BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1622c Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|15608760|ref|NP_216138.1| integral membrane cytochrome D ubiq... 677 0.0 gi|289574289|ref|ZP_06454516.1| membrane cytochrome D ubiquinol ... 676 0.0 gi|306775808|ref|ZP_07414145.1| membrane cytochrome D ubiquinol ... 674 0.0 gi|340626628|ref|YP_004745080.1| putative integral membrane cyto... 673 0.0 gi|289761770|ref|ZP_06521148.1| cytochrome d ubiquinol oxidase [... 609 2e-172 gi|183982439|ref|YP_001850730.1| integral membrane cytochrome D ... 551 5e-155 gi|296164490|ref|ZP_06847061.1| cytochrome D ubiquinol oxidase s... 548 5e-154 gi|118465122|ref|YP_882348.1| cytochrome D ubiquinol oxidase, su... 543 1e-152 gi|118617247|ref|YP_905579.1| integral membrane cytochrome D ubi... 543 2e-152 gi|41407413|ref|NP_960249.1| CydB [Mycobacterium avium subsp. pa... 542 3e-152 gi|336457901|gb|EGO36894.1| cytochrome d oxidase cyd, subunit II... 539 2e-151 gi|254820973|ref|ZP_05225974.1| cytochrome D ubiquinol oxidase, ... 529 3e-148 gi|240167999|ref|ZP_04746658.1| integral membrane cytochrome D u... 520 2e-145 gi|342860807|ref|ZP_08717457.1| cytochrome d ubiquinol oxidase, ... 516 2e-144 gi|126435632|ref|YP_001071323.1| cytochrome d ubiquinol oxidase ... 454 1e-125 gi|108800003|ref|YP_640200.1| cytochrome d ubiquinol oxidase sub... 452 4e-125 gi|120403813|ref|YP_953642.1| cytochrome d ubiquinol oxidase sub... 447 1e-123 gi|145224170|ref|YP_001134848.1| cytochrome d ubiquinol oxidase ... 441 9e-122 gi|118469342|ref|YP_887545.1| cytochrome D ubiquinol oxidase sub... 440 2e-121 gi|229488367|ref|ZP_04382233.1| cytochrome D ubiquinol oxidase, ... 393 2e-107 gi|226308304|ref|YP_002768264.1| cytochrome bd-type menaquinol o... 393 2e-107 gi|226364341|ref|YP_002782123.1| cytochrome bd-type menaquinol o... 385 6e-105 gi|169629716|ref|YP_001703365.1| cytochrome D ubiquinol oxydase ... 384 1e-104 gi|111021819|ref|YP_704791.1| cytochrome bd ubiquinol oxidase su... 381 7e-104 gi|262200951|ref|YP_003272159.1| cytochrome d ubiquinol oxidase ... 362 6e-98 gi|326384532|ref|ZP_08206211.1| cytochrome bd-type menaquinol ox... 358 5e-97 gi|333918384|ref|YP_004491965.1| cytochrome bd-type menaquinol o... 355 7e-96 gi|54022553|ref|YP_116795.1| putative cytochrome D ubiquinol oxi... 351 1e-94 gi|343925905|ref|ZP_08765420.1| cytochrome bd-type menaquinol ox... 350 2e-94 gi|312138311|ref|YP_004005647.1| cytochrome d ubiquinol oxidase ... 347 2e-93 gi|229820108|ref|YP_002881634.1| cytochrome d ubiquinol oxidase,... 335 9e-90 gi|296141243|ref|YP_003648486.1| cytochrome d ubiquinol oxidase ... 333 3e-89 gi|269794460|ref|YP_003313915.1| cytochrome d oxidase cyd subuni... 320 3e-85 gi|269124621|ref|YP_003297991.1| cytochrome d ubiquinol oxidase ... 308 1e-81 gi|256832879|ref|YP_003161606.1| cytochrome d ubiquinol oxidase,... 307 2e-81 gi|296393662|ref|YP_003658546.1| cytochrome d ubiquinol oxidase ... 306 4e-81 gi|302535628|ref|ZP_07287970.1| cytochrome d ubiquinol oxidase, ... 306 5e-81 gi|317506789|ref|ZP_07964566.1| cytochrome oxidase subunit II pr... 304 2e-80 gi|25027808|ref|NP_737862.1| putative cytochrome D ubiquinol oxi... 300 2e-79 gi|239989190|ref|ZP_04709854.1| putative cytochrome D ubiquinol ... 300 3e-79 gi|340793144|ref|YP_004758607.1| cytochrome bd-type menaquinol o... 297 2e-78 gi|38234469|ref|NP_940236.1| putative cytochrome ubiquinol oxida... 297 2e-78 gi|72161041|ref|YP_288698.1| cytochrome bd ubiquinol oxidase, su... 295 7e-78 gi|344045735|gb|EGV41405.1| cytochrome bd-type quinol oxidase, s... 295 1e-77 gi|145295292|ref|YP_001138113.1| hypothetical protein cgR_1232 [... 294 1e-77 gi|328883761|emb|CCA57000.1| Cytochrome d ubiquinol oxidase subu... 294 1e-77 gi|19552374|ref|NP_600376.1| cytochrome bd-type quinol oxidase, ... 294 1e-77 gi|182437438|ref|YP_001825157.1| putative cytochrome D ubiquinol... 293 3e-77 gi|336320293|ref|YP_004600261.1| cytochrome d ubiquinol oxidase ... 293 3e-77 gi|300859120|ref|YP_003784103.1| cytochrome d ubiquinol oxidase ... 291 8e-77 >gi|15608760|ref|NP_216138.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (cytochrome bd-I oxidase subunit II) [Mycobacterium tuberculosis H37Rv] gi|15841077|ref|NP_336114.1| cytochrome d ubiquinol oxidase, subunit II [Mycobacterium tuberculosis CDC1551] gi|31792808|ref|NP_855301.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (cytochrome bd-I oxidase subunit II) [Mycobacterium bovis AF2122/97] 66 more sequence titles Length=346 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 VVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 +VLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG Sbjct 1 MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 Query 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA Sbjct 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 Query 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY Sbjct 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA Sbjct 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT Sbjct 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP Sbjct 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 >gi|289574289|ref|ZP_06454516.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis K85] gi|339631678|ref|YP_004723320.1| cytochrome D ubiquinol oxidase subunit II [Mycobacterium africanum GM041182] gi|289538720|gb|EFD43298.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis K85] gi|339331034|emb|CCC26706.1| putative integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (cytochrome BD-I oxidase subunit II) [Mycobacterium africanum GM041182] Length=346 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/346 (99%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 VVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 +VLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG Sbjct 1 MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 Query 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFG+ILRAVAIEWRGKIDDPKWRTGA Sbjct 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGIILRAVAIEWRGKIDDPKWRTGA 120 Query 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY Sbjct 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA Sbjct 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT Sbjct 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP Sbjct 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 >gi|306775808|ref|ZP_07414145.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis SUMu001] gi|306971915|ref|ZP_07484576.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis SUMu010] gi|307079631|ref|ZP_07488801.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis SUMu011] gi|308215723|gb|EFO75122.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis SUMu001] gi|308358602|gb|EFP47453.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis SUMu010] gi|308362528|gb|EFP51379.1| membrane cytochrome D ubiquinol oxidase subunit II cydB [Mycobacterium tuberculosis SUMu011] Length=346 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/346 (99%), Positives = 345/346 (99%), Gaps = 0/346 (0%) Query 1 VVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 +VLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG Sbjct 1 MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 Query 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA Sbjct 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 Query 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY Sbjct 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA Sbjct 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT Sbjct 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTG ARRAP Sbjct 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGPARRAP 346 >gi|340626628|ref|YP_004745080.1| putative integral membrane cytochrome D ubiquinol oxidase [Mycobacterium canettii CIPT 140010059] gi|340004818|emb|CCC43962.1| putative integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (cytochrome BD-I oxidase subunit II) [Mycobacterium canettii CIPT 140010059] Length=346 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/346 (99%), Positives = 344/346 (99%), Gaps = 0/346 (0%) Query 1 VVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 +VLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG Sbjct 1 MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 Query 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA Sbjct 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 Query 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY Sbjct 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 GAVFIALKTSGPIRDDAYRFAVWLSLPV GLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA Sbjct 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVTGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 AATVLVWRRVSDGWAF CTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT Sbjct 241 AATVLVWRRVSDGWAFTCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP Sbjct 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 >gi|289761770|ref|ZP_06521148.1| cytochrome d ubiquinol oxidase [Mycobacterium tuberculosis GM 1503] gi|289709276|gb|EFD73292.1| cytochrome d ubiquinol oxidase [Mycobacterium tuberculosis GM 1503] Length=332 Score = 609 bits (1571), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 312/313 (99%), Positives = 313/313 (100%), Gaps = 0/313 (0%) Query 1 VVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 +VLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG Sbjct 1 MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG 60 Query 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA Sbjct 61 NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA 120 Query 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY Sbjct 121 DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY 180 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA Sbjct 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT Sbjct 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 Query 301 LKIMTWVTAFFAP 313 LKIMTWVTAFFAP Sbjct 301 LKIMTWVTAFFAP 313 >gi|183982439|ref|YP_001850730.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB [Mycobacterium marinum M] gi|183175765|gb|ACC40875.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB [Mycobacterium marinum M] Length=346 Score = 551 bits (1420), Expect = 5e-155, Method: Compositional matrix adjust. Identities = 294/342 (86%), Positives = 312/342 (92%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQELWF VIA LFLGFFILEGFDFGVGMLMAPFAH G GDPE HRRTALNTIGPVWDGNE Sbjct 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLIT GAA+FAAFPGWYATVFS LYLPLLAILFGMI+R+VAIEWRGK+DDPKWR ADF Sbjct 63 VWLITGGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDPKWRALADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFAILVRGLPVDA+GHVALSI DVLNAYTLLGGLATAGLF YGA Sbjct 123 GIAAGSWLPAILWGVAFAILVRGLPVDADGHVALSIGDVLNAYTLLGGLATAGLFLFYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT+GPIRDDAYRFAV LSLPV LVAGFG+WTQLAYGK WTW +L VA AQ AA Sbjct 183 VFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLAYGKQWTWALLGVAVVAQLAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRRVSDGWAF+C +VVAAVV+LLFGALYPNLVPSTLN +W++TI+NASSTPYTLK Sbjct 243 VLLVWRRVSDGWAFLCIAVVVAAVVLLLFGALYPNLVPSTLNERWNVTIYNASSTPYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 IMTWVTA FAPLTV YQ WTYWVFRQRISAERIPP GLARR Sbjct 303 IMTWVTALFAPLTVVYQAWTYWVFRQRISAERIPPSIGLARR 344 >gi|296164490|ref|ZP_06847061.1| cytochrome D ubiquinol oxidase subunit II [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900090|gb|EFG79525.1| cytochrome D ubiquinol oxidase subunit II [Mycobacterium parascrofulaceum ATCC BAA-614] Length=346 Score = 548 bits (1412), Expect = 5e-154, Method: Compositional matrix adjust. Identities = 293/343 (86%), Positives = 305/343 (89%), Gaps = 0/343 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE WFGVI LFLGFFILEGFDFGVGMLM P A VG+G+PE RRTALNTIGPVWDGNE Sbjct 3 LQEFWFGVIGLLFLGFFILEGFDFGVGMLMEPLARVGIGEPEPLRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI GAA+FAAFPGWYATVFS LYLPLLAILFGMILRAVAIEWRGKIDD KWR ADF Sbjct 63 VWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWRGWADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFAILVRGLPVDA G V LSI DVLNAYTLLGGLATAGLF LYGA Sbjct 123 GIAAGSWLPAVLWGVAFAILVRGLPVDAAGQVHLSITDVLNAYTLLGGLATAGLFLLYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VFIALKTSG IRDDAYRFAVWLSLPV LVAGFGLWTQLA+GK+WTWLVLAVA AQ AA Sbjct 183 VFIALKTSGAIRDDAYRFAVWLSLPVTALVAGFGLWTQLAHGKNWTWLVLAVAVVAQLAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRR SDGWAF CT IVVAAVV+LLFG+LYPNLVPSTLN QWSLTI+NASST YTLK Sbjct 243 VLLVWRRASDGWAFACTAIVVAAVVILLFGSLYPNLVPSTLNKQWSLTIYNASSTHYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345 +MTWVT APLTV YQ WTYWVFR+RISAERIP P GLARRA Sbjct 303 VMTWVTVIMAPLTVVYQAWTYWVFRKRISAERIPAPIGLARRA 345 >gi|118465122|ref|YP_882348.1| cytochrome D ubiquinol oxidase, subunit II [Mycobacterium avium 104] gi|254775612|ref|ZP_05217128.1| cytochrome D ubiquinol oxidase, subunit II [Mycobacterium avium subsp. avium ATCC 25291] gi|118166409|gb|ABK67306.1| cytochrome D ubiquinol oxidase, subunit II [Mycobacterium avium 104] Length=346 Score = 543 bits (1399), Expect = 1e-152, Method: Compositional matrix adjust. Identities = 285/342 (84%), Positives = 306/342 (90%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WFG+I LFLGFFILEGFDFGVGMLM PFA VG+G+PE RRTALNTIGPVWDGNE Sbjct 3 LQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIGEPEPLRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI GAA+FAAFPGWYATVFS LYLPLLAILFGMILRAVAIEWRGKIDD KWR ADF Sbjct 63 VWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWRGWADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFA+LVRGLPVDA+GH+ LS+ DVLN YTLLGGLATAGLF LYGA Sbjct 123 GIAAGSWLPAVLWGVAFAVLVRGLPVDADGHIHLSVTDVLNPYTLLGGLATAGLFLLYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKTSG IRDDAYRFAVWLSLPV GLVAGFGLWTQL YGKDWTWLVLAVA AQ AA Sbjct 183 VFVALKTSGAIRDDAYRFAVWLSLPVTGLVAGFGLWTQLGYGKDWTWLVLAVAVVAQVAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRR SDGWAF C +VVAAVV+LLFGALYPNLVPSTL+ +WSLTI+NASST YTLK Sbjct 243 VLLVWRRASDGWAFTCLALVVAAVVILLFGALYPNLVPSTLDSRWSLTIYNASSTHYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +MTWVTA AP+TV YQ WTYWVFRQR+SA+RIP P GL RR Sbjct 303 VMTWVTAIMAPVTVVYQAWTYWVFRQRLSADRIPAPVGLTRR 344 >gi|118617247|ref|YP_905579.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB [Mycobacterium ulcerans Agy99] gi|118569357|gb|ABL04108.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB [Mycobacterium ulcerans Agy99] Length=538 Score = 543 bits (1398), Expect = 2e-152, Method: Compositional matrix adjust. Identities = 288/339 (85%), Positives = 308/339 (91%), Gaps = 0/339 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQELWF VIA LFLGFFILEGFDFGVGMLMAPFAH G GDPE HRRTALNTIGPVWDGNE Sbjct 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLIT+GAA+FAAFPGWYATVFS LYLPLLAILFGMI+R+VAIEWRGK+DD KWR ADF Sbjct 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFAILVRGLPVDANG +ALSI DVLNAYTLLGGLATAGLF YGA Sbjct 123 GIAAGSWLPAILWGVAFAILVRGLPVDANGRLALSIGDVLNAYTLLGGLATAGLFLFYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT+GPIRDDAYRFAV LSLPV LVAGFG+WTQLAYGK WTW +L VA AQ AA Sbjct 183 VFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLAYGKQWTWALLGVAVVAQMAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRRVSDGWAF+C +VVAAVV+LLFGALYPNLVPSTLN +W++T++NASSTPYTLK Sbjct 243 VLLVWRRVSDGWAFLCIAVVVAAVVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 IMTWVTA FAPLTV YQ WTYWVFRQRISAERIPP GL Sbjct 303 IMTWVTALFAPLTVVYQAWTYWVFRQRISAERIPPSIGL 341 >gi|41407413|ref|NP_960249.1| CydB [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395765|gb|AAS03632.1| CydB [Mycobacterium avium subsp. paratuberculosis K-10] Length=346 Score = 542 bits (1396), Expect = 3e-152, Method: Compositional matrix adjust. Identities = 284/342 (84%), Positives = 306/342 (90%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WFG+I LFLGFFILEGFDFGVGMLM PFA VG+G+PE RRTALNTIGPVWDGNE Sbjct 3 LQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIGEPEPLRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI GAA+FAAFPGWYATVFS LYLPLLAILFGMILRAVAIEWRGKIDD KWR ADF Sbjct 63 VWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWRGWADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFA+LVRGLPVDA+GH+ LS+ DVLN YTLLGGLATAGLF LYGA Sbjct 123 GIAAGSWLPAVLWGVAFAVLVRGLPVDADGHIHLSVTDVLNPYTLLGGLATAGLFLLYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKTSG IRDDAYRFAVWLSLPV GLVAGFGLWTQL YGK+WTWLVLAVA AQ AA Sbjct 183 VFVALKTSGAIRDDAYRFAVWLSLPVTGLVAGFGLWTQLGYGKNWTWLVLAVAVVAQVAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRR SDGWAF C +VVAAVV+LLFGALYPNLVPSTL+ +WSLTI+NASST YTLK Sbjct 243 VLLVWRRASDGWAFTCLALVVAAVVILLFGALYPNLVPSTLDSRWSLTIYNASSTHYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +MTWVTA AP+TV YQ WTYWVFRQR+SA+RIP P GL RR Sbjct 303 VMTWVTAIMAPVTVVYQAWTYWVFRQRLSADRIPAPVGLTRR 344 >gi|336457901|gb|EGO36894.1| cytochrome d oxidase cyd, subunit II [Mycobacterium avium subsp. paratuberculosis S397] Length=346 Score = 539 bits (1389), Expect = 2e-151, Method: Compositional matrix adjust. Identities = 283/342 (83%), Positives = 305/342 (90%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WFG+I LFLGFFILEGFDFGVGMLM PFA VG+G+PE RRTALNTIGPVWDGNE Sbjct 3 LQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIGEPEPLRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI GAA+FAAFPGWYATVFS LYLPLLAILFGMILRAVAIEWRGKIDD KWR AD Sbjct 63 VWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWRGWADS 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFA+LVRGLPVDA+GH+ LS+ DVLN YTLLGGLATAGLF LYGA Sbjct 123 GIAAGSWLPAVLWGVAFAVLVRGLPVDADGHIHLSVTDVLNPYTLLGGLATAGLFLLYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKTSG IRDDAYRFAVWLSLPV GLVAGFGLWTQL YGK+WTWLVLAVA AQ AA Sbjct 183 VFVALKTSGAIRDDAYRFAVWLSLPVTGLVAGFGLWTQLGYGKNWTWLVLAVAVVAQVAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRR SDGWAF C +VVAAVV+LLFGALYPNLVPSTL+ +WSLTI+NASST YTLK Sbjct 243 VLLVWRRASDGWAFTCLALVVAAVVILLFGALYPNLVPSTLDSRWSLTIYNASSTHYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +MTWVTA AP+TV YQ WTYWVFRQR+SA+RIP P GL RR Sbjct 303 VMTWVTAIMAPVTVVYQAWTYWVFRQRLSADRIPAPVGLTRR 344 >gi|254820973|ref|ZP_05225974.1| cytochrome D ubiquinol oxidase, subunit II [Mycobacterium intracellulare ATCC 13950] Length=346 Score = 529 bits (1363), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 285/342 (84%), Positives = 305/342 (90%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WFG+I LFLGFFILEGFDFGVGMLM PFA VG+G+ E RRTALNTIGPVWDGNE Sbjct 3 LQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIGEAEPLRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI GAA+FAAFPGWYATVFS LYLPLLAILFGMI+RAVAIEWRGKIDD KWR ADF Sbjct 63 VWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRAVAIEWRGKIDDTKWRGWADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFA+LVRGLPVDA GH+ LS+ DVLN YT+LGGLATAGLF LYGA Sbjct 123 GIAAGSWLPAVLWGVAFAVLVRGLPVDAAGHIHLSVADVLNPYTVLGGLATAGLFLLYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKTSG IR+DA+RFAVWLSLPV GLVAGFGLWTQLAYGKDWTW VLA A AQ AA Sbjct 183 VFVALKTSGAIREDAHRFAVWLSLPVTGLVAGFGLWTQLAYGKDWTWAVLAAAVVAQLAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRR SDGWAF C +VVAAVV+LLFG+LYPNLVPSTLN QWSLTI+NASST YTLK Sbjct 243 VLLVWRRASDGWAFTCVALVVAAVVILLFGSLYPNLVPSTLNTQWSLTIYNASSTHYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +MTWVTAF APLTV YQ WTYWVFRQRISAERIP P GLARR Sbjct 303 VMTWVTAFMAPLTVVYQAWTYWVFRQRISAERIPAPIGLARR 344 >gi|240167999|ref|ZP_04746658.1| integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB [Mycobacterium kansasii ATCC 12478] Length=346 Score = 520 bits (1339), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 271/342 (80%), Positives = 293/342 (86%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQ+LWF VI LFLGF +LEGFDFGVGMLM P A V GD E RR LNTIGPVWDGNE Sbjct 3 LQQLWFAVIGVLFLGFLVLEGFDFGVGMLMEPLARVAPGDSEIQRRAVLNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAGA +FAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGK+DD KWR ADF Sbjct 63 VWLLTAGAGMFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKVDDTKWRAWADF 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 G+AAGSWLPA+LWGVAFAILV GLPVD +GH+ L I DVLNAYTLLGGLATAGLF YGA Sbjct 123 GVAAGSWLPAVLWGVAFAILVHGLPVDGDGHIHLGIGDVLNAYTLLGGLATAGLFLQYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VFIALKT+GPIRD AYR A+WL+L LV GFG+WTQLAYGK WTW L +A AQ AA Sbjct 183 VFIALKTAGPIRDSAYRIALWLALAATVLVGGFGVWTQLAYGKQWTWAALGLAVIAQVAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +L+WRR SDG+AF+ TL+VVAAVVVLLFG LYPNLVPSTLN QW++TI+NASSTPYTLK Sbjct 243 VLLIWRRASDGFAFLSTLVVVAAVVVLLFGVLYPNLVPSTLNEQWNVTIYNASSTPYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 IMTWVTA FAPLTV YQ WTYWVFRQRISAERIPP GLARR Sbjct 303 IMTWVTAIFAPLTVVYQAWTYWVFRQRISAERIPPSIGLARR 344 >gi|342860807|ref|ZP_08717457.1| cytochrome d ubiquinol oxidase, subunit II [Mycobacterium colombiense CECT 3035] gi|342131831|gb|EGT85088.1| cytochrome d ubiquinol oxidase, subunit II [Mycobacterium colombiense CECT 3035] Length=346 Score = 516 bits (1328), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 278/342 (82%), Positives = 302/342 (89%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WFG++ LFLGFFILEGFDFGVGMLM PFA VG+G+PE RRTALNTIGPVWDGNE Sbjct 3 LQEVWFGILGVLFLGFFILEGFDFGVGMLMEPFARVGIGEPEPLRRTALNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI GAA+FAAFP WYATVFS LYLPLLAILFGMI+RAVAIEWRGKIDD KWR AD Sbjct 63 VWLIVGGAAMFAAFPAWYATVFSTLYLPLLAILFGMIVRAVAIEWRGKIDDTKWRGWADA 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 IAAGSWLPA+LWGVAFA+LVRGLPV+A+GH+ LSI DVLN YT+LGGLATAGLF YGA Sbjct 123 AIAAGSWLPAVLWGVAFAVLVRGLPVEADGHIHLSITDVLNPYTVLGGLATAGLFLFYGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 F+ALKTSG IRDDAYRF VWLSLPV GLVA FGLWTQLA+GK WTWLVLAVA AQ AA Sbjct 183 TFVALKTSGAIRDDAYRFGVWLSLPVTGLVAAFGLWTQLAHGKGWTWLVLAVAVLAQLAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +LVWRR SDGWAF C +VVAAVV+LLFG+LYPNLVPSTLNPQWSLTI+NASST YTLK Sbjct 243 VLLVWRRASDGWAFTCVALVVAAVVILLFGSLYPNLVPSTLNPQWSLTIYNASSTHYTLK 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +MTWVTAF APLTV YQ W+YW+FRQRISA+RIP P GLARR Sbjct 303 VMTWVTAFMAPLTVIYQAWSYWIFRQRISADRIPAPIGLARR 344 >gi|126435632|ref|YP_001071323.1| cytochrome d ubiquinol oxidase subunit II [Mycobacterium sp. JLS] gi|126235432|gb|ABN98832.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Mycobacterium sp. JLS] Length=347 Score = 454 bits (1168), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 244/345 (71%), Positives = 273/345 (80%), Gaps = 1/345 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQELWF +IAALFLGF +LEGFDFGVGMLMAP VG G PET RR LNTIGPVWD NE Sbjct 3 LQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGMVGEGTPETRRRAVLNTIGPVWDANE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAGA++FAAFP WYATVFSALYLPLLAILFGMILR V IEWRGKIDDP WR AD+ Sbjct 63 VWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRADW 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGH-VALSIPDVLNAYTLLGGLATAGLFSLYG 181 GIA GSWLPA+LWGVAFA+LVRGLPVDA V L+ DV+NAYTLLGGLAT LF YG Sbjct 123 GIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSLFLFYG 182 Query 182 AVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAA 241 + F+ALKTSGP+RDDA+RFA LS PV L GFGLWTQLAYGK WTW LA A A Sbjct 183 STFLALKTSGPVRDDAFRFARILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVALLV 242 Query 242 ATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTL 301 A L+W +GWAF+ T++VVAAV L+FG LYP L+ STLNP+W +TI N SSTPYTL Sbjct 243 AVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPYTL 302 Query 302 KIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 KIM+W + PL + YQ WTYWVFRQRISA+RIP GL+++AP Sbjct 303 KIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQAP 347 >gi|108800003|ref|YP_640200.1| cytochrome d ubiquinol oxidase subunit II [Mycobacterium sp. MCS] gi|119869128|ref|YP_939080.1| cytochrome d ubiquinol oxidase subunit II [Mycobacterium sp. KMS] gi|108770422|gb|ABG09144.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Mycobacterium sp. MCS] gi|119695217|gb|ABL92290.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Mycobacterium sp. KMS] Length=347 Score = 452 bits (1163), Expect = 4e-125, Method: Compositional matrix adjust. Identities = 243/345 (71%), Positives = 272/345 (79%), Gaps = 1/345 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQELWF +IAALFLGF +LEGFDFGVGMLMAP VG G PET RR LNTIGPVWD NE Sbjct 3 LQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGTPETRRRAVLNTIGPVWDANE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAGA++FAAFP WYATVFSALYLPLLAILFGMILR V IEWRGKIDDP WR AD+ Sbjct 63 VWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRADW 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGH-VALSIPDVLNAYTLLGGLATAGLFSLYG 181 GIA GSWLPA+LWGVAFA+LVRGLPVDA V L+ DV+NAYTLLGGLAT LF YG Sbjct 123 GIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSLFLFYG 182 Query 182 AVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAA 241 + F+ALKTSGP+RDDA+RF LS PV L GFGLWTQLAYGK WTW LA A A Sbjct 183 STFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVALLV 242 Query 242 ATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTL 301 A L+W +GWAF+ T++VVAAV L+FG LYP L+ STLNP+W +TI N SSTPYTL Sbjct 243 AVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPYTL 302 Query 302 KIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 KIM+W + PL + YQ WTYWVFRQRISA+RIP GL+++AP Sbjct 303 KIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQAP 347 >gi|120403813|ref|YP_953642.1| cytochrome d ubiquinol oxidase subunit II [Mycobacterium vanbaalenii PYR-1] gi|119956631|gb|ABM13636.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Mycobacterium vanbaalenii PYR-1] Length=346 Score = 447 bits (1150), Expect = 1e-123, Method: Compositional matrix adjust. Identities = 233/342 (69%), Positives = 277/342 (81%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQELWF +IA LFLGF +LEGFDFGVGMLM+P +G GDP+ RR LNTIGPVWD NE Sbjct 3 LQELWFLLIAVLFLGFLVLEGFDFGVGMLMSPMGTIGPGDPDDRRRAVLNTIGPVWDANE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAGAA+FAAFP WYAT+FSALYLPLLAILFGMILR V IEWRGKI+DP+WR AD Sbjct 63 VWLITAGAAMFAAFPNWYATLFSALYLPLLAILFGMILRIVGIEWRGKINDPQWRRWADI 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIA GSWLPA+LWGVAFAIL+RGLP+DA+G I D+L+AYTLLGGLATA LF YG+ Sbjct 123 GIALGSWLPAVLWGVAFAILLRGLPIDADGRAHPGIGDILSAYTLLGGLATASLFLFYGS 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 V++AL+T+G + DD++R A LSLPV L GFGLWTQLAYGK WTWL LAVA A + Sbjct 183 VYLALRTAGALHDDSFRVARVLSLPVIVLAGGFGLWTQLAYGKPWTWLALAVAVVALLIS 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 LVW+ +G AF+ ++V+AAV VL+FG++YPNL+PSTLNP+WS+TI+N SSTPYTL+ Sbjct 243 VALVWKGFREGVAFVSMVVVIAAVAVLIFGSMYPNLLPSTLNPEWSVTIYNGSSTPYTLR 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 IMTW + PL +AYQ W+YWVFR+RI+AE IP GL+RR Sbjct 303 IMTWASLTLLPLVLAYQAWSYWVFRKRITAESIPASIGLSRR 344 >gi|145224170|ref|YP_001134848.1| cytochrome d ubiquinol oxidase subunit II [Mycobacterium gilvum PYR-GCK] gi|315444505|ref|YP_004077384.1| cytochrome d oxidase cyd, subunit II [Mycobacterium sp. Spyr1] gi|145216656|gb|ABP46060.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Mycobacterium gilvum PYR-GCK] gi|315262808|gb|ADT99549.1| cytochrome d oxidase cyd, subunit II [Mycobacterium sp. Spyr1] Length=346 Score = 441 bits (1134), Expect = 9e-122, Method: Compositional matrix adjust. Identities = 229/342 (67%), Positives = 275/342 (81%), Gaps = 0/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WF +IA LFLGF +LEGFDFGVGMLMAP +G GDP+ RR LNTIGPVWD NE Sbjct 3 LQEVWFLLIAVLFLGFLVLEGFDFGVGMLMAPMGTLGPGDPDNRRRAVLNTIGPVWDANE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAGAA+FAAFP WYAT+FSALYLPLLAILFGMILR V IEWRGKI+DP+WR AD+ Sbjct 63 VWLITAGAAMFAAFPVWYATLFSALYLPLLAILFGMILRIVGIEWRGKINDPQWRRWADY 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIAAGSWLPA+LWGVAFAIL+RGLP+DA G ++ DVL+ YTLLGGLAT LF YG+ Sbjct 123 GIAAGSWLPAVLWGVAFAILLRGLPIDAEGRTDIAFGDVLSPYTLLGGLATGSLFLFYGS 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 V++ALKTSG +R+DA+R LS+PV L GFGLWTQLAYG+ WTW+ LA A A AA Sbjct 183 VYLALKTSGVLREDAFRVGKALSVPVIVLAGGFGLWTQLAYGRPWTWIALAAAVVALLAA 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 L+W + +G AF+ ++V+AAV VL+FG++YPNL+PSTLNP+WS+TI+N SSTPYTL+ Sbjct 243 VALMWGQTREGIAFVSMVVVIAAVAVLIFGSMYPNLLPSTLNPEWSVTIYNGSSTPYTLR 302 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 IMTW + PL + YQ W+YWVFR+R++AE IP GL RR Sbjct 303 IMTWASLALLPLVLGYQAWSYWVFRKRVTAESIPESIGLTRR 344 >gi|118469342|ref|YP_887545.1| cytochrome D ubiquinol oxidase subunit II [Mycobacterium smegmatis str. MC2 155] gi|14670303|gb|AAF06812.2|AF196488_2 CydB [Mycobacterium smegmatis str. MC2 155] gi|118170629|gb|ABK71525.1| cytochrome D ubiquinol oxidase, subunit II [Mycobacterium smegmatis str. MC2 155] Length=350 Score = 440 bits (1131), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 236/347 (69%), Positives = 272/347 (79%), Gaps = 4/347 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPVWD 59 LQELWF ++A LFLGFF+LEGFDFGVGMLM+ F DPE +RR ALNTIGPVWD Sbjct 3 LQELWFILLAVLFLGFFLLEGFDFGVGMLMSFFGRAAEKRGQDPEPYRRAALNTIGPVWD 62 Query 60 GNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTG 119 GNEVWLITAG A+FAAFP YA++FS LYL LL IL MILR VAIEWRGKIDDP WR Sbjct 63 GNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWRRW 122 Query 120 ADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSI-PDVLNAYTLLGGLATAGLFS 178 AD GIA GSW+PA+LWGVAFA LVRGLPVDA+ + LS D+LNAYTLLGGLAT LF+ Sbjct 123 ADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCALFA 182 Query 179 LYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCA 238 +GAVF++LKTSG IR DA+ FA L+LP LVA FG+WTQ+A+G WTW+VLA A A Sbjct 183 FHGAVFVSLKTSGEIRTDAFGFARLLALPATALVAAFGVWTQVAHGTGWTWIVLAAAVIA 242 Query 239 QAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTP 298 Q A V+R +GWAF T +VVAAVVVLLFG+L+P+L+PSTLNP WSLTI+N SS+P Sbjct 243 QLVAVAQVFRGSGEGWAFGATSVVVAAVVVLLFGSLFPDLIPSTLNPDWSLTIYNGSSSP 302 Query 299 YTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345 YTLKIMTW FAPL V YQ WTYWVF +RISA+RIP P GL+RR+ Sbjct 303 YTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349 >gi|229488367|ref|ZP_04382233.1| cytochrome D ubiquinol oxidase, subunit II [Rhodococcus erythropolis SK121] gi|229323871|gb|EEN89626.1| cytochrome D ubiquinol oxidase, subunit II [Rhodococcus erythropolis SK121] Length=347 Score = 393 bits (1010), Expect = 2e-107, Method: Compositional matrix adjust. Identities = 202/340 (60%), Positives = 252/340 (75%), Gaps = 3/340 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDP-ETHRRTALNTIGPVWDGN 61 LQE+WF ++A LF+G+F+LEGFDFGVGMLM P G P +T RR ALNTIGPVWDGN Sbjct 3 LQEVWFVLVAVLFIGYFVLEGFDFGVGMLM-PIVGRGSDLPADTRRRVALNTIGPVWDGN 61 Query 62 EVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGAD 121 EVWLITAG A+FAAFP WYAT+FS YLPLL IL +I+R AIEWR KIDD KWR D Sbjct 62 EVWLITAGGAMFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEWRSKIDDDKWRQRCD 121 Query 122 FGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYG 181 +GI GSW+PA+LWGVAFA +VRG+ ++A+ V D+LN Y LLGGL TA +F+L+G Sbjct 122 WGIIFGSWVPAVLWGVAFANIVRGVAINADKQVESGFFDLLNPYALLGGLTTALVFALHG 181 Query 182 AVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAA 241 AVF+ALK++ +R+DA + A L++P + GF LWTQLAYGK WTW +L A A Sbjct 182 AVFLALKSADEVREDAVKIAARLAIPAIPVAGGFVLWTQLAYGKGWTW-ILVAAAAAALI 240 Query 242 ATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTL 301 V + R +GWAF+ T + V A VVLLF +L+PN++PSTL+P +SLTI NASS+PYTL Sbjct 241 GVVFLTRAEREGWAFVLTCVAVIATVVLLFASLFPNVMPSTLDPAYSLTIENASSSPYTL 300 Query 302 KIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 K+MTW AF P+ + YQ WTYWVFRQRIS+++IP GL Sbjct 301 KVMTWAAAFMTPVVIIYQGWTYWVFRQRISSKQIPASIGL 340 >gi|226308304|ref|YP_002768264.1| cytochrome bd-type menaquinol oxidase subunit II [Rhodococcus erythropolis PR4] gi|226187421|dbj|BAH35525.1| cytochrome bd-type menaquinol oxidase subunit II [Rhodococcus erythropolis PR4] Length=347 Score = 393 bits (1010), Expect = 2e-107, Method: Compositional matrix adjust. Identities = 202/340 (60%), Positives = 252/340 (75%), Gaps = 3/340 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDP-ETHRRTALNTIGPVWDGN 61 LQE+WF ++A LF+G+F+LEGFDFGVGMLM P G P +T RR ALNTIGPVWDGN Sbjct 3 LQEVWFVLVAVLFIGYFVLEGFDFGVGMLM-PIVGRGSDLPADTRRRVALNTIGPVWDGN 61 Query 62 EVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGAD 121 EVWLITAG A+FAAFP WYAT+FS YLPLL IL +I+R AIEWR KIDD KWR D Sbjct 62 EVWLITAGGAMFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEWRSKIDDDKWRQRCD 121 Query 122 FGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYG 181 +GI GSW+PA+LWGVAFA +VRG+ ++A+ V D+LN Y LLGGL TA +F+L+G Sbjct 122 WGIIFGSWVPAILWGVAFANIVRGVAINADKQVESGFFDLLNPYALLGGLTTALVFALHG 181 Query 182 AVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAA 241 AVF+ALK++ +R+DA + A L++P + GF LWTQLAYGK WTW +L A A Sbjct 182 AVFLALKSADEVREDAVKIAARLAIPAIPVAGGFVLWTQLAYGKGWTW-ILVAAAAAALI 240 Query 242 ATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTL 301 V + R +GWAF+ T + V A VVLLF +L+PN++PSTL+P +SLTI NASS+PYTL Sbjct 241 GVVFLTRAEREGWAFVLTCVAVIATVVLLFASLFPNVMPSTLDPAYSLTIENASSSPYTL 300 Query 302 KIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 K+MTW AF P+ + YQ WTYWVFRQRIS+++IP GL Sbjct 301 KVMTWAAAFMTPVVIIYQGWTYWVFRQRISSKQIPASIGL 340 >gi|226364341|ref|YP_002782123.1| cytochrome bd-type menaquinol oxidase subunit II [Rhodococcus opacus B4] gi|226242830|dbj|BAH53178.1| cytochrome bd-type menaquinol oxidase subunit II [Rhodococcus opacus B4] Length=345 Score = 385 bits (989), Expect = 6e-105, Method: Compositional matrix adjust. Identities = 195/339 (58%), Positives = 243/339 (72%), Gaps = 1/339 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WF +IA LF+G+F+LEGFDFGVGMLM + +T RR LNTIGPVWDGNE Sbjct 3 LQEVWFILIAVLFIGYFVLEGFDFGVGMLMPVLGRRKDPEGDTRRRVVLNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLIT G A+FAAFP WYAT+FS YLPLL IL +I+R AIE+RGKIDD WR D+ Sbjct 63 VWLITGGGALFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEYRGKIDDDTWRRRCDW 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSW+PA+LWGVAFA +VRG+ +DA+ V ++ D+LN Y LLGGL TA +F+L+GA Sbjct 123 GIVFGSWVPAVLWGVAFANIVRGVDIDADKQVTSNLFDLLNPYALLGGLTTALVFALHGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT+ +R DA A L+LP + F LWTQLA+G WTW ++ +A A Sbjct 183 VFLALKTADEVRTDAVELASRLALPAVPVAGAFVLWTQLAHGTGWTWFLVVIAAGALLGV 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 R +GWAF+ T I V A V LLFG+L+P+++PSTL+ +SLTI NASS+PYTLK Sbjct 243 VAFT-RAEREGWAFLLTSIAVIATVALLFGSLFPDVMPSTLDAAYSLTIENASSSPYTLK 301 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 +MTW AF P+ + YQ WTYWVFRQRIS + IPP GL Sbjct 302 VMTWAAAFLTPVVLIYQGWTYWVFRQRISTKHIPPSIGL 340 >gi|169629716|ref|YP_001703365.1| cytochrome D ubiquinol oxydase CydB [Mycobacterium abscessus ATCC 19977] gi|169241683|emb|CAM62711.1| Probable cytochrome D ubiquinol oxydase CydB [Mycobacterium abscessus] Length=342 Score = 384 bits (986), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 214/342 (63%), Positives = 249/342 (73%), Gaps = 5/342 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQ+ WF V+A LFLGF +LEGFDFGVGMLM P RR LNTIGPVWDGNE Sbjct 6 LQQFWFVVVAVLFLGFLVLEGFDFGVGMLMHPLGRGDD----RRRRAVLNTIGPVWDGNE 61 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAG A+FAAFP WYATVFS LYLPLL IL MI+R VAIEWRGKIDDP+WR D Sbjct 62 VWLITAGGAMFAAFPHWYATVFSGLYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCDL 121 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GIA GSW+PALLWGVAF+ L+ GLPVD + L++ DVL Y LLGG+ GLF+L+GA Sbjct 122 GIAIGSWIPALLWGVAFSSLLAGLPVDGAKQLTLTVGDVLRPYVLLGGVVFVGLFALHGA 181 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 +FI LKTSG +RDDA +A L+ PV G+GLWTQLAYG WTW+ L A + AA Sbjct 182 LFICLKTSGVVRDDAVAWARKLAAPVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVAA 241 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 + R DGWAF CT + V AVV LLFG+LYPNL+ S L+P ++LTI NASS+PYTLK Sbjct 242 ALAS-RISRDGWAFACTCLTVVAVVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLK 300 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +M+W A AP+ + YQ WTYWVFRQRISAE+IP P GL R Sbjct 301 VMSWAAAITAPVVLVYQGWTYWVFRQRISAEQIPDPVGLTVR 342 >gi|111021819|ref|YP_704791.1| cytochrome bd ubiquinol oxidase subunit II [Rhodococcus jostii RHA1] gi|110821349|gb|ABG96633.1| cytochrome bd ubiquinol oxidase subunit II [Rhodococcus jostii RHA1] Length=345 Score = 381 bits (979), Expect = 7e-104, Method: Compositional matrix adjust. Identities = 197/339 (59%), Positives = 246/339 (73%), Gaps = 1/339 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE+WF +IA LF+G+F+LEGFDFGVGMLM + +T RR LNTIGPVWDGNE Sbjct 3 LQEVWFILIAVLFIGYFVLEGFDFGVGMLMPVLGRRKDPNGDTRRRVVLNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLIT G A+FAAFP WYAT+FS YLPLL IL +I+R AIE+RGKIDD WR D+ Sbjct 63 VWLITGGGALFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEYRGKIDDDTWRRRCDW 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSW+PA+LWGVAFA +VRG+ +DA+ V S+ D+LN Y LLGGL TA +F+L+GA Sbjct 123 GIVFGSWVPAVLWGVAFANIVRGVDIDADKQVTSSLFDLLNPYALLGGLTTALVFALHGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT+ +R DA A L++P + F LWTQLA+GK WTW+++A+A A Sbjct 183 VFLALKTADEVRTDAVELASRLAIPAVPVAGAFVLWTQLAHGKGWTWILVAIAAAALLGV 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 R +GWAF+ T I V A V LLFG+L+PN++PSTL+ ++LTI NASS+PYTLK Sbjct 243 VAFT-RAEREGWAFLLTSIAVIATVALLFGSLFPNVMPSTLDAAYNLTIDNASSSPYTLK 301 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 +MTW AF P+ + YQ WTYWVFRQRIS + IPP GL Sbjct 302 VMTWAAAFLTPVVLIYQGWTYWVFRQRISTKHIPPSIGL 340 >gi|262200951|ref|YP_003272159.1| cytochrome d ubiquinol oxidase subunit II [Gordonia bronchialis DSM 43247] gi|262084298|gb|ACY20266.1| cytochrome d ubiquinol oxidase, subunit II [Gordonia bronchialis DSM 43247] Length=360 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 196/358 (55%), Positives = 245/358 (69%), Gaps = 16/358 (4%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPF---AHVGMGD----------PETHRRT 49 L E WF VIA LF+G+F+LEGFDFGVGMLM PF +H G D P+ RR Sbjct 3 LPEFWFLVIAVLFVGYFVLEGFDFGVGMLM-PFLGHSHTGGDDVVAPTDELAGPDNRRRA 61 Query 50 ALNTIGPVWDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRG 109 LNTIGPVWDGNEVWLITAG A+FAAF GWYAT+F+A YLPL IL G+I+R AIEWRG Sbjct 62 ILNTIGPVWDGNEVWLITAGGAMFAAFGGWYATMFTAFYLPLFLILIGLIVRICAIEWRG 121 Query 110 KIDDPKWRTGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLG 169 KID+P+WR AD GI GSW+PALLWGVAFA ++RG+P+DA+ ++LN Y LLG Sbjct 122 KIDNPRWRMWADIGIGLGSWIPALLWGVAFANVIRGIPIDADAQYTGGFFNLLNPYALLG 181 Query 170 GLATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTW 229 G T F +GAVF+ALKTSG +++D+ R+A L++P + A F LWTQLAYG WTW Sbjct 182 GATTLLAFLTHGAVFLALKTSGVLQEDSMRYASRLAIPTLVVAAVFLLWTQLAYGNGWTW 241 Query 230 LVLAVAGCAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSL 289 + + +A A A + R +G AF+ T I +A V LF LYPN++PS+ +P ++L Sbjct 242 IPVLIAAVAAVAMVIATQLR-REGIAFLATSIAIAGTVAALFAVLYPNVLPSSTDPAYNL 300 Query 290 TIHNASSTPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL-ARRAP 346 TI N SS+ YTL +MTW P+ + YQ WTYWVFRQRIS + IP PTGL + R P Sbjct 301 TIANTSSSSYTLTVMTWAAVIVTPVVIGYQAWTYWVFRQRISVDHIPAPTGLPSLRVP 358 >gi|326384532|ref|ZP_08206211.1| cytochrome bd-type menaquinol oxidase subunit II [Gordonia neofelifaecis NRRL B-59395] gi|326196666|gb|EGD53861.1| cytochrome bd-type menaquinol oxidase subunit II [Gordonia neofelifaecis NRRL B-59395] Length=347 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 184/339 (55%), Positives = 237/339 (70%), Gaps = 1/339 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L+ WF VIA LF +F+LEGFDFGVGMLM+ D + RR LNTIGPVWDGNE Sbjct 3 LENFWFLVIAVLFTMYFVLEGFDFGVGMLMSFLGRHSEPDGDKRRRVLLNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+T G A+FAAF GWYAT+FSA YLPL IL G+I+R VAIEWRGKI+D +WR D Sbjct 63 VWLLTGGGALFAAFGGWYATMFSAFYLPLFLILIGLIVRVVAIEWRGKINDVRWRRWCDV 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSW+PA+LWGVAFA +VRGLP+DA+ ++LN Y LLGG T F +GA Sbjct 123 GIGLGSWIPAILWGVAFANVVRGLPIDADHQYTGGFFNLLNPYALLGGATTLLAFLTHGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKTSG +RDDA FA L++P A + A F +WTQLAYG+ WTW ++ +A A Sbjct 183 VFVALKTSGQMRDDAQTFAARLAIPTAVVAAAFLIWTQLAYGEAWTWAIVVIAAVAAVGM 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 V R +GWAF+ T I +A + +LFG+L+P+++PST + + LT+ N SS+ YTL Sbjct 243 VVATAAR-REGWAFVATCIAIAGTIAMLFGSLFPDVLPSTTDAAYDLTVANTSSSHYTLV 301 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 IMTW A P+ +AYQ ++YW+FR+R+S ++IPP GL Sbjct 302 IMTWAAAIMTPVVIAYQGYSYWIFRKRLSVDQIPPSIGL 340 >gi|333918384|ref|YP_004491965.1| cytochrome bd-type menaquinol oxidase subunit II [Amycolicicoccus subflavus DQS3-9A1] gi|333480605|gb|AEF39165.1| Cytochrome bd-type menaquinol oxidase subunit II [Amycolicicoccus subflavus DQS3-9A1] Length=344 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 187/342 (55%), Positives = 236/342 (70%), Gaps = 1/342 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L LWF +IA LFLG+F+LEGFDFGVGMLM + + RR LNTIGPVWDGNE Sbjct 3 LTTLWFILIAFLFLGYFVLEGFDFGVGMLMPFLGRKSRMNADKRRRATLNTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAG A+FAAFP WYAT+FS Y+PLL IL +I RAVAIE+RGKIDD +WR D Sbjct 63 VWLITAGGALFAAFPDWYATLFSGFYIPLLLILLALIFRAVAIEFRGKIDDDQWRARCDA 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSWLPA+LWG+ FA +V G P+D N + L+ Y +LGG+ T LF L+GA Sbjct 123 GIIIGSWLPAILWGMVFAAVVSGTPIDENKQITNMWEAFLSPYAILGGITTTMLFLLHGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT G +R DA + A L+ + GF +WTQLAYG TW+ VA Sbjct 183 VFVALKTGGEVRADAIKAAGLLAPATLLVAGGFAVWTQLAYGSTLTWVFTWVAAIGLIVT 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 V+ R+ +GW F+ T I VAA LLFG+L+P+++PS+LNP+WSLT+ A+S+PYTL+ Sbjct 243 VVMTARQ-REGWTFVATFITVAAATALLFGSLFPDVMPSSLNPEWSLTVAEAASSPYTLR 301 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 ++TW AF AP+ + YQ WTYWVFR+RI+ E+IPP GL R Sbjct 302 VLTWAAAFLAPVVMIYQGWTYWVFRKRITTEQIPPSIGLKMR 343 >gi|54022553|ref|YP_116795.1| putative cytochrome D ubiquinol oxidase subunit II [Nocardia farcinica IFM 10152] gi|54014061|dbj|BAD55431.1| putative cytochrome D ubiquinol oxidase subunit II [Nocardia farcinica IFM 10152] Length=343 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 201/344 (59%), Positives = 242/344 (71%), Gaps = 9/344 (2%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L E WF +I LF G+F+LEGFDFGVGMLM +G G + RR LNTIGPVWDGNE Sbjct 3 LAEFWFVLIGVLFTGYFVLEGFDFGVGMLMP---VLGKGS-DARRRAVLNTIGPVWDGNE 58 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAG A+FAAFP WYA++FS YL LL +L +ILR AIE+RGKIDDP+WR D Sbjct 59 VWLITAGGALFAAFPEWYASMFSGFYLALLLVLVALILRICAIEYRGKIDDPRWRARCDI 118 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSW+PA WG FA +VRG+P+DA+ + SI D+ + Y LLG LAT LF+L+GA Sbjct 119 GIGIGSWVPAFAWGWVFANIVRGVPLDADKQLVGSIGDLFSPYALLGALATGLLFALHGA 178 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVA--GCAQA 240 +F+ LKT G +R DA R A L P A +V GFGLWTQLAYG DWTW+ L VA G A Sbjct 179 IFLGLKTGGDVRADAVRVAKLLLGPAALVVGGFGLWTQLAYGADWTWIPLGVAVIGLVGA 238 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 AA V R DGWAF T + VAA VLLFG+L+PN++PST++ +SLT+ NASSTPYT Sbjct 239 AAAVFADR---DGWAFAGTALTVAAATVLLFGSLFPNVLPSTISDAFSLTVDNASSTPYT 295 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 LK+M+W P+ + YQ WTYWVFR+RIS E IP P GL R Sbjct 296 LKVMSWAAVVVTPVVLGYQAWTYWVFRKRISVEHIPAPVGLTPR 339 >gi|343925905|ref|ZP_08765420.1| cytochrome bd-type menaquinol oxidase subunit II [Gordonia alkanivorans NBRC 16433] gi|343764256|dbj|GAA12346.1| cytochrome bd-type menaquinol oxidase subunit II [Gordonia alkanivorans NBRC 16433] Length=360 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 190/355 (54%), Positives = 236/355 (67%), Gaps = 21/355 (5%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPF---AHVG----------MGDPETHRRT 49 L E+WF +IA LF+G+F+LEGFD+GVGMLM PF +H G DP+T RR Sbjct 3 LPEVWFLIIAVLFVGYFVLEGFDYGVGMLM-PFLGRSHTGGDARVASDEPAADPDTRRRV 61 Query 50 ALNTIGPVWDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRG 109 LNTIGPVWDGNEVWLITAG A+FAAF GWYAT+FSA Y L IL G+I R AIEWRG Sbjct 62 LLNTIGPVWDGNEVWLITAGGALFAAFGGWYATMFSAFYFALFLILIGLITRVCAIEWRG 121 Query 110 KIDDPKWRTGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLG 169 KID+P+WR D GI GSW+PA++WG+AFA +VRGLP+DA+ D+ N Y LLG Sbjct 122 KIDNPRWRMWCDVGIGLGSWIPAIVWGIAFANVVRGLPIDADAQYTGGFFDLFNPYALLG 181 Query 170 GLATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTW 229 GL T F +GAVF++LKT G +R+D+ R+A LS+P + F LWTQ AYG WTW Sbjct 182 GLTTLLAFLTHGAVFLSLKTDGALREDSMRYASRLSIPTLVVAGAFLLWTQFAYGSAWTW 241 Query 230 ---LVLAVAGCAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQ 286 L AVA AT + +G AF T I + V LFG+LYP+++PST+NP Sbjct 242 IPVLTAAVAALVMVGAT----QVRKEGLAFAATSIAIVGTVAALFGSLYPDVLPSTINPA 297 Query 287 WSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 + LTI N SS+ YTL +MTW P+ +AYQ WTYWVFR+R+S E +P P GL Sbjct 298 YDLTIDNTSSSHYTLVVMTWAAVLVTPVVIAYQAWTYWVFRKRLSVEIMPKPAGL 352 >gi|312138311|ref|YP_004005647.1| cytochrome d ubiquinol oxidase subunit ii cydb [Rhodococcus equi 103S] gi|325674771|ref|ZP_08154458.1| cytochrome D ubiquinol oxidase subunit II [Rhodococcus equi ATCC 33707] gi|311887650|emb|CBH46962.1| cytochrome d ubiquinol oxidase subunit II CydB [Rhodococcus equi 103S] gi|325554357|gb|EGD24032.1| cytochrome D ubiquinol oxidase subunit II [Rhodococcus equi ATCC 33707] Length=340 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 190/342 (56%), Positives = 241/342 (71%), Gaps = 6/342 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQE WF +IA LF+G+F+LEGFD+GVGML+ +G E RR +NTIGPVWDGNE Sbjct 3 LQEFWFILIAVLFVGYFVLEGFDYGVGMLLPV-----LGKTEIRRRVVINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI G A+FAAFP WYAT+FS YLPLL IL +ILR AIEWRGKIDD KWR AD Sbjct 58 VWLIVGGGALFAAFPDWYATLFSGFYLPLLLILVALILRICAIEWRGKIDDDKWRWRADL 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSW+PA+LWGVAFA +VRG+ ++A+ V D+LN Y LLGG+ T +F+L+GA Sbjct 118 GIMIGSWVPAVLWGVAFANIVRGVAINADKKVTSGFFDLLNPYALLGGITTGLVFALHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VFIALKT+ +R DA A L++P + GF LWTQLAYGK WTW+++A+A A A Sbjct 178 VFIALKTADDVRIDAAELAKKLAIPAVPVAGGFVLWTQLAYGKGWTWILVALAAVAVLAV 237 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 R +GWAF+ T + + VVLLF +LYPN++PST++ ++LTI NASS+PYTLK Sbjct 238 VFFT-RLEREGWAFVFTTLAIIGAVVLLFASLYPNVMPSTISDAYNLTIENASSSPYTLK 296 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 +M+W P+ + YQ WTYWVF +RIS + IPP GL + Sbjct 297 VMSWAAVILVPVVLVYQGWTYWVFSKRISTKHIPPSIGLPTK 338 >gi|229820108|ref|YP_002881634.1| cytochrome d ubiquinol oxidase, subunit II [Beutenbergia cavernae DSM 12333] gi|229566021|gb|ACQ79872.1| cytochrome d ubiquinol oxidase, subunit II [Beutenbergia cavernae DSM 12333] Length=345 Score = 335 bits (858), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 185/340 (55%), Positives = 237/340 (70%), Gaps = 7/340 (2%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L +WF +IA L++G+ +LEGFDFGVGMLM P A +T RR A+NTIGPVWDGNE Sbjct 3 LALVWFVLIALLWVGYLVLEGFDFGVGMLMRPLAK-----DDTDRRLAINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI AG A FAAFP WYAT+FS YLPLLAIL +I+R VA E+RGKIDD WR D+ Sbjct 58 VWLIVAGGATFAAFPEWYATLFSGFYLPLLAILVALIVRGVAFEYRGKIDDDAWRARWDW 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I GSW+PA+LWGVAFA VRG+P+DA+ + + +L+ + LLGG+ T LF +GA Sbjct 118 AITIGSWVPAVLWGVAFANFVRGVPIDADFQMVGGLTSLLSPFALLGGVVTTLLFLTHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKD-WTWLVLAVAGCAQAA 241 VF+ALKT+G A A L+ + A + LW Q+AY ++ WTW+ LAVA A Sbjct 178 VFLALKTAGDYSRRAQTVAARLAPVTLVVTAAWALWAQVAYSRNAWTWVALAVAALALVG 237 Query 242 ATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTL 301 V RR +GWAF + I +A+ VVL+FG+++P ++PS+++P +SLTI NASSTPYTL Sbjct 238 VVVATARR-REGWAFTLSAIAIASAVVLVFGSMFPAVMPSSIDPAFSLTISNASSTPYTL 296 Query 302 KIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL 341 +MTWV F PL +AYQ WTYWVFR+R+ E IPP TGL Sbjct 297 TLMTWVAGFLTPLVLAYQGWTYWVFRKRLIREVIPPHTGL 336 >gi|296141243|ref|YP_003648486.1| cytochrome d ubiquinol oxidase subunit II [Tsukamurella paurometabola DSM 20162] gi|296029377|gb|ADG80147.1| cytochrome d ubiquinol oxidase, subunit II [Tsukamurella paurometabola DSM 20162] Length=345 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 189/346 (55%), Positives = 243/346 (71%), Gaps = 4/346 (1%) Query 1 VVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG--DPETHRRTALNTIGPVW 58 + L + WF IA LF G+F+LEGFDFGVGMLM + D +T RR LNTIGPVW Sbjct 1 MTLPDYWFLAIAFLFTGYFVLEGFDFGVGMLMPIMGNRRRHPTDYDTRRRVLLNTIGPVW 60 Query 59 DGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRT 118 DGNEVWLITAGAA+FAAFP WYATVFS YL LLAIL G+I+R AIEWRGKI+DP+WR Sbjct 61 DGNEVWLITAGAAMFAAFPVWYATVFSGFYLVLLAILVGLIVRVCAIEWRGKINDPRWRG 120 Query 119 GADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFS 178 ADFGI GSW+PA WG+ FA ++ G+ + G + + D+LN Y LLGG+A GLF Sbjct 121 WADFGIGLGSWIPAFAWGLVFANILAGVELTERGRMTSEVWDLLNPYGLLGGIALLGLFL 180 Query 179 LYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCA 238 L+GA+F+ALK+ G +R DA R A + LPV + A F +WTQLA+GK WTW + VA Sbjct 181 LHGAIFVALKSDGAVRVDARRLASRMWLPVTVIGAAFAVWTQLAHGKAWTWGAVVVAATG 240 Query 239 QAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTP 298 AA +L+ RR + AF+ T VAAV VL+FG+L PN++ +T +P S++I +A+S+ Sbjct 241 LIAAGLLI-RRGRELAAFLSTSATVAAVSVLMFGSLAPNVLNAT-DPARSISIADAASSH 298 Query 299 YTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 YTL +M+W T P+ + YQ W+YWVFR+RISAE+IPP GL+ R Sbjct 299 YTLVVMSWCTIVLLPMVMIYQAWSYWVFRKRISAEQIPPSIGLSPR 344 >gi|269794460|ref|YP_003313915.1| cytochrome d oxidase cyd subunit II [Sanguibacter keddieii DSM 10542] gi|269096645|gb|ACZ21081.1| cytochrome d oxidase cyd, subunit II [Sanguibacter keddieii DSM 10542] Length=368 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 177/344 (52%), Positives = 224/344 (66%), Gaps = 6/344 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQ LWF +IA L+ G+ +LEGFDFGVGMLM +G E RR +NTIGPVWDGNE Sbjct 6 LQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPI-----LGRKEKDRRVMINTIGPVWDGNE 60 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAG A FAAFP WYA++FS Y+PL IL +I+R + E+R KI+D WR D Sbjct 61 VWLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDA 120 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 + GSWLP++LWGVAFA LVRG+ +DAN + +L+ + LLGG+ T LF +GA Sbjct 121 SVIIGSWLPSILWGVAFANLVRGVEMDANHTMTGGFFSLLSPFALLGGVVTMLLFLTHGA 180 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT G IR A R A S+ G+ LW QLAYG WTW +AVA A A Sbjct 181 VFVALKTEGDIRVRARRLAGMFSVASVVAAGGWALWAQLAYGTTWTWGAVAVAAAALVAV 240 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 V R +GWAF + + + A VVL+FG++YP+++P++ +P SL I NASST YTL Sbjct 241 VVSN-ARAREGWAFFWSALAILAAVVLIFGSMYPDVMPASNDPANSLNIRNASSTEYTLT 299 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 +MTWV F PL + YQ+WTYWVFR+RI IP P GL P Sbjct 300 VMTWVALFLTPLVLLYQSWTYWVFRKRIGTHHIPEPIGLPSLTP 343 >gi|269124621|ref|YP_003297991.1| cytochrome d ubiquinol oxidase subunit II [Thermomonospora curvata DSM 43183] gi|268309579|gb|ACY95953.1| cytochrome d ubiquinol oxidase, subunit II [Thermomonospora curvata DSM 43183] Length=363 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 176/344 (52%), Positives = 229/344 (67%), Gaps = 1/344 (0%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L +WF +IA L+ G+F+LEGFDFGVG+LM A +T RR +NTIGPVWDGNE Sbjct 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+ AG A FAAFP WYA++FS YL LL IL +I+R VA E+RGK+D +WR D Sbjct 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I GS +PALLWGVAFA +++G+P+DA H ++ +LN Y LLGGL T +F+L+GA Sbjct 123 AIFWGSAVPALLWGVAFANILQGVPLDAQHHYTGTLLTLLNPYALLGGLTTLTVFTLHGA 182 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT G +RD A R +L+ P + A F + T + +G WTW AVA A A Sbjct 183 VFLALKTRGHVRDQARRAVRYLAAPTVAIAAAFLVITGVRFGVPWTWATTAVAALALAGG 242 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 R DGWAF T + + A V +FG L+P ++PST++P +SLT+ NA+STPYTLK Sbjct 243 VAAALRG-RDGWAFTGTAVAIVATVATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLK 301 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 +MTWV F P+ +AYQ WTYWVFR+R++ E I PP AP Sbjct 302 VMTWVAVIFTPIVLAYQAWTYWVFRKRLTREAIVPPAPSGDGAP 345 >gi|256832879|ref|YP_003161606.1| cytochrome d ubiquinol oxidase, subunit II [Jonesia denitrificans DSM 20603] gi|256686410|gb|ACV09303.1| cytochrome d ubiquinol oxidase, subunit II [Jonesia denitrificans DSM 20603] Length=355 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 181/351 (52%), Positives = 226/351 (65%), Gaps = 20/351 (5%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L LWF +IA L+ G+ +LEGFDFGVGML+ +G E RR +NTIGPVWDGNE Sbjct 3 LSILWFILIAVLWTGYLVLEGFDFGVGMLLPV-----LGKSERERRAVINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAG A FAAFP WYA++FS YLPLL ILF +I R +A E+R KI+ P+W+ DF Sbjct 58 VWLLTAGGATFAAFPEWYASMFSGFYLPLLFILFALIFRGMAFEYRSKIETPRWKAWCDF 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSW PA+LWGVAFA LVRG+ ++ N S +L+ Y LLGG T LF +GA Sbjct 118 GIIFGSWTPAILWGVAFANLVRGVELNDNYDFVGSFFSLLSPYALLGGAVTLLLFLAHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFG---LWTQLAYGKDWTWLVLAVAGCAQ 239 +F+ALKT G +R DA R A S +AG + G +WTQL YG WTW +A Sbjct 178 LFLALKTDGKMRVDANRLA---SRFLAGAILAGGVWVVWTQLGYGAGWTW----IATGGA 230 Query 240 AAATVLVW---RRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296 AA VL W + +G AF + + A VVL+FG+LYPN++P +N +LTI NASS Sbjct 231 AAGLVLAWLFNKVGHEGRAFAASAAAILAAVVLIFGSLYPNVMPD-INGINNLTIENASS 289 Query 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGL-ARRAP 346 T YTL IMTWV P+ + YQ WT+WVFR+RI E IP P GL + R P Sbjct 290 TDYTLTIMTWVAVLLTPIVLLYQGWTFWVFRKRIKVEHIPDPIGLPSLRVP 340 >gi|296393662|ref|YP_003658546.1| cytochrome d ubiquinol oxidase subunit II [Segniliparus rotundus DSM 44985] gi|296180809|gb|ADG97715.1| cytochrome d ubiquinol oxidase, subunit II [Segniliparus rotundus DSM 44985] Length=352 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 174/342 (51%), Positives = 223/342 (66%), Gaps = 5/342 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L +WF ++A LF G+F+L+GFDFGVGML+ +G GD ET RR LN+IGPVWDGNE Sbjct 3 LTHVWFFLVAVLFGGYFLLDGFDFGVGMLIP---ILGRGD-ETKRRVLLNSIGPVWDGNE 58 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VW+ITA A+FAAFP WYA VFS Y PLL ILFG+I R V+IEWRGKI+DP+WR D Sbjct 59 VWVITAAGAMFAAFPQWYAAVFSGFYAPLLLILFGLIARVVSIEWRGKIEDPRWRRWCDA 118 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSWLPA+LWGV FA + G+P+ +G+V + D+L LLGG A+ LF ++GA Sbjct 119 GIGLGSWLPAILWGVVFADIAVGVPLTPDGYVDGGLSDLLQPAALLGGAASCLLFLVHGA 178 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF+ALKT G +R+ A R A L A + G L L AV G A Sbjct 179 VFVALKTDGDVREAARRLATRLVFAAAAAMLALGALVALRKSDALPALAGAV-GVLSLGA 237 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 L R V +GW+F+ T + V A+ VL FG+L+P+LV S P+ S+TI +A+S+PYTLK Sbjct 238 AALALRAVREGWSFLLTSVAVLALTVLFFGSLFPDLVVSAPFPERSITIESAASSPYTLK 297 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARR 344 IM W P + YQ+W+YWVFR+R+S IPP GL+ R Sbjct 298 IMAWAALLTGPFVLVYQSWSYWVFRKRVSKAHIPPSIGLSLR 339 >gi|302535628|ref|ZP_07287970.1| cytochrome d ubiquinol oxidase, subunit II [Streptomyces sp. C] gi|302444523|gb|EFL16339.1| cytochrome d ubiquinol oxidase, subunit II [Streptomyces sp. C] Length=333 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 166/333 (50%), Positives = 215/333 (65%), Gaps = 6/333 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L ++WF +IA L+ G+F LEGFDFG+G+L A T +R +NTIGPVWDGNE Sbjct 3 LHDVWFVLIAVLWTGYFFLEGFDFGIGVLTKLLAR-----DRTEKRVLINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAG A FAAFP WYAT+FS YLPLL IL +I+R VA E+R K + +W+ + Sbjct 58 VWLLTAGGATFAAFPEWYATLFSGFYLPLLIILGCLIVRGVAFEYRHKRSEERWQANWEH 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I S +PA LWGVAFA + RG+ +D + ++ D+LN Y++LGGL T LF+ +GA Sbjct 118 AIFWTSLIPAFLWGVAFANIARGVKIDQDMEYVGNVLDLLNVYSVLGGLVTLTLFTFHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF ALKT G IRD A A L + A L F +WTQ + G W+ + +AVA A A Sbjct 178 VFAALKTVGDIRDRARALATRLGVVTAVLALAFLIWTQASRGDVWSLVAMAVAVLALVGA 237 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 +GWAF + I +AA V +LF L+PN++PS+L+ WSLT+ NASSTPYTLK Sbjct 238 LAFNLAG-REGWAFALSGITIAAAVAMLFLTLFPNVMPSSLDAAWSLTVTNASSTPYTLK 296 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERI 335 IMTW A PL + YQ WTYWVFR+RI + I Sbjct 297 IMTWCAAVATPLVLLYQGWTYWVFRKRIGTQHI 329 >gi|317506789|ref|ZP_07964566.1| cytochrome oxidase subunit II protein [Segniliparus rugosus ATCC BAA-974] gi|316254921|gb|EFV14214.1| cytochrome oxidase subunit II protein [Segniliparus rugosus ATCC BAA-974] Length=361 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 186/348 (54%), Positives = 227/348 (66%), Gaps = 8/348 (2%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L WF ++A F G+F+LEGFDFGVGMLM +G D E RR LNTIGPVWDGNE Sbjct 3 LPHFWFLLVAVFFGGYFLLEGFDFGVGMLMP---ILGRSD-EVKRRVLLNTIGPVWDGNE 58 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VW+IT A+FAAFP WYAT+FS YLPLL ILFG+I+R V+IEWRGKI+DP+WR D Sbjct 59 VWVITGAGAMFAAFPQWYATLFSGFYLPLLLILFGLIVRVVSIEWRGKIEDPRWRRWCDV 118 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 GI GSWLPA+LWG+AF + G+P+D NG+V +P +L LLGG AT LF L+GA Sbjct 119 GIGLGSWLPAILWGIAFTDIAVGVPLDENGYVTGGLPVLLRPVALLGGAATCLLFLLHGA 178 Query 183 VFIALKTSGPIRDDAYRFAVWL---SLPVAGLVAGFGLWTQLAYGKDWTW-LVLAVAGCA 238 VF+ALKT G IR A R AV L + PV L+ W G+D A+ A Sbjct 179 VFVALKTEGEIRVAARRLAVGLVAGAAPVVLLLGWTVSWALGEQGRDMQLPFYAAILSSA 238 Query 239 QAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTP 298 A L R V +GWAF T V A+ VL FG+LYPNLV S P+ S+TI +A+S+P Sbjct 239 ALLAAALAVRLVREGWAFALTGASVLALAVLFFGSLYPNLVASLPYPERSVTIESAASSP 298 Query 299 YTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 YTLK+M W AP + YQ W+YWVFR+RISA +IPP GL+ R P Sbjct 299 YTLKVMAWAALGTAPFVLVYQGWSYWVFRKRISAAQIPPSIGLSPRLP 346 >gi|25027808|ref|NP_737862.1| putative cytochrome D ubiquinol oxidase subunit II [Corynebacterium efficiens YS-314] gi|259506198|ref|ZP_05749100.1| cytochrome D ubiquinol oxidase, subunit II [Corynebacterium efficiens YS-314] gi|23493091|dbj|BAC18062.1| putative cytochrome D ubiquinol oxidase subunit II [Corynebacterium efficiens YS-314] gi|259166175|gb|EEW50729.1| cytochrome D ubiquinol oxidase, subunit II [Corynebacterium efficiens YS-314] Length=340 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/342 (52%), Positives = 221/342 (65%), Gaps = 18/342 (5%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L ELWF +IA LF G+F+LEGFDFGVG+L+ PF +G E R L TIGPVWDGNE Sbjct 4 LPELWFVLIAVLFTGYFVLEGFDFGVGLLL-PF----LGRDERTRGALLKTIGPVWDGNE 58 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAG A+FAAFP WYAT+FS +YLPL IL +ILR V +EWR +++D WR D Sbjct 59 VWLITAGGALFAAFPEWYATLFSGMYLPLFLILVALILRIVGLEWRKQVNDATWRRWCDA 118 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVAL--SIPDVLNAYTLLGGLATAGLFSLY 180 I GSW PALLWG+ F+ ++ G+P+ A+ + ++ +LN Y LLG A LF+L+ Sbjct 119 AIIIGSWGPALLWGLVFSNIIAGMPIQADFTLDSLDALAAMLNPYALLGAAAFTALFTLH 178 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVA----GFGLWTQLAYGKDWTWLVLAVAG 236 G FI LKT+G +RD A R A W PV GL A + +WT LA+ W W+ Sbjct 179 GLAFIRLKTTGDVRDQA-RKAFW---PVFGLAAVTAVPYAVWTVLAHDGQW-WIAGIAVL 233 Query 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296 CA A ++ R DG AF+ + I V AV LLF AL+PN++P+TL SL I NASS Sbjct 234 CAVAGMGFMLANR--DGLAFLSSTISVVAVAALLFVALFPNVMPTTLVDGASLDIWNASS 291 Query 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPP 338 PYTL+I+TW PL +AYQ WTYWVFR+RI A+RI P Sbjct 292 NPYTLRILTWTALILTPLVLAYQGWTYWVFRKRIRADRIDAP 333 >gi|239989190|ref|ZP_04709854.1| putative cytochrome D ubiquinol oxidase subunit II [Streptomyces roseosporus NRRL 11379] gi|291446196|ref|ZP_06585586.1| cytochrome bd-I oxidase subunit II [Streptomyces roseosporus NRRL 15998] gi|291349143|gb|EFE76047.1| cytochrome bd-I oxidase subunit II [Streptomyces roseosporus NRRL 15998] Length=333 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 164/333 (50%), Positives = 216/333 (65%), Gaps = 6/333 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L ++WF +IA L+ G+F LEGFDFG+G+L A +R +NTIGPVWDGNE Sbjct 3 LHDVWFVLIAVLWTGYFFLEGFDFGIGVLTKLLAR-----DRKEKRVLINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAG A FAAFP WYAT+FS YLPLL ILF +I+R VA E+R K + +W+T + Sbjct 58 VWLLTAGGATFAAFPEWYATLFSGFYLPLLIILFCLIVRGVAFEYRAKRPEERWQTNWET 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I S +PA+LWGVAF +VRG+ +DA+ + D+LN Y +LGGL T LF+ +GA Sbjct 118 AIFWTSLIPAVLWGVAFGNIVRGVKIDADMEYVGNFWDLLNPYAILGGLVTLTLFTFHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF LKT+G IR A A+ L A L GF LWTQ G W+ L VA + AA Sbjct 178 VFAGLKTAGDIRVRARALALKLGPLTALLALGFLLWTQADNGDGWSLGALIVAVVSLLAA 237 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 V + +GW+F + + +AA V +LF L+PN++PS+LN W+LT+ NASS+PYTLK Sbjct 238 IGAV-AKGREGWSFAFSGVTIAAAVAMLFLTLFPNVMPSSLNDAWNLTVTNASSSPYTLK 296 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERI 335 IMTW P+ + YQ+WTYWVFR+RI + I Sbjct 297 IMTWCAGIATPIVLLYQSWTYWVFRKRIGTQHI 329 >gi|340793144|ref|YP_004758607.1| cytochrome bd-type menaquinol oxidase subunit 2 [Corynebacterium variabile DSM 44702] gi|340533054|gb|AEK35534.1| cytochrome bd-type menaquinol oxidase subunit 2 [Corynebacterium variabile DSM 44702] Length=374 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/356 (49%), Positives = 222/356 (63%), Gaps = 15/356 (4%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAH-----VGMGDPETHRRTALNTIGPV 57 L +WF ++ LF G+F+LEGFDFGVGML+ + R + TIGPV Sbjct 6 LPVVWFILLTVLFAGYFLLEGFDFGVGMLLPSAGRRDDADDPAAASDAARTGLVRTIGPV 65 Query 58 WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117 WDGNEVWLITAG A+FAAFPGWYA +FS YLPL IL +ILRAVA+EWRGK+D WR Sbjct 66 WDGNEVWLITAGGALFAAFPGWYAALFSGFYLPLFLILVALILRAVALEWRGKVDTLTWR 125 Query 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPD---VLNAYTLLGGLATA 174 D + SW+P +LWGVAFA LVRG+P+DA+ ++ + +LN Y LLG A Sbjct 126 RRCDLTVTVTSWMPPVLWGVAFANLVRGVPLDADQNMDSGLSTLIGLLNPYALLGAATFA 185 Query 175 GLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLV--L 232 +F L+G F+ L+T+G +RD R + +++ A A F +WTQLA+GK WTW+V Sbjct 186 CVFLLHGLSFLRLRTAGHLRDATDRLVIPVAVAAAVTGATFVIWTQLAHGKGWTWIVTAT 245 Query 233 AVAGCAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIH 292 AV G A A +L R D AF+ T + V + VVLLFG+LYP L+P+TL L I Sbjct 246 AVGGVLVAVAAML---RHRDATAFLATAVTVISAVVLLFGSLYPWLMPTTLADGVGLDIR 302 Query 293 NASSTPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERI--PPPTGLARRAP 346 NASS YTL +MTW F P +AYQ WTYWVFR+RI+A + P TG AP Sbjct 303 NASSADYTLTVMTWAALFLVPFVLAYQAWTYWVFRKRITAAPVVEPQRTGPGTAAP 358 >gi|38234469|ref|NP_940236.1| putative cytochrome ubiquinol oxidase subunit [Corynebacterium diphtheriae NCTC 13129] gi|38200732|emb|CAE50434.1| Putative cytochrome ubiquinol oxidase subunit [Corynebacterium diphtheriae] Length=324 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 176/333 (53%), Positives = 224/333 (68%), Gaps = 18/333 (5%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 LQ +WF ++A LF G+F+LEGFDFGVGML+ PF + R A+ IGPVWDGNE Sbjct 3 LQTVWFVLVAILFAGYFVLEGFDFGVGMLL-PFL------SKQERTAAIKAIGPVWDGNE 55 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAG A+FAAFP WYAT+FS YLPL IL G+ILR VA+EWRGK+D WR D Sbjct 56 VWLITAGGALFAAFPEWYATMFSGFYLPLFLILIGLILRGVALEWRGKVDTDVWRDRCDI 115 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPD---VLNAYTLLGGLATAGLFSL 179 GI GSW+PALLWGVAFA +V G+ +D++ H+ S+ +LN + LLGG+A +F L Sbjct 116 GIGIGSWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLNPFGLLGGVAFVLVFLL 175 Query 180 YGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTW--LVLAVAGC 237 +GA+F+ LKT + A L +P A + A F +WTQLA+G+ WTW LV+AV G Sbjct 176 HGALFLKLKTEITVMGS---LAGRLFIPAAVVGAVFLVWTQLAHGRGWTWAPLVIAVVGL 232 Query 238 AQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASST 297 AA + R DGWAF T +V+ V +LFG+L+PNL+P+TL SLTI+NASS+ Sbjct 233 VVAALGI---RGNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTLADGTSLTIYNASSS 289 Query 298 PYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRI 330 YTL +MTW PL + YQ WTYWVFRQR+ Sbjct 290 QYTLTMMTWAAVLVTPLVLLYQGWTYWVFRQRV 322 >gi|72161041|ref|YP_288698.1| cytochrome bd ubiquinol oxidase, subunit II [Thermobifida fusca YX] gi|71914773|gb|AAZ54675.1| cytochrome bd ubiquinol oxidase, subunit II [Thermobifida fusca YX] Length=342 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 174/335 (52%), Positives = 232/335 (70%), Gaps = 6/335 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L LWF IA L++G+F+LEGFDFGVG+L+ PF +G T RR +N IGPVWDGNE Sbjct 3 LPTLWFAAIAVLWIGYFVLEGFDFGVGILL-PF----LGKTNTDRRVMINAIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VW++TAG A+FAAFP WYA++FS YLPL +L +I+R VA E+RGK+D +WR D Sbjct 58 VWVLTAGGAMFAAFPAWYASLFSGFYLPLFLVLLALIVRGVAFEYRGKVDSVQWRARWDQ 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I GS +PALLWGVAFA +VRG+P+DA+ V ++ D+LN Y LLGGL T LF+L+GA Sbjct 118 AIFWGSAIPALLWGVAFANIVRGVPMDADHIVTANLLDLLNPYALLGGLTTLSLFTLHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 +F++LKT G +R A R ++L AGF LWTQ++YG WT ++A+A AA Sbjct 178 MFLSLKTGGEVRLQARRAVPMIALVAVPAAAGFLLWTQVSYGTTWTLPLVAIAALTLVAA 237 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 L R +GW+F T +A V+LFG+L+PN++PST NP +SLT+ NA+S YTL Sbjct 238 VALA-LRGREGWSFTATATTIAVATVVLFGSLFPNVLPSTTNPAYSLTVENAASADYTLS 296 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPP 337 +MTWV F P+ + YQ+W+YWVFR+RI+ E I P Sbjct 297 VMTWVAVIFLPVVLGYQSWSYWVFRKRITREHIEP 331 >gi|344045735|gb|EGV41405.1| cytochrome bd-type quinol oxidase, subunit 2 [Corynebacterium glutamicum S9114] Length=333 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/333 (49%), Positives = 216/333 (65%), Gaps = 8/333 (2%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L WF +IA LF G+F+LEGFDFGVG+L AP +G R T + TIGPVWDGNE Sbjct 3 LNTFWFILIAFLFSGYFLLEGFDFGVGIL-API----IGKDSAARNTVIRTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI AG A+FAAFP WYAT+FS +YLPL +L +I+R V +EWR K+DDP+W+ +D Sbjct 58 VWLIVAGGALFAAFPEWYATMFSGMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDR 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHV--ALSIPDVLNAYTLLGGLATAGLFSLY 180 I GSW P L+WG FA ++RG+P+ A+ + A ++P ++N + +LG LA LF+L+ Sbjct 118 AIFIGSWTPPLMWGFIFANILRGMPIKADHTIDAAAALPGMVNVFAILGALAFTALFALH 177 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 G FI LKT+G +R DA + A ++L A F LW +AYG+ W+W +LAV A Sbjct 178 GLAFIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSW-ILAVLIIAAV 236 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 + DG +F+ T + V VV LLF +L+PN++P+TL SL I NAS++ Y Sbjct 237 LGGAFALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASDYA 296 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAE 333 I+TW A APL V YQ WTYWVFR+R+ AE Sbjct 297 FTILTWTAAVIAPLVVLYQGWTYWVFRKRLHAE 329 >gi|145295292|ref|YP_001138113.1| hypothetical protein cgR_1232 [Corynebacterium glutamicum R] gi|140845212|dbj|BAF54211.1| hypothetical protein [Corynebacterium glutamicum R] Length=333 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/333 (49%), Positives = 216/333 (65%), Gaps = 8/333 (2%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L WF +IA LF G+F+LEGFDFGVG+L AP +G R T + TIGPVWDGNE Sbjct 3 LNTFWFILIAFLFSGYFLLEGFDFGVGIL-API----IGKDSAARNTVIRTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI AG A+FAAFP WYAT+FS +YLPL +L +I+R V +EWR K++DP+W+ +D Sbjct 58 VWLIVAGGALFAAFPEWYATMFSGMYLPLFLVLVSLIIRVVGLEWRKKVNDPRWQKWSDR 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHV--ALSIPDVLNAYTLLGGLATAGLFSLY 180 I GSW P L+WG FA ++RG+P+ AN + A ++P ++N + +LG LA LF+L+ Sbjct 118 AIFIGSWTPPLMWGFIFANILRGMPIKANHTIDAAAALPGMVNVFAILGALAFTALFALH 177 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 G FI LKT+G +R DA + A ++L A F LW +AYG+ W+W +LAV A Sbjct 178 GLAFIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSW-ILAVLIIAAV 236 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 + DG +F+ T + V VV LLF +L+PN++P+TL SL I NAS++ Y Sbjct 237 LGGAFALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASDYA 296 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAE 333 I+TW A APL V YQ WTYWVFR+R+ AE Sbjct 297 FTILTWTAAVIAPLVVLYQGWTYWVFRKRLHAE 329 >gi|328883761|emb|CCA57000.1| Cytochrome d ubiquinol oxidase subunit II [Streptomyces venezuelae ATCC 10712] Length=333 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 168/333 (51%), Positives = 220/333 (67%), Gaps = 6/333 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L ++WF +IA L++G+F LEGFDFG+G+L A G PE +R +NTIGPVWDGNE Sbjct 3 LHDVWFVLIAVLWIGYFFLEGFDFGIGVLTKVLAR---GRPE--KRVLINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAG A FAAFP WYAT+FS YLPLL IL +I+R VA E+R K + W+ + Sbjct 58 VWLLTAGGATFAAFPEWYATLFSGFYLPLLIILVCLIVRGVAFEYRVKRPEENWQRNWEA 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I S +PA LWGVAF +VRG+ +D N + D+LN Y LLGGL T LF+ +GA Sbjct 118 AIFWTSLIPAFLWGVAFGNIVRGVKIDGNMEYVGTFWDLLNPYALLGGLVTLTLFTFHGA 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF +LKT G IR A A+ L L A L F +WTQL G W+++ + +A A A Sbjct 178 VFASLKTVGDIRARARALALKLGLVTAVLALLFLVWTQLDSGDSWSFMAMVIAVVALVGA 237 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 + R +GW+F + I +AA V +LF AL+PN++PS+LN +WSLT+ NASS+PYTLK Sbjct 238 IGAI-RVGREGWSFALSGITIAAAVAMLFLALFPNVMPSSLNAEWSLTVTNASSSPYTLK 296 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERI 335 IMTW A PL + YQ+WTYWVFR+RI + + Sbjct 297 IMTWCAAIATPLVLLYQSWTYWVFRKRIGTQHL 329 >gi|19552374|ref|NP_600376.1| cytochrome bd-type quinol oxidase, subunit 2 [Corynebacterium glutamicum ATCC 13032] gi|62390038|ref|YP_225440.1| cytochrome D terminal oxidase polypeptide subunit [Corynebacterium glutamicum ATCC 13032] gi|21323916|dbj|BAB98542.1| Cytochrome bd-type quinol oxidase, subunit 2 [Corynebacterium glutamicum ATCC 13032] gi|41325374|emb|CAF19854.1| CYTOCHROME D TERMINAL OXIDASE POLYPEPTIDE SUBUNIT [Corynebacterium glutamicum ATCC 13032] Length=333 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/335 (49%), Positives = 217/335 (65%), Gaps = 8/335 (2%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L WF +IA LF G+F+LEGFDFGVG+L AP +G R T + TIGPVWDGNE Sbjct 3 LNTFWFILIAFLFAGYFLLEGFDFGVGIL-API----IGKDSAARNTVIRTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLI AG A+FAAFP WYAT+FS +YLPL +L +I+R V +EWR K+DDP+W+ +D Sbjct 58 VWLIVAGGALFAAFPEWYATMFSGMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDR 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHV--ALSIPDVLNAYTLLGGLATAGLFSLY 180 I GSW P L+WG FA ++RG+P+ A+ + A ++P ++N + +LG LA LF+L+ Sbjct 118 AIFIGSWTPPLMWGFIFANILRGMPLKADHTIDAAAALPGMVNVFAILGALAFTALFALH 177 Query 181 GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA 240 G FI LKT+G +R DA + A ++L A F LW +AYG+ W+W +LAV A Sbjct 178 GLAFIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSW-ILAVLIIAAV 236 Query 241 AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT 300 + DG +F+ T + V VV LLF +L+PN++P+TL SL I NAS++ Y Sbjct 237 LGGAFALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASAYA 296 Query 301 LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERI 335 I+TW A APL V YQ WTYWVFR+R+ AE + Sbjct 297 FTILTWTAAVIAPLVVLYQGWTYWVFRKRLHAEPV 331 >gi|182437438|ref|YP_001825157.1| putative cytochrome D ubiquinol oxidase subunit II [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778094|ref|ZP_08237359.1| cytochrome d ubiquinol oxidase, subunit II [Streptomyces cf. griseus XylebKG-1] gi|178465954|dbj|BAG20474.1| putative cytochrome D ubiquinol oxidase subunit II [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658427|gb|EGE43273.1| cytochrome d ubiquinol oxidase, subunit II [Streptomyces griseus XylebKG-1] Length=333 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/333 (48%), Positives = 212/333 (64%), Gaps = 6/333 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L ++WF +IA L+ G+F LEGFDFG+G+L A RR +NTIGPVWDGNE Sbjct 3 LHDVWFVLIAVLWTGYFFLEGFDFGIGVLTKLLAR-----DRKERRVLINTIGPVWDGNE 57 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL++AG A FAAFP WYAT+FS YLPLL ILF +I+R VA E+R K + +W+T + Sbjct 58 VWLLSAGGATFAAFPEWYATLFSGFYLPLLIILFCLIVRGVAFEYRAKRPEERWQTNWEN 117 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 I S +PA+LWGVAF +VRG+ +DA+ + D+LN Y +LGGL T LF+ +G Sbjct 118 AIFWTSLIPAVLWGVAFGNIVRGVKIDADMEYVGNFFDLLNPYAILGGLVTLTLFTFHGT 177 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAA 242 VF LKT+G IR A A+ L A L GF +WTQ G W+ + VA A Sbjct 178 VFAGLKTAGDIRVRARALALKLGPVTAVLALGFLVWTQADNGDAWSMGAMIVA-VVALLA 236 Query 243 TVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLK 302 + + +GW+F + + +AA V +LF L+PN++PS+LN W+LT+ NASS+PYTLK Sbjct 237 AIGAIAKGREGWSFAFSGVTIAAAVTMLFLTLFPNVMPSSLNDAWNLTVTNASSSPYTLK 296 Query 303 IMTWVTAFFAPLTVAYQTWTYWVFRQRISAERI 335 IMTW P+ + YQ WTYWVFR+RI + I Sbjct 297 IMTWCAGIATPVVLLYQGWTYWVFRKRIGTQHI 329 >gi|336320293|ref|YP_004600261.1| cytochrome d ubiquinol oxidase subunit II [Cellvibrio gilvus ATCC 13127] gi|336103874|gb|AEI11693.1| cytochrome d ubiquinol oxidase, subunit II [Cellvibrio gilvus ATCC 13127] Length=359 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 171/345 (50%), Positives = 219/345 (64%), Gaps = 5/345 (1%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L +WF +IA L+ G+ +LEGFDFGVGML+ D E RR +NTIGPVWDGNE Sbjct 3 LTTVWFVLIAVLWTGYLVLEGFDFGVGMLLGILPK--KEDKERERRVMINTIGPVWDGNE 60 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWL+TAG A FAAFP WYAT+FS YLPL IL +I+R VA EWRGKIDD +WR AD Sbjct 61 VWLLTAGGATFAAFPEWYATLFSGFYLPLFLILVALIVRVVAFEWRGKIDDDRWRAWADR 120 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGA 182 + GSWLP+ LWGVAFA +VRG+ +DA +LN + LLGG T +F +GA Sbjct 121 ALIFGSWLPSALWGVAFANIVRGVELDAAHEYVGGFWALLNPFALLGGAVTTLIFLTHGA 180 Query 183 VFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKD-WTWLVLAVAGCAQAA 241 +F+ALK+ G IR A A LS+ + + +W QLA+ WTW +AVA A Sbjct 181 IFLALKSDGDIRRRAGDLAARLSIVTVVVAGAWAVWLQLAFSDQAWTWAAVAVAAVALVG 240 Query 242 ATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTL 301 V R +G AF+ + + + A VVL+FG+L+P+++P+ + SLT+ NASST YTL Sbjct 241 VVVAT-RLRREGQAFIASAVAIVAAVVLIFGSLFPDVMPA-FDVANSLTVDNASSTDYTL 298 Query 302 KIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP 346 +MTWV PL + YQ WTYWVFR+R+S IP PTGL P Sbjct 299 TVMTWVAVILTPLVLLYQGWTYWVFRKRLSTADIPAPTGLTFTRP 343 >gi|300859120|ref|YP_003784103.1| cytochrome d ubiquinol oxidase subunit 2 [Corynebacterium pseudotuberculosis FRC41] gi|300686574|gb|ADK29496.1| cytochrome d ubiquinol oxidase subunit 2 [Corynebacterium pseudotuberculosis FRC41] gi|302206815|gb|ADL11157.1| Cytochrome d ubiquinol oxidase subunit 2 [Corynebacterium pseudotuberculosis C231] gi|302331377|gb|ADL21571.1| Cytochrome d ubiquinol oxidase subunit 2 [Corynebacterium pseudotuberculosis 1002] gi|308277067|gb|ADO26966.1| Cytochrome d ubiquinol oxidase subunit 2 [Corynebacterium pseudotuberculosis I19] gi|341825509|gb|AEK93030.1| Cytochrome d ubiquinol oxidase subunit 2 [Corynebacterium pseudotuberculosis PAT10] Length=327 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 175/333 (53%), Positives = 218/333 (66%), Gaps = 18/333 (5%) Query 3 LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62 L +WF ++ LF G+FILEGFDFGVGML+ H R A+ IGPVWDGNE Sbjct 3 LHIIWFILVGILFTGYFILEGFDFGVGMLLPFLKH-------RERDAAVKAIGPVWDGNE 55 Query 63 VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122 VWLITAG A+FAAFP WYAT+FS YLPL IL +ILR VA+EWR K+D WR D Sbjct 56 VWLITAGGALFAAFPEWYATMFSGFYLPLFLILISLILRGVALEWRSKVDTAAWRRWCDR 115 Query 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHV---ALSIPDVLNAYTLLGGLATAGLFSL 179 GI GSW+PALLWGVAFA +VRG+ VDAN + + +LN + LLGG A +F L Sbjct 116 GIGIGSWVPALLWGVAFANIVRGVAVDANRQIDSGLHGLLSLLNPFALLGGAAFVAVFLL 175 Query 180 YGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVA--GC 237 +GA F+ALKT+ +R A + P + A F LWTQL++GK WTW V+AV C Sbjct 176 HGATFLALKTN---IQPVHRVARVMIGPTIVVGAAFALWTQLSFGKTWTWAVVAVIVLAC 232 Query 238 AQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASST 297 A A+ L +RR DGWAF T +++ AV VLLFGAL+P+L+P+TL L I+NA+S+ Sbjct 233 AATVAS-LSFRR--DGWAFSATAVLICAVSVLLFGALFPSLLPTTLADGVGLDIYNAASS 289 Query 298 PYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRI 330 YTLK+MTW PL + YQ WTYWVFR R+ Sbjct 290 AYTLKVMTWAAVLITPLVLLYQGWTYWVFRARV 322 Lambda K H 0.328 0.141 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 636071322808 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40