BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1624c
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608762|ref|NP_216140.1| hypothetical protein Rv1624c [Mycob... 366 1e-99
gi|31792810|ref|NP_855303.1| hypothetical protein Mb1650c [Mycob... 364 4e-99
gi|289447232|ref|ZP_06436976.1| conserved membrane protein [Myco... 362 2e-98
gi|323719884|gb|EGB28997.1| membrane protein [Mycobacterium tube... 325 2e-87
gi|118617248|ref|YP_905580.1| hypothetical protein MUL_1605 [Myc... 304 4e-81
gi|240168001|ref|ZP_04746660.1| hypothetical protein MkanA1_0170... 284 5e-75
gi|41407415|ref|NP_960251.1| hypothetical protein MAP1317c [Myco... 269 1e-70
gi|336457903|gb|EGO36896.1| hypothetical protein MAPs_18650 [Myc... 259 1e-67
gi|118466101|ref|YP_882346.1| integral membrane protein [Mycobac... 251 3e-65
gi|254820975|ref|ZP_05225976.1| hypothetical protein MintA_13655... 250 8e-65
gi|120403815|ref|YP_953644.1| hypothetical protein Mvan_2831 [My... 243 1e-62
gi|333990765|ref|YP_004523379.1| hypothetical protein JDM601_212... 240 8e-62
gi|14670304|gb|AAK72093.1| hypothetical protein [Mycobacterium s... 239 2e-61
gi|296164492|ref|ZP_06847063.1| integral membrane protein [Mycob... 234 3e-60
gi|145224168|ref|YP_001134846.1| hypothetical protein Mflv_3584 ... 228 4e-58
gi|118473018|ref|YP_887547.1| integral membrane protein [Mycobac... 226 1e-57
gi|315444503|ref|YP_004077382.1| hypothetical protein Mspyr1_292... 225 3e-57
gi|342860805|ref|ZP_08717455.1| hypothetical protein MCOL_18078 ... 219 2e-55
gi|169630341|ref|YP_001703990.1| hypothetical protein MAB_3260c ... 186 1e-45
gi|29830716|ref|NP_825350.1| hypothetical protein SAV_4173 [Stre... 164 5e-39
gi|108800001|ref|YP_640198.1| hypothetical protein Mmcs_3035 [My... 164 7e-39
gi|126435630|ref|YP_001071321.1| hypothetical protein Mjls_3051 ... 164 8e-39
gi|54025076|ref|YP_119318.1| hypothetical protein nfa31070 [Noca... 160 1e-37
gi|328886721|emb|CCA59960.1| integral membrane protein [Streptom... 150 1e-34
gi|21222448|ref|NP_628227.1| integral membrane protein [Streptom... 150 1e-34
gi|297200770|ref|ZP_06918167.1| integral membrane protein [Strep... 148 4e-34
gi|333027015|ref|ZP_08455079.1| putative integral membrane prote... 147 5e-34
gi|289770370|ref|ZP_06529748.1| integral membrane protein [Strep... 146 1e-33
gi|302519153|ref|ZP_07271495.1| integral membrane protein [Strep... 145 4e-33
gi|318060251|ref|ZP_07978974.1| hypothetical protein SSA3_20071 ... 145 4e-33
gi|311899529|dbj|BAJ31937.1| hypothetical protein KSE_61710 [Kit... 144 7e-33
gi|302539936|ref|ZP_07292278.1| integral membrane protein [Strep... 144 7e-33
gi|295838819|ref|ZP_06825752.1| integral membrane protein [Strep... 141 5e-32
gi|294633385|ref|ZP_06711944.1| integral membrane protein [Strep... 138 4e-31
gi|318079100|ref|ZP_07986432.1| hypothetical protein SSA3_20890 ... 137 7e-31
gi|297155579|gb|ADI05291.1| hypothetical protein SBI_02170 [Stre... 137 9e-31
gi|345011466|ref|YP_004813820.1| hypothetical protein Strvi_3878... 137 1e-30
gi|326381705|ref|ZP_08203399.1| hypothetical protein SCNU_02120 ... 134 8e-30
gi|291442207|ref|ZP_06581597.1| integral membrane protein [Strep... 132 4e-29
gi|256397291|ref|YP_003118855.1| hypothetical protein Caci_8191 ... 122 3e-26
gi|302550443|ref|ZP_07302785.1| integral membrane protein [Strep... 117 6e-25
gi|296138669|ref|YP_003645912.1| hypothetical protein Tpau_0940 ... 116 2e-24
gi|296138319|ref|YP_003645562.1| hypothetical protein Tpau_0585 ... 115 5e-24
gi|296138082|ref|YP_003645325.1| hypothetical protein Tpau_0343 ... 111 5e-23
gi|309811578|ref|ZP_07705357.1| putative membrane protein [Derma... 101 6e-20
gi|229489652|ref|ZP_04383515.1| integral membrane protein [Rhodo... 80.9 8e-14
gi|29833877|ref|NP_828511.1| integral membrane protein [Streptom... 80.1 2e-13
gi|226305620|ref|YP_002765580.1| hypothetical protein RER_21330 ... 79.7 2e-13
gi|317508064|ref|ZP_07965749.1| hypothetical protein HMPREF9336_... 77.4 1e-12
gi|343924479|ref|ZP_08764028.1| hypothetical protein GOALK_016_0... 73.6 1e-11
>gi|15608762|ref|NP_216140.1| hypothetical protein Rv1624c [Mycobacterium tuberculosis H37Rv]
gi|15841079|ref|NP_336116.1| hypothetical protein MT1660 [Mycobacterium tuberculosis CDC1551]
gi|148661419|ref|YP_001282942.1| hypothetical protein MRA_1634 [Mycobacterium tuberculosis H37Ra]
54 more sequence titles
Length=195
Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL
Sbjct 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR
Sbjct 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE
Sbjct 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
Query 181 IASSFAIRKASQTLG 195
IASSFAIRKASQTLG
Sbjct 181 IASSFAIRKASQTLG 195
>gi|31792810|ref|NP_855303.1| hypothetical protein Mb1650c [Mycobacterium bovis AF2122/97]
gi|121637531|ref|YP_977754.1| hypothetical protein BCG_1662c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990006|ref|YP_002644693.1| hypothetical protein JTY_1637 [Mycobacterium bovis BCG str. Tokyo
172]
18 more sequence titles
Length=195
Score = 364 bits (934), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL
Sbjct 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR
Sbjct 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIG CE
Sbjct 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGACE 180
Query 181 IASSFAIRKASQTLG 195
IASSFAIRKASQTLG
Sbjct 181 IASSFAIRKASQTLG 195
>gi|289447232|ref|ZP_06436976.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
gi|289420190|gb|EFD17391.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=195
Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/195 (99%), Positives = 193/195 (99%), Gaps = 0/195 (0%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
MC TAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL
Sbjct 1 MCQTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR
Sbjct 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIG CE
Sbjct 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGACE 180
Query 181 IASSFAIRKASQTLG 195
IASSFAIRKASQTLG
Sbjct 181 IASSFAIRKASQTLG 195
>gi|323719884|gb|EGB28997.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|339294579|gb|AEJ46690.1| hypothetical protein CCDC5079_1500 [Mycobacterium tuberculosis
CCDC5079]
gi|339298216|gb|AEJ50326.1| hypothetical protein CCDC5180_1489 [Mycobacterium tuberculosis
CCDC5180]
Length=177
Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/177 (99%), Positives = 177/177 (100%), Gaps = 0/177 (0%)
Query 19 LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 78
+LPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA
Sbjct 1 MLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 60
Query 79 GGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRG 138
GGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRG
Sbjct 61 GGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRG 120
Query 139 WSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG 195
WSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG
Sbjct 121 WSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG 177
>gi|118617248|ref|YP_905580.1| hypothetical protein MUL_1605 [Mycobacterium ulcerans Agy99]
gi|183982441|ref|YP_001850732.1| hypothetical protein MMAR_2427 [Mycobacterium marinum M]
gi|118569358|gb|ABL04109.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
gi|183175767|gb|ACC40877.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=192
Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/195 (83%), Positives = 176/195 (91%), Gaps = 4/195 (2%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
MCHTA ME SPV P LLPHLWKSTL SGILSLILG L+LAWPGIS+LVAA+AFGVYL
Sbjct 1 MCHTAAMETSPV----PSLLPHLWKSTLTSGILSLILGALILAWPGISVLVAAVAFGVYL 56
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
++TG+AQV FAFSLHVSAG RILLFISGAASLILAVLAFRHFG+AVLLLAIWIGIGFIFR
Sbjct 57 ILTGIAQVMFAFSLHVSAGSRILLFISGAASLILAVLAFRHFGNAVLLLAIWIGIGFIFR 116
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVATTVSAISDP LPGRGWSIF+GVISLIAG+VVM +PFESI LA+VVG+WLVVIG E
Sbjct 117 GVATTVSAISDPTLPGRGWSIFIGVISLIAGVVVMGAPFESIITLAIVVGVWLVVIGAFE 176
Query 181 IASSFAIRKASQTLG 195
+ SSF IRKAS++LG
Sbjct 177 VVSSFGIRKASKSLG 191
>gi|240168001|ref|ZP_04746660.1| hypothetical protein MkanA1_01705 [Mycobacterium kansasii ATCC
12478]
Length=196
Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/195 (80%), Positives = 176/195 (91%), Gaps = 0/195 (0%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
M HT M+ +PV P+PRLLPHLWKSTL SG+LSLILGVL+L WPGIS+LVAA+AFG YL
Sbjct 1 MRHTGVMQTAPVSGPVPRLLPHLWKSTLLSGLLSLILGVLILVWPGISVLVAAVAFGAYL 60
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
++TG+AQV AFSLHVSAG RIL FISGAASLILAVLAFRHFG+AVLLLAIWIGIGFIFR
Sbjct 61 VVTGIAQVFLAFSLHVSAGSRILAFISGAASLILAVLAFRHFGNAVLLLAIWIGIGFIFR 120
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVATTVSAI+DP LPGRGW IFVGVISLIAG+VVMA+PFESI LA+VVG+WLV+IG CE
Sbjct 121 GVATTVSAINDPTLPGRGWQIFVGVISLIAGVVVMAAPFESIITLAIVVGVWLVIIGACE 180
Query 181 IASSFAIRKASQTLG 195
IAS+F IRKA++TLG
Sbjct 181 IASAFGIRKAAKTLG 195
>gi|41407415|ref|NP_960251.1| hypothetical protein MAP1317c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395767|gb|AAS03634.1| hypothetical protein MAP_1317c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=197
Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/196 (81%), Positives = 171/196 (88%), Gaps = 3/196 (1%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
MC TA M SP SP+P LLPHLWKS L SGILSL LGVLVL WPGISILVAA+AFGVYL
Sbjct 1 MCQTAAMTMSPG-SPVPSLLPHLWKSALLSGILSLALGVLVLVWPGISILVAAVAFGVYL 59
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGD--AVLLLAIWIGIGFI 118
LITG+AQV FAFSLHVSAG R+LLFISGAASLILA+LAFRHFG A+LLLAIWIGIGFI
Sbjct 60 LITGIAQVVFAFSLHVSAGSRVLLFISGAASLILALLAFRHFGQGYAILLLAIWIGIGFI 119
Query 119 FRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGT 178
FRGVATT+SA+SDP LPGRGW+IF+GVISL+AGIVV+ASPFESI LA+VVG W VVIG
Sbjct 120 FRGVATTISAVSDPNLPGRGWNIFLGVISLLAGIVVLASPFESIVTLAIVVGAWFVVIGV 179
Query 179 CEIASSFAIRKASQTL 194
EI SSF IRKAS+TL
Sbjct 180 FEIISSFGIRKASKTL 195
>gi|336457903|gb|EGO36896.1| hypothetical protein MAPs_18650 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=191
Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/183 (82%), Positives = 164/183 (90%), Gaps = 2/183 (1%)
Query 14 SPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFS 73
SP+P LLPHLWKS L SGILSL LGVLVL WPGISILVAA+AFGVYLLITG+AQV FAFS
Sbjct 7 SPVPSLLPHLWKSALLSGILSLALGVLVLVWPGISILVAAVAFGVYLLITGIAQVVFAFS 66
Query 74 LHVSAGGRILLFISGAASLILAVLAFRHFGD--AVLLLAIWIGIGFIFRGVATTVSAISD 131
LHVSAG R+LLFISGAASLILA+LAFRHFG A+LLLAIWIGIGFIFRGVATT+SA+SD
Sbjct 67 LHVSAGSRVLLFISGAASLILALLAFRHFGQGYAILLLAIWIGIGFIFRGVATTISAVSD 126
Query 132 PMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKAS 191
P LPGRGW+IF+GVISL+AGIVV+ASPFESI LA+VVG W VVIG EI SSF IRKAS
Sbjct 127 PNLPGRGWNIFLGVISLLAGIVVLASPFESIVTLAIVVGAWFVVIGVFEIISSFGIRKAS 186
Query 192 QTL 194
+TL
Sbjct 187 KTL 189
>gi|118466101|ref|YP_882346.1| integral membrane protein [Mycobacterium avium 104]
gi|254775610|ref|ZP_05217126.1| hypothetical protein MaviaA2_13208 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118167388|gb|ABK68285.1| integral membrane protein [Mycobacterium avium 104]
Length=180
Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/178 (83%), Positives = 160/178 (90%), Gaps = 2/178 (1%)
Query 19 LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 78
+LPHLWKS L SGILSL LGVLVL WPGISILVAA+AFGVYLLITG+AQV FAFSLHVSA
Sbjct 1 MLPHLWKSALLSGILSLALGVLVLVWPGISILVAAVAFGVYLLITGIAQVVFAFSLHVSA 60
Query 79 GGRILLFISGAASLILAVLAFRHFGD--AVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
G R+LLFISGAASLILA+LAFRHFG A+LLLAIWIGIGFIFRGVATT+SA+SDP LPG
Sbjct 61 GSRVLLFISGAASLILALLAFRHFGQGYAILLLAIWIGIGFIFRGVATTISAVSDPNLPG 120
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
RGW+IF+GVISL+AGIVV+ASPFESI LA+VVG W VVIG EI SSF IRKAS+TL
Sbjct 121 RGWNIFLGVISLLAGIVVLASPFESIVTLAIVVGAWFVVIGVFEIISSFGIRKASKTL 178
>gi|254820975|ref|ZP_05225976.1| hypothetical protein MintA_13655 [Mycobacterium intracellulare
ATCC 13950]
Length=180
Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/179 (80%), Positives = 162/179 (91%), Gaps = 2/179 (1%)
Query 19 LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 78
+LPHLWKS L SGILS++LGVLVLAWPGISILVAA+AFGVYLLITG+AQV FAFSLHVSA
Sbjct 1 MLPHLWKSALLSGILSIVLGVLVLAWPGISILVAAVAFGVYLLITGIAQVVFAFSLHVSA 60
Query 79 GGRILLFISGAASLILAVLAFRHFGD--AVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
G R+LLFISGAASLILA+LAFRHFG A+LLLAIWIGIGFIFRGVATT+SA+SDP LPG
Sbjct 61 GSRVLLFISGAASLILALLAFRHFGQGYAILLLAIWIGIGFIFRGVATTISAVSDPHLPG 120
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG 195
RGW+IF+GV+SL+AGIVV+ASPFESI LA+VVG W VVIG E+ S+F IRKAS +LG
Sbjct 121 RGWNIFLGVLSLLAGIVVVASPFESIVTLAIVVGAWFVVIGIFEVISAFGIRKASNSLG 179
>gi|120403815|ref|YP_953644.1| hypothetical protein Mvan_2831 [Mycobacterium vanbaalenii PYR-1]
gi|119956633|gb|ABM13638.1| protein of unknown function DUF308, membrane [Mycobacterium vanbaalenii
PYR-1]
Length=197
Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/178 (70%), Positives = 151/178 (85%), Gaps = 0/178 (0%)
Query 17 PRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHV 76
P +L HLWKS L SGIL++ LGV+VL WPGI+I+VAA+ FG YLLITG+ QV FAFSLHV
Sbjct 7 PSMLQHLWKSALVSGILAVALGVMVLIWPGITIVVAAIFFGAYLLITGITQVFFAFSLHV 66
Query 77 SAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
SAGGR+LLF+SGAA+LILAVL FR +++LLLAIWIGIGF+FRGVAT VSAISDP LPG
Sbjct 67 SAGGRVLLFLSGAAALILAVLCFRSLQESILLLAIWIGIGFVFRGVATAVSAISDPTLPG 126
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
R W IF+GVISLIAG+V++A+PFES+ L +VVGIWL+V+G E+ S+F IR AS+ L
Sbjct 127 RAWEIFIGVISLIAGVVMLAAPFESLATLTMVVGIWLIVLGVFEVVSAFGIRSASKKL 184
>gi|333990765|ref|YP_004523379.1| hypothetical protein JDM601_2125 [Mycobacterium sp. JDM601]
gi|333486733|gb|AEF36125.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=197
Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 133/193 (69%), Positives = 157/193 (82%), Gaps = 10/193 (5%)
Query 7 MEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVA 66
ME + V P+LLPHLWKSTL SG+L+L+LGVL+LA PG SILVAA+ FGVYLLITGVA
Sbjct 1 METTAV----PKLLPHLWKSTLVSGVLALVLGVLILARPGNSILVAAILFGVYLLITGVA 56
Query 67 QVAFAFSLHV-SAGGRILLFISGAASLILAVLAFRHFGD-----AVLLLAIWIGIGFIFR 120
Q FAFSL V S GGR+LLFISGAASLILAVL FRHF AVLLLAIWI +GFIFR
Sbjct 57 QTIFAFSLPVMSVGGRVLLFISGAASLILAVLCFRHFNSDEEALAVLLLAIWIAVGFIFR 116
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVAT V+ ISDP LPGRGW IF+GV+SL+AG+V +A+PF S+WILALVVG WL+VIG E
Sbjct 117 GVATAVAGISDPELPGRGWQIFMGVLSLLAGLVTLAAPFTSLWILALVVGSWLIVIGIAE 176
Query 181 IASSFAIRKASQT 193
I ++ +IR+A++
Sbjct 177 IITAISIRRAARN 189
>gi|14670304|gb|AAK72093.1| hypothetical protein [Mycobacterium smegmatis str. MC2 155]
Length=205
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/195 (68%), Positives = 163/195 (84%), Gaps = 4/195 (2%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
MCH + ME + P LLPHLWK+TL SG+L+++LGVLVLAWPGI++LVAA+ FG YL
Sbjct 1 MCHNSAMETTAA----PSLLPHLWKATLVSGVLAVVLGVLVLAWPGITLLVAAICFGAYL 56
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
LITGVAQV FAFSLHVSAGGR+LLF+SGAA+LILAVL FR +++LLLAIWIG+GF+FR
Sbjct 57 LITGVAQVIFAFSLHVSAGGRVLLFVSGAAALILAVLCFRSLQESILLLAIWIGVGFVFR 116
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
GVAT VSAISDP LPGRGW IF GVISL+AG+V++A+PFES+ LA+VVG+WL+V+G E
Sbjct 117 GVATAVSAISDPALPGRGWEIFFGVISLLAGVVMLAAPFESLATLAIVVGVWLIVLGVFE 176
Query 181 IASSFAIRKASQTLG 195
+ S+F IR + LG
Sbjct 177 VVSAFGIRSGVRKLG 191
>gi|296164492|ref|ZP_06847063.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900092|gb|EFG79527.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=180
Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/178 (83%), Positives = 158/178 (89%), Gaps = 2/178 (1%)
Query 19 LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 78
+LPHLWKSTL SG+LSL LGVLVLAWPGISI+VAA AFG+YLLITG AQV FAFSLHVSA
Sbjct 1 MLPHLWKSTLLSGLLSLALGVLVLAWPGISIVVAATAFGIYLLITGAAQVFFAFSLHVSA 60
Query 79 GGRILLFISGAASLILAVLAFRHFGD--AVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
G RILLFISGAASLILA+LAFRHFG A+LLLAIWIGIGFIFRGV TTVSAI DP LPG
Sbjct 61 GSRILLFISGAASLILALLAFRHFGQGYAILLLAIWIGIGFIFRGVGTTVSAIQDPQLPG 120
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
RGW+IF+GVISL+AGIVV+ASP ESI LALVVG+W VV+G EI SSF IRKASQTL
Sbjct 121 RGWAIFIGVISLLAGIVVLASPLESIVTLALVVGVWFVVLGIFEIVSSFGIRKASQTL 178
>gi|145224168|ref|YP_001134846.1| hypothetical protein Mflv_3584 [Mycobacterium gilvum PYR-GCK]
gi|145216654|gb|ABP46058.1| protein of unknown function DUF308, membrane [Mycobacterium gilvum
PYR-GCK]
Length=197
Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/178 (69%), Positives = 149/178 (84%), Gaps = 0/178 (0%)
Query 17 PRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHV 76
P +L HLWK+ L SGIL++ILG LV WP IS+ VAA+ F YLL+TG+ QV FAF+LHV
Sbjct 7 PSMLQHLWKTALLSGILAIILGALVWFWPAISVFVAAVFFAAYLLVTGITQVVFAFALHV 66
Query 77 SAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
SA GR+LLF+SGAA+LILAV+ R+FG+AVLLLAIWIGIGFIFRGVAT VSAISDP LPG
Sbjct 67 SASGRVLLFLSGAAALILAVMCIRNFGNAVLLLAIWIGIGFIFRGVATAVSAISDPHLPG 126
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
RGW IF+GVISLIAG++++A+PF+SI L +VVGIWLVV+G E+ S+F IR AS+ L
Sbjct 127 RGWEIFIGVISLIAGVIMLAAPFDSIETLTMVVGIWLVVLGVFEVISAFGIRSASRDL 184
>gi|118473018|ref|YP_887547.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118174305|gb|ABK75201.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=191
Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/177 (71%), Positives = 155/177 (88%), Gaps = 0/177 (0%)
Query 19 LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 78
+LPHLWK+TL SG+L+++LGVLVLAWPGI++LVAA+ FG YLLITGVAQV FAFSLHVSA
Sbjct 1 MLPHLWKATLVSGVLAVVLGVLVLAWPGITLLVAAICFGAYLLITGVAQVIFAFSLHVSA 60
Query 79 GGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRG 138
GGR+LLF+SGAA+LILAVL FR +++LLLAIWIG+GF+FRGVAT VSAISDP LPGRG
Sbjct 61 GGRVLLFVSGAAALILAVLCFRSLQESILLLAIWIGVGFVFRGVATAVSAISDPALPGRG 120
Query 139 WSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG 195
W IF GVISL+AG+V++A+PFES+ LA+VVG+WL+V+G E+ S+F IR + LG
Sbjct 121 WEIFFGVISLLAGVVMLAAPFESLATLAIVVGVWLIVLGVFEVVSAFGIRSGVRKLG 177
>gi|315444503|ref|YP_004077382.1| hypothetical protein Mspyr1_29280 [Mycobacterium sp. Spyr1]
gi|315262806|gb|ADT99547.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=189
Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/176 (69%), Positives = 148/176 (85%), Gaps = 0/176 (0%)
Query 19 LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSA 78
+L HLWK+ L SGIL++ILG LV WP IS+ VAA+ F YLL+TG+ QV FAF+LHVSA
Sbjct 1 MLQHLWKTALLSGILAIILGALVWFWPAISVFVAAVFFAAYLLVTGITQVVFAFALHVSA 60
Query 79 GGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRG 138
GR+LLF+SGAA+LILAV+ R+FG+AVLLLAIWIGIGFIFRGVAT VSAISDP LPGRG
Sbjct 61 SGRVLLFLSGAAALILAVMCIRNFGNAVLLLAIWIGIGFIFRGVATAVSAISDPHLPGRG 120
Query 139 WSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
W IF+GVISLIAG++++A+PF+SI L +VVGIWLVV+G E+ S+F IR AS+ L
Sbjct 121 WEIFIGVISLIAGVIMLAAPFDSIETLTMVVGIWLVVLGVFEVISAFGIRSASRDL 176
>gi|342860805|ref|ZP_08717455.1| hypothetical protein MCOL_18078 [Mycobacterium colombiense CECT
3035]
gi|342131829|gb|EGT85086.1| hypothetical protein MCOL_18078 [Mycobacterium colombiense CECT
3035]
Length=158
Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/155 (82%), Positives = 141/155 (91%), Gaps = 2/155 (1%)
Query 42 LAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRH 101
LAWPGISILVAA+AFGVYLLITG+AQV FAFSLHVSAG R+LLFISGAASLILA+LAFRH
Sbjct 2 LAWPGISILVAAVAFGVYLLITGIAQVVFAFSLHVSAGSRVLLFISGAASLILALLAFRH 61
Query 102 FGD--AVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPF 159
FG A+LLLAIWIG+GFIFRGVATT+SA+SDP LPGRGW+IFVGVISL+AGIVV+ASPF
Sbjct 62 FGQGYAILLLAIWIGVGFIFRGVATTISAVSDPHLPGRGWNIFVGVISLLAGIVVLASPF 121
Query 160 ESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
+SI LA+VVG W VVIG EI SSF IRKAS+TL
Sbjct 122 QSIVTLAIVVGAWFVVIGVFEIISSFGIRKASKTL 156
>gi|169630341|ref|YP_001703990.1| hypothetical protein MAB_3260c [Mycobacterium abscessus ATCC
19977]
gi|169242308|emb|CAM63336.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=186
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/178 (55%), Positives = 136/178 (77%), Gaps = 1/178 (0%)
Query 17 PRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHV 76
L+ HLWKS + SG+L++I+G +L WP IS+ VAA+ FGVYLL++GVAQ+ FAF+L V
Sbjct 7 QDLVKHLWKSAVVSGVLAVIVGAAILIWPQISVFVAAIFFGVYLLVSGVAQIVFAFALPV 66
Query 77 SAGG-RILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLP 135
S+ G R+LLF++GAAS +L VL F+ +++LLLAIWIG+G+I +G+A T++A+SD +P
Sbjct 67 SSAGMRVLLFLTGAASFVLGVLCFKDELNSILLLAIWIGVGWIAQGIAGTITAVSDKDIP 126
Query 136 GRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQT 193
GRGW IF G+IS +AGIV++ P SI L LVVGIWL+VIG +I S IR A+++
Sbjct 127 GRGWQIFSGIISTLAGIVLIVYPISSIVTLTLVVGIWLIVIGVMQIGSGIGIRAATKS 184
>gi|29830716|ref|NP_825350.1| hypothetical protein SAV_4173 [Streptomyces avermitilis MA-4680]
gi|29607829|dbj|BAC71885.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length=222
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/199 (46%), Positives = 130/199 (66%), Gaps = 7/199 (3%)
Query 3 HTAPMEP-------SPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMA 55
H A +P V PL L W S L +GI +L+LGV+VLAWP +++VA +
Sbjct 20 HAAARDPLADRSGRDAVEGPLHVLSRTAWHSLLVAGIAALVLGVMVLAWPETTLVVAGVL 79
Query 56 FGVYLLITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGI 115
FG+YLL +GV Q+A AF HV+ R++ FISG S++L + R ++LLLA+WIGI
Sbjct 80 FGLYLLFSGVLQLASAFGTHVATSLRVMAFISGTLSILLGLFCLRGAMQSILLLALWIGI 139
Query 116 GFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVV 175
G++FRGV T++A SDP P RGW I +G++S +AGIV++ SPF S+ +LALV G WL+
Sbjct 140 GWLFRGVTLTLAAASDPEAPARGWQIVLGIVSFLAGIVLIVSPFTSVGVLALVGGCWLIA 199
Query 176 IGTCEIASSFAIRKASQTL 194
+G EI ++ IR+ ++ L
Sbjct 200 VGVTEIVTALRIRRITKQL 218
>gi|108800001|ref|YP_640198.1| hypothetical protein Mmcs_3035 [Mycobacterium sp. MCS]
gi|119869126|ref|YP_939078.1| hypothetical protein Mkms_3094 [Mycobacterium sp. KMS]
gi|108770420|gb|ABG09142.1| protein of unknown function DUF308, membrane [Mycobacterium sp.
MCS]
gi|119695215|gb|ABL92288.1| protein of unknown function DUF308, membrane [Mycobacterium sp.
KMS]
Length=193
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/179 (55%), Positives = 129/179 (73%), Gaps = 0/179 (0%)
Query 17 PRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHV 76
P +L HLW T+ SG+L+++LGVL+ PG +ILV A+ FG YLL+TGVAQ+ AFS+
Sbjct 7 PSMLRHLWIYTVVSGLLAVLLGVLIFVRPGAAILVTAIFFGAYLLVTGVAQLVLAFSVRS 66
Query 77 SAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
S GGR+LLFI GAA+L+LAVL F + +++ LLAIWIG+GFIFRGVAT +SA SD LPG
Sbjct 67 SLGGRVLLFIGGAAALVLAVLCFLNLSESIDLLAIWIGVGFIFRGVATAMSAFSDHSLPG 126
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG 195
R W I +GVIS++AGI++ +P E + L V GI LVVIG E+ + IR+ + G
Sbjct 127 RIWEIILGVISVLAGIIMFVAPLEGLVALTQVTGIILVVIGIVEVIAGIRIRREAPATG 185
>gi|126435630|ref|YP_001071321.1| hypothetical protein Mjls_3051 [Mycobacterium sp. JLS]
gi|126235430|gb|ABN98830.1| protein of unknown function DUF308, membrane [Mycobacterium sp.
JLS]
Length=193
Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 97/179 (55%), Positives = 129/179 (73%), Gaps = 0/179 (0%)
Query 17 PRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHV 76
P +L HLW T+ SG+L+++LGVL+ PG +ILV A+ FG YLL+TGVAQ+ AFS+
Sbjct 7 PSMLRHLWIYTVVSGLLAVLLGVLIFVRPGAAILVTAIFFGAYLLVTGVAQLVLAFSVRS 66
Query 77 SAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPG 136
S GGR+LLFI GAA+L+LAVL F + +++ LLAIWIG+GFIFRGVAT +SA SD LPG
Sbjct 67 SLGGRVLLFIGGAAALVLAVLCFLNLSESIDLLAIWIGVGFIFRGVATAMSAFSDHSLPG 126
Query 137 RGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTLG 195
R W I +GVIS++AGI++ +P E + L V GI LVVIG E+ + IR+ + G
Sbjct 127 RIWEIILGVISVLAGIIMFVAPLEGLVALTQVTGIILVVIGIVEVIAGIRIRREAPATG 185
>gi|54025076|ref|YP_119318.1| hypothetical protein nfa31070 [Nocardia farcinica IFM 10152]
gi|54016584|dbj|BAD57954.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=203
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/189 (44%), Positives = 131/189 (70%), Gaps = 1/189 (0%)
Query 7 MEPSPVVS-PLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGV 65
M VV P+ L W++ L +G+LS+ILG++VL WPG +++VA + FG+YL+++GV
Sbjct 1 MTTDEVVEGPVRALAKAAWQTVLVTGVLSVILGIVVLVWPGKTLVVAGILFGIYLVVSGV 60
Query 66 AQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATT 125
Q+ AF +AG R+L F+SG S+++ V FR ++LLL +WIGIG++FRGV+
Sbjct 61 LQLMAAFGATRTAGMRVLYFLSGVLSIVIGVFCFRDELASILLLGLWIGIGWLFRGVSVL 120
Query 126 VSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSF 185
V+AIS+P LPGRGW F G+++++AGIV++ P S+ L LV G+WL+V+G EI ++
Sbjct 121 VAAISEPALPGRGWQGFFGLVTVVAGIVLIVWPVTSVATLTLVAGVWLIVLGVMEIITAI 180
Query 186 AIRKASQTL 194
+R+ ++ L
Sbjct 181 GVRRDAKRL 189
>gi|328886721|emb|CCA59960.1| integral membrane protein [Streptomyces venezuelae ATCC 10712]
Length=202
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/196 (44%), Positives = 129/196 (66%), Gaps = 2/196 (1%)
Query 1 MCHTAPMEPSPVVSPLPR--LLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGV 58
H P + P P L W++ L +G +L+LGVLVL WPG S+ VA + FG+
Sbjct 3 QAHDHPPRHDHDIPPGPLGVLAGAAWQALLVAGFAALVLGVLVLVWPGASLFVAGVLFGL 62
Query 59 YLLITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFI 118
+LL +GV Q+ AF H + R++ FISGA S++L +L FR ++LLLA+WIGIG++
Sbjct 63 FLLFSGVMQLVAAFGTHTTTALRVMAFISGALSILLGLLCFRGATQSILLLALWIGIGWL 122
Query 119 FRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGT 178
FRG+ T++A SDP +P RGW IF+G+++ +AG+V++ SP ES +L ++ GIWLV +G
Sbjct 123 FRGITETIAAASDPAMPARGWHIFLGIVNALAGVVLIVSPLESAAVLMVLGGIWLVAVGA 182
Query 179 CEIASSFAIRKASQTL 194
EI ++F +R ++ L
Sbjct 183 VEIVTAFQVRSRAKKL 198
>gi|21222448|ref|NP_628227.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|13122138|emb|CAC32316.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length=226
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/163 (51%), Positives = 111/163 (69%), Gaps = 1/163 (0%)
Query 4 TAPMEPSPVVS-PLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLI 62
+ P EP P PL L W++ L +GI SLILGVLVL WPG S+L A + FG+YL+I
Sbjct 31 SGPQEPEPAFEGPLHLLSRAAWQTVLFTGIASLILGVLVLVWPGASLLAAGVLFGLYLVI 90
Query 63 TGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGV 122
+GV Q+A AF H R+L FISGA S++L + FR +VLLLA+WIGIG++FRGV
Sbjct 91 SGVLQLAAAFGTHRRTSLRVLAFISGAVSILLGLFCFRGPLQSVLLLALWIGIGWLFRGV 150
Query 123 ATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWIL 165
V+A DP +P RGW IF+G ++++AGIV++ SP ES +L
Sbjct 151 TQIVAAAHDPTMPARGWQIFLGAVTVVAGIVLIDSPVESATVL 193
>gi|297200770|ref|ZP_06918167.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|197712340|gb|EDY56374.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length=220
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/186 (48%), Positives = 125/186 (68%), Gaps = 2/186 (1%)
Query 8 EPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQ 67
EP P PL L W+ L +G+ SLILGVLVL WPG S+L A + FGVYLLI+GV Q
Sbjct 31 EP-PFEGPLHTLAKAAWQVVLLTGVASLILGVLVLVWPGASLLAAGVLFGVYLLISGVFQ 89
Query 68 VAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVS 127
+ AF H + R+L F+SG S++L + R ++LLLA+WIGIG++ RG+ ++
Sbjct 90 LVAAFGTHKTTALRVLAFVSGTLSILLGLFCLRGPMRSILLLALWIGIGWLIRGITQALA 149
Query 128 AISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAI 187
A SD +P RGW + +G ++ +AGIV++ SPFES+ +L LV GIWLVV+G EI ++ +I
Sbjct 150 AASDRSMPARGWQLLLGALTFVAGIVLIDSPFESVAVLTLVGGIWLVVVGVVEIVTALSI 209
Query 188 R-KASQ 192
R +A Q
Sbjct 210 RARARQ 215
>gi|333027015|ref|ZP_08455079.1| putative integral membrane protein [Streptomyces sp. Tu6071]
gi|332746867|gb|EGJ77308.1| putative integral membrane protein [Streptomyces sp. Tu6071]
Length=195
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/171 (50%), Positives = 121/171 (71%), Gaps = 0/171 (0%)
Query 14 SPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFS 73
PL RL W+ L +G+ S++LGVLVL WPG S+ VA + FGVYLL++GV Q+ A
Sbjct 15 DPLRRLARAAWRVVLLAGLASVLLGVLVLVWPGSSLRVAGVLFGVYLLVSGVVQLVAATG 74
Query 74 LHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPM 133
H +AG R+L F+SGA S++L + FR +VLLLA+WIGIG++FRG+ V+A+++P
Sbjct 75 THTAAGMRVLGFVSGALSVLLGLFCFRGATQSVLLLALWIGIGWLFRGLTQVVAALAEPA 134
Query 134 LPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASS 184
P RGW + +GV++ +AG+V++ SPF S W L LV GIWL+ +G EIA++
Sbjct 135 SPARGWQLVLGVLAALAGVVLVVSPFASAWALILVAGIWLLAVGVTEIATA 185
>gi|289770370|ref|ZP_06529748.1| integral membrane protein [Streptomyces lividans TK24]
gi|289700569|gb|EFD67998.1| integral membrane protein [Streptomyces lividans TK24]
Length=221
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/160 (52%), Positives = 109/160 (69%), Gaps = 1/160 (0%)
Query 7 MEPSPVVS-PLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGV 65
EP P PL L W++ L +GI SLILGVLVL WPG S+L A + FG+YL+I+GV
Sbjct 34 QEPEPAFEGPLHLLSRAAWQTVLFTGIASLILGVLVLVWPGASLLAAGVLFGLYLVISGV 93
Query 66 AQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATT 125
Q+A AF H R+L FISGA S++L + FR +VLLLA+WIGIG++FRGV
Sbjct 94 LQLAAAFGTHRRTSLRVLAFISGAVSILLGLFCFRGPLQSVLLLALWIGIGWLFRGVTQI 153
Query 126 VSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWIL 165
V+A DP +P RGW IF+G ++++AGIV++ SP ES +L
Sbjct 154 VAAAHDPTMPARGWQIFLGAVTVVAGIVLIDSPVESATVL 193
>gi|302519153|ref|ZP_07271495.1| integral membrane protein [Streptomyces sp. SPB78]
gi|302428048|gb|EFK99863.1| integral membrane protein [Streptomyces sp. SPB78]
Length=207
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/171 (50%), Positives = 120/171 (71%), Gaps = 0/171 (0%)
Query 14 SPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFS 73
PL RL W L +G+ S++LGVLVL WPG S+ VA + FGVYLL++GV Q+ A
Sbjct 27 DPLRRLARAAWWVVLLAGLASVLLGVLVLVWPGSSLRVAGVLFGVYLLVSGVVQLVAATG 86
Query 74 LHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPM 133
H +AG R+L F+SGA S++L + FR +VLLLA+WIGIG++FRG+ V+A+++P
Sbjct 87 THTAAGMRVLGFVSGALSVLLGLFCFRGATQSVLLLALWIGIGWLFRGLTQVVAALAEPA 146
Query 134 LPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASS 184
P RGW + +GV++ +AG+V++ SPF S W L LV GIWL+ +G EIA++
Sbjct 147 SPARGWQLVLGVLAALAGVVLVVSPFASAWALILVAGIWLLAVGVTEIATA 197
>gi|318060251|ref|ZP_07978974.1| hypothetical protein SSA3_20071 [Streptomyces sp. SA3_actG]
Length=183
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/171 (50%), Positives = 120/171 (71%), Gaps = 0/171 (0%)
Query 14 SPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFS 73
PL RL W L +G+ S++LGVLVL WPG S+ VA + FGVYLL++GV Q+ A
Sbjct 3 DPLRRLARAAWWVVLLAGLASVLLGVLVLVWPGSSLRVAGVLFGVYLLVSGVVQLVAATG 62
Query 74 LHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPM 133
H +AG R+L F+SGA S++L + FR +VLLLA+WIGIG++FRG+ V+A+++P
Sbjct 63 THTAAGMRVLGFVSGALSVLLGLFCFRGATQSVLLLALWIGIGWLFRGLTQVVAALAEPA 122
Query 134 LPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASS 184
P RGW + +GV++ +AG+V++ SPF S W L LV GIWL+ +G EIA++
Sbjct 123 SPARGWQLVLGVLAALAGVVLVVSPFASAWALILVAGIWLLAVGVTEIATA 173
>gi|311899529|dbj|BAJ31937.1| hypothetical protein KSE_61710 [Kitasatospora setae KM-6054]
Length=220
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/179 (45%), Positives = 115/179 (65%), Gaps = 0/179 (0%)
Query 15 PLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSL 74
P +L W++ LA G++SL LGV+VL WP ++ V + FG+YLL+ GV Q+ AF
Sbjct 37 PFQQLARIAWQAVLAGGLISLALGVVVLVWPKQTLWVIGVLFGLYLLVIGVVQLVGAFGT 96
Query 75 HVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPML 134
H S R+L F+SGA ++L +L FR +VLLLA+WIGIG++FRG+ + SDPM+
Sbjct 97 HASTALRVLAFVSGAICVLLGLLCFRSAAQSVLLLALWIGIGWLFRGITQLAAVASDPMM 156
Query 135 PGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQT 193
P RGW F G +S++AGIV+M P SI LA++ L+VIG EI ++ IR ++
Sbjct 157 PARGWQGFAGGLSVLAGIVLMVWPAHSITALAILAACGLLVIGVTEIVAALRIRSGAKQ 215
>gi|302539936|ref|ZP_07292278.1| integral membrane protein [Streptomyces hygroscopicus ATCC 53653]
gi|302457554|gb|EFL20647.1| integral membrane protein [Streptomyces himastatinicus ATCC 53653]
Length=204
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/165 (47%), Positives = 110/165 (67%), Gaps = 0/165 (0%)
Query 24 WKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGGRIL 83
W+ L +G+ +++LG+LVL WP ++ V FGVYLLI+G+ Q+ AF H R+L
Sbjct 15 WQVLLTAGLAAIVLGLLVLVWPAATLAVVGALFGVYLLISGIFQLVGAFGAHTPRSMRVL 74
Query 84 LFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFV 143
F+SGA S+ L +L FR +VLLLA+WIG ++ RGV TV+A+ D +P RGW IF+
Sbjct 75 SFVSGAVSVFLGLLCFRGPAQSVLLLALWIGFAWLLRGVMHTVTAVQDEGIPARGWQIFL 134
Query 144 GVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIR 188
GV+S +AGIV++ SPF SI L LV G+WL+V+G E+ +R
Sbjct 135 GVVSALAGIVLIVSPFGSIAALTLVTGVWLLVLGIIEVIHGIQLR 179
>gi|295838819|ref|ZP_06825752.1| integral membrane protein [Streptomyces sp. SPB74]
gi|197695365|gb|EDY42298.1| integral membrane protein [Streptomyces sp. SPB74]
Length=208
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/148 (49%), Positives = 104/148 (71%), Gaps = 0/148 (0%)
Query 42 LAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRH 101
L WPG S+ VA + FGVYLL++GV Q+ A H AG R+L F+SGA S++L + FR
Sbjct 56 LVWPGSSLRVAGVLFGVYLLVSGVVQLVAATGTHTDAGMRVLGFVSGALSVLLGLFCFRS 115
Query 102 FGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFES 161
+VLLLA+W+GIG++FRG+ V+A+++P P RGW +F+GV++ +AGIV++ SPF S
Sbjct 116 ATQSVLLLALWVGIGWLFRGLTQVVAALAEPASPARGWQLFLGVLAALAGIVLVVSPFAS 175
Query 162 IWILALVVGIWLVVIGTCEIASSFAIRK 189
W L LV GIWL+ +G EI ++ +R
Sbjct 176 AWALILVAGIWLLAVGLTEIGTALRLRH 203
>gi|294633385|ref|ZP_06711944.1| integral membrane protein [Streptomyces sp. e14]
gi|292831166|gb|EFF89516.1| integral membrane protein [Streptomyces sp. e14]
Length=200
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/171 (44%), Positives = 115/171 (68%), Gaps = 0/171 (0%)
Query 24 WKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGGRIL 83
W++ G+ S+ LGV+VL WPG ++ V + FGV+LL+TGV Q+A AF HV R L
Sbjct 9 WQALFTIGLASIALGVIVLIWPGETLRVVGVLFGVFLLVTGVFQLASAFGAHVPGHLRAL 68
Query 84 LFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFV 143
FI+GA ++L ++ FR +++LLLA+W+G G++ RG+ T +A S P +P RGW +F+
Sbjct 69 HFITGALCVLLGLICFRDTLESILLLALWLGFGWLLRGIMMTAAAGSSPGMPARGWQLFL 128
Query 144 GVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQTL 194
G+++L+AGIV++ SPF SI L LV GI +V+G E+ + +R A+ L
Sbjct 129 GILTLLAGIVLIVSPFGSIAALTLVTGIMAIVLGVTEVVHAIQLRIAAGRL 179
>gi|318079100|ref|ZP_07986432.1| hypothetical protein SSA3_20890 [Streptomyces sp. SA3_actF]
Length=169
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/157 (51%), Positives = 115/157 (74%), Gaps = 0/157 (0%)
Query 28 LASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGGRILLFIS 87
L +G+ S++LGVLVL WPG S+ VA + FGVYLL++GV Q+ A H +AG R+L F+S
Sbjct 3 LLAGLASVLLGVLVLVWPGSSLRVAGVLFGVYLLVSGVVQLVAATGTHTAAGMRVLGFVS 62
Query 88 GAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFVGVIS 147
GA S++L + FR +VLLLA+WIGIG++FRG+ V+A+++P P RGW + +GV++
Sbjct 63 GALSVLLGLFCFRGATQSVLLLALWIGIGWLFRGLTQVVAALAEPASPARGWQLVLGVLA 122
Query 148 LIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASS 184
+AG+V++ SPF S W L LV GIWL+ +G EIA++
Sbjct 123 ALAGVVLVVSPFASAWALILVAGIWLLAVGVTEIATA 159
>gi|297155579|gb|ADI05291.1| hypothetical protein SBI_02170 [Streptomyces bingchenggensis
BCW-1]
Length=257
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/165 (49%), Positives = 113/165 (69%), Gaps = 0/165 (0%)
Query 24 WKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGGRIL 83
W+ + +GI+++ LGV+VLAWPG ++ V FG YLLITG+ Q+A AF HV R+L
Sbjct 67 WQVMVTTGIIAVALGVMVLAWPGATLAVLGALFGAYLLITGIFQLAGAFGAHVPTHLRVL 126
Query 84 LFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFV 143
FISGA +++L +L FR ++LLLA+WIG ++ RGV T +AIS LP RGW IF
Sbjct 127 SFISGALAVLLGLLCFRGPAQSILLLALWIGFAWLIRGVMVTAAAISHEGLPARGWQIFF 186
Query 144 GVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIR 188
GVIS++AGI+++ +PF SI LA+V GIWL+ +G E+ +R
Sbjct 187 GVISMLAGIILIVAPFGSITALAVVAGIWLLALGVIEVFHGVQLR 231
>gi|345011466|ref|YP_004813820.1| hypothetical protein Strvi_3878 [Streptomyces violaceusniger
Tu 4113]
gi|344037815|gb|AEM83540.1| protein of unknown function DUF308 membrane [Streptomyces violaceusniger
Tu 4113]
Length=237
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/181 (40%), Positives = 117/181 (65%), Gaps = 0/181 (0%)
Query 8 EPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQ 67
E +P + L W+ +A+G++++ LG++VL WPG +++V FG YLLI+G+ Q
Sbjct 29 EDTPYATLQNMLSDTAWQILVATGLVAIALGIMVLVWPGATLVVVGALFGAYLLISGIFQ 88
Query 68 VAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVS 127
+ AF H+ R+L F++GA S++L +L FR ++LLLA+WIG ++ RGV T +
Sbjct 89 LVGAFGAHIPRHLRVLSFVTGALSVLLGLLCFRGPAQSILLLALWIGFAWLLRGVMQTAT 148
Query 128 AISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAI 187
AIS +P RGW +F+GV++++ GI+++ +PF SI L +V GIWL+ +G EI +
Sbjct 149 AISGEGMPARGWHLFLGVLTILGGIILIVAPFGSITALTVVAGIWLLALGIIEIMHGIQL 208
Query 188 R 188
R
Sbjct 209 R 209
>gi|326381705|ref|ZP_08203399.1| hypothetical protein SCNU_02120 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199952|gb|EGD57132.1| hypothetical protein SCNU_02120 [Gordonia neofelifaecis NRRL
B-59395]
Length=195
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/191 (44%), Positives = 125/191 (66%), Gaps = 3/191 (1%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
M P++ + + L W+S L GI S ILG++VL WPG ++LV ++ FG+YL
Sbjct 1 MVINDPLDEAAR-DAVKELASRTWQSLLGIGIASAILGIIVLIWPGATLLVVSILFGIYL 59
Query 61 LITGVAQVAFAFSLHVSAG-GRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIF 119
LI+G+ Q+A F + S G R+L F++GA S++LA +AFR+ AV+LLAIW+GI +IF
Sbjct 60 LISGIFQIAATFGVRESHGWWRVLSFVTGALSILLAFVAFRNIESAVILLAIWVGISWIF 119
Query 120 RGVAT-TVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGT 178
RGVA +V S LPGRGW IF+ +++++AG +++ P S+ L +V GI LVV+G
Sbjct 120 RGVAELSVFMDSASGLPGRGWGIFLAIVTVVAGGILIIWPISSVATLTVVAGIMLVVVGV 179
Query 179 CEIASSFAIRK 189
EI +FA+R
Sbjct 180 VEIIEAFALRS 190
>gi|291442207|ref|ZP_06581597.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291345102|gb|EFE72058.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length=225
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/185 (41%), Positives = 115/185 (63%), Gaps = 1/185 (0%)
Query 4 TAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLIT 63
T P + +P+ L L W+ +G+ ++ LGV+V AWPG ++ V + FG+YLL T
Sbjct 16 TDPQD-APLTEGLGALANMGWQILFTTGLATIALGVVVFAWPGETLRVVGVLFGIYLLAT 74
Query 64 GVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVA 123
GV Q+A AF HV R+L F++GA S++L ++ FR ++ LLA+WIG ++ RG+
Sbjct 75 GVFQLAAAFGTHVPRHLRVLHFLTGALSVLLGLICFRGTLQSIFLLALWIGFSWLLRGIM 134
Query 124 TTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIAS 183
T +A S +P RGW +F G+IS +AGIV++ SPF SI L L VG+ +V+G E+
Sbjct 135 VTAAAASAEGMPARGWQLFYGIISTLAGIVLIVSPFTSIAALTLAVGVMALVLGVVEVFQ 194
Query 184 SFAIR 188
+ +R
Sbjct 195 AIRMR 199
>gi|256397291|ref|YP_003118855.1| hypothetical protein Caci_8191 [Catenulispora acidiphila DSM
44928]
gi|256363517|gb|ACU77014.1| protein of unknown function DUF308 membrane [Catenulispora acidiphila
DSM 44928]
Length=211
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/187 (41%), Positives = 119/187 (64%), Gaps = 2/187 (1%)
Query 8 EPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQ 67
+ V PL L W++ + G+ ++ +GV V+ WP ++LV + FG+YLLI+GV +
Sbjct 13 DRGDVDYPLRMLGQAAWQALMVLGLAAIAIGVCVVVWPDRTLLVLGVLFGIYLLISGVME 72
Query 68 VAFAFSLHVSAGGRILLFISGAASLILAVLAFRH-FGDAVLLLAIWIGIGFIFRGVATTV 126
+ AF HVSAG R+L I GA S++L + FR+ ++VLLL++WIGIGF+ G+AT
Sbjct 73 IIAAFGEHVSAGMRVLNVIVGALSILLGLFCFRNSLHNSVLLLSLWIGIGFLMWGIATIA 132
Query 127 SAISDPM-LPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSF 185
+A S P + GRGW+ F G ++++ GI+V++ P SI LA+ GIWL+ +G E+ +F
Sbjct 133 TAASAPSGVVGRGWAFFAGFVTMLGGIIVISWPIGSIVTLAVFTGIWLIAVGLIEVIHAF 192
Query 186 AIRKASQ 192
+R +
Sbjct 193 TLRSKVK 199
>gi|302550443|ref|ZP_07302785.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302468061|gb|EFL31154.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length=226
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/159 (41%), Positives = 100/159 (63%), Gaps = 1/159 (0%)
Query 4 TAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLIT 63
T P + +P+ L L W+ L +G+ ++ LG+++ AWP ++ V + FG+YLL T
Sbjct 16 TEPQD-APLTEGLGALANMGWQILLTTGLATIALGIVIFAWPDETLRVVGVLFGIYLLAT 74
Query 64 GVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVA 123
GV Q+A AF HV R+L F++GA S++L ++ FR ++ LLA+WIG ++ RG+
Sbjct 75 GVFQLAAAFGTHVPRHLRVLHFLTGALSVLLGLICFRGTVQSIFLLALWIGFSWLLRGIT 134
Query 124 TTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESI 162
T +A S P RGW +F G+IS +AGIV++ SPF SI
Sbjct 135 VTAAAASAEDTPARGWQLFYGIISTLAGIVLIVSPFTSI 173
>gi|296138669|ref|YP_003645912.1| hypothetical protein Tpau_0940 [Tsukamurella paurometabola DSM
20162]
gi|296026803|gb|ADG77573.1| protein of unknown function DUF308 membrane [Tsukamurella paurometabola
DSM 20162]
Length=192
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/182 (37%), Positives = 111/182 (61%), Gaps = 4/182 (2%)
Query 14 SPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFS 73
+PL + + W++TL GI+S+I+G ++ WPG + LV + FG++L++TG+ QV
Sbjct 5 NPLQQGIKSTWQTTLFLGIVSIIMGAIIAVWPGPTTLVVGVLFGIFLILTGIFQVIAG-- 62
Query 74 LHVSAGGRILLFISGAASLILAVLAFR-HFGDAVLLLAIWIGIGFIFRGVATTVSAISDP 132
L A R+L ISGA SLIL FR +++ +L IWIGI +IF G+ + ++
Sbjct 63 LIGEAQHRVLAVISGALSLILGAFCFRDDIYNSIAVLGIWIGISWIFFGITSITIGFANK 122
Query 133 MLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQ 192
LP R W + +G+++ + G V+++ P+E + IL L+ GIW + IG E+ S+F +R A+
Sbjct 123 SLPNRVWVVILGILTAVGGFVLVSYPYE-VQILVLISGIWAIAIGIVEVISAFQLRSAAN 181
Query 193 TL 194
Sbjct 182 KF 183
>gi|296138319|ref|YP_003645562.1| hypothetical protein Tpau_0585 [Tsukamurella paurometabola DSM
20162]
gi|296026453|gb|ADG77223.1| protein of unknown function DUF308 membrane [Tsukamurella paurometabola
DSM 20162]
Length=228
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/183 (39%), Positives = 108/183 (60%), Gaps = 3/183 (1%)
Query 14 SPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFS 73
+ W S LA G LS++ GV+VL WPG + LVA + FG++L++ G+ QV
Sbjct 9 EDIETKTKQAWWSLLALGALSILFGVVVLVWPGPTTLVAGIMFGIFLIVGGIVQVVAGII 68
Query 74 LHVSAGGRILLFISGAASLILAVLAFRH-FGDAVLLLAIWIGIGFIFRGVATTVSAISDP 132
R L ISGA SL+L FR ++V +L I+IGIG+IF GV + I+
Sbjct 69 GDTE--NRWLSVISGALSLVLGAFCFRDDIANSVAVLGIFIGIGWIFGGVWQITAGIAGK 126
Query 133 MLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKASQ 192
LP R W++ G+++LI G V++ASP++S+ IL +V GI+ + IG EI +F +R ++
Sbjct 127 HLPNRTWTVIAGILTLIGGFVLIASPWDSMIILMVVTGIFAIAIGIVEIIGAFRLRSTAK 186
Query 193 TLG 195
+G
Sbjct 187 QVG 189
>gi|296138082|ref|YP_003645325.1| hypothetical protein Tpau_0343 [Tsukamurella paurometabola DSM
20162]
gi|296026216|gb|ADG76986.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=214
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 117/200 (59%), Gaps = 10/200 (5%)
Query 4 TAPMEPSPVVSPLPRL-------LPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAF 56
+AP E P S + + + +W+S L GI++++LG ++LAWP ++ V + F
Sbjct 10 SAPQEQPPRHSLVDEVRGYASDVVTKVWQSVLGIGIVAIVLGAVILAWPSPTLRVVGVLF 69
Query 57 GVYLLITGVAQVAFAFSLHVSAGG--RILLFISGAASLILAVLAFRHFGDAVLLLAIWIG 114
+YLL+ G+ Q+ F S R L FISGA S++L+VLAFR GD++++LAIWIG
Sbjct 70 AIYLLLIGILQLYTVFGPIKSESNWWRFLTFISGALSIVLSVLAFRSEGDSLVMLAIWIG 129
Query 115 IGFIFRGVATTVSAISDPM-LPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWL 173
+G++ +G+ + P P R SIF ++ IAG++V+ P+++I L GI L
Sbjct 130 VGWLIQGIVGFAVGLDLPNGTPHRILSIFASILFTIAGVIVVIYPYDAIAPLTYGTGIAL 189
Query 174 VVIGTCEIASSFAIRKASQT 193
++IG ++ +F IR ++
Sbjct 190 IIIGLVQVVHAFQIRSSANK 209
>gi|309811578|ref|ZP_07705357.1| putative membrane protein [Dermacoccus sp. Ellin185]
gi|308434379|gb|EFP58232.1| putative membrane protein [Dermacoccus sp. Ellin185]
Length=189
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/188 (35%), Positives = 109/188 (58%), Gaps = 1/188 (0%)
Query 7 MEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVA 66
+E + V +PL RL H WK+ G +S+I+G++ L WPG + +V + FG++LL++G+
Sbjct 3 LEGTIVETPLHRLASHAWKAIAGVGAVSIIVGLIALIWPGPTTVVIGVLFGIFLLLSGLM 62
Query 67 QVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTV 126
+ ++ + R + A S++L +L FR +V LL +WIGIG+I +
Sbjct 63 GLFVGLAVPMPGFVRAASLLVSALSVVLGLLCFRSETHSVTLLGLWIGIGWIMNSMTMLA 122
Query 127 SAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFA 186
+S GRGW I VI ++AGIV++ASP S+ L + G++L+V G EI +
Sbjct 123 RGLSTKG-QGRGWVIVSSVIGILAGIVLVASPISSMATLVWIAGVFLLVTGIVEIIRAMQ 181
Query 187 IRKASQTL 194
+R+ +++L
Sbjct 182 LRRRARSL 189
>gi|229489652|ref|ZP_04383515.1| integral membrane protein [Rhodococcus erythropolis SK121]
gi|229323749|gb|EEN89507.1| integral membrane protein [Rhodococcus erythropolis SK121]
Length=191
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/153 (37%), Positives = 91/153 (60%), Gaps = 2/153 (1%)
Query 41 VLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGG-RILLFISGAASLILAVLAF 99
VLAWP ++ V A+ + L G+ Q+ +F+ ++GG R L+ ISGA +++L L
Sbjct 39 VLAWPDATLFVVAVVIAIQLFGFGIVQIIRSFADVTASGGTRTLVAISGALAVLLGFLVL 98
Query 100 RHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPF 159
R V+L+A+ IG ++FRGV V A S + RG SI +GVIS++AG +V+ P
Sbjct 99 RSPLQTVVLIALVIGAWWVFRGVLDLVDAASGHTV-DRGLSIVLGVISIVAGAIVLLQPE 157
Query 160 ESIWILALVVGIWLVVIGTCEIASSFAIRKASQ 192
S+ + +VVG+W+V+ G + + +RK +Q
Sbjct 158 LSLDVFRIVVGVWMVLYGIIIVVTPLVLRKIAQ 190
>gi|29833877|ref|NP_828511.1| integral membrane protein [Streptomyces avermitilis MA-4680]
gi|29611002|dbj|BAC75046.1| putative integral membrane protein [Streptomyces avermitilis
MA-4680]
Length=221
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/188 (33%), Positives = 101/188 (54%), Gaps = 10/188 (5%)
Query 3 HTAPMEPSPVVSPLPR---------LLPHLWKSTLASGILSLILGVLVLAWPGISILVAA 53
HT P + S +P P L W L S + +L+ GVLVL WP ++ + A
Sbjct 10 HTGPEQMSDRAAPGPSDGDPAEVLAALGRSWTWILGSAVATLVPGVLVLVWPDETLHILA 69
Query 54 MAFGVYLLITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWI 113
+ G+YLL+ G + AFS G R+ + A ++ VL R+ + L++ +
Sbjct 70 VLIGLYLLVIGGFRFVAAFSRD-EHGDRLPGVLLAVAFVLAGVLCLRNPLQTIAGLSLIV 128
Query 114 GIGFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWL 173
GI ++ G+ T +AI+ LP RG+ + V VI+++AGIVV+A P ES L ++G+W+
Sbjct 129 GIVWLVSGILTLYTAIAAKDLPHRGFVLGVAVIAIVAGIVVLALPTESARALTRLLGLWM 188
Query 174 VVIGTCEI 181
V++G E+
Sbjct 189 VLLGLAEV 196
>gi|226305620|ref|YP_002765580.1| hypothetical protein RER_21330 [Rhodococcus erythropolis PR4]
gi|226184737|dbj|BAH32841.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=191
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/153 (36%), Positives = 91/153 (60%), Gaps = 2/153 (1%)
Query 41 VLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLHVSAGG-RILLFISGAASLILAVLAF 99
VLAWP ++ V A+ + L G+ Q+ +F+ ++GG R L+ ISGA +++L L
Sbjct 39 VLAWPDATLFVVAVVIAIQLFGFGIVQIIRSFADVTASGGTRTLVAISGALAVLLGFLVL 98
Query 100 RHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPF 159
R V+++A+ IG ++FRGV V A S + RG SI +GVIS++AG +V+ P
Sbjct 99 RSPLQTVVVIALVIGAWWVFRGVLDLVDAASGHTV-DRGLSIVLGVISIVAGAIVLLQPE 157
Query 160 ESIWILALVVGIWLVVIGTCEIASSFAIRKASQ 192
S+ + +VVG+W+V+ G + + +RK +Q
Sbjct 158 LSLDVFRIVVGVWMVLYGIIIVVTPLVLRKIAQ 190
>gi|317508064|ref|ZP_07965749.1| hypothetical protein HMPREF9336_02121 [Segniliparus rugosus ATCC
BAA-974]
gi|316253632|gb|EFV13017.1| hypothetical protein HMPREF9336_02121 [Segniliparus rugosus ATCC
BAA-974]
Length=194
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/195 (35%), Positives = 99/195 (51%), Gaps = 3/195 (1%)
Query 1 MCHTAPMEPSPVVSPLPRLLPHLWKSTLASGILSLILGVLVLAWPGISILVAAMAFGVYL 60
M T S + + R+L + W + L SGI+++I GVL +AWPGI++ VAA+ FG+ +
Sbjct 1 MNATPRSTGSSFLDEIGRVLRY-WPAVLISGIVTVIAGVLAIAWPGITVFVAAILFGLGI 59
Query 61 LITGVAQVAFAFSLHVSAGGRILLFISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFR 120
L GV A AF+ GR + + A S++ VL G VL LA + F+
Sbjct 60 LFQGVLFSATAFAAKPGTPGRAWIGVWAALSILAGVLTLVFPGSGVLALAYLLIFWFLVN 119
Query 121 GVATTVSAISDPMLPGRGWSIFVGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCE 180
V V A SD R W +G + LI I ++ +I +AL+VG L++ GT E
Sbjct 120 AVNNIVRASSDK--EHRVWFGVLGALELIVAIWLLFDLAAAIDTIALIVGFGLLLRGTAE 177
Query 181 IASSFAIRKASQTLG 195
IA +F +R L
Sbjct 178 IALAFRLRHVGNVLN 192
>gi|343924479|ref|ZP_08764028.1| hypothetical protein GOALK_016_00770 [Gordonia alkanivorans NBRC
16433]
gi|343765623|dbj|GAA10954.1| hypothetical protein GOALK_016_00770 [Gordonia alkanivorans NBRC
16433]
Length=162
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/140 (41%), Positives = 88/140 (63%), Gaps = 1/140 (0%)
Query 36 ILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAFSLH-VSAGGRILLFISGAASLIL 94
+LG++ + WPG +I+V A+ F + L+I G+ ++ AF+ +S G R LL + G L+
Sbjct 1 MLGIVAIIWPGPTIVVVAILFAISLIIAGIFRIYQAFAASFLSTGVRALLGVVGVIVLLA 60
Query 95 AVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPGRGWSIFVGVISLIAGIVV 154
++A GDAV LLA++IGIG+IF+GVA A++ + I G+IS+IAGIV+
Sbjct 61 GIIALFSPGDAVWLLAVFIGIGWIFQGVADLYGAVTKSGHSPTWFLILSGIISVIAGIVM 120
Query 155 MASPFESIWILALVVGIWLV 174
+ P S+ +LA V GI LV
Sbjct 121 IILPVFSLQVLAWVGGIMLV 140
Lambda K H
0.330 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 202202242956
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40