BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1648
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608786|ref|NP_216164.1| transmembrane protein [Mycobacteriu... 513 9e-144
gi|323719909|gb|EGB29022.1| transmembrane protein [Mycobacterium... 512 2e-143
gi|306775835|ref|ZP_07414172.1| transmembrane protein [Mycobacte... 511 4e-143
gi|118617273|ref|YP_905605.1| transmembrane protein [Mycobacteri... 305 4e-81
gi|183982469|ref|YP_001850760.1| transmembrane protein [Mycobact... 304 1e-80
gi|296164546|ref|ZP_06847117.1| transmembrane protein [Mycobacte... 283 2e-74
gi|342860767|ref|ZP_08717417.1| hypothetical protein MCOL_17888 ... 281 5e-74
gi|41407456|ref|NP_960292.1| hypothetical protein MAP1358 [Mycob... 280 2e-73
gi|254775571|ref|ZP_05217087.1| hypothetical protein MaviaA2_130... 278 6e-73
gi|118465362|ref|YP_882305.1| hypothetical protein MAV_3121 [Myc... 276 2e-72
gi|240168033|ref|ZP_04746692.1| transmembrane protein [Mycobacte... 276 2e-72
gi|296166839|ref|ZP_06849256.1| conserved hypothetical protein [... 201 1e-49
gi|169629417|ref|YP_001703066.1| hypothetical protein MAB_2331 [... 189 5e-46
gi|254773371|ref|ZP_05214887.1| hypothetical protein MaviaA2_016... 173 3e-41
gi|342859957|ref|ZP_08716609.1| hypothetical protein MCOL_13795 ... 172 3e-41
gi|41406435|ref|NP_959271.1| hypothetical protein MAP0337 [Mycob... 171 1e-40
gi|118466016|ref|YP_879652.1| hypothetical protein MAV_0364 [Myc... 171 1e-40
gi|317507893|ref|ZP_07965591.1| hypothetical protein HMPREF9336_... 135 4e-30
gi|296392955|ref|YP_003657839.1| transmembrane protein [Segnilip... 97.1 3e-18
gi|254384851|ref|ZP_05000188.1| conserved hypothetical protein [... 71.2 1e-10
gi|302534100|ref|ZP_07286442.1| predicted protein [Streptomyces ... 69.3 6e-10
gi|328883779|emb|CCA57018.1| hypothetical protein SVEN_3732 [Str... 68.2 1e-09
gi|302535644|ref|ZP_07287986.1| conserved hypothetical protein [... 68.2 1e-09
gi|254389412|ref|ZP_05004640.1| conserved hypothetical protein [... 67.8 2e-09
gi|229491466|ref|ZP_04385290.1| conserved hypothetical protein [... 66.2 5e-09
gi|297157288|gb|ADI07000.1| hypothetical protein SBI_03879 [Stre... 66.2 5e-09
gi|226306104|ref|YP_002766064.1| hypothetical protein RER_26170 ... 65.9 7e-09
gi|108798170|ref|YP_638367.1| hypothetical protein Mmcs_1199 [My... 64.3 2e-08
gi|297200579|ref|ZP_06917976.1| conserved hypothetical protein [... 63.9 2e-08
gi|337766331|emb|CCB75042.1| conserved membrane protein of unkno... 63.9 2e-08
gi|111020121|ref|YP_703093.1| hypothetical protein RHA1_ro03132 ... 63.5 3e-08
gi|336118755|ref|YP_004573527.1| hypothetical protein MLP_31100 ... 62.8 5e-08
gi|302523747|ref|ZP_07276089.1| predicted protein [Streptomyces ... 62.4 7e-08
gi|29830503|ref|NP_825137.1| hypothetical protein SAV_3960 [Stre... 62.0 1e-07
gi|111025339|ref|YP_707759.1| hypothetical protein RHA1_ro08557 ... 61.6 1e-07
gi|126433828|ref|YP_001069519.1| hypothetical protein Mjls_1226 ... 61.2 1e-07
gi|294630034|ref|ZP_06708594.1| conserved hypothetical protein [... 61.2 1e-07
gi|240167808|ref|ZP_04746467.1| hypothetical protein MkanA1_0073... 60.8 2e-07
gi|254380906|ref|ZP_04996272.1| hypothetical protein SSAG_00574 ... 60.5 2e-07
gi|326383167|ref|ZP_08204856.1| hypothetical protein SCNU_09531 ... 60.5 3e-07
gi|312139742|ref|YP_004007078.1| integral membrane protein [Rhod... 59.3 6e-07
gi|256391050|ref|YP_003112614.1| hypothetical protein Caci_1853 ... 59.3 6e-07
gi|342861892|ref|ZP_08718537.1| hypothetical protein MCOL_23500 ... 58.9 8e-07
gi|254776805|ref|ZP_05218321.1| hypothetical protein MaviaA2_193... 58.9 8e-07
gi|118462563|ref|YP_883510.1| hypothetical protein MAV_4375 [Myc... 58.5 9e-07
gi|41410353|ref|NP_963189.1| hypothetical protein MAP4255 [Mycob... 58.5 1e-06
gi|336460738|gb|EGO39627.1| hypothetical protein MAPs_37720 [Myc... 58.5 1e-06
gi|254818861|ref|ZP_05223862.1| hypothetical protein MintA_02994... 58.2 1e-06
gi|329941455|ref|ZP_08290734.1| integral membrane protein [Strep... 58.2 1e-06
gi|302542577|ref|ZP_07294919.1| conserved hypothetical protein [... 57.8 2e-06
>gi|15608786|ref|NP_216164.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841104|ref|NP_336141.1| hypothetical protein MT1686 [Mycobacterium tuberculosis CDC1551]
gi|31792835|ref|NP_855328.1| transmembrane protein [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=268
Score = 513 bits (1322), Expect = 9e-144, Method: Compositional matrix adjust.
Identities = 268/268 (100%), Positives = 268/268 (100%), Gaps = 0/268 (0%)
Query 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW
Sbjct 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
Query 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG
Sbjct 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
Query 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH
Sbjct 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
Query 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA
Sbjct 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
Query 241 AGFARWTRARATSLPPGALAIPQPALSR 268
AGFARWTRARATSLPPGALAIPQPALSR
Sbjct 241 AGFARWTRARATSLPPGALAIPQPALSR 268
>gi|323719909|gb|EGB29022.1| transmembrane protein [Mycobacterium tuberculosis CDC1551A]
Length=268
Score = 512 bits (1319), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 267/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%)
Query 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW
Sbjct 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
Query 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG
Sbjct 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
Query 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH
Sbjct 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
Query 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA
Sbjct 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
Query 241 AGFARWTRARATSLPPGALAIPQPALSR 268
AGFARWTRARATSLPPGALAIPQP+LSR
Sbjct 241 AGFARWTRARATSLPPGALAIPQPSLSR 268
>gi|306775835|ref|ZP_07414172.1| transmembrane protein [Mycobacterium tuberculosis SUMu001]
gi|306971941|ref|ZP_07484602.1| transmembrane protein [Mycobacterium tuberculosis SUMu010]
gi|307079657|ref|ZP_07488827.1| transmembrane protein [Mycobacterium tuberculosis SUMu011]
gi|308215750|gb|EFO75149.1| transmembrane protein [Mycobacterium tuberculosis SUMu001]
gi|308358628|gb|EFP47479.1| transmembrane protein [Mycobacterium tuberculosis SUMu010]
gi|308362554|gb|EFP51405.1| transmembrane protein [Mycobacterium tuberculosis SUMu011]
Length=268
Score = 511 bits (1316), Expect = 4e-143, Method: Compositional matrix adjust.
Identities = 267/268 (99%), Positives = 267/268 (99%), Gaps = 0/268 (0%)
Query 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHAST LHNLAHGHLGTLW
Sbjct 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTKLHNLAHGHLGTLW 60
Query 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG
Sbjct 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
Query 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH
Sbjct 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
Query 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA
Sbjct 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
Query 241 AGFARWTRARATSLPPGALAIPQPALSR 268
AGFARWTRARATSLPPGALAIPQPALSR
Sbjct 241 AGFARWTRARATSLPPGALAIPQPALSR 268
>gi|118617273|ref|YP_905605.1| transmembrane protein [Mycobacterium ulcerans Agy99]
gi|118569383|gb|ABL04134.1| transmembrane protein [Mycobacterium ulcerans Agy99]
Length=260
Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 184/252 (74%), Positives = 204/252 (81%), Gaps = 0/252 (0%)
Query 2 IYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWN 61
I+ + C LAR+RFTV Y+AALASVS +LM GPQ H +VIRHASTNLHNLAHG L TLWN
Sbjct 8 IFAIVCRLARVRFTVSYLAALASVSIAMLMLGPQAHERVIRHASTNLHNLAHGRLATLWN 67
Query 62 SAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGW 121
SAFVIDEGPLYFWLPCLACLLA+AEL LR+ RLTVAF VGH+GATLLVAA LAGA+E GW
Sbjct 68 SAFVIDEGPLYFWLPCLACLLALAELHLRTARLTVAFFVGHLGATLLVAATLAGAVEFGW 127
Query 122 LPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHT 181
LP SI+ VSDVGMSYGALA LGALTAAI RWRPAWIGWWV+LGLA A GG FTD+GH
Sbjct 128 LPVSIAHVSDVGMSYGALAVLGALTAAISRRWRPAWIGWWVALGLAAAIAGGDFTDSGHA 187
Query 182 VALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGAA 241
V+LLLGMLVTA F P RWT R ALL V+SGF +LLAH+ W+ +G ALG +GAL A
Sbjct 188 VSLLLGMLVTARFRHPIRWTPARYALLMVSSGFGFLLLAHTRWTSANGVALGAVGALVAC 247
Query 242 GFARWTRARATS 253
G ARWT R S
Sbjct 248 GLARWTTMRVAS 259
>gi|183982469|ref|YP_001850760.1| transmembrane protein [Mycobacterium marinum M]
gi|183175795|gb|ACC40905.1| transmembrane protein [Mycobacterium marinum M]
Length=260
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 184/249 (74%), Positives = 203/249 (82%), Gaps = 0/249 (0%)
Query 2 IYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWN 61
I+ + C LAR+RFTV Y+AALASVS +LM GPQ H +VIRHASTNLHNLAHG L TLWN
Sbjct 8 IFAIVCRLARVRFTVSYLAALASVSIAMLMLGPQAHERVIRHASTNLHNLAHGRLATLWN 67
Query 62 SAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGW 121
SAFVIDEGPLYFWLPCLACLLA+AEL LR+ RLTVAF VGH+GATLLVAA LAGA+E GW
Sbjct 68 SAFVIDEGPLYFWLPCLACLLALAELHLRTARLTVAFFVGHLGATLLVAATLAGAVEFGW 127
Query 122 LPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHT 181
LP SI+ VSDVGMSYGALA LGALTAAI RWRPAWIGWWV+LGLA A GG FTD+GH
Sbjct 128 LPVSIAHVSDVGMSYGALAVLGALTAAISRRWRPAWIGWWVALGLAAAVAGGDFTDSGHA 187
Query 182 VALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGAA 241
V+LLLGMLVTA F P RWT R ALL V+SGF +LLAH+ W+ SG ALG +GAL A
Sbjct 188 VSLLLGMLVTARFRHPIRWTPARYALLMVSSGFGFLLLAHTRWTSASGVALGAVGALVAY 247
Query 242 GFARWTRAR 250
G ARWT R
Sbjct 248 GLARWTTMR 256
>gi|296164546|ref|ZP_06847117.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900146|gb|EFG79581.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=270
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/244 (64%), Positives = 186/244 (77%), Gaps = 0/244 (0%)
Query 9 LARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDE 68
LAR++FTVGYVAAL +VS IL GP H ++ ASTN+HNLAHGH+GTL SA V+D
Sbjct 12 LARVQFTVGYVAALLAVSCAILALGPHAHDVLVERASTNVHNLAHGHVGTLLGSALVVDA 71
Query 69 GPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISR 128
GPLYFWLP L CLLA+ EL LR++RL VAF+VGHIGATL+VAA LA A+E GWLP SI+R
Sbjct 72 GPLYFWLPFLTCLLALGELHLRTIRLVVAFLVGHIGATLVVAAALAAAVEFGWLPLSITR 131
Query 129 VSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
SDVGMSYGALA LGA+TA IP RWR AW+GWWVS GLA+A IGG FTDAGHTVA++LG+
Sbjct 132 ASDVGMSYGALAVLGAMTAVIPQRWRAAWVGWWVSAGLASAIIGGDFTDAGHTVAVVLGV 191
Query 189 LVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGAAGFARWTR 248
LV+A F P RWT R +LA +SGF ++LAH W ++ + A GLLGAL A R+
Sbjct 192 LVSARFRHPIRWTPVRSLMLAASSGFGFLMLAHHWGTMAAAPAFGLLGALAAHKLVRFLN 251
Query 249 ARAT 252
RA
Sbjct 252 GRAV 255
>gi|342860767|ref|ZP_08717417.1| hypothetical protein MCOL_17888 [Mycobacterium colombiense CECT
3035]
gi|342131791|gb|EGT85048.1| hypothetical protein MCOL_17888 [Mycobacterium colombiense CECT
3035]
Length=272
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 158/271 (59%), Positives = 197/271 (73%), Gaps = 4/271 (1%)
Query 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
M+ + LAR++FTVGY A L ++S IL GPQ H +++ ASTN+HNLAHGH+GTL
Sbjct 1 MLGGIVSRLARVQFTVGYAALLLAISCAILALGPQAHDIIVQRASTNVHNLAHGHVGTLL 60
Query 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
SA V+D GPLYFWLP L CLLA+AEL LR++RL VAF+VGHIGATLLVAA LA ++E G
Sbjct 61 GSALVVDAGPLYFWLPFLTCLLALAELHLRTIRLVVAFLVGHIGATLLVAAALAASVEFG 120
Query 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
WLP SI+R SDVGMSYGALA LGA+TA IP RWR AW+GWWVS G+A+A IGG FTDAGH
Sbjct 121 WLPVSITRASDVGMSYGALAVLGAMTAVIPSRWRAAWVGWWVSAGIASAIIGGDFTDAGH 180
Query 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
TVA++LG+LV+A F +P WT R +LA +SGF ++LAH W +L + GL+GA A
Sbjct 181 TVAVILGVLVSARFRQPIHWTPARYLMLAASSGFGFLMLAHHWGTLAATPVFGLVGAFLA 240
Query 241 AGFARWTRARATSLPP----GALAIPQPALS 267
A++ R P LA PQPA++
Sbjct 241 YQVAKFAGGRGLPALPLDGGDPLAGPQPAVA 271
>gi|41407456|ref|NP_960292.1| hypothetical protein MAP1358 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395808|gb|AAS03675.1| hypothetical protein MAP_1358 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457810|gb|EGO36804.1| hypothetical protein MAPs_19090 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=272
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/271 (59%), Positives = 198/271 (74%), Gaps = 4/271 (1%)
Query 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
MI + LAR++FTVGY A L ++S ILM GPQ H +++ ASTNLHNL+HGHLGTL
Sbjct 1 MIGGIVSRLARVQFTVGYAALLLAISCAILMLGPQAHDVIVQRASTNLHNLSHGHLGTLL 60
Query 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
SA V+D GPLYFWLP L CLLA+AEL LR++RL VAF+VGHIGATLLVAA LA ++E G
Sbjct 61 GSALVVDAGPLYFWLPFLTCLLALAELHLRTIRLVVAFLVGHIGATLLVAAALAASVEFG 120
Query 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
WLP SI+R SDVGMSYGALA LGA+TA IP RWR AW+GWWV+ G+A+A +GG FTDAGH
Sbjct 121 WLPVSITRASDVGMSYGALAVLGAMTAVIPARWRAAWVGWWVAAGIASAIVGGDFTDAGH 180
Query 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
TVA++LG+LV+A F +P WT R +LA +SGF ++LAH W ++ + GLLGA A
Sbjct 181 TVAVILGVLVSARFRQPIHWTPARYLMLAASSGFGFLMLAHHWGTMAATPVFGLLGAAVA 240
Query 241 AGFARWTRARATSLPP----GALAIPQPALS 267
A+ R ++ P L PQPA++
Sbjct 241 YAAAKAYTGRGLAVTPLDGDDPLTGPQPAVA 271
>gi|254775571|ref|ZP_05217087.1| hypothetical protein MaviaA2_13013 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=272
Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/271 (58%), Positives = 198/271 (74%), Gaps = 4/271 (1%)
Query 1 MIYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLW 60
MI + LAR++FTVGY A L ++S IL+ GPQ H +++ ASTNLHNL+HGHLGTL
Sbjct 1 MIGGIVSRLARVQFTVGYAALLLAISCAILVLGPQAHDVIVQRASTNLHNLSHGHLGTLL 60
Query 61 NSAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIG 120
SA V+D GPLYFWLP L CLLA+AEL LR++RL VAF+VGHIGATLLVAA LA ++E G
Sbjct 61 GSALVVDAGPLYFWLPFLTCLLALAELHLRTIRLVVAFLVGHIGATLLVAAALAASVEFG 120
Query 121 WLPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGH 180
WLP SI+R SDVGMSYGALA LGA+TA IP RWR AW+GWWV+ G+A+A +GG FTDAGH
Sbjct 121 WLPVSITRASDVGMSYGALAVLGAMTAVIPARWRAAWVGWWVAAGIASAIVGGDFTDAGH 180
Query 181 TVALLLGMLVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGA 240
TVA++LG+LV+A F +P WT R +LA +SGF ++LAH W ++ + GLLGA A
Sbjct 181 TVAVILGVLVSARFRQPIHWTPARYLMLAASSGFGFLMLAHHWGTMAATPVFGLLGAAVA 240
Query 241 AGFARWTRARATSLPP----GALAIPQPALS 267
A+ R ++ P L PQPA++
Sbjct 241 YAAAKAYTGRGLAVTPLDGDDPLTGPQPAVA 271
>gi|118465362|ref|YP_882305.1| hypothetical protein MAV_3121 [Mycobacterium avium 104]
gi|118166649|gb|ABK67546.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=267
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/263 (59%), Positives = 195/263 (75%), Gaps = 4/263 (1%)
Query 9 LARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDE 68
LAR++FTVGY A L ++S IL+ GPQ H +++ ASTNLHNL+HGHLGTL SA V+D
Sbjct 4 LARVQFTVGYAALLLAISCAILVLGPQAHDVIVQRASTNLHNLSHGHLGTLLGSALVVDA 63
Query 69 GPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISR 128
GPLYFWLP L CLLA+AEL LR++RL VAF+VGHIGATLLVAA LA ++E GWLP SI+R
Sbjct 64 GPLYFWLPFLTCLLALAELHLRTIRLVVAFLVGHIGATLLVAAALAASVEFGWLPVSITR 123
Query 129 VSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
SDVGMSYGALA LGA+TA IP RWR AW+GWWV+ G+A+A +GG FTDAGHTVA++LG+
Sbjct 124 ASDVGMSYGALAVLGAMTAVIPARWRAAWVGWWVAAGIASAIVGGDFTDAGHTVAVILGV 183
Query 189 LVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGAAGFARWTR 248
LV+A F +P WT R +LA +SGF ++LAH W ++ + GLLGA A A+
Sbjct 184 LVSARFRQPIHWTPARYLMLAASSGFGFLMLAHHWGTMAATPVFGLLGAAVAYAAAKAYT 243
Query 249 ARATSLPP----GALAIPQPALS 267
R ++ P L PQPA++
Sbjct 244 GRGLAVTPLDGDDPLTGPQPAVA 266
>gi|240168033|ref|ZP_04746692.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=251
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/242 (74%), Positives = 196/242 (81%), Gaps = 0/242 (0%)
Query 9 LARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDE 68
L R+RFT+GY+AALASVS ILM GP H QVIRHASTNLHNL+HG LGTLWNSAFVI E
Sbjct 4 LGRVRFTLGYLAALASVSIAILMLGPHAHEQVIRHASTNLHNLSHGRLGTLWNSAFVIAE 63
Query 69 GPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISR 128
GPLYFWLPCLACLLA+AEL L + RLT+AFVVGH+GATLLVAA LAGA+E GWLPWSI+R
Sbjct 64 GPLYFWLPCLACLLALAELHLHTGRLTLAFVVGHLGATLLVAAALAGAVEFGWLPWSITR 123
Query 129 VSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
VSDVGMSYGALA +GALTA I RWRPAWIGWW SL +A A GG FTDAGH ++LLLGM
Sbjct 124 VSDVGMSYGALAVVGALTATISRRWRPAWIGWWASLAVAAAIAGGDFTDAGHAISLLLGM 183
Query 189 LVTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGAAGFARWTR 248
LVT F RP RWT R ALL V+SGF +LLAH+ W+ VSG A+G LGA A G ARW
Sbjct 184 LVTMRFDRPVRWTPARYALLMVSSGFGFLLLAHTSWTSVSGVAVGALGAGVAYGLARWKT 243
Query 249 AR 250
R
Sbjct 244 MR 245
>gi|296166839|ref|ZP_06849256.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897716|gb|EFG77305.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=269
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/235 (51%), Positives = 149/235 (64%), Gaps = 3/235 (1%)
Query 11 RIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGP 70
R+R T Y L +VS T+ G A V+R STNLHNLAHGHLG L SAFV D G
Sbjct 30 RLRVTAAYALMLLAVSVTLTALGRHTRAAVVREMSTNLHNLAHGHLGALVGSAFVSDGGD 89
Query 71 LYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVS 130
+Y WLP L CLLA+ EL R L + F VGHIGAT++VA L A+E G LP+S++R +
Sbjct 90 VYLWLPGLVCLLALGELIWRGRGLLITFAVGHIGATVIVAVGLVAAVETGRLPFSVARAT 149
Query 131 DVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLV 190
DVG+SYGA+ LGALTA+IP RWRPAWIGWW+ + +A AT+ FT GH +ALLLGM +
Sbjct 150 DVGISYGAVCVLGALTASIPARWRPAWIGWWLGIAVA-ATVDADFTAFGHVLALLLGMAL 208
Query 191 TACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGALGAAGFAR 245
+ RWT ALL V + F +L+ S S ++ GL GA+ A AR
Sbjct 209 SFRLPSIPRWTGMHAALLVVGAAFAYFVLSGS--SPLAAPVGGLTGAVIAVPLAR 261
>gi|169629417|ref|YP_001703066.1| hypothetical protein MAB_2331 [Mycobacterium abscessus ATCC 19977]
gi|169241384|emb|CAM62412.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus]
Length=256
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 125/264 (48%), Positives = 161/264 (61%), Gaps = 13/264 (4%)
Query 2 IYRVACLLARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWN 61
+ RV L R+R T+GY AL +V+ +++ GP++ +V+ HASTNLHNL GHLGTL
Sbjct 1 MRRVWAALVRLRVTIGYAVALVAVAVVLVIEGPRMQDRVVAHASTNLHNLHQGHLGTLIG 60
Query 62 SAFVIDEGPLYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGW 121
SAFV D GP+Y WLP L +LA+AELQ RS RL + FV+GHIGATL+V LA A+ + W
Sbjct 61 SAFVTDAGPIYLWLPGLMSILALAELQWRSGRLALTFVLGHIGATLIVGLGLAFAVWLHW 120
Query 122 LPWSISRVSDVGMSYGALAALGALTAAIPGRWRPAWIGW-WVSLGLATATIGGGFTDAGH 180
P SI+R SDVGMSYG A LGALT +IP RWR +W GW W+++GL FT+ GH
Sbjct 121 APVSIARASDVGMSYGTAAVLGALTFSIPPRWRTSW-GWGWITIGLVAIVCNQTFTEVGH 179
Query 181 TVALLLGML---VTACFTRPARWTLGRCALLAVASGFCLVLLAHSWWSLVSGSALGLLGA 237
ALLLGML +T + W+ R +LLA F L+L + +L A+ L
Sbjct 180 LTALLLGMLGARLTPSYA--PHWSALRLSLLACGCLFALMLFSEDGQTL----AVALPAG 233
Query 238 LGAAGFARWTRARATSLPPGALAI 261
L A W R P G +AI
Sbjct 234 LAAVLITHWVSERRR--PHGQVAI 255
>gi|254773371|ref|ZP_05214887.1| hypothetical protein MaviaA2_01636 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=277
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/188 (54%), Positives = 120/188 (64%), Gaps = 1/188 (0%)
Query 33 GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVAELQLRSL 92
GP + STN+HNL G LGTL SAFV D G L+FWLP L CLLA+ EL RS
Sbjct 49 GPHARQVAVSRMSTNVHNLGRGQLGTLIGSAFVDDGGQLFFWLPGLVCLLALGELLWRSK 108
Query 93 RLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIPGR 152
L V F VGHIGAT++VA L AIE G LP S++R SDVG+SYGA+ LGA+TAA+P R
Sbjct 109 GLLVTFAVGHIGATMIVAVGLVAAIESGMLPASVARASDVGISYGAMCVLGAITAALPVR 168
Query 153 WRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACFTRPARWTLGRCALLAVAS 212
WR W GWW+ + AT+G FT GH VALLLG+ ++ A WT ALL V +
Sbjct 169 WRGVWAGWWLGTAV-VATVGADFTAVGHVVALLLGIGLSFRLRSTASWTPVHLALLCVGA 227
Query 213 GFCLVLLA 220
F +LLA
Sbjct 228 TFGYLLLA 235
>gi|342859957|ref|ZP_08716609.1| hypothetical protein MCOL_13795 [Mycobacterium colombiense CECT
3035]
gi|342132335|gb|EGT85564.1| hypothetical protein MCOL_13795 [Mycobacterium colombiense CECT
3035]
Length=276
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/209 (51%), Positives = 125/209 (60%), Gaps = 1/209 (0%)
Query 12 IRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPL 71
IR T Y L ++ + GP + STN+HNL GHLGTL SAFV D G L
Sbjct 27 IRVTASYAVLLLAIYLLLAALGPHAREVAVSRMSTNVHNLGRGHLGTLIGSAFVNDGGDL 86
Query 72 YFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSD 131
+FWLP L CLLA+ EL L V F VGHIGATL+VA L AIE G LP S++R SD
Sbjct 87 FFWLPGLVCLLALGELMWCGRGLLVTFAVGHIGATLIVAVGLVAAIEAGTLPVSVARASD 146
Query 132 VGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVT 191
VG+SYGA+ LGA TAAIP RWR AW GWW+ + A+ FT GH VALLLG+ ++
Sbjct 147 VGISYGAVCVLGAFTAAIPARWRGAWAGWWLGTAVVAAS-SADFTAVGHVVALLLGIGLS 205
Query 192 ACFTRPARWTLGRCALLAVASGFCLVLLA 220
A A WT ALL V F +LLA
Sbjct 206 ARMRPAASWTPLHQALLMVGVTFGYLLLA 234
>gi|41406435|ref|NP_959271.1| hypothetical protein MAP0337 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394784|gb|AAS02654.1| hypothetical protein MAP_0337 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=331
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/188 (53%), Positives = 119/188 (64%), Gaps = 1/188 (0%)
Query 33 GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVAELQLRSL 92
GP + STN+HNL G LGTL SAFV D G L+FWLP L CLLA+ EL R
Sbjct 118 GPHARQVAVSRMSTNVHNLGRGQLGTLIGSAFVDDGGELFFWLPGLVCLLALGELLWRGK 177
Query 93 RLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIPGR 152
L V F VGHIGAT++VA L AIE G LP S++R SDVG+SYGA+ LGA+TAA+P R
Sbjct 178 GLLVTFAVGHIGATMIVAVGLVAAIESGMLPASVARASDVGISYGAMCVLGAITAAMPVR 237
Query 153 WRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACFTRPARWTLGRCALLAVAS 212
WR W GWW+ + AT+G FT GH VALLLG+ ++ A WT ALL V +
Sbjct 238 WRGVWAGWWLGTAV-VATVGADFTAVGHVVALLLGIGLSFRLRSTASWTPVHLALLCVGA 296
Query 213 GFCLVLLA 220
F +LLA
Sbjct 297 TFGYLLLA 304
>gi|118466016|ref|YP_879652.1| hypothetical protein MAV_0364 [Mycobacterium avium 104]
gi|118167303|gb|ABK68200.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=351
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/188 (53%), Positives = 119/188 (64%), Gaps = 1/188 (0%)
Query 33 GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVAELQLRSL 92
GP + STN+HNL G LGTL SAFV D G L+FWLP L CLLA+ EL R
Sbjct 123 GPHARQVAVSRMSTNVHNLGRGQLGTLIGSAFVDDGGQLFFWLPGLVCLLALGELLWRGK 182
Query 93 RLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIPGR 152
L V F VGHIGAT++VA L AIE G LP S++R SDVG+SYGA+ LGA+TAA+P R
Sbjct 183 GLLVTFAVGHIGATMIVAVGLVAAIESGMLPASVARASDVGISYGAMCVLGAITAALPVR 242
Query 153 WRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACFTRPARWTLGRCALLAVAS 212
WR W GWW+ + AT+G FT GH VALLLG+ ++ A WT ALL V +
Sbjct 243 WRGVWAGWWLGTAV-VATVGADFTAVGHVVALLLGIGLSFRLRSTASWTPVHLALLCVGA 301
Query 213 GFCLVLLA 220
F +LLA
Sbjct 302 TFGYLLLA 309
>gi|317507893|ref|ZP_07965591.1| hypothetical protein HMPREF9336_01963 [Segniliparus rugosus ATCC
BAA-974]
gi|316253822|gb|EFV13194.1| hypothetical protein HMPREF9336_01963 [Segniliparus rugosus ATCC
BAA-974]
Length=257
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/195 (45%), Positives = 114/195 (59%), Gaps = 4/195 (2%)
Query 11 RIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGP 70
R T+GYV ALA+V+ +++ ASTNL NLA G L TL SAFV E P
Sbjct 15 RFPVTLGYVVALAAVAFLQRRLSSVGDEELVASASTNLRNLAEGRLQTLLESAFVTQEDP 74
Query 71 --LYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISR 128
++ WLP LACLLA+ EL RS RL A V+GH+G T++VA L A+ +GW+ S++
Sbjct 75 GKVWVWLPGLACLLALGELLWRSRRLAGAIVLGHVGGTVIVALGLVVALRLGWVEGSVAD 134
Query 129 VSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
+DVG+SY A+ +GAL A+P R W WW+ + FT AGH V+L+LG+
Sbjct 135 EADVGVSYAAMGVIGALVGALPRALRLPWAAWWLVVASVALWFDRDFTSAGHLVSLVLGL 194
Query 189 LVTACFTR--PARWT 201
V A R ARWT
Sbjct 195 AVGAWLARGDGARWT 209
>gi|296392955|ref|YP_003657839.1| transmembrane protein [Segniliparus rotundus DSM 44985]
gi|296180102|gb|ADG97008.1| transmembrane protein [Segniliparus rotundus DSM 44985]
Length=246
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/217 (41%), Positives = 110/217 (51%), Gaps = 5/217 (2%)
Query 10 ARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEG 69
AR T+ YV LA+V+ Q++ STNL NLA G TL SAFV E
Sbjct 14 ARFPVTLCYVLGLAAVAFFQRGLSDARGQQLVSQTSTNLRNLAEGRWLTLLESAFVTQED 73
Query 70 P--LYFWLPCLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSIS 127
P ++ WLP ACLLA+ E RS RL A V+ H+G T LVA L A+ +GW S+
Sbjct 74 PSRIWVWLPGFACLLALGEWIWRSRRLAGAIVLSHVGGTALVALGLVVALRLGWAESSVV 133
Query 128 RVSDVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLG 187
DVG+SY ++ A GAL A+P R W WW++ FT AGH V+L LG
Sbjct 134 DDDDVGVSYASMGAFGALIGAVPRALRLPWAAWWLAAAALALWRDRDFTSAGHLVSLCLG 193
Query 188 MLVTACFTR---PARWTLGRCALLAVASGFCLVLLAH 221
++ A F R RWT L AVA F +L
Sbjct 194 LMAGAWFARGGERTRWTPLMLCLAAVAFVFSFDVLVD 230
>gi|254384851|ref|ZP_05000188.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194343733|gb|EDX24699.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=215
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (32%), Positives = 86/184 (47%), Gaps = 1/184 (0%)
Query 22 LASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDE-GPLYFWLPCLAC 80
+A S +++ Q+ ++ S+NLH L + +L +SAF I+ L +
Sbjct 30 IALTSVIVVIAPDQLDHVLLHRNSSNLHELTRHPIRSLISSAFWIENPASLALYAVLFEF 89
Query 81 LLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALA 140
A E L +LR V HI ATL+ V+ AI P S+ V D+G+SYG A
Sbjct 90 FHAPVERWLGTLRWFVIVATAHITATLVSQRVVLSAIRDHRAPRSMVHVVDIGVSYGLAA 149
Query 141 ALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACFTRPARW 200
A+G LT +P WR ++ V+ G FTD GH +AL +G+L P
Sbjct 150 AIGVLTYRLPHPWRWFYLAGVVAFFGIPLLTGANFTDLGHAIALAVGLLAWPLTRHPQPT 209
Query 201 TLGR 204
T+ R
Sbjct 210 TVSR 213
>gi|302534100|ref|ZP_07286442.1| predicted protein [Streptomyces sp. C]
gi|302442995|gb|EFL14811.1| predicted protein [Streptomyces sp. C]
Length=249
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/158 (40%), Positives = 78/158 (50%), Gaps = 9/158 (5%)
Query 34 PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEG-PLYFWLPCLACLLAVAELQLRSL 92
P +V+R STN+ NL GH TL +SAFV++E PL + L L +L AE +
Sbjct 78 PAERERVLRGCSTNVDNLDTGHWETLLSSAFVVEEPMPLPYAL-LLVAVLGYAEYAYGAW 136
Query 93 RLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIP-G 151
F+ GH ATLLV L + R DVG SYG A LGALT+A+P G
Sbjct 137 WTAAVFLFGHAAATLLVYGALRRTAD-----RETRRALDVGTSYGFNAVLGALTSALPRG 191
Query 152 RWRP-AWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
R A G G FTDAGH VAL +G+
Sbjct 192 AVRNAARAGLLAVAAQPVLRRGRTFTDAGHLVALGVGI 229
>gi|328883779|emb|CCA57018.1| hypothetical protein SVEN_3732 [Streptomyces venezuelae ATCC
10712]
Length=224
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/176 (29%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Query 21 ALASVSTTILMHGPQ-VHAQVIRHASTNLHNLAHGHLGTLWNSAF-VIDEGPLYFWLPCL 78
A+ ++++ ++ PQ + ++ S+NLH L+H L L SAF + D L +
Sbjct 35 AVIAITSLVIALSPQGLETYLLHRNSSNLHQLSHHPLRALLGSAFWIEDPADLLLYAALF 94
Query 79 ACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGA 138
+ A E L + + H+ ATL+ V+ AI + +P S++ V D+G+SYG
Sbjct 95 ELIHAPVERWLGTAKWLFVVATAHVAATLISQQVVLVAIRLHDVPRSMAHVVDIGVSYGL 154
Query 139 LAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACF 194
A+ G LT +P WR ++ V+ + +TD GH ++L +G+ AC+
Sbjct 155 AASAGILTYRLPRPWRWLYLAAVVAFFVVPLLTDRTYTDLGHAISLAIGL---ACY 207
>gi|302535644|ref|ZP_07287986.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444539|gb|EFL16355.1| conserved hypothetical protein [Streptomyces sp. C]
Length=217
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (49%), Gaps = 12/175 (6%)
Query 22 LASVSTTILMHGPQVHAQVIRH-ASTNLHNLAHGHLGTLWNSAFVIDE-GPLYFWLPCLA 79
+ +V++ ++ P V+ H S+N+H L + L +SAF I+ L +
Sbjct 29 IVAVTSLVVAISPDRLDHVLLHRNSSNIHQLVKYPVRALLSSAFWIENPASLALYAVLFE 88
Query 80 CLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGAL 139
A E L +LR + H+ ATLL VL AI+ P S++ V D+G+SYG
Sbjct 89 LFHAPVERWLGTLRWLLIVATAHVVATLLSQKVLLMAIQDNRAPHSMTHVVDIGVSYGLA 148
Query 140 AALGALTAAIPGRWRPAWIGWWVSLGLA-----TATIGGGFTDAGHTVALLLGML 189
A++G LT +P WR W+ LG+ GG FTD GH +L +G+L
Sbjct 149 ASIGVLTYRLPNPWR-----WFYLLGVVAFFGLPLLTGGTFTDLGHATSLAVGLL 198
>gi|254389412|ref|ZP_05004640.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294817085|ref|ZP_06775727.1| Hypothetical protein SCLAV_p0546 [Streptomyces clavuligerus ATCC
27064]
gi|326446026|ref|ZP_08220760.1| hypothetical protein SclaA2_33397 [Streptomyces clavuligerus
ATCC 27064]
gi|197703127|gb|EDY48939.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294321900|gb|EFG04035.1| Hypothetical protein SCLAV_p0546 [Streptomyces clavuligerus ATCC
27064]
Length=245
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/172 (35%), Positives = 84/172 (49%), Gaps = 9/172 (5%)
Query 27 TTILMH--GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAV 84
TT+LMH P+ +R STN+ L+ + L +SA ID G F+ A
Sbjct 54 TTVLMHHMSPEFEEDFLRRRSTNIQQLSTDPVRVLISSALWIDGGSWLFYAVLYTVFHAS 113
Query 85 AELQLRSLR-LTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L +LR LTVA V+ H+ AT + L AI G P S D+G+SY +
Sbjct 114 AEHWLGTLRWLTVA-VLAHVLATFISEGALLWAIRHGLAPESAMHTLDIGVSYALAGVVA 172
Query 144 ALTAAIPGRWRPAWI-GWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACF 194
LT I WR ++ G + GL + G FTD GH ++L+G+ AC+
Sbjct 173 VLTYRIASPWRYVYLAGVLLVYGLPLVS-GRTFTDLGHFTSVLIGL---ACY 220
>gi|229491466|ref|ZP_04385290.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321751|gb|EEN87548.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=219
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/161 (33%), Positives = 73/161 (46%), Gaps = 3/161 (1%)
Query 34 PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVAELQLRSLR 93
V + + STNLH+LA L L++SAF ++ G +L A AE L + R
Sbjct 37 DNVEERFLGKRSTNLHHLAEDPLRVLFSSAFWLEGGGWLGYLVLFTIFHATAERWLGTWR 96
Query 94 LTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIPGRW 153
V+ H+GAT + VL I G++ S DVG+SYG +G L I W
Sbjct 97 WLCVVVIAHVGATYISEGVLYEGIRHGYVAESAVNTLDVGVSYGLAGVMGILVYRIVDPW 156
Query 154 RPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACF 194
R ++ + FT GH ALLLG+ AC+
Sbjct 157 RYVYLAGLLLFYGVPLIFATNFTAIGHMSALLLGL---ACY 194
>gi|297157288|gb|ADI07000.1| hypothetical protein SBI_03879 [Streptomyces bingchenggensis
BCW-1]
Length=209
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/185 (35%), Positives = 89/185 (49%), Gaps = 9/185 (4%)
Query 10 ARIRFTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEG 69
AR FT+GY L + P + V+ H+ST++ NL+ + L+ SA + G
Sbjct 5 ARTPFTLGYAVVLVVTGLFSRLADPDLVHDVLTHSSTDVVNLSDRPVLVLFASAVWVAGG 64
Query 70 PLYFWLPCLACLLAVAELQLR--SLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSIS 127
L ++ LA LL V L+ R R F++GH+ ATL+ +A ++ G LP S
Sbjct 65 VLTPYI--LAFLLVVGALERRLGGWRTAGVFLLGHVLATLMTELPVAASVAAGQLPDSSL 122
Query 128 RVSDVGMSYGALAALGALTAAIPGRWRPAWI---GWWVSLGLATATIGGGFTDAGHTVAL 184
R D G+SYG LA GAL + R R W G + L L TD GH +AL
Sbjct 123 RRLDYGISYGLLACTGALAGLLWPRLR--WTLLGGITLVLVLDLVEFTDPLTDCGHLLAL 180
Query 185 LLGML 189
G+L
Sbjct 181 TTGVL 185
>gi|226306104|ref|YP_002766064.1| hypothetical protein RER_26170 [Rhodococcus erythropolis PR4]
gi|226185221|dbj|BAH33325.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=221
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/161 (33%), Positives = 73/161 (46%), Gaps = 3/161 (1%)
Query 34 PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVAELQLRSLR 93
V + + STNLH+LA L L++SAF ++ G +L A AE L + R
Sbjct 39 DNVEERFLGKRSTNLHHLAEDPLRVLFSSAFWLEGGGWLGYLVLFTIFHATAERWLGTWR 98
Query 94 LTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIPGRW 153
V+ H+GAT + VL I G++ S DVG+SYG +G L I W
Sbjct 99 WLCVVVIAHVGATYISEGVLYEGIRHGYVAESAVNTLDVGVSYGLAGIMGILVYRIVDPW 158
Query 154 RPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACF 194
R ++ + FT GH ALLLG+ AC+
Sbjct 159 RFVYLAGLLLFYGVPLIFATNFTAIGHMSALLLGL---ACY 196
>gi|108798170|ref|YP_638367.1| hypothetical protein Mmcs_1199 [Mycobacterium sp. MCS]
gi|119867266|ref|YP_937218.1| hypothetical protein Mkms_1216 [Mycobacterium sp. KMS]
gi|108768589|gb|ABG07311.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
gi|119693355|gb|ABL90428.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
Length=213
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/171 (31%), Positives = 85/171 (50%), Gaps = 0/171 (0%)
Query 21 ALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLAC 80
A+ +V+T + H + +Q++R STNL +L+ L S F +D + ++P A
Sbjct 23 AVLAVTTRVQRHAGRERSQLLRSQSTNLSHLSEEPTRVLAASLFWLDGKRWWPYVPPFAA 82
Query 81 LLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALA 140
+LA AE +L + R V H+ T L L +I P ++ DVG+SY L
Sbjct 83 VLAPAERRLGTFRWLVVGAAAHVAGTYLGQGYLRWSIRAQQAPPRLADAHDVGVSYFLLG 142
Query 141 ALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVT 191
G L+A +P R R A V++ A A I FT+ GH A + G++++
Sbjct 143 VAGTLSAYLPRRHRSAARAAGVAVLAANAIIRPTFTEVGHLSAFVTGLVLS 193
>gi|297200579|ref|ZP_06917976.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197709705|gb|EDY53739.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=232
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/168 (33%), Positives = 77/168 (46%), Gaps = 10/168 (5%)
Query 27 TTILMH--GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCL---ACL 81
TT+ +H P+ + +R STN+H L+ L L +SA ID G WLP + +
Sbjct 45 TTVALHHMSPEFEEEFLRQRSTNIHELSSNPLRVLVSSAMWIDSG---HWLPYVVLYSLF 101
Query 82 LAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAA 141
A AE L + R H+ ATL+ L I G P S D+G+SY
Sbjct 102 HAPAERWLGTARWLAVCAAAHVLATLISEGALLWGIRHGMAPASAVNTLDIGVSYALAGV 161
Query 142 LGALTAAIPGRWRPAWIGWWVSLGLATATIGG-GFTDAGHTVALLLGM 188
+G L IP WR + G+ V + A + G FTD GH + L+G
Sbjct 162 VGVLVYRIPAPWRYVY-GFVVLVVYAVPLVTGRTFTDLGHFTSALIGF 208
>gi|337766331|emb|CCB75042.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057]
Length=223
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/184 (34%), Positives = 84/184 (46%), Gaps = 10/184 (5%)
Query 25 VSTTILMHG--PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEG--PLYFWLPCLAC 80
++TT L+H P + + H STN+HNL + L SA +D G PLYF L L
Sbjct 31 LATTRLVHHFPPGFRDRFLEHRSTNVHNLWRTPVRVLVASALYLDGGGWPLYFVLYNL-- 88
Query 81 LLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALA 140
E L + R V H+GAT L ++ A+ G+ P S D+G+SY
Sbjct 89 FHVPVERWLGTWRWLGVAAVAHVGATYLSEGLVLLAVRTGYAPHSALFTRDIGVSYALAG 148
Query 141 ALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACFTRPARW 200
GALT +P WR ++ + + FT GH A LLG+ AC ARW
Sbjct 149 VQGALTHRLPRPWRYGYLACLLGVYGFALAADRTFTGVGHLTAALLGL---ACVP-AARW 204
Query 201 TLGR 204
+ R
Sbjct 205 SARR 208
>gi|111020121|ref|YP_703093.1| hypothetical protein RHA1_ro03132 [Rhodococcus jostii RHA1]
gi|110819651|gb|ABG94935.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=228
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/164 (33%), Positives = 75/164 (46%), Gaps = 2/164 (1%)
Query 27 TTILMHG--PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAV 84
T+++M P A+V+ STNLH+LA + L +SAF + G +
Sbjct 36 TSVVMKNLLPDDLARVLGDRSTNLHHLAEDPVRVLISSAFWLAGGGWITYFISFNIFHVP 95
Query 85 AELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGA 144
AE L +LR V+ H+GAT + VL AI G P S D+G+SYG +
Sbjct 96 AERWLGTLRWLCVVVIAHVGATYISEGVLYWAIRHGHAPASAVDTLDIGVSYGLAGVIAV 155
Query 145 LTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
LT I WR ++ ++ I FT GH A LLG+
Sbjct 156 LTYRIASPWRYLYVAAVLAFFAVPLFIDLNFTAIGHFTAALLGL 199
>gi|336118755|ref|YP_004573527.1| hypothetical protein MLP_31100 [Microlunatus phosphovorus NM-1]
gi|334686539|dbj|BAK36124.1| hypothetical protein MLP_31100 [Microlunatus phosphovorus NM-1]
Length=217
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/168 (34%), Positives = 85/168 (51%), Gaps = 10/168 (5%)
Query 26 STTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVA 85
ST I H ++I++ STNL+N+ L L+ SAFV+ +P + + +
Sbjct 33 STWIAAHPRSEVRELIQNVSTNLNNMRSHPLEVLFASAFVVSPLTQLLLVPVVIFVFGIV 92
Query 86 ELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGAL 145
+ L L +V GH+GATL V ++ A+ +SI+ DVG+SYG AA+G L
Sbjct 93 QRWLGRTALIAIWVFGHVGATLFVMSMEITALYRHIARFSITVKPDVGVSYGLAAAIGLL 152
Query 146 TAAIPGRWRPAWIGWWVSLGLATATIG-----GGFTDAGHTVALLLGM 188
A +P RWR W +LG AT G FT GH A+++G+
Sbjct 153 AAWVPHRWRV-----WYALGCLVATCGMLAIWPDFTSLGHLTAIVIGL 195
>gi|302523747|ref|ZP_07276089.1| predicted protein [Streptomyces sp. AA4]
gi|302432642|gb|EFL04458.1| predicted protein [Streptomyces sp. AA4]
Length=336
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/183 (34%), Positives = 85/183 (47%), Gaps = 11/183 (6%)
Query 14 FTVGYVAALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYF 73
FT GY+ L S I ++ +++ +ST+ HN+A L L SAF I +G
Sbjct 141 FTFGYLVLLLGTSLLIRFGSAKLTDKLLAVSSTDAHNMARHPLTALLTSAFWIADG---G 197
Query 74 WLPCLACL-LAVAELQLR--SLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVS 130
WLP +AVA + R LR + F GH+ AT+ + I LP S R
Sbjct 198 WLPYAVIFAIAVAPFERRFGGLRTALVFFSGHVLATIATELPVMALIRTDVLPHSAGRWL 257
Query 131 DVGMSYGALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLV 190
D+G+SYG L G L A + GR R I + L IG TD T+A ++ +L
Sbjct 258 DIGVSYGFLTTAGVLVALLRGRARIVGI-----VALELFVIGVYVTDDPATLASVVTLLG 312
Query 191 TAC 193
AC
Sbjct 313 HAC 315
>gi|29830503|ref|NP_825137.1| hypothetical protein SAV_3960 [Streptomyces avermitilis MA-4680]
gi|29607615|dbj|BAC71672.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=196
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/172 (32%), Positives = 75/172 (44%), Gaps = 7/172 (4%)
Query 21 ALASVSTTILMH-GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLP--- 76
A+ V+T L H P +R STN+H L+ + L SA ID G WLP
Sbjct 4 AILFVTTVALHHMSPDFEEDFLRQRSTNIHELSRDPVRVLITSAMWIDGG---HWLPYAV 60
Query 77 CLACLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSY 136
A AE L + R V H+ ATL L AI G P S D+G+SY
Sbjct 61 LFTVFHAQAERWLGTPRWLAVCVAAHVLATLASEGALLEAIRDGVAPRSAVNTLDIGVSY 120
Query 137 GALAALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
+ LT I WR ++ +++ + FTD GH +ALL+G+
Sbjct 121 ALAGVIAVLTYRIAEPWRYGYLVVVLAVYGGSLAASPTFTDFGHFLALLIGL 172
>gi|111025339|ref|YP_707759.1| hypothetical protein RHA1_ro08557 [Rhodococcus jostii RHA1]
gi|110824318|gb|ABG99601.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=233
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/164 (32%), Positives = 76/164 (47%), Gaps = 2/164 (1%)
Query 27 TTILMHG--PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAV 84
T+++M P+V A+V+ STNLH+LA + L +SAF + G +
Sbjct 41 TSVVMRNLPPEVLARVLGDRSTNLHHLAEDPVRVLISSAFWLAGGGWITYFISFNIFHVP 100
Query 85 AELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGA 144
AE L +LR V+ H+GAT + L AI G P S D+G+SYG +
Sbjct 101 AERWLGTLRWLGVVVIAHVGATYISEGALYWAIRHGHAPASAVDTLDIGVSYGLAGVIAV 160
Query 145 LTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
LT I WR ++ ++ + FT GH A LLG+
Sbjct 161 LTYRIAPPWRYLYVTAVLAFFAVPLFVDLNFTAIGHFTAALLGL 204
>gi|126433828|ref|YP_001069519.1| hypothetical protein Mjls_1226 [Mycobacterium sp. JLS]
gi|126233628|gb|ABN97028.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=213
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/168 (31%), Positives = 81/168 (49%), Gaps = 0/168 (0%)
Query 21 ALASVSTTILMHGPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLAC 80
A+ +V+T + H + +Q++R STNL +L+ L S F +D + ++P A
Sbjct 23 AVLAVTTRVQRHAGRERSQLLRSQSTNLSHLSEEPTRVLAASLFWLDGKRWWPYVPPFAA 82
Query 81 LLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALA 140
+LA AE +L + R V H+ T L L +I P ++ DVG+SY L
Sbjct 83 VLAPAERRLGTFRWLVVGAAAHVTGTYLGQGYLRWSIRAEQAPPRLADAHDVGVSYFLLG 142
Query 141 ALGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
G L+A +P R R A V++ A I FT+ GH A + G+
Sbjct 143 VAGTLSAYLPRRHRSAARAAGVAVLATNAIIRPTFTEVGHLSAFVTGL 190
>gi|294630034|ref|ZP_06708594.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292833367|gb|EFF91716.1| conserved hypothetical protein [Streptomyces sp. e14]
Length=231
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/167 (32%), Positives = 72/167 (44%), Gaps = 8/167 (4%)
Query 27 TTILMH--GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLA---CL 81
TT+ +H P + +R STNLH L+ + L SA G WLP A
Sbjct 28 TTVALHRMSPHFETEFLRQRSTNLHELSEHPVRVLVASAMWTAGG---RWLPYAALYTVF 84
Query 82 LAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAA 141
A AE +L + R H+ ATL+ L I G +P S DVG+SY
Sbjct 85 HAQAERRLGTPRWLAVCAAAHVLATLISEGALLWGIRRGVVPDSAVNTLDVGVSYALAGV 144
Query 142 LGALTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGM 188
+G LT +P WR + + G FTD GH A+L+G+
Sbjct 145 VGVLTWCVPRPWRYGYAAAVLGFFAVPLATGRTFTDLGHFTAVLIGL 191
>gi|240167808|ref|ZP_04746467.1| hypothetical protein MkanA1_00730 [Mycobacterium kansasii ATCC
12478]
Length=241
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/169 (32%), Positives = 81/169 (48%), Gaps = 8/169 (4%)
Query 27 TTILMH---GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLA 83
TTI+ + G Q+H+ V+ H STN+ +L L L++S ID L +L LA
Sbjct 37 TTIIQNQLTGRQLHS-VLLHRSTNIRHLGRDPLEVLFSSLLWIDGRNLEPYLLLFTLFLA 95
Query 84 VAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L LR + HIGAT +L AI++ + + D+G+SY + +
Sbjct 96 PAEHWLGQLRWLTVGLTAHIGATYFSEGLLYFAIQMRDASERLVQSRDIGVSYFLVGVMA 155
Query 144 ALTAAIPGRWRPAWIG-WWVSLGLATATIGG---GFTDAGHTVALLLGM 188
LT I WR ++G +V G T+ FT GH A+L+G+
Sbjct 156 VLTYHIAKPWRWGYLGVLFVIFGFPLITMDKTELDFTAIGHFTAILIGL 204
>gi|254380906|ref|ZP_04996272.1| hypothetical protein SSAG_00574 [Streptomyces sp. Mg1]
gi|194339817|gb|EDX20783.1| hypothetical protein SSAG_00574 [Streptomyces sp. Mg1]
Length=311
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/166 (35%), Positives = 74/166 (45%), Gaps = 16/166 (9%)
Query 38 AQVIRHASTNLHNLAHGH------------LGTLWNSAFVIDEGPLYFWLPCLACLLAVA 85
A V+ H STNL NL H H GTL + V G L + C LA A
Sbjct 96 ADVLGHLSTNLDNL-HDHPLSALLGSMLFFDGTLTDVTSVEFVGTLITLGLGVCCFLAWA 154
Query 86 ELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGAL 145
E + R F+ GH+ ATLL A V+ A+ GW P ++ D G+SYGA L
Sbjct 155 ERRWGKRRAVAVFLGGHVVATLLTAVVITVALRHGWYPAAVRHALDYGVSYGAQTVLALG 214
Query 146 TAAIPGRWRPAWIGWWVSLGLATATIGGGFTD---AGHTVALLLGM 188
T A+P R R W + ++ L G D GH VA +LG
Sbjct 215 TLALPRRGRLPWAVFVLAWPLGGVEWNGPLPDFITIGHLVAAVLGF 260
>gi|326383167|ref|ZP_08204856.1| hypothetical protein SCNU_09531 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198303|gb|EGD55488.1| hypothetical protein SCNU_09531 [Gordonia neofelifaecis NRRL
B-59395]
Length=236
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/174 (31%), Positives = 81/174 (47%), Gaps = 17/174 (9%)
Query 25 VSTTILMHGPQVH--AQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCL---A 79
++TTI+ H Q++ STN+ NL H L + S F +D +W+P
Sbjct 33 LATTIVQHNVSADRLDQILGKRSTNIDNLLHDPLRAFFGSLFWLDGA---YWVPYFIGFT 89
Query 80 CLLAVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGAL 139
LA AE + S R V + GH+ ATL+ ++ AI G S++ +DVG+SY
Sbjct 90 IFLATAERWIGSRRYVVVGLTGHVLATLISQGLVGAAIAHGDADSSLTYATDVGVSYFMA 149
Query 140 AALGALTAAIPGRWRPAWI-----GWWVSLGLATATIGGGFTDAGHTVALLLGM 188
+ + L +P WR +I +++ L L T FT GH AL +G
Sbjct 150 SVIAVLAYYLPRPWRWVYIVGAMGFFYLPLVLEPVT----FTAVGHASALTIGF 199
>gi|312139742|ref|YP_004007078.1| integral membrane protein [Rhodococcus equi 103S]
gi|311889081|emb|CBH48394.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=221
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/181 (32%), Positives = 77/181 (43%), Gaps = 9/181 (4%)
Query 27 TTILMH--GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAV 84
TT++MH PQV V+ STNLH+L + L SAF I G +
Sbjct 28 TTVVMHHLSPQVLNDVLGDRSTNLHHLREDPIRVLVTSAFWIAGGTWIGYFLLFNLFHVP 87
Query 85 AELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGA 144
E L S R V+ H+GAT + VL AI+ P S DVG+SY +
Sbjct 88 VERWLGSWRWLSVAVIAHVGATYISEGVLYLAIQHHRAPESAVNTLDVGVSYALAGVMAV 147
Query 145 LTAAIPGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACF----TRPARW 200
L I WR ++ + + G FTD GH A+L+G C+ +RP W
Sbjct 148 LAYRIAPPWRYVYVVGVLLVYGLPLFGGLTFTDIGHFTAVLIGF---GCYPLTRSRPGVW 204
Query 201 T 201
Sbjct 205 D 205
>gi|256391050|ref|YP_003112614.1| hypothetical protein Caci_1853 [Catenulispora acidiphila DSM
44928]
gi|256357276|gb|ACU70773.1| conserved hypothetical protein [Catenulispora acidiphila DSM
44928]
Length=233
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/170 (32%), Positives = 72/170 (43%), Gaps = 10/170 (5%)
Query 25 VSTTILMH-GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLA 83
V+T IL H P ++ STN+H L L L SA ID G F+ A
Sbjct 28 VTTAILRHVSPHTEHWILERRSTNIHYLMEDPLRVLIQSALWIDGGSWLFYAALYTLFHA 87
Query 84 VAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L + R ++ H+ AT + LA AI G +P S D G+SY AL
Sbjct 88 QAERWLGTWRWLAVALISHVLATYVSEGALAWAIHNGTVPQSKRYTLDYGVSY----ALA 143
Query 144 ALTAAIPGRWRPAWIGWWVSLGL-----ATATIGGGFTDAGHTVALLLGM 188
+ A + W W+ W + + G FTD GH A L+G+
Sbjct 144 GVIAVLAYWWPRGWMRWVYAAAVLAFYGQAMLRGRTFTDVGHFTATLVGL 193
>gi|342861892|ref|ZP_08718537.1| hypothetical protein MCOL_23500 [Mycobacterium colombiense CECT
3035]
gi|342130709|gb|EGT84013.1| hypothetical protein MCOL_23500 [Mycobacterium colombiense CECT
3035]
Length=229
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/175 (31%), Positives = 80/175 (46%), Gaps = 10/175 (5%)
Query 25 VSTTILMH--GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLL 82
++T I H G ++H+ V+ H STN+H L L L++S ID +L L
Sbjct 27 ITTIIQTHLTGRELHS-VLLHRSTNIHELGRDPLDVLFSSLLWIDGKNFEPYLLLFTLFL 85
Query 83 AVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAAL 142
A AE L LR + HI AT + +L AIE + D+G+SY + +
Sbjct 86 APAEHWLGQLRWLTVGLSSHILATYISEGILYFAIEEHDASQRLVHARDIGVSYFLVGVM 145
Query 143 GALTAAIPGRWRPAWIG-WWVSLGLATATIGG--GFTDAGHTVALLLGMLVTACF 194
L I WR ++G ++ G T+G FT GH ++L+G+ CF
Sbjct 146 AVLAYHIAPPWRWGYLGVLFIIFGFPLITMGSELNFTAIGHFTSILIGL----CF 196
>gi|254776805|ref|ZP_05218321.1| hypothetical protein MaviaA2_19361 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=231
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/185 (31%), Positives = 83/185 (45%), Gaps = 12/185 (6%)
Query 27 TTILMH---GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLA 83
TTI+ + G Q+H+ V+ H STN+H L L L++S ID +L LA
Sbjct 25 TTIIQNQLTGRQLHS-VLLHRSTNIHELGRDPLDVLFSSLLWIDGKNFEPYLLLFTLFLA 83
Query 84 VAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L LR + HI AT + +L AIE + D+G+SY + +
Sbjct 84 PAEHWLGQLRWLTVGLSSHILATYISEGILYFAIEKHDASERLVHARDIGVSYFLVGVMA 143
Query 144 ALTAAIPGRWRPAWIG-WWVSLGLATATIGG---GFTDAGHTVALLLGMLVTACFTRPAR 199
LT I WR ++G ++ G T+ FT GH ++L+G+ CF R
Sbjct 144 VLTFHIARPWRWGYLGVLFLIFGFPLLTMDRVELNFTAIGHFTSILIGL----CFYPMTR 199
Query 200 WTLGR 204
GR
Sbjct 200 AKGGR 204
>gi|118462563|ref|YP_883510.1| hypothetical protein MAV_4375 [Mycobacterium avium 104]
gi|118163850|gb|ABK64747.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=234
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/185 (31%), Positives = 83/185 (45%), Gaps = 12/185 (6%)
Query 27 TTILMH---GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLA 83
TTI+ + G Q+H+ V+ H STN+H L L L++S ID +L LA
Sbjct 28 TTIIQNQLTGRQLHS-VLLHRSTNIHELGRDPLDVLFSSLLWIDGKNFEPYLLLFTLFLA 86
Query 84 VAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L LR + HI AT + +L AIE + D+G+SY + +
Sbjct 87 PAEHWLGQLRWLTVGLSSHILATYISEGILYFAIEKHDASERLVHARDIGVSYFLVGVMA 146
Query 144 ALTAAIPGRWRPAWIG-WWVSLGLATATIGG---GFTDAGHTVALLLGMLVTACFTRPAR 199
LT I WR ++G ++ G T+ FT GH ++L+G+ CF R
Sbjct 147 VLTFHIARPWRWGYLGVLFLIFGFPLLTMDRVELNFTAIGHFTSILIGL----CFYPMTR 202
Query 200 WTLGR 204
GR
Sbjct 203 AKGGR 207
>gi|41410353|ref|NP_963189.1| hypothetical protein MAP4255 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399187|gb|AAS06805.1| hypothetical protein MAP_4255 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=243
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/185 (31%), Positives = 83/185 (45%), Gaps = 12/185 (6%)
Query 27 TTILMH---GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLA 83
TTI+ + G Q+H+ V+ H STN+H L L L++S ID +L LA
Sbjct 37 TTIIQNQLTGRQLHS-VLLHRSTNIHELGRDPLDVLFSSLLWIDGKNFEPYLLLFTLFLA 95
Query 84 VAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L LR + HI AT + +L AIE + D+G+SY + +
Sbjct 96 PAEHWLGQLRWLTVGLSSHILATYISEGILYFAIEKHDASERLVHARDIGVSYFLVGVMA 155
Query 144 ALTAAIPGRWRPAWIG-WWVSLGLATATIGG---GFTDAGHTVALLLGMLVTACFTRPAR 199
LT I WR ++G ++ G T+ FT GH ++L+G+ CF R
Sbjct 156 VLTFHIARPWRWGYLGVLFLIFGFPLLTMDRVELNFTAIGHFTSILIGL----CFYPMTR 211
Query 200 WTLGR 204
GR
Sbjct 212 AKGGR 216
>gi|336460738|gb|EGO39627.1| hypothetical protein MAPs_37720 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=231
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/185 (31%), Positives = 83/185 (45%), Gaps = 12/185 (6%)
Query 27 TTILMH---GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLA 83
TTI+ + G Q+H+ V+ H STN+H L L L++S ID +L LA
Sbjct 25 TTIIQNQLTGRQLHS-VLLHRSTNIHELGRDPLDVLFSSLLWIDGKNFEPYLLLFTLFLA 83
Query 84 VAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALG 143
AE L LR + HI AT + +L AIE + D+G+SY + +
Sbjct 84 PAEHWLGQLRWLTVGLSSHILATYISEGILYFAIEKHDASERLVHARDIGVSYFLVGVMA 143
Query 144 ALTAAIPGRWRPAWIG-WWVSLGLATATIGG---GFTDAGHTVALLLGMLVTACFTRPAR 199
LT I WR ++G ++ G T+ FT GH ++L+G+ CF R
Sbjct 144 VLTFHIARPWRWGYLGVLFLIFGFPLLTMDRVELNFTAIGHFTSILIGL----CFYPMTR 199
Query 200 WTLGR 204
GR
Sbjct 200 AKGGR 204
>gi|254818861|ref|ZP_05223862.1| hypothetical protein MintA_02994 [Mycobacterium intracellulare
ATCC 13950]
Length=224
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/176 (32%), Positives = 80/176 (46%), Gaps = 11/176 (6%)
Query 25 VSTTILMH--GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLL 82
V+T I H G Q+H+ V+ H STN+H L L L++S ID +L L
Sbjct 24 VTTIIQNHLTGRQLHS-VLLHRSTNIHELGKDPLHVLFSSLLWIDGKSFEPYLLLFTLFL 82
Query 83 AVAELQLRSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAAL 142
A AE L LR + HI AT + +L AIE + D+G+SY + +
Sbjct 83 APAEHWLGQLRWLSVGLSSHILATYISEGILYFAIEERDASQRLVHARDIGVSYFLVGVM 142
Query 143 GALTAAIPGRWRPAWIG-WWVSLGLATATIGG---GFTDAGHTVALLLGMLVTACF 194
LT I WR ++G +V G T+ FT GH ++L+G+ CF
Sbjct 143 AVLTYHIARPWRWGYLGVLFVIFGFPLITMDRVDLDFTAIGHFASILIGL----CF 194
>gi|329941455|ref|ZP_08290734.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329299986|gb|EGG43885.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length=220
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/172 (32%), Positives = 74/172 (44%), Gaps = 13/172 (7%)
Query 33 GPQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLP---CLACLLAVAELQL 89
P+ + + H STN+H L+ + L +SA D+G WLP A A AE L
Sbjct 45 SPEFAHKFLLHRSTNIHELSEHPVRVLVSSALWTDDG---HWLPYAALYALFHARAEHWL 101
Query 90 RSLRLTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAI 149
+ R H+ ATL L AI +G P S D G+SY +G LT +
Sbjct 102 GTARWLTVCAAAHVLATLASEGALLWAIHLGRAPHSAVDTLDTGVSYALAGVMGILTYRV 161
Query 150 PGRWRPAWIGWWVSLGLATATIGGGFTDAGHTVALLLGMLVTACF----TRP 197
P WR A+ ++ TD GH +ALL G+ AC TRP
Sbjct 162 PRPWRHAYAAVLLTALTVPLLTHHTVTDLGHLLALLTGL---ACHPLTRTRP 210
>gi|302542577|ref|ZP_07294919.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460195|gb|EFL23288.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
53653]
Length=252
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/161 (34%), Positives = 81/161 (51%), Gaps = 11/161 (6%)
Query 34 PQVHAQVIRHASTNLHNLAHGHLGTLWNSAFVIDEGPLYFWLPCLACLLAVAELQLRSLR 93
P+ ++ +ST++ NL+ L TL SA + G +L L +L E ++ LR
Sbjct 86 PRTVHDLLTVSSTDVSNLSQRPLLTLLASALWVVGGITSPYLVVLLLVLGALERRVGGLR 145
Query 94 LTVAFVVGHIGATLLVAAVLAGAIEIGWLPWSISRVSDVGMSYGALAALGALTAAIPGRW 153
F++GH+ ATLL +A ++ +G LP S R D G+SYG +A GAL + R
Sbjct 146 TAGVFLLGHVLATLLTEIPVAASVAVGHLPDSSLRRLDYGVSYGLIACAGALAGLLSPRQ 205
Query 154 RPAWIGWWVSLGLATATIGGG------FTDAGHTVALLLGM 188
R W ++ G+ A I G TD GH +ALL G+
Sbjct 206 R-----WALTGGIGAALIAGSLVHFDPLTDWGHALALLTGV 241
Lambda K H
0.327 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 410477079682
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40