BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1623c Length=485 Score E Sequences producing significant alignments: (Bits) Value gi|15841078|ref|NP_336115.1| cytochrome d ubiquinol oxidase, sub... 990 0.0 gi|340626629|ref|YP_004745081.1| putative integral membrane cyto... 983 0.0 gi|308231890|ref|ZP_07414146.2| membrane cytochrome D ubiquinol ... 923 0.0 gi|183982440|ref|YP_001850731.1| integral membrane cytochrome D ... 847 0.0 gi|240168000|ref|ZP_04746659.1| integral membrane cytochrome D u... 831 0.0 gi|339294578|gb|AEJ46689.1| cytochrome d ubiquinol oxidase, subu... 818 0.0 gi|296164491|ref|ZP_06847062.1| cytochrome D ubiquinol oxidase s... 816 0.0 gi|41407414|ref|NP_960250.1| AppC [Mycobacterium avium subsp. pa... 801 0.0 gi|342860806|ref|ZP_08717456.1| cytochrome D ubiquinol oxidase s... 800 0.0 gi|336457902|gb|EGO36895.1| cytochrome bd-type quinol oxidase, s... 797 0.0 gi|118465629|ref|YP_882347.1| cytochrome D ubiquinol oxidase sub... 797 0.0 gi|254775611|ref|ZP_05217127.1| cytochrome D ubiquinol oxidase s... 793 0.0 gi|118468540|ref|YP_887546.1| cytochrome D ubiquinol oxidase sub... 790 0.0 gi|254820974|ref|ZP_05225975.1| cytochrome D ubiquinol oxidase s... 786 0.0 gi|126435631|ref|YP_001071322.1| cytochrome bd ubiquinol oxidase... 763 0.0 gi|108800002|ref|YP_640199.1| cytochrome bd ubiquinol oxidase su... 761 0.0 gi|145224169|ref|YP_001134847.1| cytochrome bd ubiquinol oxidase... 744 0.0 gi|120403814|ref|YP_953643.1| cytochrome bd ubiquinol oxidase su... 730 0.0 gi|169629715|ref|YP_001703364.1| integral membrane cytochrome D ... 718 0.0 gi|54022552|ref|YP_116794.1| putative cytochrome D ubiquinol oxi... 697 0.0 gi|229488515|ref|ZP_04382381.1| cytochrome D ubiquinol oxidase s... 685 0.0 gi|226308305|ref|YP_002768265.1| cytochrome bd-type menaquinol o... 680 0.0 gi|312138310|ref|YP_004005646.1| cytochrome d ubiquinol oxidase ... 676 0.0 gi|325674772|ref|ZP_08154459.1| cytochrome D ubiquinol oxidase s... 675 0.0 gi|111021818|ref|YP_704790.1| cytochrome bd ubiquinol oxidase su... 671 0.0 gi|226364340|ref|YP_002782122.1| cytochrome bd-type menaquinol o... 670 0.0 gi|317506788|ref|ZP_07964565.1| cytochrome Ubiquinol Oxidase [Se... 662 0.0 gi|296393661|ref|YP_003658545.1| cytochrome bd ubiquinol oxidase... 661 0.0 gi|38234468|ref|NP_940235.1| putative cytochrome ubiquinol oxida... 620 2e-175 gi|25027809|ref|NP_737863.1| putative cytochrome D ubiquinol oxi... 616 3e-174 gi|333918383|ref|YP_004491964.1| cytochrome bd-type menaquinol o... 615 5e-174 gi|302206814|gb|ADL11156.1| Cytochrome d ubiquinol oxidase subun... 610 2e-172 gi|300859119|ref|YP_003784102.1| cytochrome d ubiquinol oxidase ... 609 3e-172 gi|340793145|ref|YP_004758608.1| cytochrome bd-type menaquinol o... 609 4e-172 gi|337291481|ref|YP_004630502.1| cytochrome bd-type menaquinol o... 606 2e-171 gi|334697506|gb|AEG82303.1| cytochrome bd-type menaquinol oxidas... 606 3e-171 gi|227506392|ref|ZP_03936441.1| possible cytochrome bd ubiquinol... 603 3e-170 gi|145295293|ref|YP_001138114.1| hypothetical protein cgR_1233 [... 601 9e-170 gi|344045734|gb|EGV41404.1| hypothetical protein CgS9114_03428 [... 601 9e-170 gi|19552375|ref|NP_600377.1| cytochrome bd-type quinol oxidase, ... 600 1e-169 gi|8698552|dbj|BAA96840.1| cytochrome bd-type menaquinol oxidase... 600 1e-169 gi|296118860|ref|ZP_06837435.1| cytochrome D ubiquinol oxidase, ... 595 4e-168 gi|227548599|ref|ZP_03978648.1| possible cytochrome bd ubiquinol... 593 1e-167 gi|269794461|ref|YP_003313916.1| cytochrome bd-type quinol oxida... 588 9e-166 gi|227548092|ref|ZP_03978141.1| cytochrome D ubiquinol oxidase s... 586 3e-165 gi|343925904|ref|ZP_08765419.1| cytochrome bd-type menaquinol ox... 571 1e-160 gi|256832878|ref|YP_003161605.1| cytochrome bd ubiquinol oxidase... 562 5e-158 gi|332670934|ref|YP_004453942.1| cytochrome bd ubiquinol oxidase... 561 1e-157 gi|326384533|ref|ZP_08206212.1| cytochrome bd ubiquinol oxidase ... 560 1e-157 gi|229820109|ref|YP_002881635.1| cytochrome bd ubiquinol oxidase... 557 1e-156 >gi|15841078|ref|NP_336115.1| cytochrome d ubiquinol oxidase, subunit I [Mycobacterium tuberculosis CDC1551] gi|31792809|ref|NP_855302.1| integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (cytochrome bd-I oxidase subunit I) [Mycobacterium bovis AF2122/97] gi|57116893|ref|YP_177824.1| integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (cytochrome bd-I oxidase subunit I) [Mycobacterium tuberculosis H37Rv] 62 more sequence titles Length=485 Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/485 (100%), Positives = 485/485 (100%), Gaps = 0/485 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ Sbjct 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL Sbjct 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF Sbjct 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW Sbjct 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA Sbjct 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 Query 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP 480 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP Sbjct 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP 480 Query 481 LSFAY 485 LSFAY Sbjct 481 LSFAY 485 >gi|340626629|ref|YP_004745081.1| putative integral membrane cytochrome D ubiquinol oxidase [Mycobacterium canettii CIPT 140010059] gi|340004819|emb|CCC43963.1| putative integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (cytochrome BD-I oxidase subunit I) [Mycobacterium canettii CIPT 140010059] Length=485 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/485 (99%), Positives = 482/485 (99%), Gaps = 0/485 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAEL+SIV LLTNNTAQ Sbjct 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELNSIVALLTNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL Sbjct 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF Sbjct 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LAEGR SGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW Sbjct 301 LAEGRTSGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA Sbjct 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 Query 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP 480 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAH APRDDEVAP Sbjct 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHRAPRDDEVAP 480 Query 481 LSFAY 485 LSFAY Sbjct 481 LSFAY 485 >gi|308231890|ref|ZP_07414146.2| membrane cytochrome D ubiquinol oxidase subunit I cydA [Mycobacterium tuberculosis SUMu001] gi|308369487|ref|ZP_07417958.2| membrane cytochrome D ubiquinol oxidase subunit I cydA [Mycobacterium tuberculosis SUMu002] gi|308370776|ref|ZP_07422675.2| membrane cytochrome D ubiquinol oxidase subunit I cydA [Mycobacterium tuberculosis SUMu003] 9 more sequence titles Length=451 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/451 (100%), Positives = 451/451 (100%), Gaps = 0/451 (0%) Query 35 MQTLWVVTDNPAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAP 94 MQTLWVVTDNPAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAP Sbjct 1 MQTLWVVTDNPAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAP 60 Query 95 LAMEGLAAFFFESTFIGLWIFGWNRLPRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPV 154 LAMEGLAAFFFESTFIGLWIFGWNRLPRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPV Sbjct 61 LAMEGLAAFFFESTFIGLWIFGWNRLPRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPV 120 Query 155 GAHYNPTTGRAELSSIVVLLTNNTAQAAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHA 214 GAHYNPTTGRAELSSIVVLLTNNTAQAAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHA Sbjct 121 GAHYNPTTGRAELSSIVVLLTNNTAQAAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHA 180 Query 215 DSDTQAMYRPATILGCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNF 274 DSDTQAMYRPATILGCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNF Sbjct 181 DSDTQAMYRPATILGCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNF 240 Query 275 SVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNL 334 SVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNL Sbjct 241 SVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNL 300 Query 335 FVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVF 394 FVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVF Sbjct 301 FVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVF 360 Query 395 TEMGRQPWVVVPNPTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKR 454 TEMGRQPWVVVPNPTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKR Sbjct 361 TEMGRQPWVVVPNPTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKR 420 Query 455 YIVEGPLEHDAEPAAHGAPRDDEVAPLSFAY 485 YIVEGPLEHDAEPAAHGAPRDDEVAPLSFAY Sbjct 421 YIVEGPLEHDAEPAAHGAPRDDEVAPLSFAY 451 >gi|183982440|ref|YP_001850731.1| integral membrane cytochrome D ubiquinol oxidase (subunit I) CydA [Mycobacterium marinum M] gi|183175766|gb|ACC40876.1| integral membrane cytochrome D ubiquinol oxidase (subunit I) CydA [Mycobacterium marinum M] Length=485 Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/485 (84%), Positives = 438/485 (91%), Gaps = 0/485 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVD+SRWQFGITTVYHFIFVPLTIGLAPL+A+MQT WV+TDNPAWYRLTKFFGKLFLI Sbjct 1 MNVVDVSRWQFGITTVYHFIFVPLTIGLAPLLAIMQTAWVITDNPAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLMAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAI+VNVSAFFII ANSFMQHPVGAHYNP T RAEL+SIV LLTNNT + Sbjct 121 PRLVHLACIWIVAISVNVSAFFIITANSFMQHPVGAHYNPETHRAELNSIVALLTNNTGR 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AF HTV+GA LTAGTFVAAVSAWWLVRS + T+AMYRPATILGCWVAL AT GL Sbjct 181 TAFAHTVTGAFLTAGTFVAAVSAWWLVRSKNSPVPPGTRAMYRPATILGCWVALIATVGL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 F+GD+QGKLMFQQQPMKMASAESLCDTQTDPNFS+LTVGRQNNCD LTRVIEVPYVLP Sbjct 241 FFSGDYQGKLMFQQQPMKMASAESLCDTQTDPNFSILTVGRQNNCDGLTRVIEVPYVLPI 300 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LA+GR + VTLQG+RDLQ++YQQRFGPNDYRPNLFVTYWSFR MIG +AIPVLFAL+ALW Sbjct 301 LAQGRPTNVTLQGVRDLQRDYQQRFGPNDYRPNLFVTYWSFRAMIGFLAIPVLFALLALW 360 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 LTRGG+IP++RWF W ALLT+P PFLAN +GWVFTEMGRQPW+V PNPTGD VRLTV Sbjct 361 LTRGGRIPDKRWFGWFALLTIPTPFLANISGWVFTEMGRQPWIVAPNPTGDPNVRLTVAT 420 Query 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP 480 VS+ + V TSL+ FTLVYAVLAVIW WLLKRYIVEGPLEHDAEPA AP DDEVAP Sbjct 421 AVSNLTTATVVTSLVTFTLVYAVLAVIWFWLLKRYIVEGPLEHDAEPAPPRAPDDDEVAP 480 Query 481 LSFAY 485 LSFAY Sbjct 481 LSFAY 485 >gi|240168000|ref|ZP_04746659.1| integral membrane cytochrome D ubiquinol oxidase (subunit I) CydA [Mycobacterium kansasii ATCC 12478] Length=485 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/485 (85%), Positives = 441/485 (91%), Gaps = 0/485 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGITTVYHFIFVPLTIGLAPL+AVMQT+WVVT N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLLAVMQTVWVVTGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTF+GLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLMAFFFESTFLGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAIAVNVSAFFII+ANSFMQHPVGAHYNP T RAEL+SI LLTNNTA Sbjct 121 PRLVHLACIWIVAIAVNVSAFFIISANSFMQHPVGAHYNPATKRAELNSITALLTNNTAI 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF+HTV+G+LLTAGTFVAAVSAWWLVRS T T+AMYRPATILGCWV L AT GL Sbjct 181 AAFSHTVAGSLLTAGTFVAAVSAWWLVRSKTAPVGPGTRAMYRPATILGCWVVLVATVGL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 FTGDHQGKLMF QQPMKMASAESLCDTQTDP+FS+LTVGRQNNCDSLTRV+EVPYVLP+ Sbjct 241 FFTGDHQGKLMFIQQPMKMASAESLCDTQTDPDFSILTVGRQNNCDSLTRVLEVPYVLPY 300 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LA+G+ +GVTLQG+R+LQQ+Y QRFGPNDYRPNLFVTYWSFR MIG +AIPVLFAL+ALW Sbjct 301 LAQGQTTGVTLQGVRNLQQDYNQRFGPNDYRPNLFVTYWSFRAMIGFLAIPVLFALLALW 360 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 LTRGG+IP +RWF+W ALLT+PAPFLAN GWVFTEMGRQPW+V PNPTGDQ VRLTV Sbjct 361 LTRGGRIPGRRWFAWFALLTIPAPFLANMFGWVFTEMGRQPWIVAPNPTGDQQVRLTVAT 420 Query 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP 480 VS+H +V TSL+ FTLVYAVLAVIW WLLKRY+VEGP EHDAEPAA AP DEVAP Sbjct 421 AVSNHPFGMVVTSLVTFTLVYAVLAVIWFWLLKRYVVEGPQEHDAEPAAPAAPGSDEVAP 480 Query 481 LSFAY 485 LSFAY Sbjct 481 LSFAY 485 >gi|339294578|gb|AEJ46689.1| cytochrome d ubiquinol oxidase, subunit I [Mycobacterium tuberculosis CCDC5079] Length=406 Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ Sbjct 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL Sbjct 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF Sbjct 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW Sbjct 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQP 401 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQP Sbjct 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQP 401 >gi|296164491|ref|ZP_06847062.1| cytochrome D ubiquinol oxidase subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900091|gb|EFG79526.1| cytochrome D ubiquinol oxidase subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] Length=490 Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/490 (80%), Positives = 432/490 (89%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGITTVYHFIFVPLTIGLAPL+AVMQT+WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLLAVMQTVWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVA VN SAFFII ANSFMQHPVGAHYNP T RAEL SI LL+NNTA+ Sbjct 121 PKLIHLACIWIVAFGVNASAFFIIVANSFMQHPVGAHYNPVTHRAELDSIGALLSNNTAR 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHADSDTQAMYRPATILGCWVALA 235 AAF+H V+G+L+TAGTFVAA+SAW+LVRS +T A+SD + M+RPA ILGCWV L Sbjct 181 AAFSHVVTGSLVTAGTFVAAISAWFLVRSRNAASATPAAESDARTMFRPAAILGCWVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 A GL FTGD QGKLMF QQPMKMASAE+LCDTQTDP+FSVLTVGR NNCD + VI+VP Sbjct 241 AAVGLFFTGDRQGKLMFVQQPMKMASAETLCDTQTDPDFSVLTVGRHNNCDGVKGVIQVP 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLPFLAEGRIS VTLQG+RD+Q +Y+QRFGPNDYRPN+FVTYWSFR MIG +AIP+LFA Sbjct 301 YVLPFLAEGRISDVTLQGVRDIQHDYEQRFGPNDYRPNMFVTYWSFRAMIGFLAIPLLFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 + ALWLTRGG+IPNQRWFSW ALLT+P PFLAN +GWVFTEMGRQPW+V PNPTGDQ VR Sbjct 361 VAALWLTRGGRIPNQRWFSWFALLTIPTPFLANISGWVFTEMGRQPWIVAPNPTGDQQVR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 TV+ VS+H++ +V TSL+ FTLVYAVLAVIW +LLKRYI EGPLEHDAEPA P D Sbjct 421 FTVREAVSNHASGIVVTSLVTFTLVYAVLAVIWFFLLKRYITEGPLEHDAEPAPPQTPSD 480 Query 476 DEVAPLSFAY 485 DEVAPLSFAY Sbjct 481 DEVAPLSFAY 490 >gi|41407414|ref|NP_960250.1| AppC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395766|gb|AAS03633.1| AppC [Mycobacterium avium subsp. paratuberculosis K-10] Length=490 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/490 (80%), Positives = 426/490 (87%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGI TVYHFIFVPLTIGLAPL+A+MQT WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGIVTVYHFIFVPLTIGLAPLLAIMQTAWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVAI VN SAFFIIAANSFMQHPVGAHYNP T RAEL I LL+NNTAQ Sbjct 121 PKLIHLACIWIVAIGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDDIFALLSNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHADSDTQAMYRPATILGCWVALA 235 AAF HTV+GALLTAGTFVAAVSAWW+VRS +T A+++ + M+RPA ILGC V L Sbjct 181 AAFPHTVTGALLTAGTFVAAVSAWWMVRSRAGGSTTPAAETEARTMFRPAAILGCGVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 AT L FTGD QGKLMF QQPMKMASAESLC TQTDP+FSVLT+G NNCDS+T VI+V Sbjct 241 ATVALFFTGDRQGKLMFVQQPMKMASAESLCHTQTDPDFSVLTIGTHNNCDSVTEVIKVH 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLP+LAEGR SGVTL+G+ +LQQ+YQQRFGP+DYRPNLFVTYWSFR+MIG +AIPVLFA Sbjct 301 YVLPWLAEGRFSGVTLRGVNELQQQYQQRFGPDDYRPNLFVTYWSFRLMIGFLAIPVLFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 L LW+TR G+ P QRW SW ALLT+P PFLAN AGWVFTEMGRQPWVVVPNPTGDQ VR Sbjct 361 LTVLWVTRRGRTPRQRWMSWFALLTIPTPFLANIAGWVFTEMGRQPWVVVPNPTGDQAVR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 +TV+ GVS+H +V TSL+ FTLVYAVLAV+W +LLKRY VEGPLEHDAEPA AP D Sbjct 421 MTVREGVSNHVPGMVITSLVTFTLVYAVLAVVWFFLLKRYTVEGPLEHDAEPAPPRAPSD 480 Query 476 DEVAPLSFAY 485 DEVAPLSFAY Sbjct 481 DEVAPLSFAY 490 >gi|342860806|ref|ZP_08717456.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium colombiense CECT 3035] gi|342131830|gb|EGT85087.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium colombiense CECT 3035] Length=490 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/490 (79%), Positives = 423/490 (87%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIA+MQT+WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAIMQTVWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYS+FVGD+FGAPLAMEGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSKFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVA VN SAFFIIAANSFMQHPVGAHYNP T RAEL I LL+NNTAQ Sbjct 121 PKLIHLACIWIVAFGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDDIFALLSNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHADSDTQAMYRPATILGCWVALA 235 AAF+HTV+GALL AGTFVAAVSAWW+VRS +T +D + M+RPA ILGC V L Sbjct 181 AAFSHTVTGALLVAGTFVAAVSAWWMVRSRTQASATPKGQTDARTMFRPAAILGCGVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 AT GL FTGD QGKLMF QQPMKMASAE+LC +QTDP+FSVLT+G NNC S+ VI+V Sbjct 241 ATVGLFFTGDRQGKLMFVQQPMKMASAEALCHSQTDPDFSVLTIGTHNNCGSVAEVIKVH 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLPFLAEG+ SGVTL+G+ +LQQEYQQRFGP+DYRPNLFVTYWSFR MIG +AIPVLFA Sbjct 301 YVLPFLAEGKFSGVTLRGVDELQQEYQQRFGPDDYRPNLFVTYWSFRAMIGFLAIPVLFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 L LW+TRGG+ P RW SW ALLT+P PFLAN +GWVFTEMGRQPWVV PNPTGDQL+R Sbjct 361 LTVLWVTRGGRTPKSRWMSWFALLTIPTPFLANISGWVFTEMGRQPWVVAPNPTGDQLIR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 +TV+ GVS H +V TSL+ FTLVYAVLAV+W +LLKRY VEGPLEHDAEPA AP D Sbjct 421 MTVREGVSHHVPGMVVTSLVTFTLVYAVLAVLWFFLLKRYTVEGPLEHDAEPAPPQAPSD 480 Query 476 DEVAPLSFAY 485 DEVAPLSFAY Sbjct 481 DEVAPLSFAY 490 >gi|336457902|gb|EGO36895.1| cytochrome bd-type quinol oxidase, subunit 1 [Mycobacterium avium subsp. paratuberculosis S397] Length=490 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/490 (80%), Positives = 425/490 (87%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGI TVYHFIFVPLTIGLAPL+A+MQT WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGIVTVYHFIFVPLTIGLAPLLAIMQTAWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVAI VN SAFFIIAANSFMQHPVGAHYNP T RAEL I LL+NNTAQ Sbjct 121 PKLIHLACIWIVAIGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDDIFALLSNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHADSDTQAMYRPATILGCWVALA 235 AAF+HTV+GALLTAGTFVAAVSAWW+VRS +T A+++ + M+RPA ILGC V L Sbjct 181 AAFSHTVTGALLTAGTFVAAVSAWWMVRSRAGGSTTPAAETEARTMFRPAAILGCGVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 AT L FTGD GKLMF QQPMKMASAESLC TQTDP+FSVLT+G NNC S+T VI+V Sbjct 241 ATVALFFTGDRLGKLMFVQQPMKMASAESLCHTQTDPDFSVLTIGTHNNCGSVTEVIKVH 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLP+LAEGR SGVTL+G+ +LQQ+YQQRFGP+DYRPNLFVTYWSFR+MIG +AIPVLFA Sbjct 301 YVLPWLAEGRFSGVTLRGVNELQQQYQQRFGPDDYRPNLFVTYWSFRLMIGFLAIPVLFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 L LW+TR G+ P QRW SW ALLT+P PFLAN AGWVFTEMGRQPWVVVPNPTGDQ VR Sbjct 361 LTVLWVTRRGRTPRQRWMSWFALLTIPTPFLANIAGWVFTEMGRQPWVVVPNPTGDQAVR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 +TV+ GVS+H +V TSL+ FTLVYAVLAV+W +LLKRY VEGPLEHDAEPA AP D Sbjct 421 MTVREGVSNHVPGMVITSLVTFTLVYAVLAVVWFFLLKRYTVEGPLEHDAEPAPPRAPSD 480 Query 476 DEVAPLSFAY 485 DEVAPLSFAY Sbjct 481 DEVAPLSFAY 490 >gi|118465629|ref|YP_882347.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium avium 104] gi|118166916|gb|ABK67813.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium avium 104] Length=490 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/490 (80%), Positives = 425/490 (87%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGI TVYHFIFVPLTIGLAPL+A+MQT WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGIVTVYHFIFVPLTIGLAPLLAIMQTAWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVAI VN SAFFIIAANSFMQHPVGAHYNP T RAEL I LL+NNTAQ Sbjct 121 PKLIHLACIWIVAIGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDDIFALLSNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHADSDTQAMYRPATILGCWVALA 235 AAF+HTV+GALLTAGTFVAAVSAWW+VRS +T A+++ + M+RPA ILGC V L Sbjct 181 AAFSHTVTGALLTAGTFVAAVSAWWMVRSRAGGSTTPAAETEARTMFRPAAILGCGVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 AT L FTGD QGKL+F QQPMKMASAESLC TQTDP+FSVLT+G NNC S+T VI+V Sbjct 241 ATVALFFTGDRQGKLIFVQQPMKMASAESLCHTQTDPDFSVLTIGTHNNCGSVTEVIKVH 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLP+LAEGR SGVTL+G+ +LQQ+YQQRFGP+DYRPNLFVTYWSFR+MIG +AIPVLFA Sbjct 301 YVLPWLAEGRFSGVTLRGVNELQQQYQQRFGPDDYRPNLFVTYWSFRLMIGFLAIPVLFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 L LW+TR G+ P QRW SW ALLT+P PFLAN AGWVFTEMGRQPWVVVPNPTGDQ VR Sbjct 361 LTVLWVTRRGRTPRQRWMSWFALLTIPTPFLANIAGWVFTEMGRQPWVVVPNPTGDQAVR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 +TV+ GVS+H +V TSL FTLVYAVLAV+W +LLKRY VEGPLEHDAEPA AP D Sbjct 421 MTVREGVSNHVPGMVITSLATFTLVYAVLAVVWFFLLKRYTVEGPLEHDAEPAPPRAPSD 480 Query 476 DEVAPLSFAY 485 DEVAPLSFAY Sbjct 481 DEVAPLSFAY 490 >gi|254775611|ref|ZP_05217127.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium avium subsp. avium ATCC 25291] Length=490 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/490 (79%), Positives = 424/490 (87%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGI TVYHFIFVPLTIGLAPL+A+MQT WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGIVTVYHFIFVPLTIGLAPLLAIMQTAWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVAI VN SAFFIIAANSFMQHPVGAHYNP T RAEL I LL+NNTAQ Sbjct 121 PKLIHLACIWIVAIGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDDIFALLSNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHADSDTQAMYRPATILGCWVALA 235 AAF+HTV+GALLTAGTFVAAVSAWW+VRS +T A+++ + M+RPA ILGC V L Sbjct 181 AAFSHTVTGALLTAGTFVAAVSAWWMVRSRAGGSTTPAAETEARTMFRPAAILGCGVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 AT L FTGD QGKLMF QQPMKMASAESLC TQTDP+FSVLT+G NNC S+T VI+V Sbjct 241 ATVALFFTGDRQGKLMFVQQPMKMASAESLCHTQTDPDFSVLTIGTHNNCGSVTEVIKVH 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLP+LAEGR SGVTL+G+ +LQQ+YQQRFGP+DYRPNLFVTYWSFR+MIG +AIPVLFA Sbjct 301 YVLPWLAEGRFSGVTLRGVNELQQQYQQRFGPDDYRPNLFVTYWSFRLMIGFLAIPVLFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 L LW+TR G+ P QRW S ALLT+P PFLAN AGWVFTE+GRQPWVVVPNPTGDQ VR Sbjct 361 LTVLWVTRRGRTPRQRWMSRFALLTIPTPFLANIAGWVFTEIGRQPWVVVPNPTGDQAVR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 +TV+ GVS+H +V TSL FTLVYAVLAV+W +LLKRY VEGPLEHDAEPA AP D Sbjct 421 MTVREGVSNHVPGMVITSLATFTLVYAVLAVVWFFLLKRYTVEGPLEHDAEPAPPRAPSD 480 Query 476 DEVAPLSFAY 485 DEVAPLSFAY Sbjct 481 DEVAPLSFAY 490 >gi|118468540|ref|YP_887546.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium smegmatis str. MC2 155] gi|6289094|gb|AAF06811.1|AF196488_1 CydA [Mycobacterium smegmatis str. MC2 155] gi|118169827|gb|ABK70723.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium smegmatis str. MC2 155] Length=487 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/487 (79%), Positives = 419/487 (87%), Gaps = 2/487 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFIFVPLTIGLAPLIAVMQT+WV T N WYRLT+FFGKLFLI Sbjct 1 MDALDLSRWQFGITTVYHFIFVPLTIGLAPLIAVMQTVWVATGNDTWYRLTRFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGLAAFFFESTFIGLWIFGW RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLAAFFFESTFIGLWIFGWTRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR +HLACIWIVAIAVN+SAFFII+ANSFMQHPVGA +NP TGRAEL SI L TNNTA Sbjct 121 PRWLHLACIWIVAIAVNLSAFFIISANSFMQHPVGARFNPETGRAELESIFALFTNNTAI 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADS--DTQAMYRPATILGCWVALAATA 238 AAFTH VSGA LTAG FVA V AWW+VRS T +S D MYRPATILGCWV L A Sbjct 181 AAFTHAVSGAFLTAGVFVACVCAWWMVRSHRTGGESAADAATMYRPATILGCWVTLVAAV 240 Query 239 GLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVL 298 L FTGD QGKLMF+QQPMKMASAESLC ++ DP+FSVLTVG NNCDS+ +IEVPYVL Sbjct 241 ALFFTGDAQGKLMFEQQPMKMASAESLCHSEQDPSFSVLTVGTHNNCDSVVHLIEVPYVL 300 Query 299 PFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIA 358 PFLAEG+ SGV L G+ DLQ+ Y+++FGP DYRPNLFVTYWSFR MIG +A+P LFAL A Sbjct 301 PFLAEGKFSGVHLDGVVDLQRSYEEKFGPGDYRPNLFVTYWSFRAMIGFLAVPGLFALAA 360 Query 359 LWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTV 418 LWLTRGG+IP+QRWFSW ALLT+P PFLANSAGWVFTEMGRQPWVVVPNPTGDQ +RLTV Sbjct 361 LWLTRGGRIPDQRWFSWFALLTIPTPFLANSAGWVFTEMGRQPWVVVPNPTGDQDIRLTV 420 Query 419 KAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEV 478 GVSDHS +V SL+ FTLVYAVLAVIW +LL+RYIV+GP EHD+EPAA P D+V Sbjct 421 AQGVSDHSVGLVVLSLVAFTLVYAVLAVIWFFLLRRYIVQGPSEHDSEPAAPRPPDADDV 480 Query 479 APLSFAY 485 APLSFAY Sbjct 481 APLSFAY 487 >gi|254820974|ref|ZP_05225975.1| cytochrome D ubiquinol oxidase subunit 1 [Mycobacterium intracellulare ATCC 13950] Length=490 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/490 (78%), Positives = 420/490 (86%), Gaps = 5/490 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MNVVDISRWQFGI TVYHFIFVPLTIGLAPLIA+MQT+WV T N AWYRLTKFFGKLFLI Sbjct 1 MNVVDISRWQFGIVTVYHFIFVPLTIGLAPLIAIMQTVWVATGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLAMEGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+L+HLACIWIVAI VN SAFFIIAANSFMQHPVGAHYNP T RAEL SI LL+NNTAQ Sbjct 121 PKLLHLACIWIVAIGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDSIFALLSNNTAQ 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTH-----ADSDTQAMYRPATILGCWVALA 235 AAF+HTV+GALLTAGTFVAAVS WW+VRS T A+++ + M+RPA ILGC V L Sbjct 181 AAFSHTVAGALLTAGTFVAAVSTWWMVRSRRTESTAPTAETEARTMFRPAAILGCGVVLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 A GL FTGD QGKLMF QQPMKMASAE+LC TQTDP+FSVLT+G NNC S+T VI+V Sbjct 241 AAVGLFFTGDRQGKLMFVQQPMKMASAEALCRTQTDPDFSVLTIGTHNNCGSVTEVIKVH 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 YVLPFLAEG++SGVTLQG+ +LQQ+YQ RFGP+DYRPNLFVTYWSFR+MIG + PV FA Sbjct 301 YVLPFLAEGKLSGVTLQGVNELQQQYQHRFGPDDYRPNLFVTYWSFRLMIGFLVFPVAFA 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR 415 L LWLTR G+ P RW SW ALLT+P PFLAN +GWVFTEMGRQPWVV PNPTGD LVR Sbjct 361 LAVLWLTRAGRTPKGRWVSWFALLTIPTPFLANISGWVFTEMGRQPWVVAPNPTGDPLVR 420 Query 416 LTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD 475 +TV+ GVS+H +V TSL+ FT+VYAVLAV+W +LLKRY VEGPLEHDAEPA AP Sbjct 421 MTVREGVSNHVPGMVITSLVTFTVVYAVLAVVWFFLLKRYTVEGPLEHDAEPAPPQAPDA 480 Query 476 DEVAPLSFAY 485 D+ APLSFAY Sbjct 481 DDEAPLSFAY 490 >gi|126435631|ref|YP_001071322.1| cytochrome bd ubiquinol oxidase subunit I [Mycobacterium sp. JLS] gi|126235431|gb|ABN98831.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Mycobacterium sp. JLS] Length=487 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/487 (75%), Positives = 417/487 (86%), Gaps = 2/487 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFIFVPLTIGLAP++AVMQT WV+TDNPAWYRLT+FFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVITDNPAWYRLTRFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLA EGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAIAVN SA+FIIAANSFMQHPVGA YNP +GRAEL+ LLTNNTA Sbjct 121 PRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNPESGRAELTDFGALLTNNTAV 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS--STTHADSDTQAMYRPATILGCWVALAATA 238 AF H V+GALLTAG FVA VSA+ +VR+ + T + + MYRPA I G +AL A Sbjct 181 WAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV 240 Query 239 GLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVL 298 GL TGD QGKLMF QQPMKMASAESLCDT TDP+FS+LTVG NNCDS+ V++VPYVL Sbjct 241 GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVL 300 Query 299 PFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIA 358 PFLAEG+ SGVTL+G+ DLQ +Y++RFGP DYRPNLFVTYW+FR MIGL+ +PV FAL+ Sbjct 301 PFLAEGQFSGVTLEGVNDLQAQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVT 360 Query 359 LWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTV 418 +WLTR G+IPNQRW+ W +LT+P PFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR+TV Sbjct 361 VWLTRRGRIPNQRWYGWAGVLTIPTPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRMTV 420 Query 419 KAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEV 478 + GVS+HSA +V SL+MFTLVY LAV+W L++RY+++GP EHD+EPA P D+E+ Sbjct 421 QDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL 480 Query 479 APLSFAY 485 APLSFAY Sbjct 481 APLSFAY 487 >gi|108800002|ref|YP_640199.1| cytochrome bd ubiquinol oxidase subunit I [Mycobacterium sp. MCS] gi|119869127|ref|YP_939079.1| cytochrome bd ubiquinol oxidase subunit I [Mycobacterium sp. KMS] gi|108770421|gb|ABG09143.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Mycobacterium sp. MCS] gi|119695216|gb|ABL92289.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Mycobacterium sp. KMS] Length=487 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/487 (75%), Positives = 417/487 (86%), Gaps = 2/487 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFIFVPLTIGLAP++AVMQT WVVTDNPAWYRLT+FFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVVTDNPAWYRLTRFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLA EGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLACIWIVAIAVN SA+FIIAANSFMQHPVGA YNP +GRAEL+ LLTNNTA Sbjct 121 PRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNPESGRAELTDFGALLTNNTAV 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS--STTHADSDTQAMYRPATILGCWVALAATA 238 AF H V+GALLTAG FVA VSA+ +VR+ + T + + MYRPA I G +AL A Sbjct 181 WAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV 240 Query 239 GLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVL 298 GL TGD QGKLMF QQPMKMASAESLCDT TDP+FS+LTVG NNCDS+ V++VPYVL Sbjct 241 GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVL 300 Query 299 PFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIA 358 PFLAEG+ SGVTL+G+ DLQ +Y++RFGP DYRPNLFVTYW+FR MIGL+ +PV FAL+ Sbjct 301 PFLAEGQFSGVTLEGVNDLQAQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVT 360 Query 359 LWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTV 418 +WLTR G+IP+QRW+ W +LT+P PFLANSAGWVFTEMGRQPWVVVPNPTGDQLVR+TV Sbjct 361 VWLTRRGRIPHQRWYGWAGVLTIPTPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRMTV 420 Query 419 KAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEV 478 + GVS+HSA +V SL+MFTLVY LAV+W L++RY+++GP EHD+EPA P D+E+ Sbjct 421 QDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL 480 Query 479 APLSFAY 485 APLSFAY Sbjct 481 APLSFAY 487 >gi|145224169|ref|YP_001134847.1| cytochrome bd ubiquinol oxidase subunit I [Mycobacterium gilvum PYR-GCK] gi|315444504|ref|YP_004077383.1| cytochrome bd-type quinol oxidase subunit 1 [Mycobacterium sp. Spyr1] gi|145216655|gb|ABP46059.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Mycobacterium gilvum PYR-GCK] gi|315262807|gb|ADT99548.1| cytochrome bd-type quinol oxidase, subunit 1 [Mycobacterium sp. Spyr1] Length=496 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/496 (73%), Positives = 409/496 (83%), Gaps = 11/496 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFIFVPLTIGLAPLIAVMQT+W T N AWYRLTKFFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFIFVPLTIGLAPLIAVMQTIWHFTGNTAWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYS+FVGD+FGAPLA EGL AFFFESTFIGLWIFGW+RL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSKFVGDIFGAPLAFEGLIAFFFESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR VHLACIWIVA VN SA+FIIAANSFMQHPVGA YNP +GRAEL LLTNNTA Sbjct 121 PRAVHLACIWIVAFGVNASAYFIIAANSFMQHPVGARYNPESGRAELVDFGALLTNNTAI 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTH---ADSDT--------QAMYRPATILG 229 A H ++GALLTAG FVA VSAW +VR AD D +M+RPA ILG Sbjct 181 WASLHAIAGALLTAGAFVAGVSAWLMVRERRRDRDMADPDVAPTSSLVAHSMFRPAAILG 240 Query 230 CWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLT 289 +VAL A GL FTGD QGKLMF QQPMKMASAESLC T+TDP+FS+LTVG NNCDS+T Sbjct 241 SFVALVAAGGLFFTGDIQGKLMFVQQPMKMASAESLCHTETDPDFSILTVGTHNNCDSVT 300 Query 290 RVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMA 349 +IEVPYVLPFLAE + SGVTL+G++DLQ++YQ++FGP DYRPNLFVTYWSFR MIGL+ Sbjct 301 HLIEVPYVLPFLAESKFSGVTLEGVQDLQEQYQEKFGPGDYRPNLFVTYWSFRAMIGLLL 360 Query 350 IPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT 409 +PV FAL+ LWLTR G+IP+QRW+ +LT+P PFLANSAGWVFTEMGRQPWVVVPNPT Sbjct 361 VPVAFALVTLWLTRRGRIPDQRWYGRFGILTIPTPFLANSAGWVFTEMGRQPWVVVPNPT 420 Query 410 GDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAA 469 GD LVR+TV+ GVS+H+A V SL +FTL+Y LAV W +L++RY+VEGPLEHD+EPA Sbjct 421 GDPLVRMTVQEGVSNHAAGTVWVSLTVFTLLYGALAVAWFYLMRRYVVEGPLEHDSEPAP 480 Query 470 HGAPRDDEVAPLSFAY 485 P D+VAPLSFAY Sbjct 481 PSPPDKDDVAPLSFAY 496 >gi|120403814|ref|YP_953643.1| cytochrome bd ubiquinol oxidase subunit I [Mycobacterium vanbaalenii PYR-1] gi|119956632|gb|ABM13637.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Mycobacterium vanbaalenii PYR-1] Length=486 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/486 (74%), Positives = 409/486 (85%), Gaps = 1/486 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFIFVPLTIGLAPLIA+MQT+W VT N AWYRLT+FFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFIFVPLTIGLAPLIAIMQTVWHVTGNAAWYRLTRFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGMNWSEYSRFVGD+FGAPLA EGL AFFFESTFIGLWIFGWNRL Sbjct 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAFEGLIAFFFESTFIGLWIFGWNRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR+VHLACIWIVA VN SA+FIIAANSFMQHPVGA +NP TGRAEL LLTNNTA Sbjct 121 PRVVHLACIWIVAFGVNASAYFIIAANSFMQHPVGAKFNPETGRAELVDFGALLTNNTAI 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADS-DTQAMYRPATILGCWVALAATAG 239 AF H ++ +LLTAG FVA + AW +VR+ + + + MYRPATILG VAL A AG Sbjct 181 WAFLHAITASLLTAGAFVAGICAWLMVRAHRRGGEEVEARTMYRPATILGSAVALVAAAG 240 Query 240 LLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLP 299 L FTGD QGKLMF QQPMKMASAESLC+T+TDPNFS+LTVG NNCD + RV+EVPYVLP Sbjct 241 LFFTGDIQGKLMFVQQPMKMASAESLCNTETDPNFSILTVGTHNNCDGIVRVLEVPYVLP 300 Query 300 FLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIAL 359 FLAE + SGVTL+G+ DLQQ +Q+FGP +YRPNLFVTYW+FR MIGL+ +PV FAL++L Sbjct 301 FLAESKFSGVTLEGVEDLQQAAEQKFGPGNYRPNLFVTYWAFRAMIGLLLVPVAFALLSL 360 Query 360 WLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVK 419 WLTR G+IP QRW+ LLT+P PFLA+SAGWVFTEMGRQPWVVVPNPTGDQ+VR+TV+ Sbjct 361 WLTRRGRIPGQRWYGTFGLLTIPTPFLASSAGWVFTEMGRQPWVVVPNPTGDQMVRMTVQ 420 Query 420 AGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVA 479 GVS+H+A V SL +FTL+Y LAV+W +LL+RY+VEGP EHD+EPA P D+VA Sbjct 421 EGVSNHAAGTVMFSLAVFTLLYGALAVVWFYLLRRYVVEGPQEHDSEPAPPTPPSKDDVA 480 Query 480 PLSFAY 485 PLSFAY Sbjct 481 PLSFAY 486 >gi|169629715|ref|YP_001703364.1| integral membrane cytochrome D ubiquinol oxidase (subunit I) CydA [Mycobacterium abscessus ATCC 19977] gi|169241682|emb|CAM62710.1| Probable integral membrane cytochrome D ubiquinol oxidase (Subunit I) CydA [Mycobacterium abscessus] Length=484 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/485 (73%), Positives = 395/485 (82%), Gaps = 1/485 (0%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 MN +D+SRWQFGITTVYHFI VPLTIGLAPLIA+MQT WVVT N +WYRLTKFFGKLFLI Sbjct 1 MNALDVSRWQFGITTVYHFILVPLTIGLAPLIAIMQTAWVVTGNNSWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWTRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLACIW+VAI VN SAFFIIAANSFMQHPVGA YNP TGRAEL+SI LLTNNTA Sbjct 121 PKLVHLACIWMVAIGVNASAFFIIAANSFMQHPVGAVYNPETGRAELTSITELLTNNTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HTV+G+LLTAGTF+A + WW+VRS D + MYRPA I C V + + L Sbjct 181 AAFPHTVAGSLLTAGTFIAGICGWWMVRSHKVGTLDDARTMYRPAAIGACAVMILSGVAL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 TGD QGKLMFQQQPMKMASAESLC T+ DP FSVLTVG NNC S+T I +PYVLPF Sbjct 241 AATGDVQGKLMFQQQPMKMASAESLCYTEKDPKFSVLTVGTHNNCASVTHAISLPYVLPF 300 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LAEG+ + VTL+G+ DLQ+EY+Q+FGP +YRPNLFVTYWSFR MIGL A L AL LW Sbjct 301 LAEGKFTDVTLKGVEDLQKEYEQKFGPRNYRPNLFVTYWSFRAMIGLAAGSALLALAGLW 360 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 +TR G+IP QRWF+WL++L +P PFLANSAGWVFTEMGRQPWVV PNPTG +RLTV Sbjct 361 VTRRGRIPGQRWFAWLSILAIPTPFLANSAGWVFTEMGRQPWVVAPNPTGVDQIRLTVDM 420 Query 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP 480 VS HSA V SL+ FTL+Y L V+W WL++RY +EGPLEHDAEP+ A DD V P Sbjct 421 AVSHHSAATVWLSLITFTLLYGALGVVWFWLIRRYTIEGPLEHDAEPSPP-ASDDDSVKP 479 Query 481 LSFAY 485 LSFAY Sbjct 480 LSFAY 484 >gi|54022552|ref|YP_116794.1| putative cytochrome D ubiquinol oxidase subunit I [Nocardia farcinica IFM 10152] gi|54014060|dbj|BAD55430.1| putative cytochrome D ubiquinol oxidase subunit I [Nocardia farcinica IFM 10152] Length=499 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/505 (68%), Positives = 401/505 (80%), Gaps = 26/505 (5%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+V+DISRWQFGITTVYHF+FVPLTIGLAP +A MQT WV+T N WYRLTKFFGKLFLI Sbjct 1 MSVLDISRWQFGITTVYHFLFVPLTIGLAPFVAGMQTAWVITGNERWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+E L AFF ESTFIGLWIFGW+RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEALVAFFLESTFIGLWIFGWSRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLA IW+VAI VN SA+FI+AANSFMQHPVGA YNP GRAEL+SI +LTNNT Sbjct 121 PKLVHLATIWLVAIGVNASAYFIVAANSFMQHPVGARYNPERGRAELTSIWEVLTNNTTL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHAD----SDTQAMYRPATILGCWVALAA 236 AAF H ++G+ L AGTFVA ++ WW+VR++ + AD + + M+RPA G +V L + Sbjct 181 AAFPHVIAGSFLVAGTFVAGIAGWWMVRNARS-ADPVRREEARTMWRPAGRAGMYVILVS 239 Query 237 TAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPY 296 ++ TGD QGKLMF+QQPMKMASAESLC TQTDP+FSVLTVG NNCDS+T +IEVPY Sbjct 240 MVAVVLTGDIQGKLMFEQQPMKMASAESLCHTQTDPDFSVLTVGTHNNCDSVTHLIEVPY 299 Query 297 VLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFAL 356 VLP+LAEG+ GVTL G++DLQQ Y ++FGP DYRPNLFVTYWSFR MIGL A VL L Sbjct 300 VLPYLAEGKFEGVTLDGVKDLQQAYIEKFGPGDYRPNLFVTYWSFRAMIGLSAGSVLLVL 359 Query 357 IALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRL 416 LWLTR G++P+QRW+SWL+LL +P PFLANSAGWVFTEMGRQPWVVVPNPTGD +R+ Sbjct 360 AGLWLTRRGRVPDQRWYSWLSLLAIPTPFLANSAGWVFTEMGRQPWVVVPNPTGDPALRM 419 Query 417 TVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAA------- 469 TV+ GVSDHS + V SL++FTL+Y LAV+W +L++RY++EGP EPAA Sbjct 420 TVQQGVSDHSFSTVLISLVVFTLLYGALAVVWFYLIRRYVIEGP-----EPAAPPKPDRP 474 Query 470 ---------HGAPRDDEVAPLSFAY 485 GA + V LSFAY Sbjct 475 DDSGGTGRTSGAAEEPAVEQLSFAY 499 >gi|229488515|ref|ZP_04382381.1| cytochrome D ubiquinol oxidase subunit 1 [Rhodococcus erythropolis SK121] gi|229324019|gb|EEN89774.1| cytochrome D ubiquinol oxidase subunit 1 [Rhodococcus erythropolis SK121] Length=499 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/499 (68%), Positives = 393/499 (79%), Gaps = 14/499 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFI VPLTIGLAP+IA+MQT+WVVT WYRLTKFFGKLFLI Sbjct 1 MDTLDVSRWQFGITTVYHFILVPLTIGLAPMIAIMQTMWVVTKKDHWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ES FIGLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFMESVFIGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLACIW+VAI VN SAFFIIAANSFMQHPVGA YNP TGRAEL+SI LLTNNTA Sbjct 121 PKLVHLACIWLVAIGVNASAFFIIAANSFMQHPVGATYNPETGRAELTSIWELLTNNTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS----------STTHADSDTQAMYRPATILGC 230 AAF H V+GA LTA TFVA +S WW+VR+ +SD + MYRPAT Sbjct 181 AAFPHAVAGAFLTAATFVAGISGWWMVRNMRRAKQAEAAEAERLESDARTMYRPATRFAL 240 Query 231 WVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTR 290 V + A G+++TGD QGKLMFQQQPMKMASAESLCDT+ DP+FS+LT+G NNCDS+T Sbjct 241 LVMIVAGIGIIYTGDVQGKLMFQQQPMKMASAESLCDTEMDPDFSILTIGTHNNCDSVTH 300 Query 291 VIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAI 350 V++VP+VLP+LAEG+ +GV LQG+ LQ++ +Q FGP +YRPNLFVTYWSFR MIGL A Sbjct 301 VLKVPFVLPWLAEGKFTGVELQGVNQLQEQAEQDFGPGNYRPNLFVTYWSFRAMIGLAAG 360 Query 351 PVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG 410 AL LW+TR G++P+Q+WF L+L+ +P PF+ANSAGW+FTEMGRQPWVV PNPTG Sbjct 361 SAALALAGLWVTRKGRVPDQKWFGILSLVAIPTPFMANSAGWIFTEMGRQPWVVHPNPTG 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEP--- 467 ++RLTV GVSDH++ V SL+ FTL+Y L V+W L+ RY EGPLEHD P Sbjct 421 VDMIRLTVDQGVSDHASATVWASLITFTLLYGALGVVWFKLIVRYAKEGPLEHDMHPPGD 480 Query 468 AAHGAPRD-DEVAPLSFAY 485 A H P D D+ LSFAY Sbjct 481 ADHDEPEDPDKPKQLSFAY 499 >gi|226308305|ref|YP_002768265.1| cytochrome bd-type menaquinol oxidase subunit I [Rhodococcus erythropolis PR4] gi|226187422|dbj|BAH35526.1| cytochrome bd-type menaquinol oxidase subunit I [Rhodococcus erythropolis PR4] Length=499 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/499 (68%), Positives = 390/499 (79%), Gaps = 14/499 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFI VPLTIGLAP+IA+MQT+WVVT WYRLTKFFGKLFLI Sbjct 1 MDTLDVSRWQFGITTVYHFILVPLTIGLAPMIAIMQTMWVVTKKDHWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ES FIGLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFMESVFIGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLACIW+VAI VN SAFFIIAANSFMQHPVGA YNP TGRAEL+SI LLTNNTA Sbjct 121 PKLVHLACIWLVAIGVNASAFFIIAANSFMQHPVGATYNPETGRAELTSIWELLTNNTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS----------STTHADSDTQAMYRPATILGC 230 AAF H V+GA LTA TFVA +S WW+VR+ +SD + MYRPAT Sbjct 181 AAFPHAVAGAFLTAATFVAGISGWWMVRNMRRAKQAEAAEAERLESDARTMYRPATRFAL 240 Query 231 WVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTR 290 V + A G+++TGD QGKLMFQQQPMKMASAESLC+T+ DP+FS+LT+G NNCDS+T Sbjct 241 LVMIVAGIGIIYTGDVQGKLMFQQQPMKMASAESLCETEMDPDFSLLTIGTHNNCDSVTH 300 Query 291 VIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAI 350 VI+VPY L +LAEG+ +GV LQG+ LQ++ +Q FGP +YRPNLFVTYWSFR MIGL A Sbjct 301 VIKVPYALSWLAEGKFTGVELQGVNQLQEQAEQDFGPGNYRPNLFVTYWSFRAMIGLAAG 360 Query 351 PVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG 410 AL LW+TR G++P+Q+WF L+L+ +P PF+ANSAGW+FTEMGRQPWVV PNPTG Sbjct 361 SAALALAGLWVTRKGRVPDQKWFGILSLVAIPTPFMANSAGWIFTEMGRQPWVVHPNPTG 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAA- 469 ++RLTV GVSDH++ V SL+ FTL+Y L V+W L+ RY EGPLEHD P Sbjct 421 VDMIRLTVDQGVSDHASATVWASLITFTLLYGALGVVWFKLIVRYAKEGPLEHDMHPPGD 480 Query 470 --HGAPRD-DEVAPLSFAY 485 H P D D+ LSFAY Sbjct 481 TDHDEPEDPDKPKQLSFAY 499 >gi|312138310|ref|YP_004005646.1| cytochrome d ubiquinol oxidase subunit i cyda [Rhodococcus equi 103S] gi|311887649|emb|CBH46961.1| cytochrome d ubiquinol oxidase subunit I CydA [Rhodococcus equi 103S] Length=505 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/481 (68%), Positives = 387/481 (81%), Gaps = 10/481 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+V+D+SRWQFGITTVYHFIFVPLTIGLAPL+A+MQT+WV+T WYRLTKFFGK FLI Sbjct 1 MDVLDVSRWQFGITTVYHFIFVPLTIGLAPLVAIMQTMWVITKKDHWYRLTKFFGKFFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLA IW+ AI VN SAFFII ANSFMQHPVGA +NP TGRAEL SI LL NNTA Sbjct 121 PKLVHLATIWLAAIGVNASAFFIIVANSFMQHPVGARFNPDTGRAELESIWTLLGNNTAW 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS---STTHA-------DSDTQAMYRPATILGC 230 AAF H V+GA LTA TFV ++ WW+VR+ + T A ++D + M+RPA +G Sbjct 181 AAFPHAVAGAFLTASTFVVGIAGWWMVRNMRKAKTAAPEEREVLENDARGMFRPAARMGM 240 Query 231 WVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTR 290 V + A +++TGD QGKLMFQQQPMKMASAESLC T+TDP+FS+LTVG NNCDS+T Sbjct 241 LVMIIAGIAVIYTGDVQGKLMFQQQPMKMASAESLCHTETDPDFSILTVGTHNNCDSVTH 300 Query 291 VIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAI 350 V++VPYVLP+LAEG+ISGVTLQG+ DLQ +Y+++FGP +YRPNLFVTYWSFR MIGL A Sbjct 301 VLKVPYVLPWLAEGKISGVTLQGVEDLQAQYEEQFGPGNYRPNLFVTYWSFRAMIGLAAG 360 Query 351 PVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG 410 AL LW+TR G++P+Q WF WL+L+ +P PFLANSAGW+FTEMGRQPWVV PNPTG Sbjct 361 SAALALAGLWVTRKGRVPDQNWFKWLSLIAIPTPFLANSAGWIFTEMGRQPWVVHPNPTG 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAH 470 L+RLTV GVSDH +V TSL++FT++Y L V+W +L++RY + GP HD P Sbjct 421 VDLIRLTVDQGVSDHPTALVVTSLVVFTVLYGALGVVWFYLIRRYAIAGPSPHDMHPPGE 480 Query 471 G 471 G Sbjct 481 G 481 >gi|325674772|ref|ZP_08154459.1| cytochrome D ubiquinol oxidase subunit I [Rhodococcus equi ATCC 33707] gi|325554358|gb|EGD24033.1| cytochrome D ubiquinol oxidase subunit I [Rhodococcus equi ATCC 33707] Length=505 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/481 (68%), Positives = 386/481 (81%), Gaps = 10/481 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+V+D+SRWQFGITTVYHFIFVPLTIGLAPL+A+MQT+WV+T WYRLTKFFGK FLI Sbjct 1 MDVLDVSRWQFGITTVYHFIFVPLTIGLAPLVAIMQTMWVITKKDHWYRLTKFFGKFFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLA IW+ AI VN SAFFII ANSFMQHPVGA +NP TGRAEL SI LL NNTA Sbjct 121 PKLVHLATIWLAAIGVNASAFFIIVANSFMQHPVGARFNPDTGRAELESIWTLLGNNTAW 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS---STTHA-------DSDTQAMYRPATILGC 230 AAF H V+GA LTA TFV ++ WW+VR+ + T A ++D + M+RPA +G Sbjct 181 AAFPHAVAGAFLTASTFVVGIAGWWMVRNMRKAKTAAPEEREVLENDARGMFRPAARMGM 240 Query 231 WVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTR 290 V + A +++TGD QGKLMFQQQPMKMASAESLC T+TDP+FS+LTVG NNCDS+T Sbjct 241 LVMIIAGIAVIYTGDVQGKLMFQQQPMKMASAESLCHTETDPDFSILTVGTHNNCDSVTH 300 Query 291 VIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAI 350 V++VPYVLP+LAEG+ISGVTLQG+ DLQ +Y+ +FGP +YRPNLFVTYWSFR MIGL A Sbjct 301 VLKVPYVLPWLAEGKISGVTLQGVEDLQAQYEDQFGPGNYRPNLFVTYWSFRAMIGLAAG 360 Query 351 PVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG 410 AL LW+TR G++P+Q WF WL+L+ +P PFLANSAGW+FTEMGRQPWVV PNPTG Sbjct 361 SAALALAGLWVTRKGRVPDQNWFKWLSLIAIPTPFLANSAGWIFTEMGRQPWVVHPNPTG 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAH 470 L+RLTV GVSDH +V TSL++FT++Y L V+W +L++RY + GP HD P Sbjct 421 VDLIRLTVDQGVSDHPTALVVTSLVVFTVLYGALGVVWFYLIRRYAIAGPSPHDMHPPGE 480 Query 471 G 471 G Sbjct 481 G 481 >gi|111021818|ref|YP_704790.1| cytochrome bd ubiquinol oxidase subunit I [Rhodococcus jostii RHA1] gi|110821348|gb|ABG96632.1| cytochrome bd ubiquinol oxidase subunit I [Rhodococcus jostii RHA1] Length=498 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/504 (66%), Positives = 388/504 (77%), Gaps = 25/504 (4%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFI VPLTIGLAPLIAVMQT+WVVT WYRLTKFFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFILVPLTIGLAPLIAVMQTMWVVTGKDHWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLA IW+VAI VN SA+FII ANSFMQHPVGA YNP TGRAEL+SI LLTNNTA Sbjct 121 PKLVHLATIWLVAIGVNASAYFIITANSFMQHPVGAVYNPETGRAELTSIWELLTNNTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS-----STTHAD------SDTQAMYRPATILG 229 AAF H VSGA LTAGTFVA V WW+VRS T D + M+RP TIL Sbjct 181 AAFPHVVSGAFLTAGTFVAGVGGWWMVRSMRKSKEATEPDVAKKHEETARTMFRPVTILA 240 Query 230 CWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLT 289 WV +AA GL TGD QGKLMF+QQPMKMASAESLC T+T +FS+LTVG QNNC+S+T Sbjct 241 LWVMVAAGIGLAITGDIQGKLMFEQQPMKMASAESLCHTETGADFSILTVGTQNNCESIT 300 Query 290 RVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMA 349 ++I++P + FLA+G T++G+ ++Q Y++ +GP +Y+PNLFVTYW+FR MIG A Sbjct 301 QLIKIPGLTSFLADGTFDS-TVEGVTEIQARYEETYGPGNYKPNLFVTYWTFRAMIGWAA 359 Query 350 IPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT 409 L A++ LW+TRGG++P+++WF WL++ +P PFL NSAGWVFTEMGRQPWVV PNPT Sbjct 360 GSALLAVVGLWMTRGGRVPDKKWFGWLSIAVIPTPFLGNSAGWVFTEMGRQPWVVAPNPT 419 Query 410 GDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAA 469 G ++RLTV GVS+HS V SL+ FT+VY LAV+W L++RY +EGPLEHDA P Sbjct 420 GVDMIRLTVDQGVSNHSPWTVWVSLITFTVVYGALAVVWFTLIRRYTIEGPLEHDAHP-- 477 Query 470 HGAPRDDEVAP--------LSFAY 485 P DD P LSFAY Sbjct 478 ---PGDDHDEPEEPGKPEQLSFAY 498 >gi|226364340|ref|YP_002782122.1| cytochrome bd-type menaquinol oxidase subunit I [Rhodococcus opacus B4] gi|226242829|dbj|BAH53177.1| cytochrome bd-type menaquinol oxidase subunit I [Rhodococcus opacus B4] Length=498 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/505 (65%), Positives = 390/505 (78%), Gaps = 27/505 (5%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFI VPLTIGLAPLIAVMQT+WVVT WYRLTKFFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFILVPLTIGLAPLIAVMQTMWVVTGKDHWYRLTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHLA IW+VAI VN SA+FII ANSFMQHPVGA YNP TGRAEL+SI LLTNNTA Sbjct 121 PKLVHLATIWLVAIGVNASAYFIITANSFMQHPVGAVYNPETGRAELTSIWTLLTNNTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS------------STTHADSDTQAMYRPATIL 228 AAF H V+GA LTAGTFVA V WW+VRS + H ++ + M+RP TIL Sbjct 181 AAFPHVVAGAFLTAGTFVAGVGGWWMVRSMRKAKEATEPEVAKKHEET-ARTMFRPVTIL 239 Query 229 GCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSL 288 WV +A+ GL TGD QGKLMF+QQPMKMASAESLC T+T +FS+LTVG QNNC+S+ Sbjct 240 ALWVMVASGIGLAITGDIQGKLMFEQQPMKMASAESLCHTETGADFSILTVGTQNNCESI 299 Query 289 TRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLM 348 T++I++P + FLA+G T++G+ ++Q Y++ +GP +Y+PNLFVTYW+FR MIG Sbjct 300 TQLIKIPGLTSFLADGTFDS-TVEGVTEIQARYEEMYGPGNYKPNLFVTYWTFRAMIGWA 358 Query 349 AIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNP 408 A L A++ LW+TRGG++P+++WF WL++ +P PFL NSAGWVFTEMGRQPWVV PNP Sbjct 359 AGSALLAVVGLWMTRGGRVPDKKWFGWLSIAVIPTPFLGNSAGWVFTEMGRQPWVVAPNP 418 Query 409 TGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPA 468 TG ++RLTV GVS+HS V SL+ FT+VY LAV+W L++RY VEGPLEHDA P Sbjct 419 TGVDMIRLTVDQGVSNHSPWTVWVSLITFTVVYGALAVVWFTLIRRYTVEGPLEHDAHP- 477 Query 469 AHGAPRDDEVAP--------LSFAY 485 P DD P LSFAY Sbjct 478 ----PGDDHDEPEEPGKPEQLSFAY 498 >gi|317506788|ref|ZP_07964565.1| cytochrome Ubiquinol Oxidase [Segniliparus rugosus ATCC BAA-974] gi|316254920|gb|EFV14213.1| cytochrome Ubiquinol Oxidase [Segniliparus rugosus ATCC BAA-974] Length=482 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/487 (67%), Positives = 377/487 (78%), Gaps = 7/487 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M +DI+RWQFGITTVYHF+ VPLTIGLAPLIA+MQT+W VT + WYR+TKFFGKLFLI Sbjct 1 MTALDIARWQFGITTVYHFLLVPLTIGLAPLIALMQTVWHVTGDERWYRMTKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFG+NWSEYSRF+GDVFGAPLA+EG+ AFF ESTF+GLWIFGW+RL Sbjct 61 NFALGVATGIVQEFQFGLNWSEYSRFIGDVFGAPLALEGIVAFFMESTFLGLWIFGWDRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR HLACIW+VAI N SA+FIIAANSFMQHPVG YNP RAEL+SI LLTNNT Sbjct 121 PRRAHLACIWMVAIGTNASAYFIIAANSFMQHPVGVRYNPEKRRAELTSIWELLTNNTTL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HT++GA LTAGTFVA + +WWLV+ +D M+RP L WV +AA + Sbjct 181 AAFPHTIAGAFLTAGTFVAGIGSWWLVKEK-----ADVSEMFRPVVRLALWVMVAAGGAV 235 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 TGD QGKLMFQQQPMKMASAESLC T+TDP+FS+LT G NNC S++R+IEVPYVLPF Sbjct 236 AITGDVQGKLMFQQQPMKMASAESLCQTETDPDFSILTTGTHNNCASISRIIEVPYVLPF 295 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LA+ + +GVTL+G+ DLQ+ +++GP +YRPNLFV YW+FR MIG A LW Sbjct 296 LAKDQFTGVTLEGVEDLQRAGVEKYGPGNYRPNLFVAYWAFRAMIGWALGSAALAAAGLW 355 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA 420 LTRGG+ P Q WF LAL +P PFLANSAGWVFTEMGRQPW V PNPTG + + LTV+ Sbjct 356 LTRGGRTPRQGWFRRLALWALPTPFLANSAGWVFTEMGRQPWAVAPNPTGVKEIHLTVQQ 415 Query 421 GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEP--AAHGAPRDDEV 478 VS H+ VA SL+ FTL+Y LA +W L++RY+VEGPLEHDA P A A DDE Sbjct 416 AVSGHAVGAVAASLIGFTLLYGFLAAVWFGLMRRYVVEGPLEHDAHPPGARAEADEDDEA 475 Query 479 APLSFAY 485 PLSFAY Sbjct 476 KPLSFAY 482 >gi|296393661|ref|YP_003658545.1| cytochrome bd ubiquinol oxidase subunit I [Segniliparus rotundus DSM 44985] gi|296180808|gb|ADG97714.1| cytochrome bd ubiquinol oxidase subunit I [Segniliparus rotundus DSM 44985] Length=483 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/488 (66%), Positives = 379/488 (78%), Gaps = 8/488 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M +D++RWQFGITTVYHF+ VPLTIGLAPLIA+MQT+W +T + WYR TKFFGKLFLI Sbjct 1 MTALDVARWQFGITTVYHFLLVPLTIGLAPLIALMQTIWNITADERWYRATKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFG+NWSEYSRFVGDVFGAPLA+EG+ AFF ESTF+GLWIFGW+RL Sbjct 61 NFALGVATGIVQEFQFGLNWSEYSRFVGDVFGAPLALEGIVAFFMESTFLGLWIFGWDRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR HLAC W+VA+ N SA+FIIAANSFMQHPVG YNP RAEL+SI LLTNNT Sbjct 121 PRGAHLACAWMVALGTNASAYFIIAANSFMQHPVGVRYNPQKRRAELTSIWELLTNNTTL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HTV+G+ LTAGTFVA + +WWLVR + + RPA LG W +AA A L Sbjct 181 AAFPHTVAGSFLTAGTFVAGIGSWWLVREKSGRGQ-----LLRPAVKLGLWTMVAAGAVL 235 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 TGD QGKLMFQQQPMKMASAESLC T+TDP+FSVLT G NNC S++RVIEVPY LP+ Sbjct 236 AVTGDVQGKLMFQQQPMKMASAESLCRTETDPDFSVLTTGTHNNCASISRVIEVPYALPY 295 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LA+G+ SGVTL G+ +LQQ+ +++GP +YRPNLFV YW+FR MIG AL+ LW Sbjct 296 LAKGKFSGVTLAGVENLQQDDVEKYGPGNYRPNLFVAYWAFRAMIGWALGSAALALVGLW 355 Query 361 LTRGGQI-PNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVK 419 TRGG+ PN+ WF LAL ++P PFLANSAGWVFTEMGRQPWVV PNPTG + + LTV+ Sbjct 356 ATRGGRTPPNKTWFRRLALWSLPTPFLANSAGWVFTEMGRQPWVVAPNPTGVREIHLTVQ 415 Query 420 AGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVA 479 VS HSA VA SL+ FTL+Y LA++W L++RY +EGP EHDA P A D++ A Sbjct 416 QAVSGHSAAAVAGSLVFFTLLYGFLAIVWFGLMRRYALEGPSEHDAHPPGDRAQADEDHA 475 Query 480 --PLSFAY 485 PLSFAY Sbjct 476 PKPLSFAY 483 >gi|38234468|ref|NP_940235.1| putative cytochrome ubiquinol oxidase subunit [Corynebacterium diphtheriae NCTC 13129] gi|38200731|emb|CAE50433.1| Putative cytochrome ubiquinol oxidase subunit [Corynebacterium diphtheriae] Length=503 Score = 620 bits (1599), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 300/484 (62%), Positives = 363/484 (75%), Gaps = 8/484 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M++VD+SRWQFGITTVYHF+FVPLTIGLAP++A MQT W +T W R TKFFG LFL+ Sbjct 1 MDLVDVSRWQFGITTVYHFLFVPLTIGLAPIVAAMQTAWFITKKDMWLRSTKFFGTLFLV 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFAMGVVTGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLIAFFIESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+ VHLA IW+VAIAVNVSA+FII ANSFMQHPVGA +NP TGRAEL S+ LL N TA Sbjct 121 PKAVHLASIWLVAIAVNVSAYFIIVANSFMQHPVGARFNPETGRAELVSLGKLLANPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AA+ H V+G+LLT GTFVA ++ WW++R D A +R LG W LA+ AGL Sbjct 181 AAWPHAVTGSLLTGGTFVAGIAGWWMIRERLAQRTEDA-AFWRKNFRLGAWTTLASVAGL 239 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 TGD QGKLMF QQPMKMA+AESLC+T+ DP+FSVL+VG NNC+S+ +I+VP VL Sbjct 240 SLTGDIQGKLMFVQQPMKMAAAESLCETELDPSFSVLSVGTHNNCESVKHLIDVPGVLSI 299 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 L++ ++SGVTL+G+ LQ++Y+ +GP +Y PNLFVTYWSFR MIGLMA V+ A++ LW Sbjct 300 LSQNKLSGVTLEGVNQLQEKYEALYGPGNYVPNLFVTYWSFRAMIGLMAASVVLAIVGLW 359 Query 361 LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT-------GDQL 413 +TR G+IP RW AL+ +P PFLANSAGW+FTEMGRQPW+V PNP G+ L Sbjct 360 MTRKGRIPQLRWLGTAALIAVPFPFLANSAGWIFTEMGRQPWIVAPNPEATPGSPDGEDL 419 Query 414 VRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAP 473 + L V GVS H VV TSL+ FTLVY LA +W WL+K+ +V G E + +G Sbjct 420 IHLIVDFGVSSHPTWVVWTSLIGFTLVYGSLACVWFWLMKKKVVAGASEDSSSMLGYGPH 479 Query 474 RDDE 477 D Sbjct 480 SSDH 483 >gi|25027809|ref|NP_737863.1| putative cytochrome D ubiquinol oxidase subunit I [Corynebacterium efficiens YS-314] gi|259506199|ref|ZP_05749101.1| cytochrome D ubiquinol oxidase, subunit I [Corynebacterium efficiens YS-314] gi|23493092|dbj|BAC18063.1| putative cytochrome D ubiquinol oxidase subunit I [Corynebacterium efficiens YS-314] gi|259166176|gb|EEW50730.1| cytochrome D ubiquinol oxidase, subunit I [Corynebacterium efficiens YS-314] Length=505 Score = 616 bits (1588), Expect = 3e-174, Method: Compositional matrix adjust. Identities = 304/488 (63%), Positives = 372/488 (77%), Gaps = 14/488 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+V+DI+RWQFGITTVYHFIFVPLTIGLAPL+A+MQT W VT WYR T+FFG + LI Sbjct 1 MDVIDIARWQFGITTVYHFIFVPLTIGLAPLVALMQTFWQVTGKEHWYRATRFFGTILLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIG+ATGIVQEFQFGMNWSEYSRFVGDVFG PLA+EGL AFF ES F+GLWIFGW ++ Sbjct 61 NFAIGIATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P +H A IWIVAIA N+SA+FII ANSFMQHPVGA YNP TGRAEL+ IV LLTN TA Sbjct 121 PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAVYNPETGRAELTDIVALLTNPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF H V+G+LLTAGTFV + WWL+R+S ++ M+RPA +G W + A + Sbjct 181 AAFPHAVAGSLLTAGTFVVGICGWWLIRAS----KQESHRMFRPALWMGWWTTVIALIAV 236 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF 300 TGD Q KLMFQQQPMKMASAESLC T+TDPNFS+LT+G N+CDS+ +IE+P+VLPF Sbjct 237 AVTGDIQAKLMFQQQPMKMASAESLCHTETDPNFSILTIGTHNDCDSVIHLIEMPWVLPF 296 Query 301 LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW 360 LAEGR +GVTL+G++DLQ + + +GP +Y PNLFVTYWSFR MIGLM + A I+ Sbjct 297 LAEGRFTGVTLEGVQDLQAKAESLYGPGNYAPNLFVTYWSFRAMIGLMVGSLAIAFISWL 356 Query 361 LTRGGQIPN---QRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNP--TGD---Q 412 L R G+ P RWF+W +L +P PFLANSAGW+FTEMGRQPWVV PNP GD + Sbjct 357 LLRKGRTPTGRIARWFAWGSLAVIPMPFLANSAGWIFTEMGRQPWVVHPNPESVGDPRTE 416 Query 413 LVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGA 472 ++R+TV GVSDH+ VV +L+ FTL+Y +L VIW WL++R ++ GP H++ P A Sbjct 417 MIRMTVDMGVSDHAPWVVWVTLIGFTLLYFILFVIWFWLIRRAVLIGP-PHESGPVGD-A 474 Query 473 PRDDEVAP 480 + ++ P Sbjct 475 SQSNQPGP 482 >gi|333918383|ref|YP_004491964.1| cytochrome bd-type menaquinol oxidase subunit I [Amycolicicoccus subflavus DQS3-9A1] gi|333480604|gb|AEF39164.1| Cytochrome bd-type menaquinol oxidase subunit I [Amycolicicoccus subflavus DQS3-9A1] Length=499 Score = 615 bits (1586), Expect = 5e-174, Method: Compositional matrix adjust. Identities = 305/497 (62%), Positives = 368/497 (75%), Gaps = 13/497 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 + +D++RWQFGITTVYHFIFVPLTIGLAPL+AVMQT+W+VT WYRLTKFFGKLFLI Sbjct 4 LEALDVARWQFGITTVYHFIFVPLTIGLAPLVAVMQTMWMVTGKDHWYRLTKFFGKLFLI 63 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+G+ TGIVQEFQFGMNWSEYSRF+GDVFGAPLA+EGLAAFF ESTF+GLWIFGW RL Sbjct 64 NFALGIVTGIVQEFQFGMNWSEYSRFIGDVFGAPLALEGLAAFFIESTFLGLWIFGWGRL 123 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PRLVHLA IW+VAI VN SA+FII ANSFMQHPVGA +N TGRAEL+SI LLTN TA Sbjct 124 PRLVHLATIWMVAIGVNASAYFIIVANSFMQHPVGAVFNEETGRAELTSIWELLTNPTAL 183 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS----------STTHADSDTQAMYRPATILGC 230 AAF HT++G+ LTA TFVA V WW+VR + + + M+RP T L Sbjct 184 AAFPHTIAGSFLTAATFVAGVGGWWMVRRMRQAKTAAPEEAAEYEEEARTMWRPVTRLAL 243 Query 231 WVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNN-CDSLT 289 V +A+ L TGD Q KLMF+QQPMKMASAE+LC T+ FS+LT+G NN C+++ Sbjct 244 GVMIASGFALAVTGDIQAKLMFEQQPMKMASAEALCHTERGAEFSLLTIGDHNNDCENVR 303 Query 290 RVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMA 349 ++ VP + FLA + L G+ +LQ+ Y +R+G +Y+PNLF+TYWSFR+MIGL Sbjct 304 HILAVPGLTSFLATNDFNA-ELMGVVELQEMYSERYGEANYQPNLFITYWSFRLMIGLAF 362 Query 350 IPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT 409 AL LW+TR G++P+Q WF LA+ +P PFLANS GW+FTEMGRQPWVVVPN T Sbjct 363 GSAALALAGLWVTRRGRVPDQEWFGKLAIFAIPTPFLANSFGWIFTEMGRQPWVVVPNLT 422 Query 410 GDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAA 469 G VRL VS+HSA +V SL+ FTLVY LAV+W +LL+RY++EGPLEHD P Sbjct 423 GVDQVRLMTADAVSNHSAGLVLASLITFTLVYGALAVVWFYLLRRYVLEGPLEHDKHPHK 482 Query 470 HGAPRD-DEVAPLSFAY 485 H D+V PLSFAY Sbjct 483 HDDDESGDDVKPLSFAY 499 >gi|302206814|gb|ADL11156.1| Cytochrome d ubiquinol oxidase subunit 1 [Corynebacterium pseudotuberculosis C231] gi|302331376|gb|ADL21570.1| Cytochrome d ubiquinol oxidase subunit 1 [Corynebacterium pseudotuberculosis 1002] gi|308277066|gb|ADO26965.1| Cytochrome d ubiquinol oxidase subunit 1 [Corynebacterium pseudotuberculosis I19] gi|341825508|gb|AEK93029.1| Cytochrome d ubiquinol oxidase subunit 1 [Corynebacterium pseudotuberculosis PAT10] Length=507 Score = 610 bits (1573), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 301/495 (61%), Positives = 365/495 (74%), Gaps = 11/495 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M++VDISRWQFGITTVYHFIFVPLTIGLAP++A QT WV+T+ W R TKFFG LFL+ Sbjct 1 MDLVDISRWQFGITTVYHFIFVPLTIGLAPIVAGFQTAWVLTNKDKWLRATKFFGTLFLV 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGM WSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFAMGVVTGIVQEFQFGMAWSEYSRFVGDVFGAPLALEGLVAFFVESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR +HLA IW+VA+AVNVSA+FII ANSFMQHPVGA +NP TGRAEL S+ LLTN TA Sbjct 121 PRWIHLASIWLVAVAVNVSAYFIIVANSFMQHPVGAIFNPETGRAELVSLTALLTNPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSS---TTHADSDTQAMYRPATILGCWVALAAT 237 AA+ H V+G+LLTAGTFVA ++ WW+++ S + + +++RP +G WV + + Sbjct 181 AAWPHAVTGSLLTAGTFVAGIAGWWMIKESRKDSAEKREEAASLWRPLFRIGSWVTILSA 240 Query 238 AGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYV 297 GL TGD QGKLMF QQPMKMA+AESLC T TDP FSVL++G N+C ++ +IE+P V Sbjct 241 VGLGVTGDIQGKLMFVQQPMKMAAAESLCQTATDPYFSVLSIGTHNDCGAVQHLIELPGV 300 Query 298 LPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALI 357 L FLA + SGVTLQG+ LQ++Y+Q +GP +Y PNLFVTYWSFR MIGLM ++ A++ Sbjct 301 LSFLAANKFSGVTLQGVEHLQKQYEQLYGPGNYTPNLFVTYWSFRAMIGLMLASIVLAVV 360 Query 358 ALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG------- 410 LW TR G +P RW AL+ +P PFLANSAGWVFTEMGRQPWVV PNP Sbjct 361 GLWYTRRGAVPRARWMGIGALIALPFPFLANSAGWVFTEMGRQPWVVAPNPDAAPGSPGN 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEG-PLEHDAEPAA 469 + L V GVS+++ VV TSL+ FTLVY LA +W WL+K+ +VEG P D+ P Sbjct 421 ADRIHLIVDFGVSNNAVWVVFTSLIGFTLVYGALACVWFWLMKKKVVEGMPTNVDSAPLV 480 Query 470 HGAPRDDEVAPLSFA 484 D V L F Sbjct 481 TPQDEDSSVRILQFG 495 >gi|300859119|ref|YP_003784102.1| cytochrome d ubiquinol oxidase subunit 1 [Corynebacterium pseudotuberculosis FRC41] gi|300686573|gb|ADK29495.1| cytochrome d ubiquinol oxidase subunit 1 [Corynebacterium pseudotuberculosis FRC41] Length=507 Score = 609 bits (1571), Expect = 3e-172, Method: Compositional matrix adjust. Identities = 300/495 (61%), Positives = 365/495 (74%), Gaps = 11/495 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M++VDISRWQFGITTVYHFIFVPLTIGLAP++A QT WV+T+ W R TKFFG LFL+ Sbjct 1 MDLVDISRWQFGITTVYHFIFVPLTIGLAPIVAGFQTAWVLTNKDKWLRATKFFGTLFLV 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGM WSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFAMGVVTGIVQEFQFGMAWSEYSRFVGDVFGAPLALEGLVAFFVESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR +HLA IW+VA+AVNVSA+FII ANSFMQHPVGA +NP TGRAEL S+ LLTN TA Sbjct 121 PRWIHLASIWLVAVAVNVSAYFIIVANSFMQHPVGAIFNPETGRAELVSLTALLTNPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSS---TTHADSDTQAMYRPATILGCWVALAAT 237 AA+ H V+G+LLTAGTFVA ++ WW+++ S + + +++RP +G WV + + Sbjct 181 AAWPHAVTGSLLTAGTFVAGIAGWWMIKESRKDSAEKREEAASLWRPLFRIGSWVTILSA 240 Query 238 AGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYV 297 GL TGD QGKLMF QQPMKMA+AESLC T TDP FSVL++G N+C ++ +IE+P V Sbjct 241 VGLGVTGDIQGKLMFVQQPMKMAAAESLCQTATDPYFSVLSIGTHNDCGAVQHLIELPGV 300 Query 298 LPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALI 357 L FLA + SGVTLQG+ LQ++Y+Q +GP +Y PNLFVTYWSFR MIGLM ++ A++ Sbjct 301 LSFLAANKFSGVTLQGVEHLQKQYEQLYGPGNYTPNLFVTYWSFRAMIGLMLASIVLAVV 360 Query 358 ALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG------- 410 LW TR G +P RW AL+ +P PFLANSAGWVFTEMGRQPWVV PNP Sbjct 361 GLWYTRRGAVPRARWMGIGALIALPFPFLANSAGWVFTEMGRQPWVVAPNPDAAPGSPGN 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEG-PLEHDAEPAA 469 + L V G+S+++ VV TSL+ FTLVY LA +W WL+K+ +VEG P D+ P Sbjct 421 ADRIHLIVDFGISNNAVWVVFTSLIGFTLVYGALACVWFWLMKKKVVEGMPTNVDSAPLV 480 Query 470 HGAPRDDEVAPLSFA 484 D V L F Sbjct 481 TPQDEDSSVRILQFG 495 >gi|340793145|ref|YP_004758608.1| cytochrome bd-type menaquinol oxidase subunit 1 [Corynebacterium variabile DSM 44702] gi|340533055|gb|AEK35535.1| cytochrome bd-type menaquinol oxidase subunit 1 [Corynebacterium variabile DSM 44702] Length=537 Score = 609 bits (1570), Expect = 4e-172, Method: Compositional matrix adjust. Identities = 308/504 (62%), Positives = 370/504 (74%), Gaps = 35/504 (6%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+VVDISRWQFGITTVYHFIFVPLTIGLAP++A MQT W VT PAWYR T+FFG + LI Sbjct 1 MDVVDISRWQFGITTVYHFIFVPLTIGLAPMVAAMQTFWHVTKKPAWYRATRFFGTVLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWS+YSR VGDVFG PLA+EGL AFF ESTF+GLWIFG ++ Sbjct 61 NFAMGVATGIVQEFQFGMNWSDYSRMVGDVFGGPLALEGLVAFFLESTFLGLWIFGAGKI 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P +H A IWIVA+AVN+SA+FII ANSFMQHPVGA YNP TGRAEL+ IV LLTN TA Sbjct 121 PAWLHTASIWIVAVAVNLSAYFIIVANSFMQHPVGAEYNPDTGRAELTDIVALLTNPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLV-----------------RSSTTHADSDTQA--- 220 AAF H V+G+LLTAGTFV ++ WW+V R++T D+DT A Sbjct 181 AAFPHAVAGSLLTAGTFVLGITGWWMVRDHRARLALQKTGELPARTATAGTDADTDAGSD 240 Query 221 ------MYRPATILGCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNF 274 +RPA L W L + GL TGD Q KLMF QQPMKMASAESLC T TDP F Sbjct 241 TDNRHDAHRPAHRLAWWTTLISAIGLFITGDTQAKLMFVQQPMKMASAESLCHTATDPMF 300 Query 275 SVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNL 334 SVLT+G NNC+++T +IE+P+VLPFLAEG+ +GVTLQG+ DLQQ+ + +G +Y PNL Sbjct 301 SVLTIGTHNNCENVTHLIELPWVLPFLAEGKFNGVTLQGVEDLQQQSEMLYGAGNYSPNL 360 Query 335 FVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQR---WFSWLALLTMPAPFLANSAG 391 FVTYW+FR MIGL+A + + W TR G++P + F W+ L+ +P PFLANSAG Sbjct 361 FVTYWAFRAMIGLLAGSGILLAASWWFTRKGRVPAGKAGTLFGWICLIAIPTPFLANSAG 420 Query 392 WVFTEMGRQPWVVVPNP--TGD---QLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAV 446 W+FTEMGRQPWVV PNP GD +++R+TV GVSDH+ V +L+ FTL+YAVLAV Sbjct 421 WIFTEMGRQPWVVHPNPDSVGDSRTEMIRMTVDMGVSDHAPWTVIVTLIGFTLLYAVLAV 480 Query 447 IWCWLLKRYIVEG-PLEHDAEPAA 469 IW WL++R I+ G P E PAA Sbjct 481 IWFWLIRRVILAGPPQETGPNPAA 504 >gi|337291481|ref|YP_004630502.1| cytochrome bd-type menaquinol oxidase subunit 1 [Corynebacterium ulcerans BR-AD22] gi|334699787|gb|AEG84583.1| cytochrome bd-type menaquinol oxidase subunit 1 [Corynebacterium ulcerans BR-AD22] Length=507 Score = 606 bits (1563), Expect = 2e-171, Method: Compositional matrix adjust. Identities = 301/488 (62%), Positives = 364/488 (75%), Gaps = 13/488 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M++VDISRWQFGITTVYHFIFVPLTIGLAP++A QT WV+T+ W R TKFFG LFL+ Sbjct 1 MDLVDISRWQFGITTVYHFIFVPLTIGLAPIVAGFQTAWVLTNKDKWLRATKFFGTLFLV 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGM WSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFAMGVVTGIVQEFQFGMAWSEYSRFVGDVFGAPLALEGLIAFFVESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR HLA IW+VA+AVNVSA+FII ANSFMQHPVGA +NP TGRAEL S+ LLTN TA Sbjct 121 PRWAHLASIWLVALAVNVSAYFIIVANSFMQHPVGAIFNPDTGRAELVSLTELLTNPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLV---RSSTTHADSDTQAMYRPATILGCWVALAAT 237 AA+ H V+G+LLTAGTFVA ++ WW++ R+ + + +++RP +G W+ L + Sbjct 181 AAWPHAVTGSLLTAGTFVAGIAGWWMIKEARNKSAEKREEAASVWRPLFRIGSWITLLSA 240 Query 238 AGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYV 297 AGL TGD QGKLMF QQPMKMA+AESLC T TDP FSVL+VG N+C ++ +IE+P + Sbjct 241 AGLGLTGDIQGKLMFVQQPMKMAAAESLCQTATDPYFSVLSVGTHNDCGAVKHLIELPGI 300 Query 298 LPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALI 357 L FLA + SGVTLQG+ LQ++Y+Q +GP +Y PNLFVTYWSFR MIGLM ++ A++ Sbjct 301 LSFLATNKFSGVTLQGVEQLQKQYEQLYGPGNYTPNLFVTYWSFRAMIGLMLASIVLAVV 360 Query 358 ALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT-------G 410 LW TR G +P RW AL+ +P PFLANSAGWVFTEMGRQPWVV PNP Sbjct 361 GLWYTRRGAVPRARWMGIGALIAVPFPFLANSAGWVFTEMGRQPWVVAPNPDVAPGSPGN 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEG-PLEHDAEPAA 469 + L V GVS++ VV TSL+ FTLVY LA +W WL+K+ +VEG P D+ P Sbjct 421 ADRIHLIVDFGVSNNPVWVVFTSLIGFTLVYGALACVWFWLMKKKVVEGMPTNVDSAPLV 480 Query 470 HGAPRDDE 477 P D+E Sbjct 481 --TPHDEE 486 >gi|334697506|gb|AEG82303.1| cytochrome bd-type menaquinol oxidase subunit 1 [Corynebacterium ulcerans 809] Length=507 Score = 606 bits (1563), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 301/488 (62%), Positives = 364/488 (75%), Gaps = 13/488 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M++VDISRWQFGITTVYHFIFVPLTIGLAP++A QT WV+T+ W R TKFFG LFL+ Sbjct 1 MDLVDISRWQFGITTVYHFIFVPLTIGLAPIVAGFQTAWVLTNKHKWLRATKFFGTLFLV 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGM WSEYSRFVGDVFGAPLA+EGL AFF ESTF+GLWIFGW RL Sbjct 61 NFAMGVVTGIVQEFQFGMAWSEYSRFVGDVFGAPLALEGLIAFFVESTFLGLWIFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR HLA IW+VA+AVNVSA+FII ANSFMQHPVGA +NP TGRAEL S+ LLTN TA Sbjct 121 PRWAHLASIWLVALAVNVSAYFIIVANSFMQHPVGAIFNPDTGRAELVSLTELLTNPTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLV---RSSTTHADSDTQAMYRPATILGCWVALAAT 237 AA+ H V+G+LLTAGTFVA ++ WW++ R+ + + +++RP +G W+ L + Sbjct 181 AAWPHAVTGSLLTAGTFVAGIAGWWMIKEARNKSAEKREEAASVWRPLFRIGSWITLLSA 240 Query 238 AGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYV 297 AGL TGD QGKLMF QQPMKMA+AESLC T TDP FSVL+VG N+C ++ +IE+P + Sbjct 241 AGLGLTGDIQGKLMFVQQPMKMAAAESLCQTATDPYFSVLSVGTHNDCGAVKHLIELPGI 300 Query 298 LPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALI 357 L FLA + SGVTLQG+ LQ++Y+Q +GP +Y PNLFVTYWSFR MIGLM ++ A++ Sbjct 301 LSFLATNKFSGVTLQGVEQLQKQYEQLYGPGNYTPNLFVTYWSFRAMIGLMLASIVLAVV 360 Query 358 ALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT-------G 410 LW TR G +P RW AL+ +P PFLANSAGWVFTEMGRQPWVV PNP Sbjct 361 GLWYTRRGAVPRARWMGIGALIAVPFPFLANSAGWVFTEMGRQPWVVAPNPDVAPGSPGN 420 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEG-PLEHDAEPAA 469 + L V GVS++ VV TSL+ FTLVY LA +W WL+K+ +VEG P D+ P Sbjct 421 ADRIHLIVDFGVSNNPVWVVFTSLIGFTLVYGALACVWFWLMKKKVVEGMPTNVDSAPLV 480 Query 470 HGAPRDDE 477 P D+E Sbjct 481 --TPHDEE 486 >gi|227506392|ref|ZP_03936441.1| possible cytochrome bd ubiquinol oxidase subunit I [Corynebacterium striatum ATCC 6940] gi|227197043|gb|EEI77091.1| possible cytochrome bd ubiquinol oxidase subunit I [Corynebacterium striatum ATCC 6940] Length=526 Score = 603 bits (1554), Expect = 3e-170, Method: Compositional matrix adjust. Identities = 292/496 (59%), Positives = 363/496 (74%), Gaps = 12/496 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 +++VDISRWQFGITTVYH+IFVPLT+GL P++A+MQT+W T NP W+R TKFFG LFLI Sbjct 14 LDLVDISRWQFGITTVYHYIFVPLTLGLGPMVAIMQTVWHRTGNPEWFRATKFFGNLFLI 73 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGMNWSEYSRFVGDVFGAPLA EGLAAFFFES F+G+WIFGW+R+ Sbjct 74 NFAMGVVTGIVQEFQFGMNWSEYSRFVGDVFGAPLAFEGLAAFFFESVFLGVWIFGWDRV 133 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+ HLA IW VAIAVNVSA+FII ANSFMQHPVGA ++ GRA L+ LLTN TA Sbjct 134 PKWAHLAAIWTVAIAVNVSAYFIIVANSFMQHPVGAAFDEVKGRATLTDFWALLTNPTAL 193 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTT-HADSDTQAMYRPATILGCWVALAATAG 239 AF H V+G + GT VA V+ WW++R + A ++R T G WV L TA Sbjct 194 QAFPHAVAGGWILGGTLVAGVAGWWMLRETRAGDAHGHAAGIWRSLTRFGSWVILVGTAA 253 Query 240 LLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLP 299 + TGD GKLMF QQPMKMASAE+LC+T+ DP FS+L+ NNC++ +++VPYVL Sbjct 254 VALTGDFLGKLMFVQQPMKMASAEALCETEMDPAFSILSFSSMNNCETAVHMLDVPYVLS 313 Query 300 FLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIAL 359 FLA+G SGV L+G+ +LQQ Y+ +GP +Y PNLFVTYWSFR+MIG +A+PV+ AL+AL Sbjct 314 FLAKGTFSGVELRGVNELQQTYEALYGPGNYTPNLFVTYWSFRLMIGFLAVPVILALVAL 373 Query 360 WLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG---DQLVRL 416 W TR ++P +W S ALL +PAP+L+N +GW+FTEMGRQPW+V PNP + + L Sbjct 374 WTTRSHRVPQAKWMSSAALLALPAPWLSNFSGWIFTEMGRQPWIVAPNPEAAGSAEKIHL 433 Query 417 TVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEG--------PLEHDAEPA 468 V G SDH VV TSL++FTL+Y +LAVIW WL++RY V G E D A Sbjct 434 IVDFGASDHPEWVVWTSLIVFTLLYGILAVIWFWLMRRYAVMGLNQPGLRDGDEKDLAAA 493 Query 469 AHGAPRDDEVAPLSFA 484 +G D E+ PLSF+ Sbjct 494 LYGPGEDTELQPLSFS 509 >gi|145295293|ref|YP_001138114.1| hypothetical protein cgR_1233 [Corynebacterium glutamicum R] gi|140845213|dbj|BAF54212.1| hypothetical protein [Corynebacterium glutamicum R] Length=513 Score = 601 bits (1550), Expect = 9e-170, Method: Compositional matrix adjust. Identities = 294/478 (62%), Positives = 360/478 (76%), Gaps = 13/478 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+VVDI+RWQFGITTVYHFIFVPLTIGLAPL+A+MQT W VT WYR T+FFG + LI Sbjct 1 MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFG PLA+EGL AFF ES F+GLWIFGW ++ Sbjct 61 NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P +H A IWIVAIA N+SA+FII ANSFMQHPVGA YNP TGRAEL+ LLTN+TA Sbjct 121 PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQ-----AMYRPATILGCWVALA 235 AAF H V+G LTAGTFV +S WW++R+ ++ + +M+RPA +G W + Sbjct 181 AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 ++ L TGD Q KLMF QQPMKMASAESLC+T TDPNFS+LT+G NNCD++T +I+VP Sbjct 241 SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 +VLPFLAEG+ +GVTLQG+ LQ +Q +GP +Y PNLFVTYWSFR MIGLM + A Sbjct 301 FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA 360 Query 356 LIALWLTRGGQIPN---QRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNP--TG 410 +IA L R + P R F +L+ +P PFLANSAGW+FTEMGRQPWVV PNP G Sbjct 361 VIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG 420 Query 411 D---QLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDA 465 D +++R+TV GVSDH+ V +L+ FT++Y +L V+W WL++R ++ GP E A Sbjct 421 DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGA 478 >gi|344045734|gb|EGV41404.1| hypothetical protein CgS9114_03428 [Corynebacterium glutamicum S9114] Length=513 Score = 601 bits (1549), Expect = 9e-170, Method: Compositional matrix adjust. Identities = 294/478 (62%), Positives = 360/478 (76%), Gaps = 13/478 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+VVDI+RWQFGITTVYHFIFVPLTIGLAPL+A+MQT W VT WYR T+FFG + LI Sbjct 1 MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFG PLA+EGL AFF ES F+GLWIFGW ++ Sbjct 61 NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P +H A IWIVAIA N+SA+FII ANSFMQHPVGA YNP TGRAEL+ LLTN+TA Sbjct 121 PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQ-----AMYRPATILGCWVALA 235 AAF H V+G LTAGTFV +S WW++R+ ++ + +M+RPA +G W + Sbjct 181 AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 ++ L TGD Q KLMF QQPMKMASAESLC+T TDPNFS+LT+G NNCD++T +I+VP Sbjct 241 SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 +VLPFLAEG+ +GVTLQG+ LQ +Q +GP +Y PNLFVTYWSFR MIGLM + A Sbjct 301 FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA 360 Query 356 LIALWLTRGGQIPN---QRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNP--TG 410 +IA L R + P R F +L+ +P PFLANSAGW+FTEMGRQPWVV PNP G Sbjct 361 VIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG 420 Query 411 D---QLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDA 465 D +++R+TV GVSDH+ V +L+ FT++Y +L V+W WL++R ++ GP E A Sbjct 421 DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGA 478 >gi|19552375|ref|NP_600377.1| cytochrome bd-type quinol oxidase, subunit 1 [Corynebacterium glutamicum ATCC 13032] gi|62390039|ref|YP_225441.1| cytochrome D ubiquinol oxidase subunit I [Corynebacterium glutamicum ATCC 13032] gi|21323917|dbj|BAB98543.1| Cytochrome bd-type quinol oxidase, subunit 1 [Corynebacterium glutamicum ATCC 13032] gi|41325375|emb|CAF19855.1| CYTOCHROME D UBIQUINOL OXIDASE SUBUNIT I [Corynebacterium glutamicum ATCC 13032] Length=513 Score = 600 bits (1548), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 294/478 (62%), Positives = 360/478 (76%), Gaps = 13/478 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+VVDI+RWQFGITTVYHFIFVPLTIGLAPL+A+MQT W VT WYR T+FFG + LI Sbjct 1 MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFG PLA+EGL AFF ES F+GLWIFGW ++ Sbjct 61 NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P +H A IWIVAIA N+SA+FII ANSFMQHPVGA YNP TGRAEL+ LLTN+TA Sbjct 121 PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQ-----AMYRPATILGCWVALA 235 AAF H V+G LTAGTFV +S WW++R+ ++++ +M+RPA +G W + Sbjct 181 AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAESEIESKHSMHRPALWVGWWTTVV 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 ++ L TGD Q KLMF QQPMKMASAESLC+T TDPNFS+LT+G NNCD++T +I+VP Sbjct 241 SSVALFITGDIQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 +VLPFLAEG+ +GVTLQG+ LQ +Q +GP +Y PNLFVTYWSFR MIGLM + A Sbjct 301 FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA 360 Query 356 LIALWLTRGGQIPN---QRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNP--TG 410 IA L R + P R F +L+ +P PFLANSAGW+FTEMGRQPWVV PNP G Sbjct 361 AIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG 420 Query 411 D---QLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDA 465 D +++R+TV GVSDH+ V +L+ FT++Y +L V+W WL++R ++ GP E A Sbjct 421 DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGA 478 >gi|8698552|dbj|BAA96840.1| cytochrome bd-type menaquinol oxidase subunit I [Corynebacterium glutamicum] Length=513 Score = 600 bits (1548), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 294/478 (62%), Positives = 359/478 (76%), Gaps = 13/478 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+VVDI+RWQFGITTVYHFIFVPLTIGLAPL+A+MQT W VT WYR T+FFG + LI Sbjct 1 MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFVGDVFG PLA+EGL AFF ES F+GLWIFGW ++ Sbjct 61 NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P +H A IWIVAIA N+SA+FII ANSFMQHPVGA YNP TGRAEL+ LLTN+TA Sbjct 121 PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQ-----AMYRPATILGCWVALA 235 AAF H V+G LTAGTFV +S WW++R+ ++ + +M+RPA +G W + Sbjct 181 AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 ++ L TGD Q KLMF QQPMKMASAESLC+T TDPNFS+LT+G NNCD++T +I+VP Sbjct 241 SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 +VLPFLAEG+ +GVTLQG+ LQ +Q +GP +Y PNLFVTYWSFR MIGLM + A Sbjct 301 FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA 360 Query 356 LIALWLTRGGQIPN---QRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNP--TG 410 IA L R + P R F +L+ +P PFLANSAGW+FTEMGRQPWVV PNP G Sbjct 361 AIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG 420 Query 411 D---QLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDA 465 D +++R+TV GVSDH+ V +L+ FT++Y +L V+W WL++R ++ GP E A Sbjct 421 DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGA 478 >gi|296118860|ref|ZP_06837435.1| cytochrome D ubiquinol oxidase, subunit 1 [Corynebacterium ammoniagenes DSM 20306] gi|295968140|gb|EFG81390.1| cytochrome D ubiquinol oxidase, subunit 1 [Corynebacterium ammoniagenes DSM 20306] Length=552 Score = 595 bits (1535), Expect = 4e-168, Method: Compositional matrix adjust. Identities = 289/499 (58%), Positives = 361/499 (73%), Gaps = 16/499 (3%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 +++VD+SRWQFGITTVYHFIFVPLTIGLAPL+A+MQT W T WYR T+FFG LFL+ Sbjct 12 VDLVDVSRWQFGITTVYHFIFVPLTIGLAPLVAIMQTAWHRTGKDMWYRATRFFGTLFLV 71 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TG+VQEFQFGMNWSEYSRFVGDVFG PLA+EGLAAFFFES F+G+WIFGW R+ Sbjct 72 NFAMGVVTGLVQEFQFGMNWSEYSRFVGDVFGGPLALEGLAAFFFESIFLGIWIFGWGRV 131 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR +HLA IWIVA A NVSA+FII ANSFMQHPVGA N GRAEL ++ LL+N A Sbjct 132 PRWIHLASIWIVAAATNVSAYFIIVANSFMQHPVGAAMNYENGRAELINVWELLSNPVAL 191 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVR-----SSTTHADSDTQAMYRPATILGCWVALA 235 AF H V+G++L AGTFVA +SAWW+VR + T D ++RP +G WV L Sbjct 192 VAFPHAVAGSVLVAGTFVAGISAWWMVRDRRHAAKTGENAEDAGQLWRPLLRMGLWVTLL 251 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 + TGD Q K+MF+ QPMKMASAE+LC T+ DP FS+L + N+C+S++ + VP Sbjct 252 GIVSVSITGDLQAKVMFEVQPMKMASAEALCYTEEDPWFSILAISTFNDCNSVSEIFSVP 311 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 +VL FLA G+ SGVTLQG+ DLQ + +Q +GP +Y PNLFVTYWSFR+MIG MA +L Sbjct 312 WVLSFLAGGQFSGVTLQGVTDLQAQAEQLYGPGNYSPNLFVTYWSFRLMIGFMAASILVV 371 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPN-------- 407 ++ WLTR + ++RWF+WL L+ +P PFL+NSAGW+FTEMGRQPWVV PN Sbjct 372 IVGFWLTRKKRTTDRRWFAWLGLIAIPFPFLSNSAGWIFTEMGRQPWVVYPNPDFGPENS 431 Query 408 PTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEP 467 P G+ + L V GVS+HS V SL+ FTL+Y +LAV+W WL++R++V G L A Sbjct 432 PNGENDIHLIVDFGVSNHSVATVWISLIAFTLIYGILAVVWFWLMRRFVVAGALASGASE 491 Query 468 ---AAHGAPRDDEVAPLSF 483 P +E+ PLSF Sbjct 492 NIVEDTYGPDAEELEPLSF 510 >gi|227548599|ref|ZP_03978648.1| possible cytochrome bd ubiquinol oxidase subunit I [Corynebacterium lipophiloflavum DSM 44291] gi|227079322|gb|EEI17285.1| possible cytochrome bd ubiquinol oxidase subunit I [Corynebacterium lipophiloflavum DSM 44291] Length=541 Score = 593 bits (1530), Expect = 1e-167, Method: Compositional matrix adjust. Identities = 294/502 (59%), Positives = 364/502 (73%), Gaps = 20/502 (3%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M++VD+SRWQFGITTVYHFIFVPLTIGLAPL+A+MQT W T WYR T+FFG LFLI Sbjct 1 MDLVDVSRWQFGITTVYHFIFVPLTIGLAPLVAMMQTAWHRTGKDMWYRATRFFGTLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGMNWSEYSRFVGDVFG PLA+EGLAAFFFES F+G+WIFGW R+ Sbjct 61 NFAMGVVTGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLAAFFFESIFLGVWIFGWERV 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR +HLA IWIVA A NVSA+FII ANSFMQHPVGA N GRAEL + LLTN A Sbjct 121 PRWMHLASIWIVAAATNVSAYFIIVANSFMQHPVGAAMNYENGRAELIDVWELLTNPVAL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQA-----MYRPATILGCWVALA 235 AF H V+G++L AGTFVA +SAWW+VRS A D + ++RP +G WV L Sbjct 181 VAFPHAVAGSVLVAGTFVAGISAWWMVRSRRHAAKMDGNSEDAGQLWRPLLRMGLWVTLL 240 Query 236 ATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVP 295 + TGD Q K+MF+ QPMKMASAE+LC T+ DP FS+L + N+C+S++ + VP Sbjct 241 GIVFVSITGDLQAKVMFEVQPMKMASAEALCHTEEDPWFSILAISTFNDCNSVSEIFSVP 300 Query 296 YVLPFLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFA 355 +VL FLA G+ +GVTLQG+ DLQ + +Q + P +Y PNLFVTYWSFR+MIG M +L Sbjct 301 WVLSFLAGGQFAGVTLQGVTDLQAQAEQLYRPGNYSPNLFVTYWSFRLMIGFMTASILVV 360 Query 356 LIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPN-------- 407 ++ WLTR + ++RWF+WL L+ +P PFL+NSAGW+FTEMGRQPWVV PN Sbjct 361 ILGFWLTRRKRTTDKRWFAWLGLIAIPFPFLSNSAGWIFTEMGRQPWVVYPNPDFGPENS 420 Query 408 PTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPL-----E 462 P G+ + + V GVS+HS T V SL+ FTL+Y VLAV+W WL++R++V G L E Sbjct 421 PNGENDIHMIVDFGVSNHSVTTVWISLIAFTLIYGVLAVVWFWLMRRFVVAGALAPGASE 480 Query 463 HDAEPAAHGAPRDDEVAPLSFA 484 + AE P +E+ PLSF+ Sbjct 481 NIAEDTY--GPDAEELEPLSFS 500 >gi|269794461|ref|YP_003313916.1| cytochrome bd-type quinol oxidase subunit 1 [Sanguibacter keddieii DSM 10542] gi|269096646|gb|ACZ21082.1| cytochrome bd-type quinol oxidase, subunit 1 [Sanguibacter keddieii DSM 10542] Length=496 Score = 588 bits (1515), Expect = 9e-166, Method: Compositional matrix adjust. Identities = 297/499 (60%), Positives = 370/499 (75%), Gaps = 17/499 (3%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+V+DI+RWQF ITTVYHF +VPLTIGLAPL+A+MQT WV T N W +LTKFFGKL LI Sbjct 1 MDVLDIARWQFAITTVYHFFYVPLTIGLAPLVAIMQTAWVRTGNERWLKLTKFFGKLLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGV TGIVQEFQFGMNWSEYSRFVGDVFGAPLAME LAAFF ESTF+GLWIFGW++L Sbjct 61 NFAIGVVTGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEALAAFFVESTFLGLWIFGWDKL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+ +HLACIW VA+A N+SA+FI+AANS+MQHPVGA +NP TGRAE++ I +LTNNT Sbjct 121 PKKIHLACIWAVAVATNLSAYFILAANSWMQHPVGAVFNPETGRAEMNDIWAVLTNNTLL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HT++ A LTAGTFVA ++AWW+VR + +YRPA ILG V + + AG+ Sbjct 181 AAFPHTITAAWLTAGTFVAGIAAWWMVREVRRGRKEVARDVYRPAVILGLVVMIVSGAGI 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPN---FSVLTVGR-QNNCDSLTRVIEVPY 296 +GD Q KLMFQQQPMKMA+AE+LC ++ PN FS+LT+G N+C+++T V+E+P Sbjct 241 AVSGDAQAKLMFQQQPMKMAAAEALC--ESSPNGAPFSILTLGNLANDCENVTHVLEIPG 298 Query 297 VLPFLAEGRISGVTLQGIRDLQQEYQQRFG-------PNDYRPNLFVTYWSFRMMIGLMA 349 + FLA+G S L GI ++QQ+ ++R+G P DY PNL +TYWSFR+MIGL A Sbjct 299 LTSFLADGSFSA-PLPGIDEVQQQMEERYGDTDAAGNPIDYSPNLALTYWSFRLMIGLGA 357 Query 350 IPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT 409 L A++ALWLTR G++ + W + + L+ +P PFLA+S GW+FTE GRQPWVVVPNPT Sbjct 358 GSALLAVMALWLTRKGRVSDSTWLARVGLIAIPMPFLASSFGWIFTEAGRQPWVVVPNPT 417 Query 410 GDQLVRLTVKAGVS-DHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLE--HDAE 466 G +R+ + GVS A VV S+ +FTLVY VL V+W L+ RY+VEG E HD Sbjct 418 GIDQIRMLTENGVSLAQGAGVVFASMAIFTLVYTVLTVVWVRLIWRYMVEGAPETVHDDS 477 Query 467 PAAHGAPRDDEVAPLSFAY 485 P A D PLSFAY Sbjct 478 PEARSDDDDTADRPLSFAY 496 >gi|227548092|ref|ZP_03978141.1| cytochrome D ubiquinol oxidase subunit 1 [Corynebacterium lipophiloflavum DSM 44291] gi|227079818|gb|EEI17781.1| cytochrome D ubiquinol oxidase subunit 1 [Corynebacterium lipophiloflavum DSM 44291] Length=524 Score = 586 bits (1511), Expect = 3e-165, Method: Compositional matrix adjust. Identities = 290/502 (58%), Positives = 360/502 (72%), Gaps = 19/502 (3%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 +++VD+SRWQFGITTVYH+IFVPLTIGLAP++A+MQTLW VT WYR T+FFG LFLI Sbjct 3 LDLVDLSRWQFGITTVYHYIFVPLTIGLAPVVAIMQTLWQVTGKEPWYRATRFFGNLFLI 62 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TG+VQEFQFGMNWSEY+ FVGDVFGAPLA EGLAAFFFES F+G+WIFGW R+ Sbjct 63 NFAMGVVTGLVQEFQFGMNWSEYASFVGDVFGAPLAFEGLAAFFFESVFLGVWIFGWGRV 122 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR HL IWIVA+AVNVSA+FII ANSFMQHPVGA YNP T RAEL LLTN TA Sbjct 123 PRWAHLVSIWIVAVAVNVSAYFIIVANSFMQHPVGARYNPETDRAELIDFAALLTNPTAV 182 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTT-HADSDTQAMYRPATILGCWVALAATAG 239 A H + A + AGTFV ++ WW+VR + DS ++R T G W+ L ++ G Sbjct 183 QAVPHAIFAAWMLAGTFVCGIAGWWMVREARQGDPDSTAATIWRTCTRFGAWIILVSSIG 242 Query 240 LLFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLP 299 + TGD KLMF QQPMKMASAE+LC T+TDP FS+L+V NNC++ +I VP+VLP Sbjct 243 VALTGDALAKLMFVQQPMKMASAEALCHTETDPYFSILSVSTMNNCETAIHLIGVPFVLP 302 Query 300 FLAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIAL 359 FLAEGR SGVTLQG DL +YQ+ +GP +Y PNLFVTYWSFR+MIG MA+P + A++AL Sbjct 303 FLAEGRFSGVTLQGAMDLNTQYQELYGPGNYIPNLFVTYWSFRLMIGFMAVPAIMAVVAL 362 Query 360 WLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPT--------GD 411 W TR ++P++ W L +PAP+++N +GW+FTEMGRQPWVV PNP+ G+ Sbjct 363 WKTRKKRVPSENWIQIACLAALPAPWISNFSGWIFTEMGRQPWVVHPNPSFQGVDGPNGE 422 Query 412 QLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDA------ 465 Q + + V GVSDH V SL +FT +Y +LAVIW L++RY + G L+ Sbjct 423 QNIHMIVDFGVSDHQPWQVLLSLGVFTALYGILAVIWFALMRRYTLYG-LDQPGMSAGDA 481 Query 466 ---EPAAHGAPRDDEVAPLSFA 484 A++G D E+ PLSF Sbjct 482 ANPAAASYGPADDAELEPLSFG 503 >gi|343925904|ref|ZP_08765419.1| cytochrome bd-type menaquinol oxidase subunit I [Gordonia alkanivorans NBRC 16433] gi|343764255|dbj|GAA12345.1| cytochrome bd-type menaquinol oxidase subunit I [Gordonia alkanivorans NBRC 16433] Length=526 Score = 571 bits (1471), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 293/527 (56%), Positives = 358/527 (68%), Gaps = 43/527 (8%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D+SRWQFGITTVYHFI VPLTIGLAP+IAVMQT+W VT N W R TKFFGKLFLI Sbjct 1 MDALDVSRWQFGITTVYHFILVPLTIGLAPMIAVMQTVWHVTGNEQWLRATKFFGKLFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSRFV DVFGAPLAMEGL AFF ESTFIGLWIFGW+RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRFVADVFGAPLAMEGLVAFFLESTFIGLWIFGWDRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR VHLACIW+ +I V SA+FIIAANS+MQHPVG ++ T R ++ ++TN+T Sbjct 121 PRRVHLACIWLASIGVIASAYFIIAANSWMQHPVGVVWDDTRDRPRMNDFWAVITNSTTL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVR-----------------------SSTTHADS- 216 AAF H ++GA LTAGTFVAA+ WW+ R +S +H D+ Sbjct 181 AAFPHVIAGAFLTAGTFVAAIGCWWMARNMWRAKKLRVAIDTGDTSEMPKTTSPSHIDAT 240 Query 217 ------DTQAMYRPATILGCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQT 270 D + +RP T L W+ +A+ GL TGD Q ++MF QQPMKMA+AESLC+TQT Sbjct 241 PEDLELDARRFWRPVTRLALWIVIASGVGLFITGDIQSQIMFNQQPMKMAAAESLCETQT 300 Query 271 DPNFSVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRF----- 325 FSVL +GRQNNCD++ VIE+P +L FLA+ TLQG+ +LQQ+Y + Sbjct 301 GAGFSVLAIGRQNNCDNIEHVIEIPKILSFLADHSFDS-TLQGVEELQQQYTEALAGQPG 359 Query 326 --GPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPA 383 ++ PNLFVTYWSFR MI V+ AL LWLTR ++ R F LAL +P Sbjct 360 VPAGQNFAPNLFVTYWSFRAMITWALGSVVVALGGLWLTRRKRVVESRKFGTLALWMIPT 419 Query 384 PFLANSAGWVFTEMGRQPWVVVPNPTGD---QLVRLTVKAGVSDHSATVVATSLLMFTLV 440 PFLANS+GW+FTEMGRQPWVV PN D + + V+ GVS+HSA V +L+ FTL+ Sbjct 420 PFLANSSGWIFTEMGRQPWVVAPNWENDLDPMRINMLVQNGVSNHSAATVWVTLIGFTLL 479 Query 441 YAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP--LSFAY 485 Y L V+W L +RY++EGP +D+ P H P D P LSFAY Sbjct 480 YGALGVVWFMLQRRYVIEGPATYDSRPPGHSDPDADSGEPKQLSFAY 526 >gi|256832878|ref|YP_003161605.1| cytochrome bd ubiquinol oxidase subunit I [Jonesia denitrificans DSM 20603] gi|256686409|gb|ACV09302.1| cytochrome bd ubiquinol oxidase subunit I [Jonesia denitrificans DSM 20603] Length=496 Score = 562 bits (1448), Expect = 5e-158, Method: Compositional matrix adjust. Identities = 283/497 (57%), Positives = 365/497 (74%), Gaps = 13/497 (2%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +DI+RWQFGITTVYHF +VPLTIGLAPL+A+MQT+WV T + W +LTKFFGKL LI Sbjct 1 MDPLDIARWQFGITTVYHFFYVPLTIGLAPLVAIMQTMWVRTQDERWLKLTKFFGKLLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGV TGIVQEFQFGMNW+EYSRFVGDVFGAPLAME LAAFF ESTF+GLWIFGW++L Sbjct 61 NFAIGVVTGIVQEFQFGMNWNEYSRFVGDVFGAPLAMEALAAFFVESTFLGLWIFGWDKL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 + +HLACIW VA++ +SA+FI+AANS+MQHPVGA +NP TGRAE+ IV +LTN+T Sbjct 121 NKKIHLACIWAVAVSTALSAYFILAANSWMQHPVGAVFNPETGRAEMVDIVAVLTNSTVL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HT++ A LTAGTFVA ++A+W+V+ + D +++Y+PA LG L A GL Sbjct 181 AAFPHTITAAWLTAGTFVAGIAAFWMVKEARRGRDDVARSIYKPALNLGLVTMLIAGVGL 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDT-QTDPNFSVLTVGR-QNNCDSLTRVIEVPYVL 298 +GD Q KLMF+QQPMKMA+AE+LC T + FS+LT+G N+C+S+ V+E+P + Sbjct 241 AISGDFQAKLMFEQQPMKMAAAEALCTTPEGGAPFSILTIGDLTNDCESVNHVLEIPGLT 300 Query 299 PFLAEGRISGVTLQGIRDLQQEYQQRFG-------PNDYRPNLFVTYWSFRMMIGLMAIP 351 FLA+G + L+GI +LQ+ Y +R+G P DY PNL +TYWSFR+MIG A Sbjct 301 SFLADGDFNA-QLRGIDELQEYYTERYGDVGPDGEPIDYSPNLAITYWSFRLMIGFAAFS 359 Query 352 VLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTG- 410 A +WLTR G+I N++WF+ L L+ +P PF+A++ GW+FTEMGRQPWVV PNPTG Sbjct 360 AALAAATMWLTRKGRITNKKWFARLGLIAIPTPFIASAFGWIFTEMGRQPWVVAPNPTGI 419 Query 411 DQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLE--HDAEPA 468 D++ LT A ++ SA V+ SL+ FT++Y L IW L+ RY+ G E HD P Sbjct 420 DEIRMLTWGAVTTNQSAGVMLFSLIAFTVIYTFLTAIWGMLIWRYMAHGAPETVHDESPE 479 Query 469 AHGAPRDDEVAPLSFAY 485 A+ +D APLSFAY Sbjct 480 ANPDRANDADAPLSFAY 496 >gi|332670934|ref|YP_004453942.1| cytochrome bd ubiquinol oxidase subunit I [Cellulomonas fimi ATCC 484] gi|332339972|gb|AEE46555.1| cytochrome bd ubiquinol oxidase subunit I [Cellulomonas fimi ATCC 484] Length=502 Score = 561 bits (1445), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 289/504 (58%), Positives = 364/504 (73%), Gaps = 21/504 (4%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ +D++RWQFGITTVYHFIFVPLTIGLAPL+A+MQT WV T + W RLTKFFGKL LI Sbjct 1 MDALDLARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWVRTGDERWLRLTKFFGKLLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFAIGVATGIVQEFQFGM WSEYSRFVGDVFGAPLAME LAAFF ESTF+GLWIFGW++L Sbjct 61 NFAIGVATGIVQEFQFGMAWSEYSRFVGDVFGAPLAMEALAAFFVESTFLGLWIFGWDKL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR +HLACIW VAIA N+SA+FI+AANS+MQHPVGA YNP TGRAE++ I +L+NNT Sbjct 121 PRKIHLACIWAVAIATNLSAYFILAANSWMQHPVGATYNPETGRAEMTDIGAVLSNNTLL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HT+S A LTAGT VAA++AWW+V+ + D +++YRPA ILG L + AG+ Sbjct 181 AAFPHTISAAFLTAGTLVAAIAAWWMVKLVRAGREDDARSVYRPAVILGVVTMLVSGAGV 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPN--FSVLTVGR-QNNCDSLTRVIEVPYV 297 +GD Q KLM++QQPMKM++AE++C T TD FS+L +G ++C+ + +IE+P + Sbjct 241 AISGDAQAKLMYEQQPMKMSAAEAICQT-TDGGAPFSILAIGDLSDSCEGVAHLIEIPGL 299 Query 298 LPFLAEGRISGVTLQGIRDLQQEYQQRFG-------PNDYRPNLFVTYWSFRMMIGLMAI 350 FLA G ++ L G+ DLQ +Y++ +G P Y+PNL VTYWSFR+MIG Sbjct 300 TSFLAHGDLT-TPLPGVEDLQAQYEETYGFTDEAGDPISYQPNLAVTYWSFRLMIGFGVG 358 Query 351 PVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVV--PNP 408 AL+ALW+TR G++ W S LA+ + PFLA++ GW+FTEMGRQPWVV PNP Sbjct 359 SAALALVALWVTRKGRVTGNVWVSRLAVAALATPFLASAFGWIFTEMGRQPWVVAPNPNP 418 Query 409 TGDQLVRLTVKAGVSDHSAT-VVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEP 467 +G V L GVS + + TSL+ FTL+Y VLAV+W L+ RY VEG + +P Sbjct 419 SGVDGVWLLTARGVSTVTGPGTILTSLVAFTLLYGVLAVLWYKLMHRYAVEGVAASEKDP 478 Query 468 A----AHGAPRDDEVA--PLSFAY 485 + A+ DDE PLSFAY Sbjct 479 SPDNPANRPDPDDESTDRPLSFAY 502 >gi|326384533|ref|ZP_08206212.1| cytochrome bd ubiquinol oxidase subunit I [Gordonia neofelifaecis NRRL B-59395] gi|326196667|gb|EGD53862.1| cytochrome bd ubiquinol oxidase subunit I [Gordonia neofelifaecis NRRL B-59395] Length=519 Score = 560 bits (1444), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 284/521 (55%), Positives = 358/521 (69%), Gaps = 38/521 (7%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+VVDISRWQFGITTVYHFI VPLTIGLAPLIAVMQT+W T N W R TKFFGK+FLI Sbjct 1 MSVVDISRWQFGITTVYHFILVPLTIGLAPLIAVMQTVWHRTGNEQWLRATKFFGKIFLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GVATGIVQEFQFGMNWSEYSR+V DVFGAPLA+E L AFF ESTFIGLW+FGW RL Sbjct 61 NFALGVATGIVQEFQFGMNWSEYSRYVADVFGAPLALEALMAFFLESTFIGLWMFGWGRL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 PR VHLACIW+VAI VN SA+FI+AANS+MQHPVG ++P GR +++ + ++TNNT Sbjct 121 PRRVHLACIWLVAIGVNASAYFIVAANSWMQHPVGVEWDPERGRPAMNNFIAVITNNTTL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRS------------------------------S 210 AF H + GA LTA T VA V WW+ R+ S Sbjct 181 VAFPHVIMGAFLTASTVVAIVGLWWMARNTYRASKIEEAAKLGDESIIPDTSSPSQVGAS 240 Query 211 TTHADSDTQAMYRPATILGCWVALAATAGLLFTGDHQGKLMFQQQPMKMASAESLCDTQT 270 D ++RP +I WV + + GL TGD Q ++MF+QQPMKMA+AESLC+T+T Sbjct 241 PAQLRHDNATLWRPVSIFALWVVIGSGLGLFVTGDMQAQIMFKQQPMKMAAAESLCETET 300 Query 271 DPNFSVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQEYQQRFG--PN 328 +FSVL+VGRQNNCD++ +I +P +L FLA+ + T+QG+ +LQ++Y++ Sbjct 301 GASFSVLSVGRQNNCDNIEHIITIPNMLSFLADHNFNS-TVQGVNELQKQYEEALNMPGQ 359 Query 329 DYRPNLFVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLAN 388 ++ PNLFVTYWSFR MI V+ A LW R + RWF L L +P PFLAN Sbjct 360 NFAPNLFVTYWSFRAMITWALGSVVVAFGGLWFLRKKRSDVPRWFGRLVLWMLPTPFLAN 419 Query 389 SAGWVFTEMGRQPWVVVPN---PTGDQL-VRLTVKAGVSDHSATVVATSLLMFTLVYAVL 444 ++GW+FTEMGRQPWVVVPN GD L + + V+ GVS+H++ +V T+L+ FTL+Y L Sbjct 420 ASGWIFTEMGRQPWVVVPNWADADGDPLRIHMLVQDGVSNHTSPMVWTTLIGFTLLYGAL 479 Query 445 AVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAPLSFAY 485 V+W +L +RY++EGP + DA G+ DDE A LSFAY Sbjct 480 GVVWFYLERRYVIEGPSDKDAAAPDVGS-DDDESAELSFAY 519 >gi|229820109|ref|YP_002881635.1| cytochrome bd ubiquinol oxidase subunit I [Beutenbergia cavernae DSM 12333] gi|229566022|gb|ACQ79873.1| cytochrome bd ubiquinol oxidase subunit I [Beutenbergia cavernae DSM 12333] Length=490 Score = 557 bits (1436), Expect = 1e-156, Method: Compositional matrix adjust. Identities = 288/491 (59%), Positives = 356/491 (73%), Gaps = 7/491 (1%) Query 1 MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI 60 M+ ++++RWQFGITTVYHFIFVPLTIGLAPL+A+MQT W VT W RLTKFFGKL LI Sbjct 1 MDALELARWQFGITTVYHFIFVPLTIGLAPLVAIMQTAWYVTGKDHWLRLTKFFGKLLLI 60 Query 61 NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL 120 NFA+GV TGIVQEFQFGMNWSEYSRFVGDVFGAPLA+EGLAAFF ESTF+GLWIFGW RL Sbjct 61 NFALGVVTGIVQEFQFGMNWSEYSRFVGDVFGAPLAIEGLAAFFVESTFLGLWIFGWERL 120 Query 121 PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ 180 P+LVHL CIW VA+AVN SA+FI+AANS+MQHPVGA +NP TGRAEL +LTNNT Sbjct 121 PKLVHLLCIWAVAVAVNASAYFILAANSWMQHPVGAIFNPDTGRAELVDFGAVLTNNTLL 180 Query 181 AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL 240 AAF HTVS A L AGTFVA V+ WW+VRS + +YRPA ILG + + AG+ Sbjct 181 AAFPHTVSAAFLVAGTFVAGVAGWWIVRSVRAGDVDLARTVYRPAAILGLATIVVSGAGV 240 Query 241 LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGR-QNNCDSLTRVIEVPYVLP 299 +GD Q KLM++QQP KMA+AE+LC+++ +FS+LT+G N+C+ + VI +P + Sbjct 241 AVSGDWQAKLMYEQQPGKMAAAEALCESEYGADFSILTIGDLSNSCEGVQHVIAIPGLTS 300 Query 300 FLAEGRISGVTLQGIRDLQQEYQQRFGPN-DYRPNLFVTYWSFRMMIGLMAIPVLFALIA 358 FL G G L G+ D+Q+EY R+G Y PNL VTYWSFR+MIG A+ Sbjct 301 FLGTGSFDGY-LPGVEDVQEEYSARYGGGPQYTPNLAVTYWSFRLMIGFAVFSAALAVAG 359 Query 359 LWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTV 418 +WL R G++ + RWFS L L+ +PAPF+A+S GW+FTEMGRQPWVV PNPTG ++RL Sbjct 360 MWLLRRGRVTDARWFSRLCLIAIPAPFVASSFGWIFTEMGRQPWVVAPNPTGVDMIRLLT 419 Query 419 KAGVSD-HSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRD-- 475 GVS A+ V TSL++FT++Y VLAV+W L++RY +G E A+ P D Sbjct 420 YDGVSTVVPASTVLTSLIVFTVLYGVLAVVWFTLIRRYAAKGVPEAAGPVASAENPPDDA 479 Query 476 -DEVAPLSFAY 485 D+ A L FAY Sbjct 480 RDDAARLDFAY 490 Lambda K H 0.326 0.138 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1032141390236 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40