BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1636
Length=146
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608774|ref|NP_216152.1| hypothetical protein Rv1636 [Mycoba... 288 2e-76
gi|50513792|pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1... 283 9e-75
gi|183982454|ref|YP_001850745.1| iron-regulated protein [Mycobac... 273 7e-72
gi|240168017|ref|ZP_04746676.1| hypothetical protein MkanA1_0178... 273 8e-72
gi|118617259|ref|YP_905591.1| iron-regulated protein [Mycobacter... 270 4e-71
gi|296164515|ref|ZP_06847086.1| universal stress protein [Mycoba... 263 5e-69
gi|15827725|ref|NP_301988.1| hypothetical protein ML1390 [Mycoba... 261 2e-68
gi|254775589|ref|ZP_05217105.1| hypothetical protein MaviaA2_131... 258 2e-67
gi|41407437|ref|NP_960273.1| hypothetical protein MAP1339 [Mycob... 256 6e-67
gi|342860786|ref|ZP_08717436.1| hypothetical protein MCOL_17983 ... 256 8e-67
gi|254820348|ref|ZP_05225349.1| hypothetical protein MintA_10486... 251 2e-65
gi|118466967|ref|YP_882321.1| universal stress protein family pr... 228 2e-58
gi|118472903|ref|YP_888104.1| universal stress protein family pr... 228 2e-58
gi|108799958|ref|YP_640155.1| hypothetical protein Mmcs_2992 [My... 224 2e-57
gi|145224135|ref|YP_001134813.1| UspA domain-containing protein ... 224 4e-57
gi|120404316|ref|YP_954145.1| UspA domain-containing protein [My... 224 4e-57
gi|333990452|ref|YP_004523066.1| iron-regulated protein [Mycobac... 214 4e-54
gi|343926127|ref|ZP_08765637.1| hypothetical protein GOALK_055_0... 189 1e-46
gi|169629398|ref|YP_001703047.1| hypothetical protein MAB_2312 [... 185 2e-45
gi|226306793|ref|YP_002766753.1| hypothetical protein RER_33060 ... 181 4e-44
gi|229492721|ref|ZP_04386522.1| UspA domain protein [Rhodococcus... 180 6e-44
gi|333919163|ref|YP_004492744.1| UspA domain-containing protein ... 173 7e-42
gi|326382690|ref|ZP_08204381.1| UspA domain-containing protein [... 171 3e-41
gi|262202762|ref|YP_003273970.1| UspA domain-containing protein ... 171 4e-41
gi|111017988|ref|YP_700960.1| hypothetical protein RHA1_ro00974 ... 166 1e-39
gi|296140128|ref|YP_003647371.1| UspA domain-containing protein ... 166 1e-39
gi|226360117|ref|YP_002777895.1| Usp family protein [Rhodococcus... 165 2e-39
gi|342858508|ref|ZP_08715163.1| UspA domain-containing protein [... 162 2e-38
gi|254820785|ref|ZP_05225786.1| UspA domain-containing protein [... 160 5e-38
gi|54023873|ref|YP_118115.1| hypothetical protein nfa19050 [Noca... 159 9e-38
gi|312139893|ref|YP_004007229.1| universal stress family protein... 156 8e-37
gi|296393563|ref|YP_003658447.1| UspA domain-containing protein ... 155 2e-36
gi|118468602|ref|YP_887617.1| universal stress protein family pr... 150 6e-35
gi|317506719|ref|ZP_07964502.1| universal stress protein family ... 150 6e-35
gi|289569682|ref|ZP_06449909.1| iron-regulated conserved hypothe... 148 2e-34
gi|325002904|ref|ZP_08124016.1| universal stress protein [Pseudo... 144 4e-33
gi|319949849|ref|ZP_08023862.1| hypothetical protein ES5_10187 [... 142 1e-32
gi|271967200|ref|YP_003341396.1| hypothetical protein Sros_5918 ... 142 2e-32
gi|345002939|ref|YP_004805793.1| UspA domain-containing protein ... 139 2e-31
gi|291453043|ref|ZP_06592433.1| universal stress protein UspA [S... 138 2e-31
gi|257056834|ref|YP_003134666.1| universal stress protein UspA-l... 135 1e-30
gi|227488125|ref|ZP_03918441.1| possible universal stress protei... 135 2e-30
gi|302524848|ref|ZP_07277190.1| universal stress protein UspA [S... 135 2e-30
gi|269126525|ref|YP_003299895.1| UspA domain-containing protein ... 133 9e-30
gi|300783496|ref|YP_003763787.1| universal stress protein [Amyco... 131 3e-29
gi|284992546|ref|YP_003411100.1| UspA domain-containing protein ... 127 4e-28
gi|337290617|ref|YP_004629638.1| hypothetical protein CULC22_010... 127 4e-28
gi|302330625|gb|ADL20819.1| Stress related protein [Corynebacter... 127 5e-28
gi|300858356|ref|YP_003783339.1| hypothetical protein cpfrc_0093... 127 5e-28
gi|38233745|ref|NP_939512.1| putative stress-like protein [Coryn... 127 6e-28
>gi|15608774|ref|NP_216152.1| hypothetical protein Rv1636 [Mycobacterium tuberculosis H37Rv]
gi|15841091|ref|NP_336128.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31792822|ref|NP_855315.1| hypothetical protein Mb1662 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=146
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV
Sbjct 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI
Sbjct 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
>gi|50513792|pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
gi|50513793|pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
gi|50513794|pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
gi|50513795|pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
gi|50513796|pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
gi|50513797|pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length=163
Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 144/146 (99%), Positives = 145/146 (99%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
+SAYKTVVVGTDGSDSS RAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV
Sbjct 14 LSAYKTVVVGTDGSDSSXRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 73
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI
Sbjct 74 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 133
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 134 AGRLLGSVPANVSRRAKVDVLIVHTT 159
>gi|183982454|ref|YP_001850745.1| iron-regulated protein [Mycobacterium marinum M]
gi|183175780|gb|ACC40890.1| iron-regulated conserved protein [Mycobacterium marinum M]
Length=146
Score = 273 bits (697), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/146 (94%), Positives = 143/146 (98%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY TVVVGTDGSDSS+RAVDRAAQIAGADAKLIIASAYLPQHEDARAAD+L++ESYKV
Sbjct 1 MGAYGTVVVGTDGSDSSLRAVDRAAQIAGADAKLIIASAYLPQHEDARAADVLREESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
TGTAPIYEILHDAKERAHNAGAKNVEERP+VGAPVDALVNLA+E KADLLVVGNVGLSTI
Sbjct 61 TGTAPIYEILHDAKERAHNAGAKNVEERPVVGAPVDALVNLAEEVKADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
>gi|240168017|ref|ZP_04746676.1| hypothetical protein MkanA1_01785 [Mycobacterium kansasii ATCC
12478]
Length=146
Score = 273 bits (697), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/146 (95%), Positives = 142/146 (98%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSSMRAVDRAAQIAGADA LIIASAYLPQHEDARAAD+LKDESYKV
Sbjct 1 MGAYRTVVVGTDGSDSSMRAVDRAAQIAGADATLIIASAYLPQHEDARAADVLKDESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
TGTAPIYEILHDAKERAHNAGAKNVEER IVGAPVDALV+LA+E KADLLVVGNVGLSTI
Sbjct 61 TGTAPIYEILHDAKERAHNAGAKNVEERAIVGAPVDALVSLAEEAKADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
>gi|118617259|ref|YP_905591.1| iron-regulated protein [Mycobacterium ulcerans Agy99]
gi|118569369|gb|ABL04120.1| iron-regulated conserved protein [Mycobacterium ulcerans Agy99]
Length=146
Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/146 (94%), Positives = 142/146 (98%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY TVVVGTDGSDSS+RAVDRAAQIAGADAKLIIASAYLPQHEDARAAD+L++E YKV
Sbjct 1 MGAYGTVVVGTDGSDSSLRAVDRAAQIAGADAKLIIASAYLPQHEDARAADVLREERYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
TGTAPIYEILHDAKERAHNAGAKNVEERP+VGAPVDALVNLA+E KADLLVVGNVGLSTI
Sbjct 61 TGTAPIYEILHDAKERAHNAGAKNVEERPVVGAPVDALVNLAEEVKADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
>gi|296164515|ref|ZP_06847086.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900115|gb|EFG79550.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=147
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/146 (90%), Positives = 140/146 (96%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSSMRAVD+AAQIAG DAKLI+ASAYLPQHED+RAAD+L+DESYKV
Sbjct 1 MGAYRTVVVGTDGSDSSMRAVDKAAQIAGPDAKLIVASAYLPQHEDSRAADVLRDESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
+GTAPIY IL DAKERAH AGAKNVEERPIVGAPVDALV LA++EKADLLVVGNVGLSTI
Sbjct 61 SGTAPIYAILQDAKERAHKAGAKNVEERPIVGAPVDALVKLAEDEKADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
>gi|15827725|ref|NP_301988.1| hypothetical protein ML1390 [Mycobacterium leprae TN]
gi|221230202|ref|YP_002503618.1| hypothetical protein MLBr_01390 [Mycobacterium leprae Br4923]
gi|13093276|emb|CAC31771.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933309|emb|CAR71485.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=147
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/146 (90%), Positives = 140/146 (96%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSS+RAVDRA +IAG+DAKLIIASAYLPQH++ARA DILKDESYKV
Sbjct 1 MGAYQTVVVGTDGSDSSLRAVDRAGKIAGSDAKLIIASAYLPQHDNARAFDILKDESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
TGTAPIYEILHDAKERAH AGAKNVEERP+VGAPVDALVNLA++ ADLLVVGNVGLSTI
Sbjct 61 TGTAPIYEILHDAKERAHAAGAKNVEERPVVGAPVDALVNLAEKTNADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAK+DVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKIDVLIVHTT 146
>gi|254775589|ref|ZP_05217105.1| hypothetical protein MaviaA2_13103 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=147
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/146 (89%), Positives = 139/146 (96%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSSMRAV+RAAQIAG DAKLI+ASAYLPQHEDARAAD L++ESYKV
Sbjct 1 MGAYRTVVVGTDGSDSSMRAVERAAQIAGPDAKLIVASAYLPQHEDARAADALREESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
+GTAPIY IL DAKERAH AGAKNV+ERPIVGAPVDALV+LA+EE+ADLLVVGNVGLSTI
Sbjct 61 SGTAPIYAILRDAKERAHQAGAKNVDERPIVGAPVDALVHLAEEEQADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAK DVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKTDVLIVHTT 146
>gi|41407437|ref|NP_960273.1| hypothetical protein MAP1339 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395789|gb|AAS03656.1| hypothetical protein MAP_1339 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457790|gb|EGO36784.1| universal stress protein UspA-like protein [Mycobacterium avium
subsp. paratuberculosis S397]
Length=147
Score = 256 bits (655), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 128/146 (88%), Positives = 138/146 (95%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSSMRAV+RAAQIAG DAKLI+ASAYLPQHEDARAAD L++ESYKV
Sbjct 1 MGAYRTVVVGTDGSDSSMRAVERAAQIAGPDAKLIVASAYLPQHEDARAADALREESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
+GTAPIY IL DAKERAH AGAKNV+ERPIVG PVDALV+LA+EE+ADLLVVGNVGLSTI
Sbjct 61 SGTAPIYAILRDAKERAHQAGAKNVDERPIVGVPVDALVHLAEEEQADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAK DVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKTDVLIVHTT 146
>gi|342860786|ref|ZP_08717436.1| hypothetical protein MCOL_17983 [Mycobacterium colombiense CECT
3035]
gi|342131810|gb|EGT85067.1| hypothetical protein MCOL_17983 [Mycobacterium colombiense CECT
3035]
Length=147
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 127/146 (87%), Positives = 140/146 (96%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSSMRAV++AAQIAGADAKLI+ASAYLPQHEDARAAD L+DESYKV
Sbjct 1 MGAYRTVVVGTDGSDSSMRAVEKAAQIAGADAKLIVASAYLPQHEDARAADALRDESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
+GTAPIY IL DAK+RAH AGA+N++ERPIVGAPVDALV+LA+EE+ADLLVVGNVGLSTI
Sbjct 61 SGTAPIYAILRDAKDRAHAAGAQNIDERPIVGAPVDALVHLAEEEQADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAK DVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKTDVLIVHTT 146
>gi|254820348|ref|ZP_05225349.1| hypothetical protein MintA_10486 [Mycobacterium intracellulare
ATCC 13950]
Length=147
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/146 (86%), Positives = 138/146 (95%), Gaps = 0/146 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
M AY+TVVVGTDGSDSSMRAV++AAQIAG DAKLI+ASAYLPQHEDARAAD L+DESYKV
Sbjct 1 MGAYRTVVVGTDGSDSSMRAVEKAAQIAGPDAKLIVASAYLPQHEDARAADALRDESYKV 60
Query 61 TGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTI 120
+GTAPIY IL DAK+RA AGA+N++ERPIVGAPVDALV+LA+EE+ADLLVVGNVGLSTI
Sbjct 61 SGTAPIYAILRDAKDRAQAAGAQNIDERPIVGAPVDALVHLAEEEQADLLVVGNVGLSTI 120
Query 121 AGRLLGSVPANVSRRAKVDVLIVHTT 146
AGRLLGSVPANVSRRAK DVLIVHTT
Sbjct 121 AGRLLGSVPANVSRRAKTDVLIVHTT 146
>gi|118466967|ref|YP_882321.1| universal stress protein family protein, putative [Mycobacterium
avium 104]
gi|118168254|gb|ABK69151.1| universal stress protein family protein, putative [Mycobacterium
avium 104]
Length=130
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/129 (89%), Positives = 123/129 (96%), Gaps = 0/129 (0%)
Query 18 MRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA 77
MRAV+RAAQIAG DAKLI+ASAYLPQHEDARAAD L++ESYKV+GTAPIY IL DAKERA
Sbjct 1 MRAVERAAQIAGPDAKLIVASAYLPQHEDARAADALREESYKVSGTAPIYAILRDAKERA 60
Query 78 HNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAK 137
H AGAKNV+ERPIVGAPVDALV+LA+EE+ADLLVVGNVGLSTIAGRLLGSVPANVSRRAK
Sbjct 61 HQAGAKNVDERPIVGAPVDALVHLAEEEQADLLVVGNVGLSTIAGRLLGSVPANVSRRAK 120
Query 138 VDVLIVHTT 146
DVLIVHTT
Sbjct 121 TDVLIVHTT 129
>gi|118472903|ref|YP_888104.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118174190|gb|ABK75086.1| universal stress protein family protein, putative [Mycobacterium
smegmatis str. MC2 155]
Length=147
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/147 (79%), Positives = 130/147 (89%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYK 59
MSAY+TVVVGTDGSDSS+RAVDRA QIA A +AKLIIA+AY PQ ED+RAAD+LKDE YK
Sbjct 1 MSAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPQSEDSRAADVLKDEGYK 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
+ G APIY IL +A +RA AGA ++EERP+VGAPVDALV LADE KADLLVVGNVGLST
Sbjct 61 MAGNAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLST 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPANV+RR+K DVLIVHT+
Sbjct 121 IAGRLLGSVPANVARRSKTDVLIVHTS 147
>gi|108799958|ref|YP_640155.1| hypothetical protein Mmcs_2992 [Mycobacterium sp. MCS]
gi|119869068|ref|YP_939020.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|126435586|ref|YP_001071277.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|108770377|gb|ABG09099.1| UspA [Mycobacterium sp. MCS]
gi|119695157|gb|ABL92230.1| UspA domain protein [Mycobacterium sp. KMS]
gi|126235386|gb|ABN98786.1| UspA domain protein [Mycobacterium sp. JLS]
Length=148
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/147 (77%), Positives = 130/147 (89%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIA-GADAKLIIASAYLPQHEDARAADILKDESYK 59
MSAY+TVVVGTDGSDSS+RAVDRA QIA G+ AKLI+ +AY PQ ED RAAD+LKDE YK
Sbjct 1 MSAYRTVVVGTDGSDSSLRAVDRAGQIAAGSGAKLIVTTAYFPQSEDQRAADVLKDEGYK 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
++G APIY IL +A++RA AGA+N+EE+ +VGAPVDALV LA+E KADLLVVGNVGLST
Sbjct 61 MSGNAPIYAILREARDRAKAAGAENIEEKAVVGAPVDALVELAEEVKADLLVVGNVGLST 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPANV+RR+K DVLIVHTT
Sbjct 121 IAGRLLGSVPANVARRSKTDVLIVHTT 147
>gi|145224135|ref|YP_001134813.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315444471|ref|YP_004077350.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|145216621|gb|ABP46025.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
gi|315262774|gb|ADT99515.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=147
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/147 (77%), Positives = 130/147 (89%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIA-GADAKLIIASAYLPQHEDARAADILKDESYK 59
M+ Y+TVVVGTDGSDSS+RAVDRA QIA GA A+LI+A+AY PQ EDARAAD+LKDE YK
Sbjct 1 MTGYQTVVVGTDGSDSSLRAVDRAGQIAAGAHARLIVATAYFPQSEDARAADVLKDEGYK 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
++G APIY IL +AKERA AGA+N+EE+ +VGAPVDALV LA+E ADLLVVGNVGLST
Sbjct 61 MSGNAPIYAILREAKERAKAAGAENIEEKAVVGAPVDALVELAEEVNADLLVVGNVGLST 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPANV+RR+K DVLIVHT+
Sbjct 121 IAGRLLGSVPANVARRSKSDVLIVHTS 147
>gi|120404316|ref|YP_954145.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119957134|gb|ABM14139.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=147
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/147 (77%), Positives = 132/147 (90%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIA-GADAKLIIASAYLPQHEDARAADILKDESYK 59
MSAY+TVVVGTDGSDSS+RAVDRA QIA GA AKLI+A+AY PQ EDARAAD+LKDE YK
Sbjct 1 MSAYQTVVVGTDGSDSSLRAVDRAGQIAAGAHAKLIVATAYFPQTEDARAADVLKDEGYK 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
++G APIY IL +A++RA AGA+N+EE+ +VGAPVDALV+L +E ADLLVVGNVGLST
Sbjct 61 MSGNAPIYAILREARDRAKAAGAENIEEKAVVGAPVDALVDLVEEVGADLLVVGNVGLST 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPANV+RR+K+DVLIVHT+
Sbjct 121 IAGRLLGSVPANVARRSKIDVLIVHTS 147
>gi|333990452|ref|YP_004523066.1| iron-regulated protein [Mycobacterium sp. JDM601]
gi|333486420|gb|AEF35812.1| iron-regulated protein [Mycobacterium sp. JDM601]
Length=148
Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/147 (78%), Positives = 124/147 (85%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIA-GADAKLIIASAYLPQHEDARAADILKDESYK 59
MS YKTVVVGTDGSDSS+RAVDRA +A G AK++IA+AYLP +D RA D LKDESYK
Sbjct 1 MSGYKTVVVGTDGSDSSLRAVDRAGHLASGEGAKVVIATAYLPHADDPRAVDALKDESYK 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
+G+APIY IL +AKERA AGA VEER IVGAPVDALV LA+ ADLLVVGNVGLST
Sbjct 61 ASGSAPIYAILKEAKERAIAAGAYEVEERAIVGAPVDALVELAESVNADLLVVGNVGLST 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPANVSRRAKVDVLIVHTT
Sbjct 121 IAGRLLGSVPANVSRRAKVDVLIVHTT 147
>gi|343926127|ref|ZP_08765637.1| hypothetical protein GOALK_055_00020 [Gordonia alkanivorans NBRC
16433]
gi|343763958|dbj|GAA12563.1| hypothetical protein GOALK_055_00020 [Gordonia alkanivorans NBRC
16433]
Length=148
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/147 (66%), Positives = 117/147 (80%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDA-RAADILKDESYK 59
MSAY+T+VVGTDGS+SSM+AV+RA +AG A+L+IA AY P A AADILKDE+Y+
Sbjct 1 MSAYETIVVGTDGSESSMKAVERAGALAGEGAQLVIACAYFPNERGAGEAADILKDEAYQ 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
VTG+ P EIL AKERA AGA V +RP+ GAPVDAL+ L + KADLLVVGN GL++
Sbjct 61 VTGSTPTEEILRTAKERASKAGAATVVQRPVKGAPVDALLQLVSDVKADLLVVGNRGLNS 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPA+V+R++ DVLIVHTT
Sbjct 121 IAGRLLGSVPADVARKSACDVLIVHTT 147
>gi|169629398|ref|YP_001703047.1| hypothetical protein MAB_2312 [Mycobacterium abscessus ATCC 19977]
gi|169241365|emb|CAM62393.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=146
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/147 (69%), Positives = 121/147 (83%), Gaps = 2/147 (1%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDR-AAQIAGADAKLIIASAYLPQHEDARAADILKDESYK 59
MSAY TVVVGTDGSDSS RAVDR A A AKLI+A+AY P++ + +AD+LKD++YK
Sbjct 1 MSAYSTVVVGTDGSDSSYRAVDRAGAIAGAAGAKLIVATAYFPEN-NPHSADVLKDDAYK 59
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
VTG AP+Y+IL A+ERA AGA +VEER I GAPVDAL++L KADLLVVGNVGL+T
Sbjct 60 VTGKAPVYDILRTARERATAAGAGSVEERSIEGAPVDALLDLVVNSKADLLVVGNVGLNT 119
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVP++V+RR+K DVLIVHTT
Sbjct 120 IAGRLLGSVPSDVARRSKCDVLIVHTT 146
>gi|226306793|ref|YP_002766753.1| hypothetical protein RER_33060 [Rhodococcus erythropolis PR4]
gi|226185910|dbj|BAH34014.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=150
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/148 (65%), Positives = 120/148 (82%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIA-GADAKLIIASAYLPQ--HEDARAADILKDES 57
MSAY+TVVVGTDGS+SS++AVDRAA IA G+DA+L+IA AY P + + AAD L +E+
Sbjct 1 MSAYRTVVVGTDGSESSLKAVDRAAAIASGSDAQLVIACAYYPADPKDVSAAADALGNEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+VTG+AP YEIL A+ERAH GAK+V ER IVGAPV++L+ L DE K DLLVVGN GL
Sbjct 61 YQVTGSAPTYEILRTARERAHAQGAKDVVERAIVGAPVESLLALLDEVKGDLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++ +R+A DVLIVHT
Sbjct 121 NTLTGRLLGSVPSDAARKATSDVLIVHT 148
>gi|229492721|ref|ZP_04386522.1| UspA domain protein [Rhodococcus erythropolis SK121]
gi|229320380|gb|EEN86200.1| UspA domain protein [Rhodococcus erythropolis SK121]
Length=150
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/148 (65%), Positives = 120/148 (82%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIA-GADAKLIIASAYLPQ--HEDARAADILKDES 57
MSAY+TVVVGTDGS+SS++AVDRAA IA G+DA+L+IA AY P + + AAD L +E+
Sbjct 1 MSAYRTVVVGTDGSESSLKAVDRAAAIASGSDAQLVIACAYYPADPKDVSAAADALGNEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+VTG+AP YEIL A+ERAH GAK+V ER +VGAPV++L+ L DE K DLLVVGN GL
Sbjct 61 YQVTGSAPTYEILRTARERAHAQGAKDVVERAVVGAPVESLLALLDEVKGDLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++ +R+A DVLIVHT
Sbjct 121 NTLTGRLLGSVPSDAARKATSDVLIVHT 148
>gi|333919163|ref|YP_004492744.1| UspA domain-containing protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333481384|gb|AEF39944.1| UspA domain protein [Amycolicicoccus subflavus DQS3-9A1]
Length=154
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/148 (61%), Positives = 118/148 (80%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQ--HEDARAADILKDES 57
M+AY+T+VVG+DGS+SS++AV++A +AG DAKL++A AY P E A D LKD++
Sbjct 5 MTAYRTIVVGSDGSESSLKAVEKAGALAGDGDAKLVVACAYYPSDPKELGDAVDQLKDDA 64
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y++TG AP YEIL A+ERA +AGAKNV ER +VGAPVD+L+ L +E ADLLVVGN GL
Sbjct 65 YQITGAAPTYEILRKARERAVDAGAKNVVERAVVGAPVDSLLALVEEVSADLLVVGNRGL 124
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++V+R++ DVLIVHT
Sbjct 125 NTLTGRLLGSVPSDVARKSASDVLIVHT 152
>gi|326382690|ref|ZP_08204381.1| UspA domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
gi|326198809|gb|EGD55992.1| UspA domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
Length=147
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/148 (62%), Positives = 113/148 (77%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAA--DILKDESY 58
MS Y T+VVGTDGS+SSM+AV+RA I+G DA ++IA AY P A +A D L+DE+Y
Sbjct 1 MSGYTTIVVGTDGSESSMKAVERAGAISG-DATVVIACAYFPNDGKAASAATDTLRDEAY 59
Query 59 KVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLS 118
+V G++P EIL AKERA AGA V +R I GAPVDAL+ L + +ADLLVVGN GL+
Sbjct 60 QVMGSSPTEEILRTAKERATGAGATKVVQRAIQGAPVDALLQLVVDVQADLLVVGNKGLN 119
Query 119 TIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+IAGRLLGSVPA+V+R+A DVLIVHTT
Sbjct 120 SIAGRLLGSVPADVARKAACDVLIVHTT 147
>gi|262202762|ref|YP_003273970.1| UspA domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262086109|gb|ACY22077.1| UspA domain protein [Gordonia bronchialis DSM 43247]
Length=148
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/147 (66%), Positives = 117/147 (80%), Gaps = 1/147 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHE-DARAADILKDESYK 59
MSAY+TVVVGTDGS+SSM+AV+RA +AG A+L+IA AY P AADILKDE+Y+
Sbjct 1 MSAYETVVVGTDGSESSMKAVERAGALAGERAQLVIACAYFPNDRGSGEAADILKDEAYQ 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
VTG+AP EIL A+ERA AGA N+ RP+ GAPVDAL+ L + KADLLVVGN GL++
Sbjct 61 VTGSAPTEEILRTARERAAGAGATNIVPRPVKGAPVDALLQLVTDVKADLLVVGNRGLNS 120
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHTT 146
IAGRLLGSVPA+V+R++ DVLIVHTT
Sbjct 121 IAGRLLGSVPADVARKSACDVLIVHTT 147
>gi|111017988|ref|YP_700960.1| hypothetical protein RHA1_ro00974 [Rhodococcus jostii RHA1]
gi|110817518|gb|ABG92802.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=150
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/148 (63%), Positives = 116/148 (79%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLP--QHEDARAADILKDES 57
MSAY+TVVVGTDGS+SS AV++AA IAG KLIIA AY P + +AAD L DE+
Sbjct 1 MSAYRTVVVGTDGSESSFLAVEKAAAIAGDAGAKLIIACAYYPADPKDVGQAADALGDEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y++TG+AP YEIL AKERAH AGAK V ER +VGAPV++L+NL DE +A LLV+GN GL
Sbjct 61 YQITGSAPTYEILRTAKERAHAAGAKEVVERAVVGAPVESLLNLVDEVEAGLLVIGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++ +R++ DVLIVHT
Sbjct 121 NTLTGRLLGSVPSDAARKSTSDVLIVHT 148
>gi|296140128|ref|YP_003647371.1| UspA domain-containing protein [Tsukamurella paurometabola DSM
20162]
gi|296028262|gb|ADG79032.1| UspA domain protein [Tsukamurella paurometabola DSM 20162]
Length=148
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/148 (58%), Positives = 114/148 (78%), Gaps = 2/148 (1%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLP-QHEDARAADILKDESYK 59
MS Y TVVVGTDGS+SS+RAVDRAA IAG + KL+IA AYLP + D AAD+L+DE+Y+
Sbjct 1 MSGYSTVVVGTDGSESSLRAVDRAASIAGDNVKLVIACAYLPSEAADPAAADVLRDEAYQ 60
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEE-KADLLVVGNVGLS 118
+ G P+ ++L A+ RA AGAKNVE+R I G PV+AL++L + + LLVVGN G++
Sbjct 61 LQGANPVNDMLRTAEGRALKAGAKNVEKRAIKGQPVEALLDLVKSQPEPSLLVVGNKGMN 120
Query 119 TIAGRLLGSVPANVSRRAKVDVLIVHTT 146
++ GRLLGSVP++ +R+ VD+LIVHTT
Sbjct 121 SLTGRLLGSVPSDAARKTSVDILIVHTT 148
>gi|226360117|ref|YP_002777895.1| Usp family protein [Rhodococcus opacus B4]
gi|226238602|dbj|BAH48950.1| putative Usp family protein [Rhodococcus opacus B4]
Length=150
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/148 (63%), Positives = 115/148 (78%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLP--QHEDARAADILKDES 57
MSAY+TVVVGTDGS+SS AV++AA IAG KLIIA AY P + AAD L DE+
Sbjct 1 MSAYRTVVVGTDGSESSFLAVEKAAAIAGDAGAKLIIACAYYPADPKDVGSAADALGDEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y++TG+AP YEIL AKERAH AGAK V ER +VGAPV++L+NL DE +A LLV+GN GL
Sbjct 61 YQITGSAPTYEILRTAKERAHAAGAKEVVERAVVGAPVESLLNLVDEVEAGLLVIGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++ +R++ DVLIVHT
Sbjct 121 NTLTGRLLGSVPSDAARKSTSDVLIVHT 148
>gi|342858508|ref|ZP_08715163.1| UspA domain-containing protein [Mycobacterium colombiense CECT
3035]
gi|342134212|gb|EGT87392.1| UspA domain-containing protein [Mycobacterium colombiense CECT
3035]
Length=153
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/151 (65%), Positives = 116/151 (77%), Gaps = 5/151 (3%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGAD-AKLIIASAYLPQHEDARAADIL----KD 55
MSAY+TVVVGTDGSDSS+RAV+RAA IA AKLI+A+A+LP E+ I
Sbjct 1 MSAYQTVVVGTDGSDSSLRAVERAAAIAAEHGAKLIVATAHLPVPEERGRYAIPPGSDHG 60
Query 56 ESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNV 115
+ Y+ G AP Y IL DA+ERAH GAKNVEE+ IVGAP++ LV LA+E ADLLVVGNV
Sbjct 61 QDYRTVGEAPYYAILRDARERAHQVGAKNVEEKSIVGAPINVLVQLAEEAHADLLVVGNV 120
Query 116 GLSTIAGRLLGSVPANVSRRAKVDVLIVHTT 146
GL+++AGRLLGSVPA VSRR+K DVLIVHTT
Sbjct 121 GLNSVAGRLLGSVPAAVSRRSKTDVLIVHTT 151
>gi|254820785|ref|ZP_05225786.1| UspA domain-containing protein [Mycobacterium intracellulare
ATCC 13950]
Length=152
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/152 (63%), Positives = 114/152 (75%), Gaps = 9/152 (5%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLP-QHEDARAA-----DIL 53
MSAY+TVVVGTDGSDSS+ AV+RAA IA A+LI+ +A+LP E R A D
Sbjct 1 MSAYQTVVVGTDGSDSSLLAVERAAAIAADHGARLIVVTAHLPVPKERGRYAIPPGSDHG 60
Query 54 KDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVG 113
+D Y+ G AP Y IL DA ERAH AGA NVEER IVGAP++ LV +A+E +ADL+VVG
Sbjct 61 QD--YRTVGEAPYYRILRDATERAHQAGANNVEERSIVGAPINVLVQVAEEVRADLMVVG 118
Query 114 NVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 145
NVGL+++AGRLLGSVP+ VSRR K DVLIVHT
Sbjct 119 NVGLNSVAGRLLGSVPSEVSRRVKTDVLIVHT 150
>gi|54023873|ref|YP_118115.1| hypothetical protein nfa19050 [Nocardia farcinica IFM 10152]
gi|54015381|dbj|BAD56751.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=150
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/148 (59%), Positives = 116/148 (79%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLPQ--HEDARAADILKDES 57
M+AY+T+VVGTDGSDSS AV++AA +A L++A AY P E A AAD+LKDE+
Sbjct 1 MTAYRTIVVGTDGSDSSYVAVEKAAALAADADATLVVACAYYPTDDREIAAAADVLKDEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+V G+AP EIL A+++A +GAKN+ ERP+VG PV++L+NL E +ADLLVVGN GL
Sbjct 61 YQVRGSAPTTEILRIARDKAVASGAKNIIERPVVGEPVESLLNLVKETEADLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++V+R+++ DVLIVHT
Sbjct 121 NTLTGRLLGSVPSDVARKSRSDVLIVHT 148
>gi|312139893|ref|YP_004007229.1| universal stress family protein [Rhodococcus equi 103S]
gi|325674228|ref|ZP_08153917.1| universal stress protein [Rhodococcus equi ATCC 33707]
gi|311889232|emb|CBH48546.1| putative universal stress family protein [Rhodococcus equi 103S]
gi|325554908|gb|EGD24581.1| universal stress protein [Rhodococcus equi ATCC 33707]
Length=154
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/148 (62%), Positives = 117/148 (80%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKL-IIASAYLP-QHEDARAA-DILKDES 57
M+AY+TVVVGTDGSDSS RAVD+AA +AGA +IA AY P +D AA D L++++
Sbjct 5 MTAYRTVVVGTDGSDSSYRAVDKAAALAGAADAKLVIACAYYPADPKDTEAAQDTLREDA 64
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+VTG+AP YEIL A+ERA AGAK++ ER +VGAPVD+L+ L DE +ADLLVVGN GL
Sbjct 65 YQVTGSAPTYEILRRARERALGAGAKDIVERAVVGAPVDSLLALVDEVEADLLVVGNRGL 124
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
+T+ GRLLGSVP++ +R++ DVLIVHT
Sbjct 125 NTLTGRLLGSVPSDAARKSTCDVLIVHT 152
>gi|296393563|ref|YP_003658447.1| UspA domain-containing protein [Segniliparus rotundus DSM 44985]
gi|296180710|gb|ADG97616.1| UspA domain protein [Segniliparus rotundus DSM 44985]
Length=149
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/148 (59%), Positives = 112/148 (76%), Gaps = 3/148 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADI-LKDESY 58
M+ Y++VVVGTDGS+SS RAV+RAA+++GA A L IA+AY AA LK E++
Sbjct 1 MALYRSVVVGTDGSESSFRAVERAAEVSGAAGATLYIATAYQQGAAAGGAAADALKGEAF 60
Query 59 KVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGL 117
++TG+ P YEIL A +RA AGA+N+E+R I G PVDAL++L KADLLVVGN GL
Sbjct 61 QITGSTPAYEILRAATDRAKKAGAQNIEQRAIEGKNPVDALIDLVIGVKADLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHT 145
S+I GRLLGSVP++V+RRA +DVLIVHT
Sbjct 121 SSITGRLLGSVPSDVARRADIDVLIVHT 148
>gi|118468602|ref|YP_887617.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118169889|gb|ABK70785.1| universal stress protein family protein, putative [Mycobacterium
smegmatis str. MC2 155]
Length=162
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/160 (53%), Positives = 111/160 (70%), Gaps = 15/160 (9%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGAD-AKLIIASAYLPQHE-------------- 45
M Y+TV+VGTDGS SSMRAV+RA +A + AKLIIA+A+ E
Sbjct 1 MGGYRTVIVGTDGSVSSMRAVERAGAVAAQENAKLIIATAHFHHGEKGGWARPPAPDQVR 60
Query 46 DARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEE 105
D RA D L E Y++ G A YE+L DA++ A+ AGA+++ ER + GAPV AL+ LA E
Sbjct 61 DRRAEDALGREGYRMHGDADAYEVLRDARDVAYAAGARDIHERVVEGAPVAALLTLAKEV 120
Query 106 KADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 145
ADL+VVG+VGL ++AGRLLGSVPA ++R++KVD+LIVHT
Sbjct 121 DADLIVVGDVGLDSVAGRLLGSVPAEIARKSKVDILIVHT 160
>gi|317506719|ref|ZP_07964502.1| universal stress protein family [Segniliparus rugosus ATCC BAA-974]
gi|316254973|gb|EFV14260.1| universal stress protein family [Segniliparus rugosus ATCC BAA-974]
Length=150
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/149 (60%), Positives = 113/149 (76%), Gaps = 4/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLPQ--HEDARAADILKDES 57
M+ Y++VVVGTDGS+SS RAV+RAA++AGA L IA+AY Q A+D LK E+
Sbjct 1 MALYRSVVVGTDGSESSFRAVERAAEVAGAAGATLYIATAYQQQGGSSSGPASDALKGEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVG 116
+++TG AP YEILH A +RA NAGA+ +EER I PVDAL++L KADLLVVGN G
Sbjct 61 FQITGNAPAYEILHSAADRARNAGAQRIEERAIADKNPVDALIDLVIGVKADLLVVGNRG 120
Query 117 LSTIAGRLLGSVPANVSRRAKVDVLIVHT 145
LS+I GR+LGSVP++V+R+A +DVLIVHT
Sbjct 121 LSSITGRILGSVPSDVARKADIDVLIVHT 149
>gi|289569682|ref|ZP_06449909.1| iron-regulated conserved hypothetical protein [Mycobacterium
tuberculosis T17]
gi|289543436|gb|EFD47084.1| iron-regulated conserved hypothetical protein [Mycobacterium
tuberculosis T17]
Length=98
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/74 (99%), Positives = 74/74 (100%), Gaps = 0/74 (0%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV
Sbjct 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKV 60
Query 61 TGTAPIYEILHDAK 74
TGTAPIYEILHDA+
Sbjct 61 TGTAPIYEILHDAR 74
>gi|325002904|ref|ZP_08124016.1| universal stress protein [Pseudonocardia sp. P1]
Length=149
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/149 (57%), Positives = 101/149 (68%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLP-QHEDARAA-DILKDES 57
M AY+T+VVGTDGS +S AV+RAA +A + A L+I SAY P ED AA D LKDE+
Sbjct 1 MPAYQTIVVGTDGSSTSFAAVERAAGVAADSGATLVIVSAYTPASREDTAAAEDALKDEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y VTG P E L +A +RA GA NV GAPVD L + ADLLV+GN GL
Sbjct 61 YLVTGWTPAEEALREAADRAAKVGAANVSTHAEDGAPVDVLRKAVKDHHADLLVIGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+T +GRLLGSVPA+ +RRA VDVL+VHTT
Sbjct 121 NTFSGRLLGSVPADATRRAGVDVLVVHTT 149
>gi|319949849|ref|ZP_08023862.1| hypothetical protein ES5_10187 [Dietzia cinnamea P4]
gi|319436488|gb|EFV91595.1| hypothetical protein ES5_10187 [Dietzia cinnamea P4]
Length=149
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/149 (58%), Positives = 109/149 (74%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLP--QHEDARAADILKDES 57
MSAY VVVGTDGS+SS RAVDRAA++A L+IA AY+P ++AAD L D++
Sbjct 1 MSAYTKVVVGTDGSESSYRAVDRAARLAADAGATLVIACAYVPADPRSVSQAADQLGDDA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y++ G P +I+ A+ERA AGA +E R + GAPV++L+ LADE ADLLVVGN GL
Sbjct 61 YQIRGDNPAEDIVRGARERALAAGATQLETRTVRGAPVESLIKLADEMDADLLVVGNKGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+++ GRLLGSVPA+ +RRA DVLIVHTT
Sbjct 121 NSLTGRLLGSVPADAARRATCDVLIVHTT 149
>gi|271967200|ref|YP_003341396.1| hypothetical protein Sros_5918 [Streptosporangium roseum DSM
43021]
gi|270510375|gb|ACZ88653.1| conserved hypothetical protein [Streptosporangium roseum DSM
43021]
Length=152
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/149 (56%), Positives = 104/149 (70%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR--AADILKDES 57
M++Y+T+VVGTDGS SS RAV AA +A A L++A AY P E R AAD L + S
Sbjct 1 MASYRTIVVGTDGSPSSFRAVTSAASLASVTGATLVLACAYAPMRERERNAAADALGELS 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
YKV+G+ P + L A+E A AGA+ +E G VD LV LAD +ADLLV+GN GL
Sbjct 61 YKVSGSTPADDALRAAREHAVAAGARQIELAAEEGDAVDVLVALADRLEADLLVIGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+++AGRLLGSVP++VS+RA DVLIVHTT
Sbjct 121 NSLAGRLLGSVPSSVSQRAGCDVLIVHTT 149
>gi|345002939|ref|YP_004805793.1| UspA domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344318565|gb|AEN13253.1| UspA domain protein [Streptomyces sp. SirexAA-E]
Length=149
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/149 (54%), Positives = 105/149 (71%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQH--EDARAADILKDES 57
M AY+TV+VGTDGS+SS AV+ AA++A +A+L+IA AY P E +RA D L E+
Sbjct 1 MVAYRTVMVGTDGSESSFAAVEGAARLAAVCEAELVIACAYAPMRGPELSRATDQLGAEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
++V G+AP + L A++RA GA +V + PV ALV A E ADLLVVGN GL
Sbjct 61 FQVVGSAPAEDTLRIARDRARAQGAVHVRSVAVEDEPVAALVRTARECSADLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
++AGR+LGSVPA+V+RRA +DVLIVHTT
Sbjct 121 RSLAGRILGSVPADVARRAGLDVLIVHTT 149
>gi|291453043|ref|ZP_06592433.1| universal stress protein UspA [Streptomyces albus J1074]
gi|291355992|gb|EFE82894.1| universal stress protein UspA [Streptomyces albus J1074]
Length=149
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/149 (53%), Positives = 103/149 (70%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQH--EDARAADILKDES 57
M+AY+TV+VGTDGS+SS AV+ AA++A A+L++ AY+P E RA D L E+
Sbjct 1 MTAYQTVMVGTDGSESSFAAVEGAARLAAVCGAELVVVCAYVPMRGPELVRAQDQLGAEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+V G+AP + L A++RA GA+ V + PV AL A E ADLLVVGN GL
Sbjct 61 YQVVGSAPAEDTLQTARDRARAQGAERVRSLAVEDEPVAALARAARECAADLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
++AGRLLGSVPA+++R+A VDVLIVHTT
Sbjct 121 RSLAGRLLGSVPADIARKAPVDVLIVHTT 149
>gi|257056834|ref|YP_003134666.1| universal stress protein UspA-like protein [Saccharomonospora
viridis DSM 43017]
gi|256586706|gb|ACU97839.1| universal stress protein UspA-like protein [Saccharomonospora
viridis DSM 43017]
Length=149
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/149 (56%), Positives = 107/149 (72%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLPQHEDA--RAADILKDES 57
M+AY T+VVGTDGSDSS+ AV+RAA++A A L+IA AY P +D +A D+L E+
Sbjct 1 MAAYNTIVVGTDGSDSSLAAVERAARVAADSAATLVIACAYYPAGKDKIDKAQDVLGAEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+V G+AP E L A+ERA AGA ++E +VG PV +L + E ADLLVVGN GL
Sbjct 61 YQVVGSAPAEETLRTARERALKAGATSIECTAVVGEPVSSLRKVVKEHAADLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+T+AGR+LGSVP+ +R+ VDVLIVHTT
Sbjct 121 NTLAGRILGSVPSEAARKTGVDVLIVHTT 149
>gi|227488125|ref|ZP_03918441.1| possible universal stress protein UspA [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541522|ref|ZP_03971571.1| possible universal stress protein UspA [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091987|gb|EEI27299.1| possible universal stress protein UspA [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182678|gb|EEI63650.1| possible universal stress protein UspA [Corynebacterium glucuronolyticum
ATCC 51866]
Length=146
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/146 (53%), Positives = 100/146 (69%), Gaps = 3/146 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYK 59
MSAYK++VVGTDGS SS+ AV RAAQIA + DAKLII AY E +A L+ +S
Sbjct 1 MSAYKSIVVGTDGSKSSLLAVKRAAQIAASFDAKLIIGCAYYENEE--QATKTLRKDSVT 58
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
V G P + L A+ A GA N+E G PV+AL+ + E +ADLLVVGN G+++
Sbjct 59 VLGDDPALKNLETARATAEEVGASNIETAIKPGTPVEALMAIVHENEADLLVVGNRGINS 118
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHT 145
+ GRLLGSVPA+V+R+++ DV+IVHT
Sbjct 119 LTGRLLGSVPADVARQSECDVMIVHT 144
>gi|302524848|ref|ZP_07277190.1| universal stress protein UspA [Streptomyces sp. AA4]
gi|302433743|gb|EFL05559.1| universal stress protein UspA [Streptomyces sp. AA4]
Length=149
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/149 (52%), Positives = 102/149 (69%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLP--QHEDARAADILKDES 57
M+ Y+TVVVGTDGSDSS AVD+AA +A L++ AY P + + RA D L DE+
Sbjct 1 MAVYRTVVVGTDGSDSSFAAVDKAAGVAADAGATLVVVCAYHPASRQDVERAQDELGDEA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
Y+V G+AP + L A++RA GA +E + G PVD L + + ADLLVVGN GL
Sbjct 61 YQVVGSAPAEDTLQSARDRAAKVGATKIETVALEGQPVDMLRKVVKDRSADLLVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+T+AGR+LGSVP+ V+R++ VDVLIVHTT
Sbjct 121 NTLAGRILGSVPSEVARKSGVDVLIVHTT 149
>gi|269126525|ref|YP_003299895.1| UspA domain-containing protein [Thermomonospora curvata DSM 43183]
gi|268311483|gb|ACY97857.1| UspA domain protein [Thermomonospora curvata DSM 43183]
Length=152
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/149 (55%), Positives = 110/149 (74%), Gaps = 3/149 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR--AADILKDES 57
M++Y+T++VGTDGSDSS RAV++AA++A A L++ASAY P E R AAD L D +
Sbjct 1 MASYRTILVGTDGSDSSFRAVEQAARLAADTGATLVLASAYHPMSERKRLSAADQLGDLA 60
Query 58 YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 117
YKV G P + L A+ERA AGAK+++E + G VD LV +A + +ADL+VVGN GL
Sbjct 61 YKVQGATPAEDALRAARERAIAAGAKDIQEIAVEGDAVDVLVKVAKDRRADLMVVGNRGL 120
Query 118 STIAGRLLGSVPANVSRRAKVDVLIVHTT 146
+++AGR+LGSVPAN+S R+ D+LIVHTT
Sbjct 121 NSLAGRILGSVPANLSHRSPCDILIVHTT 149
>gi|300783496|ref|YP_003763787.1| universal stress protein [Amycolatopsis mediterranei U32]
gi|299793010|gb|ADJ43385.1| universal stress protein [Amycolatopsis mediterranei U32]
gi|340524882|gb|AEK40087.1| universal stress protein [Amycolatopsis mediterranei S699]
Length=170
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/148 (55%), Positives = 109/148 (74%), Gaps = 3/148 (2%)
Query 2 SAYKTVVVGTDGSDSSMRAVDRAAQIAGADA-KLIIASAYLP--QHEDARAADILKDESY 58
+AY+TVVVGTDGS+SS AVDRAA +AG L+IA AY P + + +A D+L DE+Y
Sbjct 23 AAYRTVVVGTDGSESSFAAVDRAAAVAGDAGATLVIACAYYPASKSDVDKAQDVLGDEAY 82
Query 59 KVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLS 118
+V G+AP + L A++RA AGA+ ++ + G PVD+L + E +ADLLVVGN GL+
Sbjct 83 QVVGSAPAEDTLQSARDRATRAGAEKIDTVAVKGDPVDSLRKVVHEREADLLVVGNRGLN 142
Query 119 TIAGRLLGSVPANVSRRAKVDVLIVHTT 146
TIAGR+LGSVP+ V+R++ VDVLIVHTT
Sbjct 143 TIAGRILGSVPSEVARKSGVDVLIVHTT 170
>gi|284992546|ref|YP_003411100.1| UspA domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284065791|gb|ADB76729.1| UspA domain protein [Geodermatophilus obscurus DSM 43160]
Length=152
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/151 (53%), Positives = 107/151 (71%), Gaps = 5/151 (3%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHED----ARAADILKD 55
MSAY+TVVVGTDGS+SS+RAV RA +AGA DA+L+I AYLP D RA + L +
Sbjct 1 MSAYRTVVVGTDGSESSLRAVRRAGALAGACDARLVIVCAYLPPRADDRELRRAQEQLGE 60
Query 56 ESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNV 115
+ + G+AP + + A E A AGA VE+ +VG+PV+ L+++ +ADLLVVGN
Sbjct 61 GATEGVGSAPAEDTVRGAAEEAVAAGAGEVEQVAVVGSPVETLLDVVTRAQADLLVVGNR 120
Query 116 GLSTIAGRLLGSVPANVSRRAKVDVLIVHTT 146
GL+ I RL+GSVPA+V+RR+ VDVL+VHTT
Sbjct 121 GLNGIRSRLMGSVPADVTRRSSVDVLVVHTT 151
>gi|337290617|ref|YP_004629638.1| hypothetical protein CULC22_01006 [Corynebacterium ulcerans BR-AD22]
gi|334696731|gb|AEG81528.1| hypothetical protein CULC809_00992 [Corynebacterium ulcerans
809]
gi|334698923|gb|AEG83719.1| hypothetical protein CULC22_01006 [Corynebacterium ulcerans BR-AD22]
Length=146
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 98/146 (68%), Gaps = 3/146 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYK 59
MS Y T+VVGTDGS SSM AV+RAA+IA A D+ L+I AY E+A + L+ +S
Sbjct 1 MSDYSTIVVGTDGSKSSMLAVERAAKIAAALDSTLVIGCAYYESKEEA--SKTLRQDSVA 58
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
V GT P + L A E A G VE + G PV+AL+++ E A+LLVVGN G+++
Sbjct 59 VLGTDPAQKNLDAAAEHAKGFGVGKVETKVRPGTPVEALMDIVRESNAELLVVGNRGINS 118
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHT 145
+ GRLLGSVPA+V+R++ DV+IVHT
Sbjct 119 LTGRLLGSVPADVARQSDCDVMIVHT 144
>gi|302330625|gb|ADL20819.1| Stress related protein [Corynebacterium pseudotuberculosis 1002]
Length=175
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 98/146 (68%), Gaps = 3/146 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYK 59
MS Y T+VVGTDGS SSM AV+RAA+IA A D+ L+I AY E+A + L+ +S
Sbjct 30 MSDYSTIVVGTDGSKSSMLAVERAAKIAAALDSTLVIGGAYYQSKEEA--SKTLRQDSVA 87
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
V GT P + L A E A + G VE + G PV+AL+ + E A+LLVVGN G+++
Sbjct 88 VLGTDPAQKNLEVAAEHAKSFGVTKVETKVHPGTPVEALMEIVRETHAELLVVGNRGINS 147
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHT 145
+ GRLLGSVPA+V+R++ DV+IVHT
Sbjct 148 LTGRLLGSVPADVARQSDCDVMIVHT 173
>gi|300858356|ref|YP_003783339.1| hypothetical protein cpfrc_00938 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685810|gb|ADK28732.1| hypothetical protein cpfrc_00938 [Corynebacterium pseudotuberculosis
FRC41]
gi|302206073|gb|ADL10415.1| Stress related protein [Corynebacterium pseudotuberculosis C231]
gi|308276311|gb|ADO26210.1| Putative stress related protein [Corynebacterium pseudotuberculosis
I19]
gi|341824745|gb|AEK92266.1| Stress related protein [Corynebacterium pseudotuberculosis PAT10]
Length=146
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 98/146 (68%), Gaps = 3/146 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYK 59
MS Y T+VVGTDGS SSM AV+RAA+IA A D+ L+I AY E+A + L+ +S
Sbjct 1 MSDYSTIVVGTDGSKSSMLAVERAAKIAAALDSTLVIGGAYYQSKEEA--SKTLRQDSVA 58
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
V GT P + L A E A + G VE + G PV+AL+ + E A+LLVVGN G+++
Sbjct 59 VLGTDPAQKNLEVAAEHAKSFGVTKVETKVHPGTPVEALMEIVRETHAELLVVGNRGINS 118
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHT 145
+ GRLLGSVPA+V+R++ DV+IVHT
Sbjct 119 LTGRLLGSVPADVARQSDCDVMIVHT 144
>gi|38233745|ref|NP_939512.1| putative stress-like protein [Corynebacterium diphtheriae NCTC
13129]
gi|38200006|emb|CAE49675.1| Putative stress related protein [Corynebacterium diphtheriae]
Length=146
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/146 (50%), Positives = 95/146 (66%), Gaps = 3/146 (2%)
Query 1 MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYK 59
MS Y T+VVGTDGS SSM AV+RAA+IA A D L++ AY EDA + L+ +S
Sbjct 1 MSDYSTIVVGTDGSKSSMLAVERAAKIAAAMDCTLVVGCAYYENKEDA--SKTLRQDSVT 58
Query 60 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 119
V G P + L A A GA +E + G PV+AL+ + E ADLLVVGN G+++
Sbjct 59 VLGNDPAQQNLDKAAAVAKEIGATKIETAILPGTPVEALMAIVREHNADLLVVGNRGINS 118
Query 120 IAGRLLGSVPANVSRRAKVDVLIVHT 145
+ GRLLGSVPA+V+R++ DV+IVHT
Sbjct 119 LTGRLLGSVPADVARQSDCDVMIVHT 144
Lambda K H
0.313 0.130 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127605758688
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40