503 (31%), Positives = 238/503 (48%), Gaps = 70/503 (13%) Query 8 RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTGKR---RPAY 63 R +Y RIS D G+ LGVARQ DC +L R W V+ Y DNDVSA KR R + Sbjct 4 RVGIYTRISRDDEGDALGVARQHRDCERLADLRSWQAVKVYEDNDVSAY--KRHVVREQF 61 Query 64 EQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEK-RLALATVAGDVDLATPQGR 122 E ML+D+ AG I +VA+DLDRL R+P +LE + + DE+ RL ATV DV+L TP GR Sbjct 62 ELMLSDLGAGLIDGIVAYDLDRLARQPRDLERLIEIFDERPRLEFATVTNDVNLGTPDGR 121 Query 123 LVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKA-FGYLPGPNGPEPDPRTAPLV 181 ++R+ + A + R +R + A++G + A +G+L + + DP+ A + Sbjct 122 TMSRIMVAFANKSSHDASRRIKRKHLELAQQGKDSGGPAPYGWLK-EDRSKVDPKAAAAI 180 Query 182 KQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTT------LSKFLRKPRNAGLRAYK 235 ++A +ILAG +G + +W + G G P T + L PR G R Y Sbjct 181 REAQREILAGVRIGTIRTRWQEQG----LGNPRAGTKRMAHHHVEHILTSPRLVGYRTYH 236 Query 236 GARYGPVDRDAIVGKAQWSPLVDEATFWAA--QAVLDAPGRAPGRKSVRRHLLTGLAGCG 293 G D ++G +W ++ W A AV + + PGR R+++L+G+A CG Sbjct 237 GEVLNDEDGRPVMG--EWEA-INTLEEWEAVCAAVAERKQKQPGRSLARKYMLSGIARCG 293 Query 294 KCGNHLAGSYRTDGQ-------VVYVCKACHG----VAILADNIEPILYHIVAERL---A 339 C + G Q Y C +G V + + ++ ++ + E A Sbjct 294 LCKTKIRGQINQRWQPGSKATKFTYQCSVVNGGCGKVGRVGEPVDRLIAELALEEQRARA 353 Query 340 MPDAVDLLRREIHDAAEAETIRLELETLYGELDRLA-VERAEGLLTARQVKISTDIVNAK 398 V + +R +A ELE + ++ +L ER ++Q+ ++T + + Sbjct 354 AATTVPIDQRWSRNA--------ELEQVNDDITQLVNAER------SKQITVTTLL---Q 396 Query 399 ITKLQARQQDQ---ERLRVFDGIPLGTPQVAGMIAELSPDRF---------RAVLDVLAE 446 + + RQ+D+ ER R + L + G A L+ D F VL L+ Sbjct 397 LLPGKERQRDELKLERARFYK--ELKQSEAKGDAANLTLDEFFGLPIERQQEIVLHRLSA 454 Query 447 VVVQPVGKSGRIFNPERVQVNWR 469 V++ P GK R F+P ++ WR Sbjct 455 VIIHPAGKGRRRFDPSLIEPVWR 477 >gi|345008179|ref|YP_004810533.1| Resolvase domain-containing protein [Streptomyces violaceusniger Tu 4113] gi|344034528|gb|AEM80253.1| Resolvase domain-containing protein [Streptomyces violaceusniger Tu 4113] Length=477 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 152/496 (31%), Positives = 233/496 (47%), Gaps = 56/496 (11%) Query 8 RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSA-STGKRRPAYEQ 65 + +Y RIS D G+ LGVARQR DC +L R W PV+ Y DNDVSA R +E Sbjct 4 KVGIYTRISRDDEGDALGVARQRTDCERLADLRTWQPVKIYEDNDVSAFKRNVVRDEFEL 63 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEK-RLALATVAGDVDLATPQGRLV 124 ML D+ AG I VVA+DLDRL R+P +LE + + DE+ RL ATV DV+L T GR + Sbjct 64 MLKDLRAGLIDGVVAYDLDRLARQPRDLERLIEIFDERPRLEFATVTNDVNLGTADGRTM 123 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKA-FGYLPGPNGPEPDPRTAPLVKQ 183 AR+ + A + R +R + A++G N A +G+L + DP A +++ Sbjct 124 ARIMVAFANKSSHDTSRRIKRKHLELAQQGKANGGPAPYGWLKDDRN-KVDPEAAKHIRE 182 Query 184 AYADILAGASLGDVCRQWNDAGAFTITGRPWTTTT------LSKFLRKPRNAGLRAYKGA 237 A ++LAG +G + +W + G G P T + L PR G R Y G Sbjct 183 AQKEVLAGVRIGTIRTRWQEQG----LGNPRQGTKRMAHHHVEHILTNPRLVGYRTYHGE 238 Query 238 RYGPVDRDAIVGKAQWSPLVDEATFWAA--QAVLDAPGRAPGRKSVRRHLLTGLAGCGKC 295 D ++G +W P ++ W A A+ + G+ RR+LL+G+A CG C Sbjct 239 ILHGDDGQPVMG--EWDP-INIVEEWEAVCAAIAERKQTKAGQMLARRYLLSGIARCGLC 295 Query 296 GNHLAGSYRTD-------GQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLR 348 N + G Q Y C +G + + ++A RL + + + Sbjct 296 KNKIRGQVNHKWKPGSKGAQYKYQCSKVNGGCGKVGRVGEPVDKLIA-RLVLKE-----Q 349 Query 349 REIHDAAEAETIRLELETLY---GELDRLAVERAEGLLTARQVKISTDIVNAKITKLQAR 405 RE +A T + +E + EL+ L + A+ L+ A + K T V+ + L A+ Sbjct 350 RE-----KATTTGVPVEARWPRERELEDLLQDIAQ-LIEAEKAKTIT--VSTLLQLLPAK 401 Query 406 QQDQERLRVFDG---IPLGTPQVAGMIAELSPDRFRA---------VLDVLAEVVVQPVG 453 +Q+++ LR+ + G +L+ + F A VL L VV+ P G Sbjct 402 EQERDALRLERARFYKERKQAEAKGNAGDLTEEEFFALPIERQREIVLHSLTAVVIHPAG 461 Query 454 KSGRIFNPERVQVNWR 469 + R F+P+ + WR Sbjct 462 RGKRKFDPDLIDPIWR 477 >gi|29832091|ref|NP_826725.1| integrase/recombinase [Streptomyces avermitilis MA-4680] gi|29609209|dbj|BAC73260.1| putative serine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length=500 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 148/509 (30%), Positives = 246/509 (49%), Gaps = 66/509 (12%) Query 8 RAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE-YLDNDVSASTG-KRRPAYEQ 65 R +Y+RIS+DR G LGV RQ +DC L W +E Y+DNDV+A+ K+R Y + Sbjct 11 RVGIYVRISDDREGGGLGVKRQEDDCRLLAASLGWRVIEVYIDNDVTAADRRKKRKDYLR 70 Query 66 MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLV 124 MLADI G I A+V+W DR++R+P+ELE +++ ++ + +ATV AGD+DL+TP GRLV Sbjct 71 MLADIEMGCIDAIVSWHPDRVYRQPVELEHLINIVEDHKTEIATVKAGDLDLSTPTGRLV 130 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERG--HPNWSKAFGYLPGPNGPEP--------- 173 AR+ G++A +E EHK+ R R ++ E G H + + FGY +G Sbjct 131 ARMLGAIAKYEVEHKQERILRKIQELVEAGKIHNSGHRPFGYTRLFDGEGSRRKILGEIL 190 Query 174 DPRTAPLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRA 233 + A +K+ +L G LG + + N+AG T TG W+ + L R +G + Sbjct 191 NEEEAAHIKKWARRVLEGEKLGTLVAEANEAGIKTSTGGAWSYQAMRFLLMSGRISGRKE 250 Query 234 YKGARYG---------PVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRH 284 ++G YG P D D I +A + +E F A D P ++ Sbjct 251 HRGEIYGQAVWPKIIEPEDSDMI--RALLAERSEE--FKAEYGERDTPA--------LKY 298 Query 285 LLTGLAGCGKCGNHLAG---SYRTDGQV---------------VYVCKACHGV----AIL 322 L+GL C +H+AG S + +G+ +Y CK G I Sbjct 299 PLSGLVKCTCKVSHVAGEPCSCKEEGKKHHRMSTGQRGDKDMPIYTCKKDGGGCGGRTIQ 358 Query 323 ADNIEPILYHIVAERLAMPDAVDLL-RREIHDAAEAETIRLELETLYGELDRLAVERAEG 381 ++EP+L ++ +RL +A + A EA+ R E L E +G Sbjct 359 IPDLEPLLEKLLFKRLEEVEAAAEADDNDPRPALEAKLARWERRK-----KELGDELLDG 413 Query 382 LLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVL 441 AR+++ + D +N ++ AR++ + + + ++ + S R ++ Sbjct 414 DRPAREIRDAIDTLNGRMA--GARKEIAQYGVKANLSEVSAAELRKAWKDYSVARKQSTY 471 Query 442 -DVLAEVVVQPVGKSGRIFNPERVQVNWR 469 ++ E+++ P + ++NP+RV+V W+ Sbjct 472 RGLIREILIHPATRPFNVWNPDRVEVFWK 500 >gi|793759|dbj|BAA07372.1| ORF469 protein [Bacteriophage R4] Length=469 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 147/446 (33%), Positives = 205/446 (46%), Gaps = 54/446 (12%) Query 7 VRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKW-VPVEYLDNDVSASTGK-RRPAYE 64 VRA +Y+RIS DR+GE+LGV RQ E C +LC V ++DND+SA+ RP +E Sbjct 8 VRADIYVRISLDRTGEELGVERQEESCRELCKSLGMEVGQVWVDNDLSATKKNVVRPDFE 67 Query 65 QMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLV 124 M+A A+V W DRL R +LE + L A +AG +DL+TP GR V Sbjct 68 AMIAS----NPQAIVCWHTDRLIRVTRDLERVIDLGVNVH---AVMAGHLDLSTPAGRAV 120 Query 125 ARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPG--PNGPEPDPRT----- 177 AR + A +E E K RQ+ A Q A G P Y PG P G D T Sbjct 121 ARTVTAWATYEGEQKAERQKLANIQNARAGKP-------YTPGIRPFGYGDDHMTIVTAE 173 Query 178 APLVKQAYADILAGASLGDVCRQWNDAG-----AFTITGRPWTTTTLSKFLRKPRNAGLR 232 A ++ IL G SL V R W + + G+ W+ + K L PR G Sbjct 174 ADAIRDGAKMILDGWSLSAVARYWEELKLQSPRSMAAGGKGWSLRGVKKVLTSPRYVGRS 233 Query 233 AYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRR---HLLTGL 289 +Y G +VG AQW P++D ++ A+L+ P R G R LL G+ Sbjct 234 SYLG---------EVVGDAQWPPILDPDVYYGVVAILNNPDRFSGGPRTGRTPGTLLAGI 284 Query 290 AGCGKCGNHLAG-SYRTDGQVVYVCKACHGVA--ILADNIEPILYHIVAERLAMPDAVD- 345 A CG+CG ++G YR G +VY CK H +AD RL PD + Sbjct 285 ALCGECGKTVSGRGYR--GVLVYGCKDTHTRTPRSIADGRAS---SSTLARLMFPDFLPG 339 Query 346 -LLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQA 404 L + D A + E +TL LD LA AEG ++ Q+ ++ + K+ ++A Sbjct 340 LLASGQAEDGQSAASKHSEAQTLRERLDGLATAYAEGAISLSQMTAGSEALRKKLEVIEA 399 Query 405 RQQDQERLRVFDGIPLGTPQVAGMIA 430 + FD + VAG+I+ Sbjct 400 DLVGSAGIPPFDPV----AGVAGLIS 421 >gi|226306020|ref|YP_002765980.1| integrase [Rhodococcus erythropolis PR4] gi|226185137|dbj|BAH33241.1| putative integrase [Rhodococcus erythropolis PR4] Length=490 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/361 (36%), Positives = 176/361 (49%), Gaps = 48/361 (13%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYL--DNDVSASTGKRRPAYEQM 66 AA+Y RIS D++G LGV RQ DC +L QR V V ++ DND+SA +GK RP+Y + Sbjct 14 AAIYCRISRDKTGAGLGVERQEGDCREL-AQRLGVTVSHVLVDNDLSAYSGKPRPSYLSL 72 Query 67 LADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLVA 125 L + G+I V+AW DRLHR +ELE +++ ++ + T AG +DL+TP GRL+A Sbjct 73 LELMKNGQIGMVIAWHSDRLHRSMVELEEYVTASEVGGVTTHTAKAGPLDLSTPSGRLIA 132 Query 126 RLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPG--PNGPEPD-----PRTA 178 R GSVA +E EH RQR A Q A+ G YL G P G EP A Sbjct 133 RQLGSVARYEVEHMIERQRAAKLQAAKSGK--------YLGGQRPYGFEPQRTAIRESEA 184 Query 179 PLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGAR 238 ++++ GAS + N G T G+ W + L +P NAG+ +KG Sbjct 185 AVIRELAHRFTNGASYWSLAIDLNQRGILTQHGKDWNALKIRNLLIRPINAGIVDHKGVE 244 Query 239 YGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRA---PGRKSVRRHLLTGLAGCGKC 295 Y + AI+ K +W L QA + R PGR R+H+L G CG C Sbjct 245 Y-VAESAAILTKDEWDDL---------QAAISLSKRTSVHPGR--TRKHVLQGYLFCGLC 292 Query 296 GNHLA--------GSYRTD---GQVVYVCKACHGVAILADNIEPI---LYHIVAERLAMP 341 G L GSY+T G+ +G ++ +EPI L + RL P Sbjct 293 GKKLFHKSKQQRDGSYKTTAACGKTDSQTGRPNGCGKVSRMVEPIIDLLSDCIMARLESP 352 Query 342 D 342 + Sbjct 353 E 353 >gi|315502208|ref|YP_004081095.1| resolvase domain-containing protein [Micromonospora sp. L5] gi|315408827|gb|ADU06944.1| Resolvase domain protein [Micromonospora sp. L5] Length=473 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 122/324 (38%), Positives = 166/324 (52%), Gaps = 33/324 (10%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPV---EYLDNDVSASTG--KRRPAY 63 AA Y RIS+DR G +LGV RQR+D + + V Y DND+SAST K RP Y Sbjct 10 AATYERISDDREGRELGVDRQRKDNQAVAEREGLTLVGGAPYTDNDLSASTKAKKDRPQY 69 Query 64 EQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGR 122 ++LAD AG+ + ++A+ RL R P E E + LA + + V + DL T QGR Sbjct 70 RRLLADARAGRFSVIIAYTQGRLTRTPREYEDLIDLATQYGIRFLYVRSPSFDLNTAQGR 129 Query 123 LVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRT----- 177 + R + AA E E R RA + ERG F P P G EPD RT Sbjct 130 EIGRTMAARAAGEAEETAERVARAVTDRVERGE------FHGGPRPYGLEPDARTIREDE 183 Query 178 APLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGA 237 A ++ +LAG SL + R+ N+AG TI+G PW + K L PR AGLR ++GA Sbjct 184 AERIRAWARHVLAGGSLRSIARELNEAGVSTISGAPWRGEVIRKILLNPRVAGLRVHRGA 243 Query 238 RYGPVDRDAIVGKAQWSP-LVDEATFWAAQAVLDAPG--RAPGRKSVRRHLLTGLAGCGK 294 Y WSP ++ AT+ A + VL++P R PG R++L GL C + Sbjct 244 EY-----------PSWSPEIIAPATWRALKVVLESPDRRRNPG-SPARKYLGVGLFTCER 291 Query 295 C-GNHLAGSYRTDGQVVYVCKACH 317 C G + S +GQ Y+CK+C+ Sbjct 292 CPGTTVNTSRNHNGQRTYLCKSCY 315 >gi|295394546|ref|ZP_06804768.1| possible integrase/recombinase [Brevibacterium mcbrellneri ATCC 49030] gi|294972597|gb|EFG48450.1| possible integrase/recombinase [Brevibacterium mcbrellneri ATCC 49030] Length=351 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/304 (38%), Positives = 161/304 (53%), Gaps = 18/304 (5%) Query 11 VYLRISEDRSGEQLGVARQREDCLKLCGQRKWV-PVEYLDNDVSASTGKRRPAYEQMLAD 69 VYLRISEDR+G + GV RQR+DCL+LC + P ++DND+SA +GK+RP Y +L Sbjct 15 VYLRISEDRTGAEAGVERQRQDCLELCSRLGISDPAIFMDNDISAYSGKKRPGYLDLLER 74 Query 70 ITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQGRLVARLK 128 + G + +VAW +DRL+RRP ELE + L + + + TV G DL T +GRL+AR Sbjct 75 VKLGP-SRIVAWHVDRLYRRPRELEDLIDLVEAHPIRIETVKGGAFDLNTHEGRLMARQL 133 Query 129 GSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYADI 188 ++A++E+ HK R R A +QKAERG + +GY G P A + ++ Sbjct 134 VAIASYESGHKADRIRGANQQKAERGDWHGGAKYGY---GIGGVLIPEEAAVFREMADRF 190 Query 189 LAGASLGDVCRQWNDAGAFTITGRP------WTTTTLSKFLRKPRNAGLRAYKGARYGPV 242 LAG S+ + R N G T + W +T+ L R +G RAY+ A Sbjct 191 LAGQSVRQITRWLNRDGGPTPPSKGKSRLNVWHESTVGSILCSARISGQRAYEPASKTTA 250 Query 243 D---RD-AIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNH 298 RD AI+G W ++ +AV + P R GR S + LL GL KCGN Sbjct 251 TWERRDRAILGPGNWEAIITPDETARIRAVFNHPDRRVGRSS--KSLLAGLITYAKCGNT 308 Query 299 LAGS 302 L S Sbjct 309 LVSS 312 >gi|148273470|ref|YP_001223031.1| putative integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831400|emb|CAN02358.1| putative integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=567 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 127/352 (37%), Positives = 178/352 (51%), Gaps = 36/352 (10%) Query 9 AAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVE--YLDNDVSAS----TGKRRPA 62 AA+Y RIS D +GE LGV RQ +DC +L QR + V Y DND+SAS K RP Sbjct 13 AAIYTRISRDSAGEGLGVERQLDDC-QLLAQRLGLAVVKVYSDNDISASDVAVKKKARPG 71 Query 63 YEQMLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATV-AGDVDLATPQG 121 Y MLAD AG ++A RL RR +ELE + L D+ + + TV +G DL+T G Sbjct 72 YSSMLADARAGAFTHIIAHSNSRLTRRMLELEDLIKLFDQTGVVIQTVKSGQDDLSTSDG 131 Query 122 RLVARLKGSVAAHETEHKKARQRRAARQKAERGH--PNWSKAFGYLPGPNGPEPDPRTAP 179 R+VAR+K SV E++ R + A RQKA +G + FG+ + +P A Sbjct 132 RMVARIKASVDIAESDRISERAKAAHRQKALKGEVKVQAKRPFGF--QKDCVTHEPTEAA 189 Query 180 LVKQAYADILAGASLGDVCRQWNDAGAFTITG-RPWTTTTLSKFLRKPRNAGLRAYKGAR 238 L+++A I+ GA + + ++W AG T TG W L + L R G+R YKG Sbjct 190 LIREAVMKIIGGAPITQIQQEWKAAGIKTSTGLDEWRWLPLRRVLLGARTVGIREYKGEE 249 Query 239 YGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRH--LLTGLAGCGKCG 296 VD + ++G W P++ A A AVL GR+ + VRR LL+GL CGKCG Sbjct 250 LF-VDGEVVMG--NWEPIITVAERDQALAVLQ--GRS--KTKVRRGHWLLSGLLTCGKCG 302 Query 297 NHLAGSYRTDGQV-------------VYVCKACHG-VAILADNIEPILYHIV 334 + GS + + Y C + +AI +D +E L +V Sbjct 303 APMYGSLGSPKKAPEGSEAGDYARPNTYSCNNANSHLAITSDRLEKYLQQVV 354 Lambda K H 0.320 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 991704033964 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40