BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1669

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608807|ref|NP_216185.1|  hypothetical protein Rv1669 [Mycoba...   245    1e-63
gi|289750224|ref|ZP_06509602.1|  hypothetical protein TBDG_03260 ...   244    4e-63
gi|15841124|ref|NP_336161.1|  hypothetical protein MT1707.1 [Myco...   105    3e-21
gi|238920647|ref|YP_002934162.1|  long-chain fatty acid outer mem...  39.3    0.19 
gi|269139796|ref|YP_003296497.1|  long-chain fatty acid transport...  37.0    1.00 
gi|157370709|ref|YP_001478698.1|  aldo/keto reductase [Serratia p...  34.7    4.2  
gi|161502464|ref|YP_001569576.1|  long-chain fatty acid outer mem...  34.3    5.9  
gi|89055587|ref|YP_511038.1|  putative L-arabinose isomerase prot...  34.3    6.5  
gi|301024182|ref|ZP_07187890.1|  outer membrane protein transport...  33.9    7.8  


>gi|15608807|ref|NP_216185.1| hypothetical protein Rv1669 [Mycobacterium tuberculosis H37Rv]
 gi|31792855|ref|NP_855348.1| hypothetical protein Mb1696 [Mycobacterium bovis AF2122/97]
 gi|121637576|ref|YP_977799.1| hypothetical protein BCG_1707 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 41 more sequence titles
 
gi|148661465|ref|YP_001282988.1| hypothetical protein MRA_1679A [Mycobacterium tuberculosis H37Ra]
 gi|148822877|ref|YP_001287631.1| hypothetical protein TBFG_11686 [Mycobacterium tuberculosis F11]
 gi|167969214|ref|ZP_02551491.1| hypothetical protein MtubH3_14780 [Mycobacterium tuberculosis 
H37Ra]
 gi|224990051|ref|YP_002644738.1| hypothetical protein JTY_1682 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799292|ref|YP_003032293.1| hypothetical protein TBMG_02325 [Mycobacterium tuberculosis KZN 
1435]
 gi|289443126|ref|ZP_06432870.1| hypothetical protein TBLG_00228 [Mycobacterium tuberculosis T46]
 gi|289447281|ref|ZP_06437025.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554557|ref|ZP_06443767.1| hypothetical protein TBXG_02307 [Mycobacterium tuberculosis KZN 
605]
 gi|289569715|ref|ZP_06449942.1| hypothetical protein TBJG_00082 [Mycobacterium tuberculosis T17]
 gi|289574336|ref|ZP_06454563.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745894|ref|ZP_06505272.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289753760|ref|ZP_06513138.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757780|ref|ZP_06517158.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761824|ref|ZP_06521202.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298525168|ref|ZP_07012577.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308375641|ref|ZP_07668074.1| hypothetical protein TMGG_00216 [Mycobacterium tuberculosis SUMu007]
 gi|308401194|ref|ZP_07669410.1| hypothetical protein TMLG_00651 [Mycobacterium tuberculosis SUMu012]
 gi|339631723|ref|YP_004723365.1| hypothetical protein MAF_16860 [Mycobacterium africanum GM041182]
 gi|3261545|emb|CAA17609.1| HYPOTHETICAL PROTEIN Rv1669 [Mycobacterium tuberculosis H37Rv]
 gi|31618445|emb|CAD96363.1| HYPOTHETICAL PROTEIN Mb1696 [Mycobacterium bovis AF2122/97]
 gi|121493223|emb|CAL71694.1| Hypothetical protein BCG_1707 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148505617|gb|ABQ73426.1| hypothetical protein MRA_1679A [Mycobacterium tuberculosis H37Ra]
 gi|148721404|gb|ABR06029.1| hypothetical protein TBFG_11686 [Mycobacterium tuberculosis F11]
 gi|224773164|dbj|BAH25970.1| hypothetical protein JTY_1682 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320795|gb|ACT25398.1| hypothetical protein TBMG_02325 [Mycobacterium tuberculosis KZN 
1435]
 gi|289416045|gb|EFD13285.1| hypothetical protein TBLG_00228 [Mycobacterium tuberculosis T46]
 gi|289420239|gb|EFD17440.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439189|gb|EFD21682.1| hypothetical protein TBXG_02307 [Mycobacterium tuberculosis KZN 
605]
 gi|289538767|gb|EFD43345.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289543469|gb|EFD47117.1| hypothetical protein TBJG_00082 [Mycobacterium tuberculosis T17]
 gi|289686422|gb|EFD53910.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289694347|gb|EFD61776.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709330|gb|EFD73346.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289713344|gb|EFD77356.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494962|gb|EFI30256.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308345570|gb|EFP34421.1| hypothetical protein TMGG_00216 [Mycobacterium tuberculosis SUMu007]
 gi|308366108|gb|EFP54959.1| hypothetical protein TMLG_00651 [Mycobacterium tuberculosis SUMu012]
 gi|328459043|gb|AEB04466.1| hypothetical protein TBSG_02337 [Mycobacterium tuberculosis KZN 
4207]
 gi|339331079|emb|CCC26757.1| hypothetical protein MAF_16860 [Mycobacterium africanum GM041182]
 gi|341601594|emb|CCC64267.1| hypothetical protein BCGM_1674 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219490|gb|AEN00121.1| hypothetical protein MTCTRI2_1698 [Mycobacterium tuberculosis 
CTRI-2]
Length=120

 Score =  245 bits (626),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    MSRRPGYSNGRAGASRQAARGGSAGASSVAFSSQPNCGLTESVLGHQVTGICLGTIHLDA  60
            MSRRPGYSNGRAGASRQAARGGSAGASSVAFSSQPNCGLTESVLGHQVTGICLGTIHLDA
Sbjct  1    MSRRPGYSNGRAGASRQAARGGSAGASSVAFSSQPNCGLTESVLGHQVTGICLGTIHLDA  60

Query  61   MQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ  120
            MQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ
Sbjct  61   MQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ  120


>gi|289750224|ref|ZP_06509602.1| hypothetical protein TBDG_03260 [Mycobacterium tuberculosis T92]
 gi|289690811|gb|EFD58240.1| hypothetical protein TBDG_03260 [Mycobacterium tuberculosis T92]
Length=120

 Score =  244 bits (622),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%), Gaps = 0/120 (0%)

Query  1    MSRRPGYSNGRAGASRQAARGGSAGASSVAFSSQPNCGLTESVLGHQVTGICLGTIHLDA  60
            MSRRPGYSNGRAGASRQAARGGSAGASSVAFSSQPNCGLTESVLGHQVTGICLGTIHLDA
Sbjct  1    MSRRPGYSNGRAGASRQAARGGSAGASSVAFSSQPNCGLTESVLGHQVTGICLGTIHLDA  60

Query  61   MQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ  120
            MQWPWSSAYRLEPAVATTLIGISAWWANGSVKQY GDLTDRVATMTVCRRTPAPRVHYRQ
Sbjct  61   MQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYTGDLTDRVATMTVCRRTPAPRVHYRQ  120


>gi|15841124|ref|NP_336161.1| hypothetical protein MT1707.1 [Mycobacterium tuberculosis CDC1551]
 gi|13881342|gb|AAK45975.1| hypothetical protein MT1707.1 [Mycobacterium tuberculosis CDC1551]
Length=50

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 49/50 (98%), Positives = 50/50 (100%), Gaps = 0/50 (0%)

Query  71   LEPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ  120
            +EPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ
Sbjct  1    MEPAVATTLIGISAWWANGSVKQYAGDLTDRVATMTVCRRTPAPRVHYRQ  50


>gi|238920647|ref|YP_002934162.1| long-chain fatty acid outer membrane transporter [Edwardsiella 
ictaluri 93-146]
 gi|238870216|gb|ACR69927.1| long-chain fatty acid transport protein [Edwardsiella ictaluri 
93-146]
Length=438

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 1/77 (1%)

Query  28   SVAFSSQPNCGLTESVLGHQVTGICLGTIHLDAMQWPWSSAYRLEPAVATTLIGISAWWA  87
            S+  S+  N GL      +   G   GT  L    +  S+AYRL   ++  L GI+A +A
Sbjct  118  SIGASATSNYGLATDFNDNYTAGAFGGTTDLMTANFNLSTAYRLNQQLSFGL-GINAVYA  176

Query  88   NGSVKQYAGDLTDRVAT  104
               +++YAGDL   +AT
Sbjct  177  KAKIERYAGDLPQMLAT  193


>gi|269139796|ref|YP_003296497.1| long-chain fatty acid transport protein [Edwardsiella tarda EIB202]
 gi|267985457|gb|ACY85286.1| long-chain fatty acid transport protein [Edwardsiella tarda EIB202]
 gi|304559661|gb|ADM42325.1| Long-chain fatty acid transport protein [Edwardsiella tarda FL6-60]
Length=438

 Score = 37.0 bits (84),  Expect = 1.00, Method: Compositional matrix adjust.
 Identities = 24/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query  28   SVAFSSQPNCGLTESVLGHQVTGICLGTIHLDAMQWPWSSAYRLEPAVATTLIGISAWWA  87
            S+  S+  N GL      +   G   GT  L    +  S+AYRL   ++  L G++A +A
Sbjct  118  SIGASATSNYGLATEFNDNYTAGAFGGTTDLMTANFNLSTAYRLNQQLSFGL-GVNAVYA  176

Query  88   NGSVKQYAGDLTDRVA  103
               +++YAGDL   +A
Sbjct  177  KAKIERYAGDLPQMLA  192


>gi|157370709|ref|YP_001478698.1| aldo/keto reductase [Serratia proteamaculans 568]
 gi|157322473|gb|ABV41570.1| aldo/keto reductase [Serratia proteamaculans 568]
Length=348

 Score = 34.7 bits (78),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 20/76 (27%), Positives = 42/76 (56%), Gaps = 15/76 (19%)

Query  36   NCGLTESVLGHQVTGICLGTIHLDAMQW-PW-SSAYRLEPAV------ATTLIGISAWWA  87
            NCGL       +V+ +CLGT+++ + QW PW    ++ EP +          I ++ +++
Sbjct  8    NCGL-------KVSRLCLGTMNMGSKQWKPWIFDEHQSEPLIRHALECGINFIDLADFYS  60

Query  88   NGSVKQYAGDLTDRVA  103
            +G+ ++  G++  R+A
Sbjct  61   SGAGEEVVGNIIGRLA  76


>gi|161502464|ref|YP_001569576.1| long-chain fatty acid outer membrane transporter [Salmonella 
enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863811|gb|ABX20434.1| hypothetical protein SARI_00508 [Salmonella enterica subsp. arizonae 
serovar 62:z4,z23:--]
Length=437

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 26/81 (33%), Positives = 35/81 (44%), Gaps = 1/81 (1%)

Query  36   NCGLTESVLGHQVTGICLGTIHLDAMQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYA  95
            N GL          G   GT  L+ M    S AYRL  A +  L G  A +A   +++YA
Sbjct  128  NYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNDAWSFGL-GFDAVYARAKIERYA  186

Query  96   GDLTDRVATMTVCRRTPAPRV  116
            GDL   +A  +      A R+
Sbjct  187  GDLGQLIAAQSPALAPIASRI  207


>gi|89055587|ref|YP_511038.1| putative L-arabinose isomerase protein [Jannaschia sp. CCS1]
 gi|88865136|gb|ABD56013.1| putative L-arabinose isomerase protein [Jannaschia sp. CCS1]
Length=541

 Score = 34.3 bits (77),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 0/50 (0%)

Query  46   HQVTGICLGTIHLDAMQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYA  95
            HQ+TG+  G  H+D     W  A R+   +A T +G+   + NG +  Y+
Sbjct  217  HQITGVLNGDAHVDNEIAAWIEAARVAHIMAHTKLGVMGHYYNGMLDIYS  266


>gi|301024182|ref|ZP_07187890.1| outer membrane protein transport protein [Escherichia coli MS 
69-1]
 gi|331673843|ref|ZP_08374606.1| long-chain fatty acid transport protein (Outer membrane fadLprotein) 
(Outer membrane flp protein) [Escherichia coli TA280]
 gi|300396669|gb|EFJ80207.1| outer membrane protein transport protein [Escherichia coli MS 
69-1]
 gi|331069116|gb|EGI40508.1| long-chain fatty acid transport protein (Outer membrane fadLprotein) 
(Outer membrane flp protein) [Escherichia coli TA280]
Length=448

 Score = 33.9 bits (76),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 23/78 (30%), Positives = 34/78 (44%), Gaps = 1/78 (1%)

Query  36   NCGLTESVLGHQVTGICLGTIHLDAMQWPWSSAYRLEPAVATTLIGISAWWANGSVKQYA  95
            N GL      +   GI  G   L  +    S AYRL  + +  L G  A +A   +++YA
Sbjct  129  NYGLATEFTDNYAAGIYGGKTDLQTINLNLSGAYRLNNSWSFGL-GFDAVYAKAKIERYA  187

Query  96   GDLTDRVATMTVCRRTPA  113
            G L   ++   + R  PA
Sbjct  188  GSLGPMLSQQLIARGVPA  205



Lambda     K      H
   0.318    0.129    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128530997826


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40