BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1642
Length=64
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608780|ref|NP_216158.1| 50S ribosomal protein L35 [Mycobact... 127 6e-28
gi|240168027|ref|ZP_04746686.1| 50S ribosomal protein L35 [Mycob... 122 2e-26
gi|118617267|ref|YP_905599.1| 50S ribosomal protein L35 [Mycobac... 118 3e-25
gi|41407451|ref|NP_960287.1| 50S ribosomal protein L35 [Mycobact... 117 4e-25
gi|296164541|ref|ZP_06847112.1| 50S ribosomal protein L35 [Mycob... 117 8e-25
gi|15827730|ref|NP_301993.1| 50S ribosomal protein L35 [Mycobact... 116 9e-25
gi|254821221|ref|ZP_05226222.1| 50S ribosomal protein L35 [Mycob... 116 1e-24
gi|342860772|ref|ZP_08717422.1| 50S ribosomal protein L35 [Mycob... 115 2e-24
gi|120404301|ref|YP_954130.1| 50S ribosomal protein L35 [Mycobac... 114 6e-24
gi|145224125|ref|YP_001134803.1| 50S ribosomal protein L35 [Myco... 113 1e-23
gi|333990461|ref|YP_004523075.1| 50S ribosomal protein L35 RpmL ... 112 1e-23
gi|336440982|gb|AEI54716.1| 50S ribosomal protein L35 [Mycobacte... 111 3e-23
gi|118473237|ref|YP_888085.1| 50S ribosomal protein L35 [Mycobac... 110 9e-23
gi|336440984|gb|AEI54717.1| 50S ribosomal protein L35 [Mycobacte... 109 1e-22
gi|169629408|ref|YP_001703057.1| 50S ribosomal protein L35 [Myco... 108 2e-22
gi|336440978|gb|AEI54714.1| 50S ribosomal protein L35 [Mycobacte... 108 2e-22
gi|108799946|ref|YP_640143.1| 50S ribosomal protein L35 [Mycobac... 107 4e-22
gi|343928314|ref|ZP_08767766.1| 50S ribosomal protein L35 [Gordo... 97.8 5e-19
gi|262202746|ref|YP_003273954.1| 50S ribosomal protein L35 [Gord... 93.6 1e-17
gi|54023883|ref|YP_118125.1| 50S ribosomal protein L35 [Nocardia... 92.8 1e-17
gi|296270014|ref|YP_003652646.1| 50S ribosomal protein L35 [Ther... 92.4 2e-17
gi|319949971|ref|ZP_08023960.1| 50S ribosomal protein L35 [Dietz... 88.2 4e-16
gi|297155953|gb|ADI05665.1| 50S ribosomal protein L35 [Streptomy... 87.4 6e-16
gi|345010531|ref|YP_004812885.1| 50S ribosomal protein L35 [Stre... 87.0 8e-16
gi|326382698|ref|ZP_08204389.1| 50S ribosomal protein L35 [Gordo... 87.0 8e-16
gi|269126374|ref|YP_003299744.1| 50S ribosomal protein L35 [Ther... 87.0 9e-16
gi|269956117|ref|YP_003325906.1| 50S ribosomal protein L35 [Xyla... 85.9 2e-15
gi|302541295|ref|ZP_07293637.1| ribosomal protein L35 [Streptomy... 84.7 4e-15
gi|256832336|ref|YP_003161063.1| 50S ribosomal protein L35 [Jone... 84.3 5e-15
gi|269795536|ref|YP_003314991.1| 50S ribosomal protein L35P [San... 83.6 1e-14
gi|311894942|dbj|BAJ27350.1| putative ribosomal protein L35 [Kit... 83.2 1e-14
gi|333919171|ref|YP_004492752.1| 50S ribosomal protein L35 [Amyc... 82.8 1e-14
gi|336321067|ref|YP_004601035.1| 50S ribosomal protein L35 [Cell... 82.8 2e-14
gi|344998624|ref|YP_004801478.1| 50S ribosomal protein L35 [Stre... 82.8 2e-14
gi|111017976|ref|YP_700948.1| 50S ribosomal protein L35 [Rhodoco... 82.4 2e-14
gi|296394205|ref|YP_003659089.1| 50S ribosomal protein L35 [Segn... 82.4 2e-14
gi|226306781|ref|YP_002766741.1| 50S ribosomal protein L35 [Rhod... 82.0 3e-14
gi|334336836|ref|YP_004541988.1| 50S ribosomal protein L35 [Isop... 81.6 3e-14
gi|312139881|ref|YP_004007217.1| 50S ribosomal protein l35 rpmi ... 81.6 4e-14
gi|332670157|ref|YP_004453165.1| 50S ribosomal protein L35 [Cell... 81.6 4e-14
gi|296129472|ref|YP_003636722.1| ribosomal protein L35 [Cellulom... 81.3 4e-14
gi|111224588|ref|YP_715382.1| 50S ribosomal protein L35 [Frankia... 81.3 4e-14
gi|117928475|ref|YP_873026.1| 50S ribosomal protein L35 [Acidoth... 80.9 5e-14
gi|227875289|ref|ZP_03993431.1| ribosomal protein L35 [Mobiluncu... 80.5 8e-14
gi|237785423|ref|YP_002906128.1| 50S ribosomal protein L35 [Cory... 79.7 1e-13
gi|182439699|ref|YP_001827418.1| 50S ribosomal protein L35 [Stre... 79.7 1e-13
gi|294811659|ref|ZP_06770302.1| 50S ribosomal protein L35 [Strep... 79.3 2e-13
gi|86741867|ref|YP_482267.1| 50S ribosomal protein L35 [Frankia ... 79.0 2e-13
gi|163839502|ref|YP_001623907.1| 50S ribosomal protein L35 [Reni... 78.2 3e-13
gi|296140119|ref|YP_003647362.1| 50S ribosomal protein L35 [Tsuk... 78.2 4e-13
>gi|15608780|ref|NP_216158.1| 50S ribosomal protein L35 [Mycobacterium tuberculosis H37Rv]
gi|15841098|ref|NP_336135.1| 50S ribosomal protein L35 [Mycobacterium tuberculosis CDC1551]
gi|31792829|ref|NP_855322.1| 50S ribosomal protein L35 [Mycobacterium bovis AF2122/97]
83 more sequence titles
Length=64
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|240168027|ref|ZP_04746686.1| 50S ribosomal protein L35 [Mycobacterium kansasii ATCC 12478]
Length=64
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/64 (96%), Positives = 62/64 (97%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRL+GRT VAANDTKRV S
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLEGRTAVAANDTKRVNS 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|118617267|ref|YP_905599.1| 50S ribosomal protein L35 [Mycobacterium ulcerans Agy99]
gi|183982463|ref|YP_001850754.1| 50S ribosomal protein L35, RpmL [Mycobacterium marinum M]
gi|166231203|sp|A0PP59.1|RL35_MYCUA RecName: Full=50S ribosomal protein L35
gi|226725038|sp|B2HR13.1|RL35_MYCMM RecName: Full=50S ribosomal protein L35
gi|118569377|gb|ABL04128.1| 50S ribosomal protein L35, RpmL [Mycobacterium ulcerans Agy99]
gi|183175789|gb|ACC40899.1| 50S ribosomal protein L35, RpmL [Mycobacterium marinum M]
Length=64
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/64 (94%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHK S RTRRLDGRT VAANDTKRV S
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKSSKRTRRLDGRTTVAANDTKRVKS 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|41407451|ref|NP_960287.1| 50S ribosomal protein L35 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466256|ref|YP_882310.1| 50S ribosomal protein L35 [Mycobacterium avium 104]
gi|254775576|ref|ZP_05217092.1| 50S ribosomal protein L35 [Mycobacterium avium subsp. avium ATCC
25291]
gi|54036275|sp|Q740J7.1|RL35_MYCPA RecName: Full=50S ribosomal protein L35
gi|166231197|sp|A0QHC2.1|RL35_MYCA1 RecName: Full=50S ribosomal protein L35
gi|41395803|gb|AAS03670.1| RpmI [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167543|gb|ABK68440.1| ribosomal protein L35 [Mycobacterium avium 104]
gi|336457805|gb|EGO36799.1| ribosomal protein L35 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=64
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 61/64 (96%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQK NRRHLLEHKP+TRTRRL+GRT V+ANDTKRV S
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKTNRRHLLEHKPTTRTRRLEGRTTVSANDTKRVNS 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|296164541|ref|ZP_06847112.1| 50S ribosomal protein L35 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900141|gb|EFG79576.1| 50S ribosomal protein L35 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=64
Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 61/64 (96%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHK STRTRRL+GRT V+ANDTKRV +
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKSSTRTRRLEGRTTVSANDTKRVNA 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|15827730|ref|NP_301993.1| 50S ribosomal protein L35 [Mycobacterium leprae TN]
gi|221230207|ref|YP_002503623.1| 50S ribosomal protein L35 [Mycobacterium leprae Br4923]
gi|13633839|sp|Q9CC21.1|RL35_MYCLE RecName: Full=50S ribosomal protein L35
gi|254802462|sp|B8ZRJ6.1|RL35_MYCLB RecName: Full=50S ribosomal protein L35
gi|13093281|emb|CAC31776.1| 50S ribosomal protein L35 [Mycobacterium leprae]
gi|219933314|emb|CAR71490.1| 50S ribosomal protein L35 [Mycobacterium leprae Br4923]
Length=64
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHL EHKPSTRTRRLDG T V+ANDT+RV S
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLFEHKPSTRTRRLDGHTRVSANDTQRVNS 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|254821221|ref|ZP_05226222.1| 50S ribosomal protein L35 [Mycobacterium intracellulare ATCC
13950]
Length=64
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/64 (90%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKP+ RTRRLDGRTVVAAND +R+
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTVVAANDAQRINR 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|342860772|ref|ZP_08717422.1| 50S ribosomal protein L35 [Mycobacterium colombiense CECT 3035]
gi|342131796|gb|EGT85053.1| 50S ribosomal protein L35 [Mycobacterium colombiense CECT 3035]
Length=64
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/64 (90%), Positives = 59/64 (93%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQ+ NRRHLLEHKPS RTRRLDGR V+ANDTKRV S
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQQTNRRHLLEHKPSKRTRRLDGRITVSANDTKRVNS 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|120404301|ref|YP_954130.1| 50S ribosomal protein L35 [Mycobacterium vanbaalenii PYR-1]
gi|166231204|sp|A1TAC4.1|RL35_MYCVP RecName: Full=50S ribosomal protein L35
gi|119957119|gb|ABM14124.1| LSU ribosomal protein L35P [Mycobacterium vanbaalenii PYR-1]
Length=64
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/64 (88%), Positives = 59/64 (93%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFR TG+GK+VRQKANRRHLLEHKP+ RTRRLDGRTVVAAND KRV
Sbjct 1 MPKAKTHSGASKRFRTTGSGKVVRQKANRRHLLEHKPTKRTRRLDGRTVVAANDVKRVKK 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|145224125|ref|YP_001134803.1| 50S ribosomal protein L35 [Mycobacterium gilvum PYR-GCK]
gi|315444461|ref|YP_004077340.1| 50S ribosomal protein L35P [Mycobacterium sp. Spyr1]
gi|189042776|sp|A4T9V0.1|RL35_MYCGI RecName: Full=50S ribosomal protein L35
gi|145216611|gb|ABP46015.1| LSU ribosomal protein L35P [Mycobacterium gilvum PYR-GCK]
gi|315262764|gb|ADT99505.1| LSU ribosomal protein L35P [Mycobacterium sp. Spyr1]
Length=64
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/64 (88%), Positives = 59/64 (93%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFR+TGTGKIVRQKANRRHLLEHK + RTRRLDGRTVVA ND KRVT
Sbjct 1 MPKAKTHSGASKRFRKTGTGKIVRQKANRRHLLEHKATKRTRRLDGRTVVAPNDVKRVTK 60
Query 61 LLNG 64
+LNG
Sbjct 61 MLNG 64
>gi|333990461|ref|YP_004523075.1| 50S ribosomal protein L35 RpmL [Mycobacterium sp. JDM601]
gi|333486429|gb|AEF35821.1| 50S ribosomal protein L35 RpmL [Mycobacterium sp. JDM601]
Length=64
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/64 (90%), Positives = 58/64 (91%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRL GRT VAA D KRV
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLAGRTEVAAADAKRVNK 60
Query 61 LLNG 64
+LNG
Sbjct 61 MLNG 64
>gi|336440982|gb|AEI54716.1| 50S ribosomal protein L35 [Mycobacterium chelonae]
Length=64
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/64 (86%), Positives = 58/64 (91%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFR TG+GKIVRQKANRRHLLEHKP+TRTRRLDGR VVA NDTKRV
Sbjct 1 MPKAKTHSGASKRFRTTGSGKIVRQKANRRHLLEHKPTTRTRRLDGRAVVAENDTKRVKK 60
Query 61 LLNG 64
+L G
Sbjct 61 MLTG 64
>gi|118473237|ref|YP_888085.1| 50S ribosomal protein L35 [Mycobacterium smegmatis str. MC2 155]
gi|166231199|sp|A0QYU7.1|RL35_MYCS2 RecName: Full=50S ribosomal protein L35
gi|118174524|gb|ABK75420.1| ribosomal protein L35 [Mycobacterium smegmatis str. MC2 155]
Length=64
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/64 (85%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKP+ RTRRLDGRT V+A D R+
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINK 60
Query 61 LLNG 64
LLNG
Sbjct 61 LLNG 64
>gi|336440984|gb|AEI54717.1| 50S ribosomal protein L35 [Mycobacterium immunogenum]
Length=64
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/64 (85%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFR TG+GKIVRQKANRRHLLEHKP+TRTRRLDGR VVA ND KRV
Sbjct 1 MPKAKTHSGASKRFRTTGSGKIVRQKANRRHLLEHKPTTRTRRLDGRAVVAENDAKRVKK 60
Query 61 LLNG 64
+L G
Sbjct 61 MLAG 64
>gi|169629408|ref|YP_001703057.1| 50S ribosomal protein L35 [Mycobacterium abscessus ATCC 19977]
gi|226725036|sp|B1MAY2.1|RL35_MYCA9 RecName: Full=50S ribosomal protein L35
gi|169241375|emb|CAM62403.1| 50S ribosomal protein L35 [Mycobacterium abscessus]
gi|336440976|gb|AEI54713.1| 50S ribosomal protein L35 [Mycobacterium abscessus]
gi|336440980|gb|AEI54715.1| 50S ribosomal protein L35 [Mycobacterium bolletii]
gi|336440986|gb|AEI54718.1| 50S ribosomal protein L35 [Mycobacterium massiliense]
Length=64
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/64 (83%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFR TG+GKIVRQKANRRHLLEHKP++RTRRLDGR VVA ND KRV
Sbjct 1 MPKAKTHSGASKRFRTTGSGKIVRQKANRRHLLEHKPTSRTRRLDGRAVVAENDAKRVKK 60
Query 61 LLNG 64
+L G
Sbjct 61 MLTG 64
>gi|336440978|gb|AEI54714.1| 50S ribosomal protein L35 [Mycobacterium franklinii]
Length=64
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/64 (83%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFR TG+GKIVRQKANRRHLLEHKP++RTRRLDGR VVA ND KRV
Sbjct 1 MPKAKTHSGASKRFRTTGSGKIVRQKANRRHLLEHKPTSRTRRLDGRVVVAENDAKRVKK 60
Query 61 LLNG 64
+L G
Sbjct 61 MLAG 64
>gi|108799946|ref|YP_640143.1| 50S ribosomal protein L35 [Mycobacterium sp. MCS]
gi|119869056|ref|YP_939008.1| 50S ribosomal protein L35 [Mycobacterium sp. KMS]
gi|126435574|ref|YP_001071265.1| 50S ribosomal protein L35 [Mycobacterium sp. JLS]
6 more sequence titles
Length=64
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/64 (82%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPKAKTHSGASKRFRRTGTGKIVRQKANRRHL+EHKP+ RTRRL GRT V+AND R+
Sbjct 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLMEHKPTKRTRRLAGRTQVSANDAPRINK 60
Query 61 LLNG 64
+LNG
Sbjct 61 MLNG 64
>gi|343928314|ref|ZP_08767766.1| 50S ribosomal protein L35 [Gordonia alkanivorans NBRC 16433]
gi|343761784|dbj|GAA14692.1| 50S ribosomal protein L35 [Gordonia alkanivorans NBRC 16433]
Length=64
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/63 (75%), Positives = 53/63 (85%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK+KTH G +KRF+ TG+GKIVRQKANRRHLLEHKPS RTRRLDG TVV+ ND R+
Sbjct 1 MPKSKTHKGTAKRFKVTGSGKIVRQKANRRHLLEHKPSKRTRRLDGTTVVSENDAPRIKR 60
Query 61 LLN 63
LLN
Sbjct 61 LLN 63
>gi|262202746|ref|YP_003273954.1| 50S ribosomal protein L35 [Gordonia bronchialis DSM 43247]
gi|262086093|gb|ACY22061.1| ribosomal protein L35 [Gordonia bronchialis DSM 43247]
Length=64
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/63 (74%), Positives = 52/63 (83%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK+KTH G +KRF+ TG+GKIVRQKANRRHLLEHK S RTRRLDG TVV+ ND R+
Sbjct 1 MPKSKTHKGTAKRFKVTGSGKIVRQKANRRHLLEHKSSRRTRRLDGTTVVSENDAPRIKR 60
Query 61 LLN 63
LLN
Sbjct 61 LLN 63
>gi|54023883|ref|YP_118125.1| 50S ribosomal protein L35 [Nocardia farcinica IFM 10152]
gi|81680171|sp|Q5YYI0.1|RL35_NOCFA RecName: Full=50S ribosomal protein L35
gi|54015391|dbj|BAD56761.1| putative ribosomal protein L35 [Nocardia farcinica IFM 10152]
Length=64
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/62 (73%), Positives = 52/62 (84%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK K+HSGASKRF+ +G GK++RQ+ANRRHLLEHKPS RTRRLDG VVAA D +RV
Sbjct 1 MPKMKSHSGASKRFKVSGKGKLLRQQANRRHLLEHKPSRRTRRLDGTEVVAAADVRRVKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|296270014|ref|YP_003652646.1| 50S ribosomal protein L35 [Thermobispora bispora DSM 43833]
gi|296092801|gb|ADG88753.1| ribosomal protein L35 [Thermobispora bispora DSM 43833]
Length=64
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/62 (73%), Positives = 52/62 (84%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TG+GKI+R++ANR+HL EHKPSTRTRRL G VV+A DTK+V
Sbjct 1 MPKMKTHSGAKKRFRLTGSGKIIRRRANRQHLFEHKPSTRTRRLQGVVVVSAADTKKVRK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|319949971|ref|ZP_08023960.1| 50S ribosomal protein L35 [Dietzia cinnamea P4]
gi|319436367|gb|EFV91498.1| 50S ribosomal protein L35 [Dietzia cinnamea P4]
Length=64
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/62 (68%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTH G +KRFR+TGTGK+VRQ+ANRRH++E KP+ RTRRLDGRT VA D R+
Sbjct 1 MPKMKTHKGTAKRFRKTGTGKLVRQQANRRHIMEKKPTKRTRRLDGRTDVAPADVPRIKR 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|297155953|gb|ADI05665.1| 50S ribosomal protein L35 [Streptomyces bingchenggensis BCW-1]
Length=64
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/63 (67%), Positives = 51/63 (81%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ TG+GK++RQ+A RRHLLEHKPST TRRL G+T +A D K++
Sbjct 1 MPKNKTHSGASKRFKLTGSGKVMRQRAGRRHLLEHKPSTLTRRLAGKTEMAPADAKKIKK 60
Query 61 LLN 63
LL
Sbjct 61 LLG 63
>gi|345010531|ref|YP_004812885.1| 50S ribosomal protein L35 [Streptomyces violaceusniger Tu 4113]
gi|344036880|gb|AEM82605.1| 50S ribosomal protein L35 [Streptomyces violaceusniger Tu 4113]
Length=64
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/63 (67%), Positives = 50/63 (80%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ TG+GK+VRQ+A RRHLLEHKPST TRRL G+ +A D K++
Sbjct 1 MPKNKTHSGASKRFKLTGSGKVVRQRAGRRHLLEHKPSTLTRRLAGKVELAPADAKKIKK 60
Query 61 LLN 63
LL
Sbjct 61 LLG 63
>gi|326382698|ref|ZP_08204389.1| 50S ribosomal protein L35 [Gordonia neofelifaecis NRRL B-59395]
gi|326198817|gb|EGD56000.1| 50S ribosomal protein L35 [Gordonia neofelifaecis NRRL B-59395]
Length=64
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/63 (69%), Positives = 50/63 (80%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK+KTH G +KRF+ TG+GKIVRQKA +RHLLEHK S TRRLDG TVV+ ND R+
Sbjct 1 MPKSKTHKGTAKRFKVTGSGKIVRQKAGKRHLLEHKSSRVTRRLDGTTVVSENDAPRIKR 60
Query 61 LLN 63
LLN
Sbjct 61 LLN 63
>gi|269126374|ref|YP_003299744.1| 50S ribosomal protein L35 [Thermomonospora curvata DSM 43183]
gi|268311332|gb|ACY97706.1| ribosomal protein L35 [Thermomonospora curvata DSM 43183]
Length=71
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/62 (70%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRF+ TG+GK+ R++ANR HLLEHKPS RTRRL GR VVA DTK +
Sbjct 8 MPKTKTHSGAKKRFKLTGSGKVTRRRANRNHLLEHKPSKRTRRLAGRVVVADADTKMIKK 67
Query 61 LL 62
LL
Sbjct 68 LL 69
>gi|269956117|ref|YP_003325906.1| 50S ribosomal protein L35 [Xylanimonas cellulosilytica DSM 15894]
gi|269304798|gb|ACZ30348.1| ribosomal protein L35 [Xylanimonas cellulosilytica DSM 15894]
Length=64
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/62 (68%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TG+GK++R++AN RHLLEHKPSTRTRRL VVA D K++
Sbjct 1 MPKNKTHSGAKKRFRITGSGKVMREQANARHLLEHKPSTRTRRLAQDQVVAPADVKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|302541295|ref|ZP_07293637.1| ribosomal protein L35 [Streptomyces hygroscopicus ATCC 53653]
gi|302458913|gb|EFL22006.1| ribosomal protein L35 [Streptomyces himastatinicus ATCC 53653]
Length=64
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/63 (64%), Positives = 50/63 (80%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRF+ TG+GK++RQ+A RRHLLEHKPST TRRL+G+ +A D K++
Sbjct 1 MPKNKTHSGARKRFKVTGSGKVMRQRAGRRHLLEHKPSTLTRRLEGKVEMAPADAKKIKK 60
Query 61 LLN 63
LL
Sbjct 61 LLG 63
>gi|256832336|ref|YP_003161063.1| 50S ribosomal protein L35 [Jonesia denitrificans DSM 20603]
gi|256685867|gb|ACV08760.1| ribosomal protein L35 [Jonesia denitrificans DSM 20603]
Length=64
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TG+GKI+R++AN+RHLLEHK STRTRRL VV+ D K++
Sbjct 1 MPKNKTHSGAKKRFRVTGSGKIMREQANKRHLLEHKSSTRTRRLSSDQVVSDADVKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|269795536|ref|YP_003314991.1| 50S ribosomal protein L35P [Sanguibacter keddieii DSM 10542]
gi|269097721|gb|ACZ22157.1| LSU ribosomal protein L35P [Sanguibacter keddieii DSM 10542]
Length=64
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/62 (65%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TG+GK++R++AN+RHLLEHK S R RRL G VV+A D K++
Sbjct 1 MPKNKTHSGAKKRFRITGSGKVMREQANKRHLLEHKSSRRKRRLSGDLVVSAADVKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|311894942|dbj|BAJ27350.1| putative ribosomal protein L35 [Kitasatospora setae KM-6054]
Length=64
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ TG+GK++R++A RRHLLEHKPST TR+L G +A D K++
Sbjct 1 MPKQKTHSGASKRFKITGSGKVLRERAGRRHLLEHKPSTLTRKLAGTVELAPGDAKKIKK 60
Query 61 LLN 63
LL
Sbjct 61 LLG 63
>gi|333919171|ref|YP_004492752.1| 50S ribosomal protein L35 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481392|gb|AEF39952.1| 50S ribosomal protein L35 [Amycolicicoccus subflavus DQS3-9A1]
Length=64
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ +G GK++RQ+ANRRHLLEHK S RTRRL+G V+ ND RV
Sbjct 1 MPKNKTHSGASKRFKVSGGGKLLRQRANRRHLLEHKSSHRTRRLEGTVTVSDNDAPRVKR 60
Query 61 LL 62
+L
Sbjct 61 ML 62
>gi|336321067|ref|YP_004601035.1| 50S ribosomal protein L35 [Cellvibrio gilvus ATCC 13127]
gi|336104648|gb|AEI12467.1| ribosomal protein L35 [Cellvibrio gilvus ATCC 13127]
Length=64
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TGTGK++R++AN RHLLEHK S RTRR+ G VV+A DT ++
Sbjct 1 MPKNKTHSGAKKRFRVTGTGKVMREQANGRHLLEHKSSRRTRRIAGDVVVSAADTPKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|344998624|ref|YP_004801478.1| 50S ribosomal protein L35 [Streptomyces sp. SirexAA-E]
gi|344314250|gb|AEN08938.1| ribosomal protein L35 [Streptomyces sp. SirexAA-E]
Length=64
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/62 (65%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ TG+GK++R+KA +RHLLEHK S +TR L G TVVA D K++
Sbjct 1 MPKNKTHSGASKRFKITGSGKVLREKAGKRHLLEHKSSKKTRSLTGTTVVAPADAKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|111017976|ref|YP_700948.1| 50S ribosomal protein L35 [Rhodococcus jostii RHA1]
gi|226360107|ref|YP_002777885.1| 50S ribosomal protein L35 [Rhodococcus opacus B4]
gi|118573019|sp|Q0SI46.1|RL35_RHOSR RecName: Full=50S ribosomal protein L35
gi|254802467|sp|C1AT08.1|RL35_RHOOB RecName: Full=50S ribosomal protein L35
gi|110817506|gb|ABG92790.1| 50S ribosomal protein L35 [Rhodococcus jostii RHA1]
gi|226238592|dbj|BAH48940.1| 50S ribosomal protein L35 [Rhodococcus opacus B4]
Length=64
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/63 (64%), Positives = 50/63 (80%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK+KTHSG +KRF+ +G+GKI+RQKA RRHLLEHK + TRRLDG VV+ DT R+
Sbjct 1 MPKSKTHSGTAKRFKVSGSGKILRQKAGRRHLLEHKATKVTRRLDGVAVVSKADTPRIKR 60
Query 61 LLN 63
LL+
Sbjct 61 LLD 63
>gi|296394205|ref|YP_003659089.1| 50S ribosomal protein L35 [Segniliparus rotundus DSM 44985]
gi|296181352|gb|ADG98258.1| ribosomal protein L35 [Segniliparus rotundus DSM 44985]
Length=64
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/62 (70%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ TG+GK+VRQ+A +RH LE KP+T TRRLDG VAA D KRV
Sbjct 1 MPKNKTHSGASKRFKVTGSGKLVRQQAGKRHNLEVKPTTLTRRLDGVVDVAAPDVKRVKR 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|226306781|ref|YP_002766741.1| 50S ribosomal protein L35 [Rhodococcus erythropolis PR4]
gi|229492709|ref|ZP_04386510.1| ribosomal protein L35 [Rhodococcus erythropolis SK121]
gi|259647410|sp|C1A067.1|RL35_RHOE4 RecName: Full=50S ribosomal protein L35
gi|226185898|dbj|BAH34002.1| 50S ribosomal protein L35 [Rhodococcus erythropolis PR4]
gi|229320368|gb|EEN86188.1| ribosomal protein L35 [Rhodococcus erythropolis SK121]
Length=64
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK K+HSGASKRF+ +G+GK++RQKA RRHLLEHK S TRRLDG VV+ +D R+
Sbjct 1 MPKMKSHSGASKRFKVSGSGKLMRQKAGRRHLLEHKSSRVTRRLDGVAVVSPDDAPRIKR 60
Query 61 LLN 63
+L
Sbjct 61 MLG 63
>gi|334336836|ref|YP_004541988.1| 50S ribosomal protein L35 [Isoptericola variabilis 225]
gi|334107204|gb|AEG44094.1| 50S ribosomal protein L35 [Isoptericola variabilis 225]
Length=64
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/62 (63%), Positives = 48/62 (78%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TG+GK++R++ANRRHL EHKP+TRTRRL V+ D K++
Sbjct 1 MPKNKTHSGAKKRFRVTGSGKVMREQANRRHLFEHKPTTRTRRLAMDQEVSQADVKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|312139881|ref|YP_004007217.1| 50S ribosomal protein l35 rpmi [Rhodococcus equi 103S]
gi|325674241|ref|ZP_08153930.1| 50S ribosomal protein L35 [Rhodococcus equi ATCC 33707]
gi|311889220|emb|CBH48534.1| 50S ribosomal protein L35 RpmI [Rhodococcus equi 103S]
gi|325554921|gb|EGD24594.1| 50S ribosomal protein L35 [Rhodococcus equi ATCC 33707]
Length=64
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/63 (66%), Positives = 48/63 (77%), Gaps = 0/63 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK+KTHSG +KRF+ +G+GKI+RQKA RRHLLEHK S TRRLDG VVA D R+
Sbjct 1 MPKSKTHSGTAKRFKVSGSGKILRQKAGRRHLLEHKSSRVTRRLDGVAVVADVDAPRIKR 60
Query 61 LLN 63
LL
Sbjct 61 LLG 63
>gi|332670157|ref|YP_004453165.1| 50S ribosomal protein L35 [Cellulomonas fimi ATCC 484]
gi|332339195|gb|AEE45778.1| ribosomal protein L35 [Cellulomonas fimi ATCC 484]
Length=64
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/62 (65%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TG+GK++R++AN RHLLEHK S RTRR+ G VV+A DT ++
Sbjct 1 MPKNKTHSGAKKRFRITGSGKVMREQANGRHLLEHKSSRRTRRIAGDVVVSAADTPKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|296129472|ref|YP_003636722.1| ribosomal protein L35 [Cellulomonas flavigena DSM 20109]
gi|296021287|gb|ADG74523.1| ribosomal protein L35 [Cellulomonas flavigena DSM 20109]
Length=64
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 48/62 (78%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRFR TGTGK++R++AN RHLLEHK S RTRR+ G VV+ DT R+
Sbjct 1 MPKNKTHSGAKKRFRVTGTGKVMREQANGRHLLEHKSSRRTRRIAGDVVVSPADTPRIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|111224588|ref|YP_715382.1| 50S ribosomal protein L35 [Frankia alni ACN14a]
gi|123142776|sp|Q0RF99.1|RL35_FRAAA RecName: Full=50S ribosomal protein L35
gi|111152120|emb|CAJ63848.1| 50S ribosomal subunit protein A [Frankia alni ACN14a]
Length=64
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/62 (68%), Positives = 47/62 (76%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK K+HSGASKRFR TG+GK+VRQKANRRHLLEHK S RTRRL G + D R+
Sbjct 1 MPKQKSHSGASKRFRITGSGKVVRQKANRRHLLEHKSSRRTRRLAGVEPLTKADAGRIKR 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|117928475|ref|YP_873026.1| 50S ribosomal protein L35 [Acidothermus cellulolyticus 11B]
gi|166231145|sp|A0LUD0.1|RL35_ACIC1 RecName: Full=50S ribosomal protein L35
gi|117648938|gb|ABK53040.1| LSU ribosomal protein L35P [Acidothermus cellulolyticus 11B]
Length=64
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/62 (68%), Positives = 48/62 (78%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTH+GA KRFR TGTGK++R++ANR HLLEHKPS RTRRL VAA DT R+
Sbjct 1 MPKFKTHTGAGKRFRVTGTGKLMRRRANRNHLLEHKPSRRTRRLWNEVPVAAADTARMRR 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|227875289|ref|ZP_03993431.1| ribosomal protein L35 [Mobiluncus mulieris ATCC 35243]
gi|269978176|ref|ZP_06185126.1| ribosomal protein L35 [Mobiluncus mulieris 28-1]
gi|306818551|ref|ZP_07452274.1| 50S ribosomal protein L35 [Mobiluncus mulieris ATCC 35239]
gi|307701039|ref|ZP_07638064.1| ribosomal protein L35 [Mobiluncus mulieris FB024-16]
gi|227844194|gb|EEJ54361.1| ribosomal protein L35 [Mobiluncus mulieris ATCC 35243]
gi|269933685|gb|EEZ90269.1| ribosomal protein L35 [Mobiluncus mulieris 28-1]
gi|304648724|gb|EFM46026.1| 50S ribosomal protein L35 [Mobiluncus mulieris ATCC 35239]
gi|307614034|gb|EFN93278.1| ribosomal protein L35 [Mobiluncus mulieris FB024-16]
Length=64
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 47/62 (76%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSG KRFR TG+GK++R+ AN+RHLLEHK S RTRRL VVA +D KRV
Sbjct 1 MPKNKTHSGTKKRFRTTGSGKLMRETANKRHLLEHKSSRRTRRLSQDQVVAPSDVKRVKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|237785423|ref|YP_002906128.1| 50S ribosomal protein L35 [Corynebacterium kroppenstedtii DSM
44385]
gi|259647347|sp|C4LID0.1|RL35_CORK4 RecName: Full=50S ribosomal protein L35
gi|237758335|gb|ACR17585.1| 50S ribosomal protein L35 [Corynebacterium kroppenstedtii DSM
44385]
Length=64
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/60 (69%), Positives = 48/60 (80%), Gaps = 0/60 (0%)
Query 3 KAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTSLL 62
K KTHSG KR ++TG+GK+ R++ANRRHLLE KPSTRTRRL G T V+ NDTKRV LL
Sbjct 2 KQKTHSGIKKRIKKTGSGKLRREQANRRHLLEGKPSTRTRRLKGDTSVSRNDTKRVNRLL 61
>gi|182439699|ref|YP_001827418.1| 50S ribosomal protein L35 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239986545|ref|ZP_04707209.1| 50S ribosomal protein L35 [Streptomyces roseosporus NRRL 11379]
gi|291443485|ref|ZP_06582875.1| ribosomal protein L35 [Streptomyces roseosporus NRRL 15998]
7 more sequence titles
Length=64
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/62 (62%), Positives = 48/62 (78%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGASKRF+ TG+GK++R++A +RHLLEHK S +TR L G VVA D K++
Sbjct 1 MPKNKTHSGASKRFKITGSGKVLRERAGKRHLLEHKSSKKTRSLTGTVVVAPADAKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|294811659|ref|ZP_06770302.1| 50S ribosomal protein L35 [Streptomyces clavuligerus ATCC 27064]
gi|326440157|ref|ZP_08214891.1| 50S ribosomal protein L35 [Streptomyces clavuligerus ATCC 27064]
gi|294324258|gb|EFG05901.1| 50S ribosomal protein L35 [Streptomyces clavuligerus ATCC 27064]
Length=64
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/62 (60%), Positives = 48/62 (78%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSG+ KRF+ TG+GK++R++A +RHLLEHKPST TRRL G +A D K++
Sbjct 1 MPKNKTHSGSKKRFKITGSGKVLRERAGKRHLLEHKPSTLTRRLTGNAEMAPGDAKKIKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|86741867|ref|YP_482267.1| 50S ribosomal protein L35 [Frankia sp. CcI3]
gi|124078994|sp|Q2J854.1|RL35_FRASC RecName: Full=50S ribosomal protein L35
gi|86568729|gb|ABD12538.1| LSU ribosomal protein L35P [Frankia sp. CcI3]
Length=64
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/62 (65%), Positives = 47/62 (76%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK K+HSGASKRFR TG+GK++RQ+ANRRH LEHK S TRRLDG + D +RV
Sbjct 1 MPKQKSHSGASKRFRVTGSGKVLRQRANRRHYLEHKTSRLTRRLDGVVPLTKADNRRVKR 60
Query 61 LL 62
LL
Sbjct 61 LL 62
>gi|163839502|ref|YP_001623907.1| 50S ribosomal protein L35 [Renibacterium salmoninarum ATCC 33209]
gi|189042781|sp|A9WQB0.1|RL35_RENSM RecName: Full=50S ribosomal protein L35
gi|162952978|gb|ABY22493.1| LSU ribosomal protein L35P [Renibacterium salmoninarum ATCC 33209]
Length=64
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/62 (62%), Positives = 45/62 (73%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK KTHSGA KRF+ TG+GK+ RQ+ANRRH LEHKPST TRRL V+ D K +
Sbjct 1 MPKMKTHSGAKKRFKLTGSGKLKRQQANRRHYLEHKPSTLTRRLAADKTVSPADAKNIKK 60
Query 61 LL 62
+L
Sbjct 61 ML 62
>gi|296140119|ref|YP_003647362.1| 50S ribosomal protein L35 [Tsukamurella paurometabola DSM 20162]
gi|296028253|gb|ADG79023.1| ribosomal protein L35 [Tsukamurella paurometabola DSM 20162]
Length=64
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/62 (63%), Positives = 47/62 (76%), Gaps = 0/62 (0%)
Query 1 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTS 60
MPK K+HSG +KRF+ +G+GK++RQKA RRHLLEHK S TRRLDG VA D +RV
Sbjct 1 MPKNKSHSGTAKRFKISGSGKVLRQKAGRRHLLEHKSSRVTRRLDGVAEVAPADVRRVKK 60
Query 61 LL 62
LL
Sbjct 61 LL 62
Lambda K H
0.317 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130804070320
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40