BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1641
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
gi|148661437|ref|YP_001282960.1| translation initiation factor I... 407 3e-112
gi|289443095|ref|ZP_06432839.1| translation initiation factor IF... 407 4e-112
gi|15608779|ref|NP_216157.1| translation initiation factor IF-3 ... 406 7e-112
gi|121637549|ref|YP_977772.1| translation initiation factor IF-3... 405 1e-111
gi|15841097|ref|NP_336134.1| translation initiation factor IF-3 ... 374 3e-102
gi|296164540|ref|ZP_06847111.1| translation initiation factor IF... 365 3e-99
gi|14194828|sp|Q9CC22.1|IF3_MYCLE RecName: Full=Translation init... 362 1e-98
gi|240168026|ref|ZP_04746685.1| translation initiation factor IF... 361 3e-98
gi|118469171|ref|YP_888086.1| translation initiation factor IF-3... 358 3e-97
gi|167968405|ref|ZP_02550682.1| translation initiation factor IF... 352 1e-95
gi|120404302|ref|YP_954131.1| translation initiation factor IF-3... 348 4e-94
gi|108799947|ref|YP_640144.1| translation initiation factor 3 [M... 345 3e-93
gi|126435575|ref|YP_001071266.1| translation initiation factor 3... 344 4e-93
gi|315444462|ref|YP_004077341.1| bacterial translation initiatio... 340 7e-92
gi|343928315|ref|ZP_08767767.1| translation initiation factor IF... 339 2e-91
gi|118617266|ref|YP_905598.1| initiation factor IF-3 InfC [Mycob... 333 7e-90
gi|296140120|ref|YP_003647363.1| translation initiation factor I... 332 2e-89
gi|226360108|ref|YP_002777886.1| translation initiation factor I... 331 3e-89
gi|41407450|ref|NP_960286.1| translation initiation factor IF-3 ... 331 5e-89
gi|229492674|ref|ZP_04386475.1| translation initiation factor IF... 330 6e-89
gi|15827729|ref|NP_301992.1| translation initiation factor IF-3 ... 330 8e-89
gi|226306782|ref|YP_002766742.1| translation initiation factor I... 330 8e-89
gi|317507013|ref|ZP_07964780.1| translation initiation factor IF... 315 2e-84
gi|183982462|ref|YP_001850753.1| initiation factor IF-3 InfC [My... 311 4e-83
gi|296394206|ref|YP_003659090.1| translation initiation factor I... 309 2e-82
gi|254821220|ref|ZP_05226221.1| translation initiation factor IF... 309 2e-82
gi|118466944|ref|YP_882311.1| translation initiation factor IF-3... 308 2e-82
gi|342860773|ref|ZP_08717423.1| translation initiation factor IF... 305 2e-81
gi|300787907|ref|YP_003768198.1| translation initiation factor I... 305 3e-81
gi|145295514|ref|YP_001138335.1| translation initiation factor I... 301 3e-80
gi|19552595|ref|NP_600597.1| translation initiation factor IF-3 ... 300 1e-79
gi|25028065|ref|NP_738119.1| translation initiation factor IF-3 ... 299 2e-79
gi|169629407|ref|YP_001703056.1| translation initiation factor I... 297 5e-79
gi|259505617|ref|ZP_05748519.1| translation initiation factor IF... 297 6e-79
gi|336441448|gb|AEI54949.1| translation initiation factor IF-3 [... 296 8e-79
gi|256379477|ref|YP_003103137.1| translation initiation factor I... 295 3e-78
gi|336441452|gb|AEI54951.1| translation initiation factor IF-3 [... 291 3e-77
gi|333990460|ref|YP_004523074.1| initiation factor IF-3 InfC [My... 290 7e-77
gi|336441450|gb|AEI54950.1| translation initiation factor IF-3 [... 290 8e-77
gi|336441446|gb|AEI54948.1| translation initiation factor IF-3 [... 290 8e-77
gi|302528048|ref|ZP_07280390.1| translation initiation factor IF... 288 4e-76
gi|311742378|ref|ZP_07716187.1| translation initiation factor IF... 287 5e-76
gi|284033334|ref|YP_003383265.1| translation initiation factor I... 287 6e-76
gi|312139882|ref|YP_004007218.1| translation initiation factor 3... 287 8e-76
gi|331697626|ref|YP_004333865.1| translation initiation factor I... 285 2e-75
gi|145224126|ref|YP_001134804.1| initiation factor 3 [Mycobacter... 285 2e-75
gi|340529480|gb|AEK44685.1| translation initiation factor IF-3 [... 284 5e-75
gi|237785422|ref|YP_002906127.1| translation initiation factor I... 283 7e-75
gi|258654266|ref|YP_003203422.1| translation initiation factor I... 281 4e-74
gi|54023882|ref|YP_118124.1| putative translation initiation fac... 281 4e-74
>gi|148661437|ref|YP_001282960.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
H37Ra]
gi|148505589|gb|ABQ73398.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
H37Ra]
Length=222
Score = 407 bits (1047), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 201/201 (100%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 22 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 81
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI
Sbjct 82 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 141
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP
Sbjct 142 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 201
Query 181 GEPAGGPPPKPTAGDSKAAPN 201
GEPAGGPPPKPTAGDSKAAPN
Sbjct 202 GEPAGGPPPKPTAGDSKAAPN 222
>gi|289443095|ref|ZP_06432839.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
T46]
gi|289447251|ref|ZP_06436995.1| initiation factor IF-3 infC [Mycobacterium tuberculosis CPHL_A]
gi|289554584|ref|ZP_06443794.1| initiation factor IF-3 infC [Mycobacterium tuberculosis KZN 605]
13 more sequence titles
Length=214
Score = 407 bits (1047), Expect = 4e-112, Method: Compositional matrix adjust.
Identities = 201/201 (100%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 14 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 73
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI
Sbjct 74 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 133
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP
Sbjct 134 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 193
Query 181 GEPAGGPPPKPTAGDSKAAPN 201
GEPAGGPPPKPTAGDSKAAPN
Sbjct 194 GEPAGGPPPKPTAGDSKAAPN 214
>gi|15608779|ref|NP_216157.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
H37Rv]
gi|31792828|ref|NP_855321.1| translation initiation factor IF-3 [Mycobacterium bovis AF2122/97]
gi|148822849|ref|YP_001287603.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
F11]
14 more sequence titles
Length=201
Score = 406 bits (1044), Expect = 7e-112, Method: Compositional matrix adjust.
Identities = 200/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 1 MSTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI
Sbjct 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP
Sbjct 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
Query 181 GEPAGGPPPKPTAGDSKAAPN 201
GEPAGGPPPKPTAGDSKAAPN
Sbjct 181 GEPAGGPPPKPTAGDSKAAPN 201
>gi|121637549|ref|YP_977772.1| translation initiation factor IF-3 [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990024|ref|YP_002644711.1| putative initiation factor IF-3 [Mycobacterium bovis BCG str.
Tokyo 172]
gi|121493196|emb|CAL71667.1| PROBABLE INITIATION FACTOR IF-3 INFC [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224773137|dbj|BAH25943.1| putative initiation factor IF-3 [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341601567|emb|CCC64240.1| probable INITIATION FACTOR IF-3 INFC [Mycobacterium bovis BCG
str. Moreau RDJ]
Length=201
Score = 405 bits (1042), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 199/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETRVNERIRVPEVRLIGPGGEQVGIVRIED+LRVAADADLDLVEVAPNARPPVCKIM
Sbjct 1 MSTETRVNERIRVPEVRLIGPGGEQVGIVRIEDSLRVAADADLDLVEVAPNARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI
Sbjct 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP
Sbjct 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
Query 181 GEPAGGPPPKPTAGDSKAAPN 201
GEPAGGPPPKPTAGDSKAAPN
Sbjct 181 GEPAGGPPPKPTAGDSKAAPN 201
>gi|15841097|ref|NP_336134.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
CDC1551]
gi|253799319|ref|YP_003032320.1| initiation factor IF-3 infC [Mycobacterium tuberculosis KZN 1435]
gi|254364490|ref|ZP_04980536.1| initiation factor IF-3 infC [Mycobacterium tuberculosis str.
Haarlem]
33 more sequence titles
Length=184
Score = 374 bits (961), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 183/184 (99%), Positives = 184/184 (100%), Gaps = 0/184 (0%)
Query 18 LIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR 77
+IGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR
Sbjct 1 MIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR 60
Query 78 RNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL 137
RNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL
Sbjct 61 RNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL 120
Query 138 QRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSK 197
QRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSK
Sbjct 121 QRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSK 180
Query 198 AAPN 201
AAPN
Sbjct 181 AAPN 184
>gi|296164540|ref|ZP_06847111.1| translation initiation factor IF3 [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900140|gb|EFG79575.1| translation initiation factor IF3 [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=213
Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 181/201 (91%), Positives = 186/201 (93%), Gaps = 0/201 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 13 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 72
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHV+RFLEAGSKVKVTI
Sbjct 73 DYGKFKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVIRFLEAGSKVKVTI 132
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVA+YGF+ETSAKQDGRNMTMVLAPHRGAKTRARARHP
Sbjct 133 MFRGREQSRPELGYRLLQRLGADVAEYGFVETSAKQDGRNMTMVLAPHRGAKTRARARHP 192
Query 181 GEPAGGPPPKPTAGDSKAAPN 201
G P A +PN
Sbjct 193 EGHGDGTAPDTDASADTPSPN 213
>gi|14194828|sp|Q9CC22.1|IF3_MYCLE RecName: Full=Translation initiation factor IF-3
Length=202
Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/202 (90%), Positives = 186/202 (93%), Gaps = 1/202 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 1 MSTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYE AQKARESRRNQQQTVVKEQKLRPKIDDHDYETKK HVVRFLEAGSKVKVTI
Sbjct 61 DYGKYKYEVAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKSHVVRFLEAGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVADYGF+ETSAKQDGRNMTMVLAPHRGAKTRA ARHP
Sbjct 121 MFRGREQSRPELGYRLLQRLGADVADYGFVETSAKQDGRNMTMVLAPHRGAKTRASARHP 180
Query 181 GEPAGGPPPKPTA-GDSKAAPN 201
P G A GD+ +P+
Sbjct 181 EVPGAGSVQDIDATGDTDGSPH 202
>gi|240168026|ref|ZP_04746685.1| translation initiation factor IF-3 [Mycobacterium kansasii ATCC
12478]
Length=217
Score = 361 bits (927), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/186 (97%), Positives = 182/186 (98%), Gaps = 0/186 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 25 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 84
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI
Sbjct 85 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 144
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVA+YGF+ET+ KQDGRNMTMVLAPHRGAKTRARARH
Sbjct 145 MFRGREQSRPELGYRLLQRLGADVAEYGFVETAPKQDGRNMTMVLAPHRGAKTRARARHG 204
Query 181 GEPAGG 186
PAGG
Sbjct 205 EGPAGG 210
>gi|118469171|ref|YP_888086.1| translation initiation factor IF-3 [Mycobacterium smegmatis str.
MC2 155]
gi|118170458|gb|ABK71354.1| translation initiation factor IF-3 [Mycobacterium smegmatis str.
MC2 155]
Length=206
Score = 358 bits (918), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/193 (92%), Positives = 182/193 (95%), Gaps = 0/193 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM
Sbjct 13 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 72
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYE AQKARESR+NQQQTVVKEQKLRPKIDDHDYETKKGHV+RFLEAGSKVKVTI
Sbjct 73 DYGKYKYETAQKARESRKNQQQTVVKEQKLRPKIDDHDYETKKGHVIRFLEAGSKVKVTI 132
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLGADVA+YGF+ETSAKQDGRNMTMVLAPHRGAKTRA+A
Sbjct 133 MFRGREQSRPELGYRLLQRLGADVAEYGFVETSAKQDGRNMTMVLAPHRGAKTRAKAAEQ 192
Query 181 GEPAGGPPPKPTA 193
E GGP P A
Sbjct 193 AERPGGPAPDEDA 205
>gi|167968405|ref|ZP_02550682.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
H37Ra]
gi|254231842|ref|ZP_04925169.1| initiation factor IF-3 infC [Mycobacterium tuberculosis C]
gi|254550647|ref|ZP_05141094.1| translation initiation factor IF-3 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
6 more sequence titles
Length=173
Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%), Gaps = 0/173 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG
Sbjct 61 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSKAAPN 201
FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSKAAPN
Sbjct 121 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSKAAPN 173
>gi|120404302|ref|YP_954131.1| translation initiation factor IF-3 [Mycobacterium vanbaalenii
PYR-1]
gi|119957120|gb|ABM14125.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
vanbaalenii PYR-1]
Length=243
Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 175/200 (88%), Positives = 186/200 (93%), Gaps = 7/200 (3%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAP+A+PPVCKIM
Sbjct 41 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPDAKPPVCKIM 100
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYE AQKARESR+NQQQTVVKEQKLRPKID HDYETKKGHV+RFLEAGSKVKVTI
Sbjct 101 DYGKFKYETAQKARESRKNQQQTVVKEQKLRPKIDPHDYETKKGHVIRFLEAGSKVKVTI 160
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELG+RLLQRLGADVA+YGFIETSAKQDGRNMTMVLAPHRGAKTRA+A H
Sbjct 161 MFRGREQSRPELGFRLLQRLGADVAEYGFIETSAKQDGRNMTMVLAPHRGAKTRAKAAHD 220
Query 181 GE-PAGGPPPKPTAGDSKAA 199
+ PAG GD++AA
Sbjct 221 ADTPAG------QRGDAQAA 234
>gi|108799947|ref|YP_640144.1| translation initiation factor 3 [Mycobacterium sp. MCS]
gi|119869057|ref|YP_939009.1| translation initiation factor 3 [Mycobacterium sp. KMS]
gi|108770366|gb|ABG09088.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
sp. MCS]
gi|119695146|gb|ABL92219.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
sp. KMS]
Length=238
Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/191 (90%), Positives = 180/191 (95%), Gaps = 4/191 (2%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAP+A+PPVCKIM
Sbjct 45 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPDAKPPVCKIM 104
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYE AQKARESR+NQQQTVVKEQKLRPKID HDYETKKGHV+RFLEAGSKVKVTI
Sbjct 105 DYGKFKYETAQKARESRKNQQQTVVKEQKLRPKIDPHDYETKKGHVIRFLEAGSKVKVTI 164
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRAR---- 176
MFRGREQSRPELG+RLLQRLGADVA+YGF+ETSAKQDGRNMTMVLAPHRGAKTRA+
Sbjct 165 MFRGREQSRPELGFRLLQRLGADVAEYGFVETSAKQDGRNMTMVLAPHRGAKTRAKAAEQ 224
Query 177 ARHPGEPAGGP 187
A P E A GP
Sbjct 225 AERPRESAPGP 235
>gi|126435575|ref|YP_001071266.1| translation initiation factor 3 [Mycobacterium sp. JLS]
gi|126235375|gb|ABN98775.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
sp. JLS]
Length=238
Score = 344 bits (882), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/191 (90%), Positives = 180/191 (95%), Gaps = 4/191 (2%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAP+A+PPVCKIM
Sbjct 45 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPDAKPPVCKIM 104
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYE AQKARESR+NQQQTVVKEQKLRPKID HDYETKKGHV+RFLEAGSKVKVTI
Sbjct 105 DYGKFKYETAQKARESRKNQQQTVVKEQKLRPKIDPHDYETKKGHVIRFLEAGSKVKVTI 164
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRAR---- 176
MFRGREQSRPELG+RLLQRLGADVA+YGF+ETSAKQDGRNMTMVLAPHRGAKTRA+
Sbjct 165 MFRGREQSRPELGFRLLQRLGADVAEYGFVETSAKQDGRNMTMVLAPHRGAKTRAKAAEQ 224
Query 177 ARHPGEPAGGP 187
A P E A GP
Sbjct 225 AERPRESAPGP 235
>gi|315444462|ref|YP_004077341.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
sp. Spyr1]
gi|315262765|gb|ADT99506.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
sp. Spyr1]
Length=203
Score = 340 bits (872), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 164/174 (95%), Positives = 172/174 (99%), Gaps = 0/174 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAP+A+PPVCKIM
Sbjct 1 MSTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPDAKPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYE AQKARESR+NQQQTVVKEQKLRPKID HDYETKKGHV+RFLEAGSKVKVTI
Sbjct 61 DYGKFKYETAQKARESRKNQQQTVVKEQKLRPKIDPHDYETKKGHVIRFLEAGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTR 174
MFRGREQSRPELG+RLLQRLGADVADYGF+ETSAKQDGRNMTMVLAPHRGAKTR
Sbjct 121 MFRGREQSRPELGFRLLQRLGADVADYGFVETSAKQDGRNMTMVLAPHRGAKTR 174
>gi|343928315|ref|ZP_08767767.1| translation initiation factor IF-3 [Gordonia alkanivorans NBRC
16433]
gi|343761785|dbj|GAA14693.1| translation initiation factor IF-3 [Gordonia alkanivorans NBRC
16433]
Length=219
Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/187 (88%), Positives = 176/187 (95%), Gaps = 0/187 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETR+NERIRVPEVRL+GP EQVGIVR+EDALR+A +ADLDLVEVAP+ARPPVCKIM
Sbjct 26 ISTETRINERIRVPEVRLVGPNSEQVGIVRVEDALRLAYEADLDLVEVAPDARPPVCKIM 85
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQK RESRRNQQ TV+KEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI
Sbjct 86 DYGKFKYEAAQKQRESRRNQQMTVIKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 145
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQRLG DVADYGF+ETSAKQDGRNMTMVLAPH+GAKTR +A+
Sbjct 146 MFRGREQSRPELGYRLLQRLGNDVADYGFVETSAKQDGRNMTMVLAPHKGAKTRQKAQES 205
Query 181 GEPAGGP 187
E +GGP
Sbjct 206 RERSGGP 212
>gi|118617266|ref|YP_905598.1| initiation factor IF-3 InfC [Mycobacterium ulcerans Agy99]
gi|118569376|gb|ABL04127.1| initiation factor IF-3 InfC [Mycobacterium ulcerans Agy99]
Length=178
Score = 333 bits (854), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 161/167 (97%), Positives = 166/167 (99%), Gaps = 0/167 (0%)
Query 18 LIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR 77
+IGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR
Sbjct 1 MIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR 60
Query 78 RNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL 137
RNQQQTVVKEQKLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLL
Sbjct 61 RNQQQTVVKEQKLRPKIDDHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGYRLL 120
Query 138 QRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPA 184
QRLGADVA+YGF+ETSAKQDGRNMTMVLAPHRGAKTRARARHP +PA
Sbjct 121 QRLGADVAEYGFVETSAKQDGRNMTMVLAPHRGAKTRARARHPDDPA 167
>gi|296140120|ref|YP_003647363.1| translation initiation factor IF-3 [Tsukamurella paurometabola
DSM 20162]
gi|296028254|gb|ADG79024.1| translation initiation factor IF-3 [Tsukamurella paurometabola
DSM 20162]
Length=196
Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/182 (87%), Positives = 173/182 (96%), Gaps = 0/182 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETR N +IRVPEVRL+GPGGEQVGIVR+EDAL++A +ADLDLVEVAPNARPPVCKIM
Sbjct 1 MSTETRTNGQIRVPEVRLVGPGGEQVGIVRVEDALKLAYEADLDLVEVAPNARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQK RESR+NQQ TV+KEQKLRPKIDDHDYETKKGHVVRFLE GSKVKVTI
Sbjct 61 DYGKFKYEAAQKQRESRKNQQMTVIKEQKLRPKIDDHDYETKKGHVVRFLEQGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELG+RLLQRLGADVA+YGFIETSAKQDGRNMTMVLAPH+GAKTRA+A+
Sbjct 121 MFRGREQSRPELGFRLLQRLGADVAEYGFIETSAKQDGRNMTMVLAPHKGAKTRAKAQQD 180
Query 181 GE 182
E
Sbjct 181 KE 182
>gi|226360108|ref|YP_002777886.1| translation initiation factor IF-3 [Rhodococcus opacus B4]
gi|226238593|dbj|BAH48941.1| translation initiation factor IF-3 [Rhodococcus opacus B4]
Length=215
Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/188 (86%), Positives = 177/188 (95%), Gaps = 3/188 (1%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETR+N+RIRVPEVRL+GPGGEQVGIVR+EDALR+A +ADLDLVEVAP+ARPPVCKIM
Sbjct 1 MSTETRINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQ TV+KEQKLRPKIDDHDYETKK +VVRFLEAGSKVKVTI
Sbjct 61 DYGKFKYEAAQKARESRKNQQLTVIKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELG+RLLQRLGADVAD GF+ETSAKQDGRNMTMVLAPH+GAKTR +A+
Sbjct 121 MFRGREQSRPELGFRLLQRLGADVADLGFVETSAKQDGRNMTMVLAPHKGAKTRVKAQ-- 178
Query 181 GEPAGGPP 188
E A PP
Sbjct 179 -ESAAAPP 185
>gi|41407450|ref|NP_960286.1| translation initiation factor IF-3 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395802|gb|AAS03669.1| InfC [Mycobacterium avium subsp. paratuberculosis K-10]
Length=184
Score = 331 bits (848), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 160/168 (96%), Positives = 165/168 (99%), Gaps = 0/168 (0%)
Query 18 LIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR 77
+IGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGK+KYEAAQKARESR
Sbjct 1 MIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKFKYEAAQKARESR 60
Query 78 RNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL 137
RNQQQTVVKEQKLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLL
Sbjct 61 RNQQQTVVKEQKLRPKIDDHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGYRLL 120
Query 138 QRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAG 185
QRLGADVA+YGF+ETSAKQDGRNMTMVLAPHRGAKTRARARHP P G
Sbjct 121 QRLGADVAEYGFVETSAKQDGRNMTMVLAPHRGAKTRARARHPEGPGG 168
>gi|229492674|ref|ZP_04386475.1| translation initiation factor IF-3 [Rhodococcus erythropolis
SK121]
gi|229320333|gb|EEN86153.1| translation initiation factor IF-3 [Rhodococcus erythropolis
SK121]
Length=230
Score = 330 bits (846), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 158/179 (89%), Positives = 173/179 (97%), Gaps = 0/179 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETR+N+RIRVPEVRL+GPGGEQVGIVR+EDALR+A +ADLDLVEVAP+ARPPVCKIM
Sbjct 12 ISTETRINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIM 71
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQ TV+KEQKLRPKIDDHDYETKK +VVRFLEAGSKVKVTI
Sbjct 72 DYGKFKYEAAQKARESRKNQQLTVIKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 131
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARH 179
MFRGREQSRPELGYRLLQRLGADVAD GF+ETSAKQDGRNMTMVLAPH+GAKTR +A+
Sbjct 132 MFRGREQSRPELGYRLLQRLGADVADLGFVETSAKQDGRNMTMVLAPHKGAKTRVKAQE 190
>gi|15827729|ref|NP_301992.1| translation initiation factor IF-3 [Mycobacterium leprae TN]
gi|221230206|ref|YP_002503622.1| translation initiation factor IF-3 [Mycobacterium leprae Br4923]
gi|13093280|emb|CAC31775.1| initiation factor 3 [Mycobacterium leprae]
gi|219933313|emb|CAR71489.1| initiation factor 3 [Mycobacterium leprae Br4923]
Length=185
Score = 330 bits (846), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 164/185 (89%), Positives = 169/185 (92%), Gaps = 1/185 (0%)
Query 18 LIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESR 77
+IGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYE AQKARESR
Sbjct 1 MIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEVAQKARESR 60
Query 78 RNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL 137
RNQQQTVVKEQKLRPKIDDHDYETKK HVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL
Sbjct 61 RNQQQTVVKEQKLRPKIDDHDYETKKSHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLL 120
Query 138 QRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTA-GDS 196
QRLGADVADYGF+ETSAKQDGRNMTMVLAPHRGAKTRA ARHP P G A GD+
Sbjct 121 QRLGADVADYGFVETSAKQDGRNMTMVLAPHRGAKTRASARHPEVPGAGSVQDIDATGDT 180
Query 197 KAAPN 201
+P+
Sbjct 181 DGSPH 185
>gi|226306782|ref|YP_002766742.1| translation initiation factor IF-3 [Rhodococcus erythropolis
PR4]
gi|226185899|dbj|BAH34003.1| translation initiation factor IF-3 [Rhodococcus erythropolis
PR4]
Length=219
Score = 330 bits (845), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 157/179 (88%), Positives = 173/179 (97%), Gaps = 0/179 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETR+N+RIRVPEVRL+GPGGEQVGIVR+EDALR+A +ADLDLVEVAP+ARPPVCKIM
Sbjct 1 MSTETRINDRIRVPEVRLVGPGGEQVGIVRVEDALRLALEADLDLVEVAPDARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQ TV+KEQKLRPKIDDHDYETKK +VVRFLEAGSKVKVTI
Sbjct 61 DYGKFKYEAAQKARESRKNQQLTVIKEQKLRPKIDDHDYETKKRNVVRFLEAGSKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARH 179
MFRGREQSRPELGYRLLQRLGADVAD GF+ETSAKQDGRNMTMVLAPH+GAKTR +A+
Sbjct 121 MFRGREQSRPELGYRLLQRLGADVADLGFVETSAKQDGRNMTMVLAPHKGAKTRVKAQE 179
>gi|317507013|ref|ZP_07964780.1| translation initiation factor IF-3 [Segniliparus rugosus ATCC
BAA-974]
gi|316254697|gb|EFV14000.1| translation initiation factor IF-3 [Segniliparus rugosus ATCC
BAA-974]
Length=224
Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/200 (77%), Positives = 181/200 (91%), Gaps = 1/200 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETR+N+RIRVPEVRL+GPGGEQVGIVR+E+ALR+A +ADLDLVEVAP+ARPPVCKIM
Sbjct 11 ISTETRINDRIRVPEVRLVGPGGEQVGIVRVEEALRLAIEADLDLVEVAPDARPPVCKIM 70
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK++YEAAQKARESR++QQ TV+KEQKLRPKIDDHDYETKKGHVVRFL++G+KVKVTI
Sbjct 71 DYGKFRYEAAQKARESRKHQQNTVIKEQKLRPKIDDHDYETKKGHVVRFLDSGAKVKVTI 130
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELG+RLLQRLGADV+++GF+ET + DGRNMTM+LAPHRGAKTRA+A
Sbjct 131 MFRGREQSRPELGHRLLQRLGADVSEHGFVETVPRLDGRNMTMILAPHRGAKTRAKAAQQ 190
Query 181 GEPAGGPPPKPTAGDSKAAP 200
A P P A ++A+P
Sbjct 191 AAEASSGPTTP-AAQAEASP 209
>gi|183982462|ref|YP_001850753.1| initiation factor IF-3 InfC [Mycobacterium marinum M]
gi|183175788|gb|ACC40898.1| initiation factor IF-3 InfC [Mycobacterium marinum M]
Length=167
Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/157 (96%), Positives = 155/157 (99%), Gaps = 0/157 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAG 185
F+ETSAKQDGRNMTMVLAPHRGAKTRARARHP +PA
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRARARHPDDPAA 157
>gi|296394206|ref|YP_003659090.1| translation initiation factor IF-3 [Segniliparus rotundus DSM
44985]
gi|296181353|gb|ADG98259.1| translation initiation factor IF-3 [Segniliparus rotundus DSM
44985]
Length=225
Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/174 (83%), Positives = 166/174 (96%), Gaps = 0/174 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STETR+N+RIRVPEVRL+G GGEQVGIVR+E+ALR+A +ADLDLVEVAP ARPPVCKIM
Sbjct 1 MSTETRINDRIRVPEVRLVGAGGEQVGIVRVEEALRLAVEADLDLVEVAPEARPPVCKIM 60
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK++YE AQKARESR++QQ TV+KEQKLRPKIDDHDYETKKGHVVRFL+AG+KVKVTI
Sbjct 61 DYGKFRYETAQKARESRKHQQNTVIKEQKLRPKIDDHDYETKKGHVVRFLDAGAKVKVTI 120
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTR 174
MFRGREQSRPELG+RLLQRLGADV+++GF+ET + DGRNMTM+LAPHRGAKTR
Sbjct 121 MFRGREQSRPELGHRLLQRLGADVSEHGFVETVPRLDGRNMTMILAPHRGAKTR 174
>gi|254821220|ref|ZP_05226221.1| translation initiation factor IF-3 [Mycobacterium intracellulare
ATCC 13950]
Length=173
Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/157 (95%), Positives = 154/157 (99%), Gaps = 0/157 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAPNARPPVCKIMDYGK+KYEAAQKARESRRNQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKFKYEAAQKARESRRNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAG 185
F+ETSAKQDGRNMTMVLAPHRGAKTRARARHP E G
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRARARHPEEVGG 157
>gi|118466944|ref|YP_882311.1| translation initiation factor IF-3 [Mycobacterium avium 104]
gi|254775577|ref|ZP_05217093.1| translation initiation factor IF-3 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118168231|gb|ABK69128.1| translation initiation factor IF-3 [Mycobacterium avium 104]
gi|336457804|gb|EGO36798.1| translation initiation factor IF-3 [Mycobacterium avium subsp.
paratuberculosis S397]
Length=173
Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/157 (95%), Positives = 154/157 (99%), Gaps = 0/157 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAPNARPPVCKIMDYGK+KYEAAQKARESRRNQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKFKYEAAQKARESRRNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAG 185
F+ETSAKQDGRNMTMVLAPHRGAKTRARARHP P G
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRARARHPEGPGG 157
>gi|342860773|ref|ZP_08717423.1| translation initiation factor IF-3 [Mycobacterium colombiense
CECT 3035]
gi|342131797|gb|EGT85054.1| translation initiation factor IF-3 [Mycobacterium colombiense
CECT 3035]
Length=174
Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/155 (95%), Positives = 153/155 (99%), Gaps = 0/155 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAPNARPPVCKIMDYGK+KYEAAQKARESRRNQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKFKYEAAQKARESRRNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEP 183
F+ETSAKQDGRNMTMVLAPHRGAKTRA+ARHP P
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKARHPEGP 155
>gi|300787907|ref|YP_003768198.1| translation initiation factor IF-3 [Amycolatopsis mediterranei
U32]
gi|299797421|gb|ADJ47796.1| translation initiation factor IF-3 [Amycolatopsis mediterranei
U32]
Length=205
Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/184 (79%), Positives = 163/184 (89%), Gaps = 0/184 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS+ETR+N+RIRVPEVRL+GP GEQVGIVRIEDALR+A + DLDLVEVAP ARPPVCK+M
Sbjct 19 ISSETRINDRIRVPEVRLVGPAGEQVGIVRIEDALRLAQENDLDLVEVAPQARPPVCKLM 78
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
D+GK+KYE+AQKARESRRNQQ TV+KEQKLRPKID HDYETKKGHV RFL AG+KVKVTI
Sbjct 79 DFGKFKYESAQKARESRRNQQLTVIKEQKLRPKIDQHDYETKKGHVSRFLAAGNKVKVTI 138
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELGYRLLQ+L DV + GF+E+SAKQDGRNM MVLAPH+ K +A+A
Sbjct 139 MFRGREQSRPELGYRLLQKLAEDVTELGFVESSAKQDGRNMIMVLAPHKNVKPKAKAEAA 198
Query 181 GEPA 184
EP
Sbjct 199 PEPT 202
>gi|145295514|ref|YP_001138335.1| translation initiation factor IF-3 [Corynebacterium glutamicum
R]
gi|166198956|sp|A4QDY1.1|IF3_CORGB RecName: Full=Translation initiation factor IF-3
gi|140845434|dbj|BAF54433.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043416|gb|EGV39109.1| translation initiation factor IF-3 [Corynebacterium glutamicum
S9114]
Length=189
Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/172 (84%), Positives = 157/172 (92%), Gaps = 0/172 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS E R+NERIRVPEVRL+GP GEQVGIVRIEDA ++A DADLDLVEVAPNA+PPVCKIM
Sbjct 17 ISAEARINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPNAKPPVCKIM 76
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQQTVVKEQKLRPKIDDHDYETKK +V+RFLE GSKVKVTI
Sbjct 77 DYGKFKYEAAQKARESRKNQQQTVVKEQKLRPKIDDHDYETKKNNVIRFLEKGSKVKVTI 136
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAK 172
MFRGREQ+RPELGYRLL+RL DVAD+G +ET AKQDGRNMTMVL P R K
Sbjct 137 MFRGREQARPELGYRLLERLANDVADFGIVETRAKQDGRNMTMVLGPVRKGK 188
>gi|19552595|ref|NP_600597.1| translation initiation factor IF-3 [Corynebacterium glutamicum
ATCC 13032]
gi|62390263|ref|YP_225665.1| translation initiation factor IF-3 [Corynebacterium glutamicum
ATCC 13032]
gi|23821719|sp|Q8NQP8.1|IF3_CORGL RecName: Full=Translation initiation factor IF-3
gi|21324146|dbj|BAB98771.1| Translation initiation factor IF3 [Corynebacterium glutamicum
ATCC 13032]
gi|41325600|emb|CAF21389.1| TRANSLATION INITIATION FACTOR IF3 PROTEIN [Corynebacterium glutamicum
ATCC 13032]
Length=189
Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/172 (84%), Positives = 156/172 (91%), Gaps = 0/172 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS E R+NERIRVPEVRL+GP GEQVGIVRIEDA ++A DADLDLVEVAPNA+PPVCKIM
Sbjct 17 ISAEARINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPNAKPPVCKIM 76
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQQTVVKEQKLRPKIDDHDYETKK +V+RFLE GSKVKVTI
Sbjct 77 DYGKFKYEAAQKARESRKNQQQTVVKEQKLRPKIDDHDYETKKNNVIRFLEKGSKVKVTI 136
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAK 172
MFRGREQ+RPELGYRLL+RL DV D+G +ET AKQDGRNMTMVL P R K
Sbjct 137 MFRGREQARPELGYRLLERLANDVVDFGIVETRAKQDGRNMTMVLGPVRKGK 188
>gi|25028065|ref|NP_738119.1| translation initiation factor IF-3 [Corynebacterium efficiens
YS-314]
gi|23493349|dbj|BAC18319.1| putative translation initiation factor IF-3 [Corynebacterium
efficiens YS-314]
Length=225
Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/172 (83%), Positives = 156/172 (91%), Gaps = 0/172 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS E R+NERIRVPEVRL+GP GEQVGIVRIEDA ++A DADLDLVEVAP A+PPVCKIM
Sbjct 53 ISAEARINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPTAKPPVCKIM 112
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQQTVVKEQKLRPKIDDHDYETKK +V+RFLE GSKVKVTI
Sbjct 113 DYGKFKYEAAQKARESRKNQQQTVVKEQKLRPKIDDHDYETKKSNVIRFLEKGSKVKVTI 172
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAK 172
MFRGREQ+RPELGYRLL+RL DVA+YG +ET AKQDGRNMTMV+ P R K
Sbjct 173 MFRGREQARPELGYRLLERLANDVAEYGVVETRAKQDGRNMTMVIGPLRKGK 224
>gi|169629407|ref|YP_001703056.1| translation initiation factor IF-3 (InfC) [Mycobacterium abscessus
ATCC 19977]
gi|169241374|emb|CAM62402.1| Translation initiation factor IF-3 (InfC) [Mycobacterium abscessus]
gi|336441444|gb|AEI54947.1| translation initiation factor IF-3 [Mycobacterium abscessus]
Length=176
Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 143/154 (93%), Positives = 149/154 (97%), Gaps = 0/154 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP+ARPPVCKIMDYGK+KYE AQKARESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPDARPPVCKIMDYGKFKYETAQKARESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG
Sbjct 61 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGE 182
F+ETSAKQDGRNMTMVLAPHRGAKTRA+A E
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKAAQQAE 154
>gi|259505617|ref|ZP_05748519.1| translation initiation factor IF-3 [Corynebacterium efficiens
YS-314]
gi|29427498|sp|Q8FTQ2.2|IF3_COREF RecName: Full=Translation initiation factor IF-3
gi|259166782|gb|EEW51336.1| translation initiation factor IF-3 [Corynebacterium efficiens
YS-314]
Length=203
Score = 297 bits (760), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/172 (83%), Positives = 156/172 (91%), Gaps = 0/172 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS E R+NERIRVPEVRL+GP GEQVGIVRIEDA ++A DADLDLVEVAP A+PPVCKIM
Sbjct 31 ISAEARINERIRVPEVRLVGPNGEQVGIVRIEDARKLAFDADLDLVEVAPTAKPPVCKIM 90
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYEAAQKARESR+NQQQTVVKEQKLRPKIDDHDYETKK +V+RFLE GSKVKVTI
Sbjct 91 DYGKFKYEAAQKARESRKNQQQTVVKEQKLRPKIDDHDYETKKSNVIRFLEKGSKVKVTI 150
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAK 172
MFRGREQ+RPELGYRLL+RL DVA+YG +ET AKQDGRNMTMV+ P R K
Sbjct 151 MFRGREQARPELGYRLLERLANDVAEYGVVETRAKQDGRNMTMVIGPLRKGK 202
>gi|336441448|gb|AEI54949.1| translation initiation factor IF-3 [Mycobacterium bolletii]
gi|336441454|gb|AEI54952.1| translation initiation factor IF-3 [Mycobacterium massiliense]
Length=176
Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 142/149 (96%), Positives = 148/149 (99%), Gaps = 0/149 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP+ARPPVCKIMDYGK+KYE AQKARESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPDARPPVCKIMDYGKFKYETAQKARESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG
Sbjct 61 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARA 177
F+ETSAKQDGRNMTMVLAPHRGAKTRA+A
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKA 149
>gi|256379477|ref|YP_003103137.1| translation initiation factor IF-3 [Actinosynnema mirum DSM 43827]
gi|255923780|gb|ACU39291.1| translation initiation factor IF-3 [Actinosynnema mirum DSM 43827]
Length=204
Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/174 (81%), Positives = 157/174 (91%), Gaps = 0/174 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
+STE R+N+RIRVPEVRL+GP GEQVGIVRIEDALR+A ++DLDLVEVA ARPPVCK+M
Sbjct 11 VSTEPRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQESDLDLVEVAAQARPPVCKLM 70
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYE+AQKARESRRNQQ TV+KEQKLRPKID HDY+TKKGHV RFL G+KVKVTI
Sbjct 71 DYGKYKYESAQKARESRRNQQLTVIKEQKLRPKIDPHDYQTKKGHVARFLGQGNKVKVTI 130
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTR 174
MFRGREQSRPELGYRLLQRL DVA+ GF+E++ KQDGRNM MVLAPH+ KTR
Sbjct 131 MFRGREQSRPELGYRLLQRLAEDVAELGFVESNPKQDGRNMIMVLAPHKTTKTR 184
>gi|336441452|gb|AEI54951.1| translation initiation factor IF-3 [Mycobacterium immunogenum]
Length=176
Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/154 (91%), Positives = 147/154 (96%), Gaps = 0/154 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP+ARPPVCKIMDYGK+KYE A K RESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPDARPPVCKIMDYGKFKYETALKERESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGE 182
F+ETSAKQDGRNMTMVLAPHRGAKTRA+A E
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKAAQQAE 154
>gi|333990460|ref|YP_004523074.1| initiation factor IF-3 InfC [Mycobacterium sp. JDM601]
gi|333486428|gb|AEF35820.1| initiation factor IF-3 InfC [Mycobacterium sp. JDM601]
Length=177
Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/171 (86%), Positives = 156/171 (92%), Gaps = 4/171 (2%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP A+PPVCKIMDYGKYKYEAAQK RESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPTAKPPVCKIMDYGKYKYEAAQKERESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKID HDYETKKGHVVRFLEAG+KVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDPHDYETKKGHVVRFLEAGAKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAG-GPPPKPTAGDSKA 198
F+ETSAKQDGRNMTMVLAPHRGAKTRA+A E AG G P +A D+ A
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKA---AEDAGAGAKPPASAPDNAA 168
>gi|336441450|gb|AEI54950.1| translation initiation factor IF-3 [Mycobacterium chelonae]
Length=176
Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 139/149 (94%), Positives = 146/149 (98%), Gaps = 0/149 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP+ARPPVCKIMDYGK+KYE A K RESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPDARPPVCKIMDYGKFKYETALKERESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARA 177
F+ETSAKQDGRNMTMVLAPHRGAKTRA+A
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKA 149
>gi|336441446|gb|AEI54948.1| translation initiation factor IF-3 [Mycobacterium franklinii]
Length=176
Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 139/149 (94%), Positives = 146/149 (98%), Gaps = 0/149 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP+ARPPVCKIMDYGK+KYE A K RESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPDARPPVCKIMDYGKFKYETALKERESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVA+YG
Sbjct 61 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVAEYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARA 177
F+ETSAKQDGRNMTMVLAPHRGAKTRA+A
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTRAKA 149
>gi|302528048|ref|ZP_07280390.1| translation initiation factor IF-3 [Streptomyces sp. AA4]
gi|302436943|gb|EFL08759.1| translation initiation factor IF-3 [Streptomyces sp. AA4]
Length=201
Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/171 (79%), Positives = 154/171 (91%), Gaps = 0/171 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS+ETR+N+RIRVPEVRL+GP GEQVGIVRIEDALR+A +ADLDLVEVAP ARPPV K+M
Sbjct 18 ISSETRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAPQARPPVAKLM 77
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
D+GK+KYE+AQKAR+SRRNQ TV+KEQKLRPKID HDYETKKGHV RFL AG+KVKVTI
Sbjct 78 DFGKFKYESAQKARDSRRNQHLTVIKEQKLRPKIDQHDYETKKGHVSRFLAAGNKVKVTI 137
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGA 171
MFRGREQSRPELG+RLLQ+L DV + GF+E+S KQDGRNM MVLAPH+
Sbjct 138 MFRGREQSRPELGFRLLQKLADDVTELGFVESSPKQDGRNMIMVLAPHKNV 188
>gi|311742378|ref|ZP_07716187.1| translation initiation factor IF3 [Aeromicrobium marinum DSM
15272]
gi|311314006|gb|EFQ83914.1| translation initiation factor IF3 [Aeromicrobium marinum DSM
15272]
Length=225
Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 135/162 (84%), Positives = 149/162 (92%), Gaps = 0/162 (0%)
Query 6 RVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKY 65
RVNERIRVPEVRL+GPGGEQVGIVRIEDALR+AA++DLDLVEVAP ARPPVC++MDYGK+
Sbjct 2 RVNERIRVPEVRLVGPGGEQVGIVRIEDALRLAAESDLDLVEVAPTARPPVCRLMDYGKF 61
Query 66 KYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGR 125
KYEAAQKARESRRNQ TV+KE KLRPKID HDY+TKKGHVVRFL+AG KVK+TIMFRGR
Sbjct 62 KYEAAQKARESRRNQTNTVIKEMKLRPKIDQHDYDTKKGHVVRFLKAGDKVKITIMFRGR 121
Query 126 EQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAP 167
EQ RPELG+RLLQRL ADV D GFIE+ +QDGRNMTMVL P
Sbjct 122 EQHRPELGFRLLQRLAADVEDLGFIESHPRQDGRNMTMVLGP 163
>gi|284033334|ref|YP_003383265.1| translation initiation factor IF-3 [Kribbella flavida DSM 17836]
gi|283812627|gb|ADB34466.1| translation initiation factor IF-3 [Kribbella flavida DSM 17836]
Length=240
Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 140/184 (77%), Positives = 156/184 (85%), Gaps = 1/184 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
I+ E RVNERIRVPEVRL+GP GEQVGIVRIEDALR+A +ADLDLVEVA ARPPVCK+M
Sbjct 12 ITIELRVNERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLDLVEVAATARPPVCKLM 71
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
D+GKYKYE AQKARESRRNQ TV+KE KLRPKID HDYETKKGHVVRFL AG KVK+TI
Sbjct 72 DFGKYKYETAQKARESRRNQTNTVIKEMKLRPKIDPHDYETKKGHVVRFLRAGDKVKITI 131
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELG+RLLQRL DV++ GF+E+S +QDGRNM MVL PH+ K+ AR
Sbjct 132 MFRGREQSRPELGFRLLQRLAEDVSELGFVESSPRQDGRNMIMVLGPHK-KKSEARVDVE 190
Query 181 GEPA 184
E A
Sbjct 191 AEKA 194
>gi|312139882|ref|YP_004007218.1| translation initiation factor 3 infc [Rhodococcus equi 103S]
gi|325674240|ref|ZP_08153929.1| translation initiation factor IF3 [Rhodococcus equi ATCC 33707]
gi|311889221|emb|CBH48535.1| translation initiation factor 3 InfC [Rhodococcus equi 103S]
gi|325554920|gb|EGD24593.1| translation initiation factor IF3 [Rhodococcus equi ATCC 33707]
Length=173
Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 139/171 (82%), Positives = 154/171 (91%), Gaps = 3/171 (1%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+R+EDALRVA +ADLDLVEVAP+ARPPVCKIMDYGK+KYE AQKARESR+NQQQTV+KEQ
Sbjct 1 MRVEDALRVALEADLDLVEVAPDARPPVCKIMDYGKFKYETAQKARESRKNQQQTVIKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKK +V+RFLEAGSKVKVTIMFRGREQSRPELG+RLLQRLGADVAD G
Sbjct 61 KLRPKIDDHDYETKKRNVIRFLEAGSKVKVTIMFRGREQSRPELGFRLLQRLGADVADLG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEPAGGPPPKPTAGDSKAA 199
F+ETSAKQDGRNMTMVLAPH+GAKTRA+A+ E PKP AG+ A
Sbjct 121 FVETSAKQDGRNMTMVLAPHKGAKTRAKAQ---EEVQAAQPKPAAGEDGTA 168
>gi|331697626|ref|YP_004333865.1| translation initiation factor IF-3 [Pseudonocardia dioxanivorans
CB1190]
gi|326952315|gb|AEA26012.1| Translation initiation factor IF-3 [Pseudonocardia dioxanivorans
CB1190]
Length=250
Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/167 (81%), Positives = 152/167 (92%), Gaps = 0/167 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
ISTETR+N+RIRVPEVRL+GP GEQVGIVRIEDALR+A +A+LDLVEVA ARPPVCK+M
Sbjct 49 ISTETRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQEAELDLVEVAAQARPPVCKLM 108
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
D+GK+KYE+AQKARESRRNQQ TV+KEQKLRPKID HDYETKK +VVRFLE G+KVKVTI
Sbjct 109 DFGKFKYESAQKARESRRNQQLTVIKEQKLRPKIDTHDYETKKRNVVRFLEGGNKVKVTI 168
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAP 167
MFRGREQSRPELG+RLLQRL DV D G +E + KQDGRNMTMV+AP
Sbjct 169 MFRGREQSRPELGFRLLQRLAEDVVDLGVVEAAPKQDGRNMTMVIAP 215
>gi|145224126|ref|YP_001134804.1| initiation factor 3 [Mycobacterium gilvum PYR-GCK]
gi|145216612|gb|ABP46016.1| bacterial translation initiation factor 3 (bIF-3) [Mycobacterium
gilvum PYR-GCK]
Length=175
Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/146 (94%), Positives = 144/146 (99%), Gaps = 0/146 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+RIEDALRVAADADLDLVEVAP+A+PPVCKIMDYGK+KYE AQKARESR+NQQQTVVKEQ
Sbjct 1 MRIEDALRVAADADLDLVEVAPDAKPPVCKIMDYGKFKYETAQKARESRKNQQQTVVKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKID HDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELG+RLLQRLGADVADYG
Sbjct 61 KLRPKIDPHDYETKKGHVIRFLEAGSKVKVTIMFRGREQSRPELGFRLLQRLGADVADYG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTR 174
F+ETSAKQDGRNMTMVLAPHRGAKTR
Sbjct 121 FVETSAKQDGRNMTMVLAPHRGAKTR 146
>gi|340529480|gb|AEK44685.1| translation initiation factor IF-3 [Amycolatopsis mediterranei
S699]
Length=175
Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 134/171 (79%), Positives = 151/171 (89%), Gaps = 0/171 (0%)
Query 13 VPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQK 72
+PEVRL+GP GEQVGIVRIEDALR+A + DLDLVEVAP ARPPVCK+MD+GK+KYE+AQK
Sbjct 1 MPEVRLVGPAGEQVGIVRIEDALRLAQENDLDLVEVAPQARPPVCKLMDFGKFKYESAQK 60
Query 73 ARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPEL 132
ARESRRNQQ TV+KEQKLRPKID HDYETKKGHV RFL AG+KVKVTIMFRGREQSRPEL
Sbjct 61 ARESRRNQQLTVIKEQKLRPKIDQHDYETKKGHVSRFLAAGNKVKVTIMFRGREQSRPEL 120
Query 133 GYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHPGEP 183
GYRLLQ+L DV + GF+E+SAKQDGRNM MVLAPH+ K +A+A EP
Sbjct 121 GYRLLQKLAEDVTELGFVESSAKQDGRNMIMVLAPHKNVKPKAKAEAAPEP 171
>gi|237785422|ref|YP_002906127.1| translation initiation factor IF-3 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758334|gb|ACR17584.1| translation initiation factor IF-3 [Corynebacterium kroppenstedtii
DSM 44385]
Length=183
Score = 283 bits (725), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 139/169 (83%), Positives = 150/169 (89%), Gaps = 0/169 (0%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS E R+NERIRVPEVRL+GP GEQVGIVR +DA ++A DADLDLVEVAP A+PPV KIM
Sbjct 10 ISAEARINERIRVPEVRLVGPSGEQVGIVRTDDARKLAYDADLDLVEVAPRAKPPVAKIM 69
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGKYKYE AQKARESRRNQQQTVVKEQK RPKIDDHDYETKKG+VVRFLE GSKVKVTI
Sbjct 70 DYGKYKYEQAQKARESRRNQQQTVVKEQKFRPKIDDHDYETKKGNVVRFLEKGSKVKVTI 129
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHR 169
MFRGREQSRPELG+RLL+RL DVAD G +E+ KQDGRNMTMVL P R
Sbjct 130 MFRGREQSRPELGFRLLERLADDVADAGVVESRPKQDGRNMTMVLGPVR 178
>gi|258654266|ref|YP_003203422.1| translation initiation factor IF-3 [Nakamurella multipartita
DSM 44233]
gi|258557491|gb|ACV80433.1| translation initiation factor IF-3 [Nakamurella multipartita
DSM 44233]
Length=227
Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/184 (75%), Positives = 159/184 (87%), Gaps = 5/184 (2%)
Query 1 ISTETRVNERIRVPEVRLIGPGGEQVGIVRIEDALRVAADADLDLVEVAPNARPPVCKIM 60
IS E R+N+RIRVPEVRL+G GEQVGIV I +ALR+A +ADLDLVEVAP+ARPPVCK+M
Sbjct 46 ISVEPRINDRIRVPEVRLVGSEGEQVGIVPIGEALRMAQEADLDLVEVAPDARPPVCKLM 105
Query 61 DYGKYKYEAAQKARESRRNQQQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTI 120
DYGK+KYE+AQKARE+RRNQ TV+KE KLRPKID HDYETKKGHVVRFL+AG KVKVTI
Sbjct 106 DYGKFKYESAQKAREARRNQVLTVIKEMKLRPKIDSHDYETKKGHVVRFLKAGDKVKVTI 165
Query 121 MFRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRARARHP 180
MFRGREQSRPELG+RLLQRL ADVA+ GF+E++ KQDGRNM MVLAPH+ + R
Sbjct 166 MFRGREQSRPELGFRLLQRLSADVAELGFVESAPKQDGRNMIMVLAPHKQVRPRQ----- 220
Query 181 GEPA 184
G+PA
Sbjct 221 GQPA 224
>gi|54023882|ref|YP_118124.1| putative translation initiation factor IF-3 [Nocardia farcinica
IFM 10152]
gi|54015390|dbj|BAD56760.1| putative translation initiation factor IF-3 [Nocardia farcinica
IFM 10152]
Length=178
Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/151 (88%), Positives = 144/151 (96%), Gaps = 0/151 (0%)
Query 29 VRIEDALRVAADADLDLVEVAPNARPPVCKIMDYGKYKYEAAQKARESRRNQQQTVVKEQ 88
+R+EDALRVA +ADLDLVEVAP+ARPPVCKIMDYGK+KYE AQKARESR+NQQQTV+KEQ
Sbjct 1 MRVEDALRVAMEADLDLVEVAPDARPPVCKIMDYGKFKYETAQKARESRKNQQQTVIKEQ 60
Query 89 KLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGADVADYG 148
KLRPKIDDHDYETKKGHV+RFLEAGSKVKVTIMFRGREQSRPELGYRLLQRL DVAD G
Sbjct 61 KLRPKIDDHDYETKKGHVMRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLAGDVADLG 120
Query 149 FIETSAKQDGRNMTMVLAPHRGAKTRARARH 179
F+ETSAKQDGRNMTMVLAPH+GAKTR +A+
Sbjct 121 FVETSAKQDGRNMTMVLAPHKGAKTRVKAQQ 151
Lambda K H
0.315 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 217214446392
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40