BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1671

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|253799290|ref|YP_003032291.1|  hypothetical protein TBMG_02323...   256    7e-67
gi|15608809|ref|NP_216187.1|  hypothetical protein Rv1671 [Mycoba...   256    1e-66
gi|15841126|ref|NP_336163.1|  hypothetical protein MT1709 [Mycoba...   255    1e-66
gi|339631725|ref|YP_004723367.1|  hypothetical protein MAF_16880 ...   254    3e-66
gi|331695162|ref|YP_004331401.1|  hypothetical protein Psed_1305 ...   161    4e-38
gi|240171059|ref|ZP_04749718.1|  hypothetical protein MkanA1_1723...   158    3e-37
gi|83814518|ref|YP_444386.1|  hypothetical protein SRU_0240 [Sali...  52.4    2e-05
gi|294506129|ref|YP_003570187.1|  hypothetical protein SRM_00314 ...  52.4    2e-05
gi|91215129|ref|ZP_01252101.1|  hypothetical protein P700755_1256...  50.4    8e-05
gi|91215124|ref|ZP_01252096.1|  hypothetical protein P700755_1254...  47.0    8e-04
gi|307106705|gb|EFN54950.1|  hypothetical protein CHLNCDRAFT_2411...  36.2    1.7  
gi|255536713|ref|XP_002509423.1|  protein with unknown function [...  35.4    2.5  
gi|170744595|ref|YP_001773250.1|  EmrB/QacA family drug resistanc...  34.7    4.2  
gi|288959868|ref|YP_003450208.1|  branched-chain amino acid trans...  34.7    4.7  
gi|299138489|ref|ZP_07031668.1|  MotA/TolQ/ExbB proton channel [A...  34.3    6.2  
gi|297180449|gb|ADI16664.1|  hypothetical protein [uncultured Rho...  33.9    9.0  


>gi|253799290|ref|YP_003032291.1| hypothetical protein TBMG_02323 [Mycobacterium tuberculosis KZN 
1435]
 gi|254364513|ref|ZP_04980559.1| hypothetical membrane protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289554555|ref|ZP_06443765.1| membrane protein [Mycobacterium tuberculosis KZN 605]
 25 more sequence titles
 Length=131

 Score =  256 bits (654),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  60
            MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA
Sbjct  2    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  61

Query  61   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  120
            NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS
Sbjct  62   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  121

Query  121  AVTTWFGTFV  130
            AVTTWFGTFV
Sbjct  122  AVTTWFGTFV  131


>gi|15608809|ref|NP_216187.1| hypothetical protein Rv1671 [Mycobacterium tuberculosis H37Rv]
 gi|31792857|ref|NP_855350.1| hypothetical protein Mb1698 [Mycobacterium bovis AF2122/97]
 gi|121637578|ref|YP_977801.1| hypothetical protein BCG_1709 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 48 more sequence titles
 Length=130

 Score =  256 bits (653),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  60
            MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA
Sbjct  1    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  60

Query  61   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  120
            NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS
Sbjct  61   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  120

Query  121  AVTTWFGTFV  130
            AVTTWFGTFV
Sbjct  121  AVTTWFGTFV  130


>gi|15841126|ref|NP_336163.1| hypothetical protein MT1709 [Mycobacterium tuberculosis CDC1551]
 gi|13881344|gb|AAK45977.1| hypothetical protein MT1709 [Mycobacterium tuberculosis CDC1551]
Length=152

 Score =  255 bits (652),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  60
            MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA
Sbjct  23   MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  82

Query  61   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  120
            NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS
Sbjct  83   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  142

Query  121  AVTTWFGTFV  130
            AVTTWFGTFV
Sbjct  143  AVTTWFGTFV  152


>gi|339631725|ref|YP_004723367.1| hypothetical protein MAF_16880 [Mycobacterium africanum GM041182]
 gi|339331081|emb|CCC26759.1| putative membrane protein [Mycobacterium africanum GM041182]
Length=130

 Score =  254 bits (649),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%), Gaps = 0/130 (0%)

Query  1    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  60
            MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA
Sbjct  1    MPTVGPADHAAGLDRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWA  60

Query  61   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  120
            NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMA LAIAVGTYGVLS
Sbjct  61   NDLYDNYAWWFRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAALAIAVGTYGVLS  120

Query  121  AVTTWFGTFV  130
            AVTTWFGTFV
Sbjct  121  AVTTWFGTFV  130


>gi|331695162|ref|YP_004331401.1| hypothetical protein Psed_1305 [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949851|gb|AEA23548.1| hypothetical protein Psed_1305 [Pseudonocardia dioxanivorans 
CB1190]
Length=125

 Score =  161 bits (407),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 76/116 (66%), Positives = 94/116 (82%), Gaps = 0/116 (0%)

Query  14   DRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDLYDNYAWWFRV  73
              +   D+LP+WRIG+  GLVG+LCCVGPT+LAL+G+++A TAFAWA +LY+ YAWWFR+
Sbjct  9    SEKTKADRLPVWRIGLAGGLVGILCCVGPTVLALLGLVTAGTAFAWATNLYNGYAWWFRL  68

Query  74   SGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLSAVTTWFGTF  129
             GLAVLA LVW +LR RN+CSV  +RR RWRL+AVL IAVGTY  L A+TTW GTF
Sbjct  69   GGLAVLAGLVWLSLRRRNQCSVAGMRRWRWRLLAVLGIAVGTYAALYALTTWLGTF  124


>gi|240171059|ref|ZP_04749718.1| hypothetical protein MkanA1_17239 [Mycobacterium kansasii ATCC 
12478]
Length=219

 Score =  158 bits (399),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (81%), Gaps = 0/110 (0%)

Query  20   DQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDLYDNYAWWFRVSGLAVL  79
            ++LPIWRIGI  GLVG+LCCVGPT+LA+ GIIS ATA AWAN+LY NYAWWFR+SGL VL
Sbjct  109  NRLPIWRIGITGGLVGILCCVGPTVLAMFGIISGATALAWANNLYGNYAWWFRLSGLGVL  168

Query  80   AILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLSAVTTWFGTF  129
            A+L W ALR RN+CS+  +RRLRWRL  +LAIA GTY VL  VTTW   F
Sbjct  169  ALLAWIALRRRNQCSLGGVRRLRWRLATMLAIAAGTYAVLYGVTTWLERF  218


>gi|83814518|ref|YP_444386.1| hypothetical protein SRU_0240 [Salinibacter ruber DSM 13855]
 gi|83755912|gb|ABC44025.1| conserved hypothetical protein [Salinibacter ruber DSM 13855]
Length=151

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query  14   DRRATPDQLPIW----RIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDLY--DNY  67
            + RA      +W    ++    GL GMLCCV P +L  VG++    A ++A+  Y  D  
Sbjct  7    EDRADESPPSLWDWGLKVAASVGLAGMLCCVAPAVLFAVGLMGGIYAISFADLFYAPDGS  66

Query  68   ----AWWFRVSGLAVLAILV--WWALRHRNRCSVN-AIRRLRWRLMAVLAIAVGT--YGV  118
                AW  R  G+A L  LV  W   R +N+CS++ A +R    L A+L + +GT  Y  
Sbjct  67   AGLGAWLLR--GVAALVGLVGTWLYHRRQNQCSIDPARKRKNLALFALLVVVLGTGFYLS  124

Query  119  LSAVTTWF  126
               +T+W+
Sbjct  125  FEELTSWY  132


>gi|294506129|ref|YP_003570187.1| hypothetical protein SRM_00314 [Salinibacter ruber M8]
 gi|294342457|emb|CBH23235.1| Conserved hypothetical protein, membrane [Salinibacter ruber 
M8]
Length=151

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query  14   DRRATPDQLPIW----RIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDLY--DNY  67
            + RA      +W    ++    GL GMLCCV P +L  VG++    A ++A+  Y  D  
Sbjct  7    EDRANESPPSLWDWGLKVAASVGLAGMLCCVAPAVLFAVGLMGGIYAISFADLFYAPDGS  66

Query  68   ----AWWFRVSGLAVLAILV--WWALRHRNRCSVN-AIRRLRWRLMAVLAIAVGT--YGV  118
                AW  R  G+A L  LV  W   R +N+CS++ A +R    L A+L + +GT  Y  
Sbjct  67   AGLGAWILR--GVAALVGLVGTWLYHRRQNQCSIDPARKRKNLALFALLVVVLGTGFYLS  124

Query  119  LSAVTTWF  126
               +T+W+
Sbjct  125  FEELTSWY  132


>gi|91215129|ref|ZP_01252101.1| hypothetical protein P700755_12567 [Psychroflexus torquis ATCC 
700755]
 gi|91186734|gb|EAS73105.1| hypothetical protein P700755_12567 [Psychroflexus torquis ATCC 
700755]
Length=150

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 27/105 (26%), Positives = 55/105 (53%), Gaps = 9/105 (8%)

Query  31   SGLVGMLCCVGPTILALVGIISAATAFAWANDLYDNY------AWWFRVSGLAVLAILVW  84
            +G+ G+LCCV P +L + G++    A ++A+  Y +       +W  R   LA+    V+
Sbjct  25   AGIAGILCCVAPAVLFMFGLMGGIYAISFADFFYADDGSIGLGSWILRGLALAIGLFGVY  84

Query  85   WALRHRNRCSVNAIRRLRWRLMA---VLAIAVGTYGVLSAVTTWF  126
               + +N+CS+N  R+ +  ++     L + VG +  L  +++W+
Sbjct  85   MFRKKQNQCSINPKRKKKNLILMTIITLVLGVGIFLSLEKLSSWY  129


>gi|91215124|ref|ZP_01252096.1| hypothetical protein P700755_12542 [Psychroflexus torquis ATCC 
700755]
 gi|91186729|gb|EAS73100.1| hypothetical protein P700755_12542 [Psychroflexus torquis ATCC 
700755]
Length=150

 Score = 47.0 bits (110),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 26/105 (25%), Positives = 54/105 (52%), Gaps = 9/105 (8%)

Query  31   SGLVGMLCCVGPTILALVGIISAATAFAWANDLYDNY------AWWFRVSGLAVLAILVW  84
            +G+ G+LCCV P +L + G++    A ++A+  Y +       +   R   LA+    V+
Sbjct  25   AGIAGILCCVAPAVLFMFGLMGGIYAISFADFFYADDGSIGLGSLILRGLALAIGLFGVY  84

Query  85   WALRHRNRCSVNAIRRLRWRLMA---VLAIAVGTYGVLSAVTTWF  126
               + +N+CS+N  R+ +  ++     L + VG +  L  +++W+
Sbjct  85   MFRKKQNQCSINPKRKKKNLILMTTITLVLGVGIFLSLEKLSSWY  129


>gi|307106705|gb|EFN54950.1| hypothetical protein CHLNCDRAFT_24117 [Chlorella variabilis]
Length=697

 Score = 36.2 bits (82),  Expect = 1.7, Method: Composition-based stats.
 Identities = 20/53 (38%), Positives = 28/53 (53%), Gaps = 5/53 (9%)

Query  36   MLCCVGPTILALVGIISAATAFAWANDLYDNYAWWFRVSGLAVLAILVWWALR  88
            +LCCVG     +V    AA AF+WA  + D Y    R+ GL V + ++W   R
Sbjct  404  VLCCVGRAFFEMVDYPEAAKAFSWARQV-DPY----RLRGLEVYSTVLWHCKR  451


>gi|255536713|ref|XP_002509423.1| protein with unknown function [Ricinus communis]
 gi|223549322|gb|EEF50810.1| protein with unknown function [Ricinus communis]
Length=994

 Score = 35.4 bits (80),  Expect = 2.5, Method: Composition-based stats.
 Identities = 16/62 (26%), Positives = 34/62 (55%), Gaps = 4/62 (6%)

Query  65   DNYAWW----FRVSGLAVLAILVWWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLS  120
            + YAW     F ++ L ++  +VW+  ++RN  +  AI + RW LM+   +    + +L+
Sbjct  621  EGYAWLLKSIFILAALVLVIGVVWFYFKYRNYKNARAIDKSRWTLMSFHKLGFSEFEILA  680

Query  121  AV  122
            ++
Sbjct  681  SL  682


>gi|170744595|ref|YP_001773250.1| EmrB/QacA family drug resistance transporter [Methylobacterium 
sp. 4-46]
 gi|168198869|gb|ACA20816.1| drug resistance transporter, EmrB/QacA subfamily [Methylobacterium 
sp. 4-46]
Length=529

 Score = 34.7 bits (78),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 48/102 (48%), Gaps = 13/102 (12%)

Query  22   LPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDLYDNYAWWFRVSGLAVLAI  81
             P  + GI+S ++G++  + PTI   VG         +  DL+D + W F V+ L  L +
Sbjct  145  FPPSKRGIVSPMIGLVATLAPTIGPTVG--------GYLTDLFD-WHWLFLVNILPGLCV  195

Query  82   LV-WWALRHRNRCSVNAIRRLRWRLMAVLAIAVGTYGVLSAV  122
             V  WAL   +  ++  +RR  W   A LA   G  G L  V
Sbjct  196  TVSTWALVDFDEPNLALLRRFDW---AGLAFMAGFLGCLEYV  234


>gi|288959868|ref|YP_003450208.1| branched-chain amino acid transport system permease protein [Azospirillum 
sp. B510]
 gi|288912176|dbj|BAI73664.1| branched-chain amino acid transport system permease protein [Azospirillum 
sp. B510]
Length=612

 Score = 34.7 bits (78),  Expect = 4.7, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 35/73 (48%), Gaps = 10/73 (13%)

Query  8    DHAAGL----DRRATPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDL  63
            D +A L    D RA P QLP WRI I  G +G L      ++A VGI SAA  + +    
Sbjct  112  DQSAQLLFSPDPRALPTQLPTWRIAIGGGSIGALDL----LIAGVGIGSAALLYGFLR--  165

Query  64   YDNYAWWFRVSGL  76
            +    W  R + L
Sbjct  166  FTKLGWAVRATAL  178


>gi|299138489|ref|ZP_07031668.1| MotA/TolQ/ExbB proton channel [Acidobacterium sp. MP5ACTX8]
 gi|298599735|gb|EFI55894.1| MotA/TolQ/ExbB proton channel [Acidobacterium sp. MP5ACTX8]
Length=259

 Score = 34.3 bits (77),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 25/72 (35%), Positives = 33/72 (46%), Gaps = 13/72 (18%)

Query  17  ATPDQLPIWRIGIISGLVG-MLCCVGPTILALVGIISAATAFAW------------ANDL  63
           ATPDQL    +   SG +  ML   GPT L ++GI+  A+ F+W            AN  
Sbjct  13  ATPDQLGPPPVAAHSGAIAEMLHNSGPTALTVLGILLLASIFSWAIMLSKWRSFGAANKQ  72

Query  64  YDNYAWWFRVSG  75
              +   FR SG
Sbjct  73  NRRFVRAFRKSG  84


>gi|297180449|gb|ADI16664.1| hypothetical protein [uncultured Rhodobacterales bacterium HF0010_04M21]
Length=158

 Score = 33.9 bits (76),  Expect = 9.0, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 58/116 (50%), Gaps = 12/116 (10%)

Query  18   TPDQLPIWRIGIISGLVGMLCCVGPTILALVGIISAATAFAWANDLY--DNYAWWFR---  72
            + D   +WR    S  +  +CC    +L   G+ S ++A A +NDLY   N   W R   
Sbjct  24   STDVKSLWRWIGGSAFLASMCCFPSVVLVFFGLASVSSAAALSNDLYWGTNGMGWVRPTL  83

Query  73   --VSGLAVLAILVWWALRHRNRCSVNAIRRLRWRL----MAVLAIAVGTYGVLSAV  122
              +S L VLA LV +  R    CS++  +R R R+    + VL++A+ +Y V + +
Sbjct  84   MVLSTLLVLAGLVMY-FRGEGICSLDEAKRQRKRIINTSIVVLSLALLSYIVFNFI  138



Lambda     K      H
   0.330    0.140    0.489 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127765705240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40