BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1675c
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608813|ref|NP_216191.1| transcriptional regulatory protein ... 485 2e-135
gi|31792861|ref|NP_855354.1| transcriptional regulatory protein ... 484 5e-135
gi|289750231|ref|ZP_06509609.1| transcriptional regulator [Mycob... 471 3e-131
gi|308231902|ref|ZP_07663952.1| transcriptional regulator [Mycob... 381 5e-104
gi|308369498|ref|ZP_07666743.1| transcriptional regulator [Mycob... 377 7e-103
gi|240171051|ref|ZP_04749710.1| putative transcriptional regulat... 331 6e-89
gi|183981635|ref|YP_001849926.1| transcriptional regulatory prot... 324 9e-87
gi|118618730|ref|YP_907062.1| transcriptional regulatory protein... 317 1e-84
gi|331695134|ref|YP_004331373.1| Crp/Fnr family transcriptional ... 269 2e-70
gi|119716315|ref|YP_923280.1| cyclic nucleotide-binding protein ... 196 2e-48
gi|331695142|ref|YP_004331381.1| Crp/Fnr family transcriptional ... 155 6e-36
gi|21221872|ref|NP_627651.1| transcriptional regulator [Streptom... 137 1e-30
gi|170746771|ref|YP_001753031.1| Crp/FNR family transcriptional ... 89.4 5e-16
gi|255524790|ref|ZP_05391741.1| transcriptional regulator, Crp/F... 84.0 2e-14
gi|328545077|ref|YP_004305186.1| Cyclic nucleotide-binding:Bacte... 77.4 2e-12
gi|334338141|ref|YP_004543293.1| transcriptional regulator, Crp/... 77.4 2e-12
gi|118589770|ref|ZP_01547175.1| putative catabolite gene activat... 77.0 2e-12
gi|226226589|ref|YP_002760695.1| Crp family transcriptional regu... 76.6 3e-12
gi|239814291|ref|YP_002943201.1| Crp/Fnr family transcriptional ... 76.6 3e-12
gi|152964394|ref|YP_001360178.1| Crp/Fnr family transcriptional ... 76.6 3e-12
gi|269957813|ref|YP_003327602.1| Crp/Fnr family transcriptional ... 75.9 5e-12
gi|254504079|ref|ZP_05116230.1| cyclic nucleotide-binding domain... 75.9 5e-12
gi|225175315|ref|ZP_03729310.1| transcriptional regulator, Crp/F... 75.9 5e-12
gi|118590661|ref|ZP_01548062.1| Cyclic nucleotide-binding:Bacter... 75.5 6e-12
gi|224371120|ref|YP_002605284.1| cAMP-bindin transcriptional reg... 75.5 6e-12
gi|336180119|ref|YP_004585494.1| Crp/Fnr family transcriptional ... 75.5 7e-12
gi|289704681|ref|ZP_06501109.1| cyclic nucleotide-binding domain... 74.7 1e-11
gi|254822500|ref|ZP_05227501.1| Crp/FNR family transcriptional r... 74.7 1e-11
gi|154508113|ref|ZP_02043755.1| hypothetical protein ACTODO_0060... 74.3 1e-11
gi|293190617|ref|ZP_06608908.1| transcriptional regulator, Crp/F... 74.3 1e-11
gi|239918307|ref|YP_002957865.1| cAMP-binding protein [Micrococc... 74.3 2e-11
gi|320094947|ref|ZP_08026669.1| crp/Fnr family transcriptional r... 73.9 2e-11
gi|296130927|ref|YP_003638177.1| Crp/Fnr family transcriptional ... 73.6 3e-11
gi|269793829|ref|YP_003313284.1| cAMP-binding protein [Sanguibac... 73.2 3e-11
gi|291541822|emb|CBL14932.1| cAMP-binding proteins-catabolite ge... 72.4 5e-11
gi|319949582|ref|ZP_08023627.1| CRP/FNR family transcriptional r... 72.0 6e-11
gi|119714605|ref|YP_921570.1| cyclic nucleotide-binding protein ... 72.0 6e-11
gi|16332256|ref|NP_442984.1| DNR protein [Synechocystis sp. PCC ... 72.0 8e-11
gi|319792072|ref|YP_004153712.1| Crp/Fnr family transcriptional ... 72.0 8e-11
gi|317123641|ref|YP_004097753.1| transcriptional regulator [Intr... 71.6 9e-11
gi|220913917|ref|YP_002489226.1| Crp/Fnr family transcriptional ... 71.2 1e-10
gi|218781402|ref|YP_002432720.1| Crp/Fnr family transcriptional ... 71.2 1e-10
gi|158522113|ref|YP_001529983.1| Crp/FNR family transcriptional ... 71.2 1e-10
gi|296163331|ref|ZP_06846091.1| transcriptional regulator, Crp/F... 70.9 2e-10
gi|325964648|ref|YP_004242554.1| cAMP-binding protein [Arthrobac... 70.9 2e-10
gi|336321932|ref|YP_004601900.1| Crp/Fnr family transcriptional ... 70.9 2e-10
gi|119963283|ref|YP_949061.1| cyclic nucleotide-binding domain-c... 70.5 2e-10
gi|271962041|ref|YP_003336237.1| Crp/Fnr family transcriptional ... 70.5 2e-10
gi|118592222|ref|ZP_01549615.1| cAMP-binding protein - catabolit... 70.1 2e-10
gi|257069733|ref|YP_003155988.1| cAMP-binding protein [Brachybac... 70.1 3e-10
>gi|15608813|ref|NP_216191.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841131|ref|NP_336168.1| Crp/FNR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|148661472|ref|YP_001282995.1| Crp/Fnr family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
33 more sequence titles
Length=244
Score = 485 bits (1249), Expect = 2e-135, Method: Compositional matrix adjust.
Identities = 244/244 (100%), Positives = 244/244 (100%), Gaps = 0/244 (0%)
Query 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK 60
MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK
Sbjct 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK 60
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV
Sbjct 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
Query 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV
Sbjct 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
Query 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR
Sbjct 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
Query 241 ARAQ 244
ARAQ
Sbjct 241 ARAQ 244
>gi|31792861|ref|NP_855354.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|121637582|ref|YP_977805.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224990057|ref|YP_002644744.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
18 more sequence titles
Length=244
Score = 484 bits (1246), Expect = 5e-135, Method: Compositional matrix adjust.
Identities = 243/244 (99%), Positives = 243/244 (99%), Gaps = 0/244 (0%)
Query 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK 60
MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQ K
Sbjct 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQAK 60
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV
Sbjct 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
Query 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV
Sbjct 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
Query 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR
Sbjct 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
Query 241 ARAQ 244
ARAQ
Sbjct 241 ARAQ 244
>gi|289750231|ref|ZP_06509609.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289690818|gb|EFD58247.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=239
Score = 471 bits (1213), Expect = 3e-131, Method: Compositional matrix adjust.
Identities = 236/239 (99%), Positives = 237/239 (99%), Gaps = 0/239 (0%)
Query 6 VRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVKEFAPG 65
+RPLRHLVH VTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQ KEFAPG
Sbjct 1 MRPLRHLVHTVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQAKEFAPG 60
Query 66 AVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRA 125
AVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRA
Sbjct 61 AVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRA 120
Query 126 LTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLL 185
LTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLL
Sbjct 121 LTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLL 180
Query 186 DEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
DEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLRARAQ
Sbjct 181 DEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLRARAQ 239
>gi|308231902|ref|ZP_07663952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|308370789|ref|ZP_07667017.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|308374372|ref|ZP_07667770.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
13 more sequence titles
Length=192
Score = 381 bits (978), Expect = 5e-104, Method: Compositional matrix adjust.
Identities = 191/192 (99%), Positives = 192/192 (100%), Gaps = 0/192 (0%)
Query 53 LAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIP 112
+AETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIP
Sbjct 1 MAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIP 60
Query 113 LLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGML 172
LLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGML
Sbjct 61 LLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGML 120
Query 173 GRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIE 232
GRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIE
Sbjct 121 GRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIE 180
Query 233 ITDQHGLRARAQ 244
ITDQHGLRARAQ
Sbjct 181 ITDQHGLRARAQ 192
>gi|308369498|ref|ZP_07666743.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|308372027|ref|ZP_07667286.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308373212|ref|ZP_07667535.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308327330|gb|EFP16181.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|308334595|gb|EFP23446.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308338382|gb|EFP27233.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
Length=192
Score = 377 bits (968), Expect = 7e-103, Method: Compositional matrix adjust.
Identities = 190/192 (99%), Positives = 191/192 (99%), Gaps = 0/192 (0%)
Query 53 LAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIP 112
+AETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIP
Sbjct 1 MAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIP 60
Query 113 LLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGML 172
LLLEMPMVYTGRALTQATCLFLD QAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGML
Sbjct 61 LLLEMPMVYTGRALTQATCLFLDWQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGML 120
Query 173 GRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIE 232
GRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIE
Sbjct 121 GRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIE 180
Query 233 ITDQHGLRARAQ 244
ITDQHGLRARAQ
Sbjct 181 ITDQHGLRARAQ 192
>gi|240171051|ref|ZP_04749710.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=244
Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 182/244 (75%), Positives = 209/244 (86%), Gaps = 0/244 (0%)
Query 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK 60
M+D PLRHLV A+ G Q SEAQVR AAW+ARCVGRG SAPLH DVSALAE LQ +
Sbjct 1 MSDHPASPLRHLVQALGGAQRVSEAQVRHAAWVARCVGRGASAPLHPSDVSALAENLQAR 60
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
+F+PGAVVF AD+ A GV IVR G IELAVGS RRR VV++L PGDVDGDIPLLL+MP
Sbjct 61 DFSPGAVVFLADRAAGGVCIVRQGRIELAVGSGRRRVVVDVLRPGDVDGDIPLLLDMPPP 120
Query 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
YT RALT ++CLFLDRQAF+RLLATHPAI+RRWLSSVAQRVST+Q RL+G+LGRPL AQ+
Sbjct 121 YTARALTDSSCLFLDRQAFDRLLATHPAISRRWLSSVAQRVSTSQARLIGLLGRPLSAQL 180
Query 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
AQLLLDEA++AR+ELAQRT+AAMLG QRPSINK++K+FERD+LI VGYAVIEI D+ GLR
Sbjct 181 AQLLLDEAVEARVELAQRTIAAMLGVQRPSINKVIKDFERDQLIRVGYAVIEIIDEGGLR 240
Query 241 ARAQ 244
AR Q
Sbjct 241 ARTQ 244
>gi|183981635|ref|YP_001849926.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183174961|gb|ACC40071.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=244
Score = 324 bits (830), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 163/244 (67%), Positives = 189/244 (78%), Gaps = 0/244 (0%)
Query 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK 60
M++R R V TGG PSE+QVR AAW+ARCVGRG +APLH +D++ALA TL +
Sbjct 1 MSERRGSGFREAVTLFTGGAQPSESQVRHAAWVARCVGRGAAAPLHPNDLTALAGTLSQR 60
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
+F GAV+F+ Q GVWIVR G IELAVGS RRRAVV++L GDVDGDIPLLLEMPM
Sbjct 61 QFTSGAVLFNLGQDPTGVWIVRQGQIELAVGSGRRRAVVDVLRGGDVDGDIPLLLEMPMA 120
Query 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
YT RAL +TCL+LDR FE LLA HP IARRWLSSVAQRVS Q RL+ +LGRPLPAQV
Sbjct 121 YTARALEDSTCLYLDRANFESLLAGHPNIARRWLSSVAQRVSAGQARLIALLGRPLPAQV 180
Query 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
AQLLLDE+ + ++LAQRTL+AMLG QRPS+NKILK FERD LI VGYA I I D +GL
Sbjct 181 AQLLLDESSEGSVQLAQRTLSAMLGVQRPSLNKILKGFERDGLIAVGYAEISIVDVNGLS 240
Query 241 ARAQ 244
ARA+
Sbjct 241 ARAR 244
>gi|118618730|ref|YP_907062.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118570840|gb|ABL05591.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=244
Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/242 (67%), Positives = 186/242 (77%), Gaps = 0/242 (0%)
Query 1 MADRSVRPLRHLVHAVTGGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVK 60
M++R R V TGG PSE+QVR AAW+ARCVGRG +APL+ +D++ALA TL +
Sbjct 1 MSERRGSGFRQAVTLFTGGAQPSESQVRHAAWVARCVGRGAAAPLYPNDLTALAGTLSQR 60
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMV 120
+F GAV+F+ Q GVWIVR G IELAVGS RRRAVV++L DVDGDIPLLLEMPM
Sbjct 61 QFTSGAVLFNLGQDPTGVWIVRQGQIELAVGSGRRRAVVDVLRGRDVDGDIPLLLEMPMA 120
Query 121 YTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQV 180
YT RAL +TCL+LDR FE LLA HP IARRWLSSVAQRVS Q RL+ +LGRPLPAQV
Sbjct 121 YTARALEDSTCLYLDRANFESLLAGHPNIARRWLSSVAQRVSAGQARLIALLGRPLPAQV 180
Query 181 AQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
AQLLLDE+ + ++LAQRTL+AMLG QRPS+NKILK FERD LI VGYA I I D +GL
Sbjct 181 AQLLLDESSEGSVQLAQRTLSAMLGVQRPSLNKILKGFERDGLIAVGYAEISIVDVNGLS 240
Query 241 AR 242
AR
Sbjct 241 AR 242
>gi|331695134|ref|YP_004331373.1| Crp/Fnr family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326949823|gb|AEA23520.1| transcriptional regulator, Crp/Fnr family [Pseudonocardia dioxanivorans
CB1190]
Length=245
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/218 (63%), Positives = 166/218 (77%), Gaps = 0/218 (0%)
Query 18 GGQPPSEAQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADG 77
G P ++ +RQAAW+ARCVGRG +APL R DV ALA TL+ + + GAV+F ADG
Sbjct 19 GTGPAADLAIRQAAWVARCVGRGEAAPLGRADVDALAATLRTRTYERGAVLFRGGDAADG 78
Query 78 VWIVRHGLIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQ 137
VWIV+ G +EL+VG+ RRR+VV +L PGDVDGDI LL+MP+ YT RAL + T L LD
Sbjct 79 VWIVQRGRVELSVGAGRRRSVVYVLQPGDVDGDIQHLLDMPLTYTARALDEVTVLSLDAA 138
Query 138 AFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLLDEAIDARIELAQ 197
AFE+LLA HP IARRWLSSVAQR++T+Q R++G+LGR L QVA+LLLDEA+D + L Q
Sbjct 139 AFEKLLAEHPQIARRWLSSVAQRLATSQSRIVGLLGRSLTEQVARLLLDEAVDGEVPLPQ 198
Query 198 RTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITD 235
RTLAAMLG QRPS+NKILKEFER LI V YA I + D
Sbjct 199 RTLAAMLGVQRPSLNKILKEFERAGLIEVRYAAIGLRD 236
>gi|119716315|ref|YP_923280.1| cyclic nucleotide-binding protein [Nocardioides sp. JS614]
gi|119536976|gb|ABL81593.1| cyclic nucleotide-binding protein [Nocardioides sp. JS614]
Length=230
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/215 (47%), Positives = 137/215 (64%), Gaps = 0/215 (0%)
Query 25 AQVRQAAWIARCVGRGGSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHG 84
A +R A W++RCVGR G+ PL +DV LA ++V++ A G + + V IVR G
Sbjct 9 AALRDALWVSRCVGRAGTTPLRLEDVEELARFIRVRQLAAGEPLARVGEEPAAVCIVREG 68
Query 85 LIELAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLA 144
+ELAV R V+ L GD+DGDI +LL + M Y RA+ TCL LDR AFE LLA
Sbjct 69 CLELAVHGSAGRQVIQTLRAGDIDGDIQMLLGLRMPYETRAIVDTTCLMLDRAAFEELLA 128
Query 145 THPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLLDEAIDARIELAQRTLAAML 204
THP ++RRWL+SV+QR++ + RL +LG PL QVAQLLL+E +D + L Q T+AA+L
Sbjct 129 THPQVSRRWLTSVSQRLARSHSRLTSLLGEPLEIQVAQLLLEEHVDGVVNLTQTTVAALL 188
Query 205 GAQRPSINKILKEFERDRLITVGYAVIEITDQHGL 239
G +RPS+N++L+ F L+ + Y + I D L
Sbjct 189 GVRRPSVNRVLRRFAARGLVELSYGRVHILDTAAL 223
>gi|331695142|ref|YP_004331381.1| Crp/Fnr family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326949831|gb|AEA23528.1| transcriptional regulator, Crp/Fnr family [Pseudonocardia dioxanivorans
CB1190]
Length=241
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/213 (43%), Positives = 126/213 (60%), Gaps = 0/213 (0%)
Query 28 RQAAWIARCVGRGGSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIE 87
R A W+ +C+ + + DV+ LA L V+ GA F + DGV ++R G IE
Sbjct 24 RAARWLIQCLTGDTAVDVPDGDVAELAAHLAVRILPAGADAFASGDRPDGVSVIRSGAIE 83
Query 88 LAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHP 147
L +G R V +L GDV GDIPLLL+ Y RA T TCL++ + F RL++ P
Sbjct 84 LMIGEGPHRRVAQVLRQGDVFGDIPLLLDRDPPYRPRAATTTTCLWIAAEDFRRLVSDRP 143
Query 148 AIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQ 207
+AR WL S A+R +Q RL+ ++ LP +VA+ LL EA D + L Q TLAAMLG
Sbjct 144 VLARVWLISCARRFFDSQARLLRLVDGALPQRVARHLLSEARDGVVALPQATLAAMLGIP 203
Query 208 RPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
RPS+N++L++FER RLI++ Y + + D GLR
Sbjct 204 RPSLNRVLRDFERRRLISLHYRQVRLLDIDGLR 236
>gi|21221872|ref|NP_627651.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
gi|6491809|emb|CAB61855.1| putative transcriptional regulatory protein [Streptomyces coelicolor
A3(2)]
Length=227
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/217 (41%), Positives = 121/217 (56%), Gaps = 2/217 (0%)
Query 28 RQAAWIARCVGRGGSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIE 87
R AAWIA C+ R P H D + LA+ L+ ++ G ++F DGVW+VR G +E
Sbjct 10 RTAAWIAGCM-RSFLPPGHIDALK-LADRLEHRQLRQGQIIFTQGTHPDGVWMVRSGELE 67
Query 88 LAVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHP 147
L G + R VV L P + GD+PLLL P V T RA T FL F L P
Sbjct 68 LVAGRGQDRVVVGTLQPCGIAGDVPLLLGKPAVCTVRARTDVQSSFLSAAGFFATLDASP 127
Query 148 AIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQ 207
A+ R WL+++A R AQ + L ++ A LLL EA D+ + +Q TLAAMLG +
Sbjct 128 ALTRAWLTALAHRHLRAQEAQVRTLQGSAESRAAWLLLREARDSAVTCSQGTLAAMLGMR 187
Query 208 RPSINKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
R ++N+++K+FER L+ VGY +E+ LR RAQ
Sbjct 188 RQTMNRVIKDFERQGLLRVGYCRLELLAVDRLRQRAQ 224
>gi|170746771|ref|YP_001753031.1| Crp/FNR family transcriptional regulator [Methylobacterium radiotolerans
JCM 2831]
gi|170653293|gb|ACB22348.1| transcriptional regulator, Crp/Fnr family [Methylobacterium radiotolerans
JCM 2831]
Length=226
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/202 (32%), Positives = 104/202 (52%), Gaps = 3/202 (1%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAV-VNI 101
A L + + +A + A ++F D ++ VR G I + GS RAV +N+
Sbjct 18 AELGPEAIETIAGLCTTRSLARHEILFQKGDPGDALYAVRRGQIRIGAGSDDGRAVTLNL 77
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PGDV G+I L P AL A ++ +AF +LLA PA+A + ++ + QR+
Sbjct 78 LGPGDVFGEIAFLDGHPRTAEAVALEPADLFVVEGRAFLKLLAGDPALAVQIINLLCQRL 137
Query 162 STAQIRLMGMLGRPLPAQVAQ--LLLDEAIDARIELAQRTLAAMLGAQRPSINKILKEFE 219
R+ PL ++A+ ++L E A I++ Q LAA +GA R S+N++L+++
Sbjct 138 RWMSARMEEATLLPLDIRLARRLIMLSEDFGAEIQVTQEELAAFVGAARESVNRVLQDWR 197
Query 220 RDRLITVGYAVIEITDQHGLRA 241
R LI +G A + + H L A
Sbjct 198 RSGLIDLGRARVTVRASHRLVA 219
>gi|255524790|ref|ZP_05391741.1| transcriptional regulator, Crp/Fnr family [Clostridium carboxidivorans
P7]
gi|296185018|ref|ZP_06853429.1| cyclic nucleotide-binding domain protein [Clostridium carboxidivorans
P7]
gi|255511563|gb|EET87852.1| transcriptional regulator, Crp/Fnr family [Clostridium carboxidivorans
P7]
gi|296050800|gb|EFG90223.1| cyclic nucleotide-binding domain protein [Clostridium carboxidivorans
P7]
Length=237
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/208 (25%), Positives = 108/208 (52%), Gaps = 12/208 (5%)
Query 45 LHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRR-RRAVVNILH 103
L+ +++ + +T+ KE+A G VVF A+ ++ + G I+L ++ + ++++L
Sbjct 27 LNNEELLKIVKTINHKEYAKGDVVFTEGNVANTLFFINEGKIKLYKYTKDGKEQILHVLS 86
Query 104 PGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVST 163
GD G++ L+ + +A+ + L + + ++ +P I + L +V +R+S
Sbjct 87 EGDFFGELELIKPSKYGFNSKAIIDSKICTLTKDEMKEIMMKNPEIGIKVLETVGERLSK 146
Query 164 AQIRLMGMLGRPLPAQVAQLLLD------EAIDARIE----LAQRTLAAMLGAQRPSINK 213
+ + + + +++A LL D E I+ I L++ +A +G R +I++
Sbjct 147 VESLVQNLATNDVDSRMAYLLTDLMEKYGENIEKNISIELPLSREEMANFIGVTRETISR 206
Query 214 ILKEFERDRLIT-VGYAVIEITDQHGLR 240
LK+FE ++LI VG +I I D+ GL+
Sbjct 207 KLKKFEDEKLIKIVGTKIIIILDEEGLK 234
>gi|328545077|ref|YP_004305186.1| Cyclic nucleotide-binding:Bacterial regulatory protein, Crp [Polymorphum
gilvum SL003B-26A1]
gi|326414819|gb|ADZ71882.1| Cyclic nucleotide-binding:Bacterial regulatory protein, Crp [Polymorphum
gilvum SL003B-26A1]
Length=229
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/202 (29%), Positives = 100/202 (50%), Gaps = 14/202 (6%)
Query 45 LHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRAVVNILH 103
L D L++ + PGA++F A +G + + G +++++ S ++ +L
Sbjct 17 LSHDLAEGLSKLARPMSVTPGAILFEAGDPGNGCYAILDGSMKVSMLSVDGDEQLLAVLG 76
Query 104 PGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVST 163
PG+V G++ LL P T AL + F+D+ AFER +P + R LS V +R+
Sbjct 77 PGNVVGELALLDGRPRSATVTALKASRLAFIDKSAFERFADENPGLYRHMLSIVGKRLRQ 136
Query 164 AQIRLMGMLGRPLPAQVAQLLLD------EAIDA-----RIELAQRTLAAMLGAQRPSIN 212
+ L PLP +VAQ LL + +D +L+Q +A M GA R +++
Sbjct 137 SNDILAARSFLPLPGRVAQTLLQLSETFGKTLDGDRILIHYKLSQSDIANMAGAARENVS 196
Query 213 KILKEFERDRLIT--VGYAVIE 232
++L +++R I+ GY +E
Sbjct 197 RVLNDWKRSGTISRISGYYCLE 218
>gi|334338141|ref|YP_004543293.1| transcriptional regulator, Crp/Fnr family [Isoptericola variabilis
225]
gi|334108509|gb|AEG45399.1| transcriptional regulator, Crp/Fnr family [Isoptericola variabilis
225]
Length=225
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/192 (30%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query 42 SAPLHRD----DVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAV-GSRRRR 96
SAPL D + AL E++ E G V+F + D ++++ G I+L S R
Sbjct 8 SAPLFADMDSEETKALFESMTPVELTRGDVLFREGEPGDRLYVIAQGKIKLGRRSSDGRE 67
Query 97 AVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSS 156
+++IL PG++ G++ L P T +++ A L QA + +A+HP +A L +
Sbjct 68 NLLSILGPGEMFGELSLFDPGPRTATASSVSDALVYELRHQALVQWIASHPNVATTLLGA 127
Query 157 VAQRVSTAQIRLMGMLGRPLPAQVAQLLLD----------EAIDARIELAQRTLAAMLGA 206
+A+R+ L ++ +P +VA+ LLD + I +L Q LA ++GA
Sbjct 128 LARRLRRTNETLADLVFSDVPGRVAKALLDLSARFGEPNDDGIRVAHDLTQEELAQLVGA 187
Query 207 QRPSINKILKEF 218
R ++NK L +F
Sbjct 188 SRETVNKALADF 199
>gi|118589770|ref|ZP_01547175.1| putative catabolite gene activator [Stappia aggregata IAM 12614]
gi|118437856|gb|EAV44492.1| putative catabolite gene activator [Stappia aggregata IAM 12614]
Length=233
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/206 (29%), Positives = 104/206 (51%), Gaps = 17/206 (8%)
Query 46 HRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAV-VNILHP 104
R D++A A VK + G +F + + G + + + + R V ++ LHP
Sbjct 26 SRKDLAAFA---HVKRYTAGDAIFEMGTPGQSMMAIAEGSVRITMPTPSARDVTLSELHP 82
Query 105 GDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTA 164
GD+ G+I LL RALT + L+R++ +L PA++ R + + +RV +
Sbjct 83 GDIFGEIALLDGGERSANVRALTNCKLVVLERRSLLEVLNRDPALSIRLIELLCKRVRRS 142
Query 165 QIRLM--GMLGRPLPAQVAQLLLDEAIDA---------RIELAQRTLAAMLGAQRPSINK 213
R+M G LG LP ++A+LLL + A ++ L+Q +A M+G R ++N+
Sbjct 143 DERMMEIGFLG--LPERLARLLLRITVTAPGSEAKPLTKLSLSQSEIAEMIGNTRETVNR 200
Query 214 ILKEFERDRLITVGYAVIEITDQHGL 239
L++F++ LI + + I D+ GL
Sbjct 201 CLRKFQKANLIDLKDGWLIILDRDGL 226
>gi|226226589|ref|YP_002760695.1| Crp family transcriptional regulator [Gemmatimonas aurantiaca
T-27]
gi|226089780|dbj|BAH38225.1| Crp family transcriptional regulator [Gemmatimonas aurantiaca
T-27]
Length=229
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/206 (27%), Positives = 104/206 (51%), Gaps = 6/206 (2%)
Query 45 LHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILH 103
L R V AE + + FA GA++ D +++VR G +++ VG R ++ +L
Sbjct 21 LERSAVRGFAEVTREQRFAKGALIVSEGDAGDALYVVRSGEVKVVLVGDDGREVILQVLG 80
Query 104 PGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVST 163
GD G++ L+ P A ++ L L R F R + +P +A + +++R+
Sbjct 81 VGDHFGELALIDGRPRSAHVVATHASSLLVLRRPEFRRQVEQNPKVAWELMVELSRRLRQ 140
Query 164 AQIRLMGMLGRPLPAQVAQLLLDEAIDAR-----IELAQRTLAAMLGAQRPSINKILKEF 218
A + ++ +P +VA++LL+ A +L +T+A M+GA R ++++ + EF
Sbjct 141 ADGTIGSLVLLDVPGRVAKVLLEHATPGEPASLVKQLTHQTIAQMIGASRETVSRAMSEF 200
Query 219 ERDRLITVGYAVIEITDQHGLRARAQ 244
+ +I V V+ I ++ L +RA+
Sbjct 201 QDQGMIMVQRRVVTIVNRGALESRAR 226
>gi|239814291|ref|YP_002943201.1| Crp/Fnr family transcriptional regulator [Variovorax paradoxus
S110]
gi|239800868|gb|ACS17935.1| transcriptional regulator, Crp/Fnr family [Variovorax paradoxus
S110]
Length=224
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/185 (29%), Positives = 94/185 (51%), Gaps = 8/185 (4%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRRRRAVV-NI 101
A L +++A+ + K F VV + +D ++I+ G + R R V+
Sbjct 17 ASLTSSQSASIADAIIKKRFKRAEVVVEQGKKSDALYIILTGRARVTSADNRGREVILAT 76
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
LHPGD G++ L+ + P T R Q L LDR+AF R L + ++A + + QR+
Sbjct 77 LHPGDYIGEMSLIDDEPHSATVRTEIQCDVLMLDREAFARCLPENSSMAYNIMRGLVQRL 136
Query 162 STAQIRLMGMLGRPLPAQVAQLLLDEAID-------ARIELAQRTLAAMLGAQRPSINKI 214
A ++ + + +VA+ LL+ AID R +++++ LA M+GA R ++++
Sbjct 137 RHADRKIESLALMDVYGRVARSLLEFAIDDGAGNLKVRDKISRQDLAKMVGASREMVSRV 196
Query 215 LKEFE 219
+K+ E
Sbjct 197 MKDLE 201
>gi|152964394|ref|YP_001360178.1| Crp/Fnr family transcriptional regulator [Kineococcus radiotolerans
SRS30216]
gi|151358911|gb|ABS01914.1| putative transcriptional regulator, Crp/Fnr family [Kineococcus
radiotolerans SRS30216]
Length=242
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/187 (30%), Positives = 93/187 (50%), Gaps = 11/187 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVG-SRRRRAVVNI 101
A L D L ET++ G +F + D V++VR G I+L R ++ +
Sbjct 30 AALDDDAAGELLETMESVHLGRGEQLFAEGEPGDRVYVVRTGKIKLVRSWPDGRENLLAV 89
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG++ G++ L P + RA+++A + L R LA P +AR L ++AQR+
Sbjct 90 LGPGEMFGELSLFDPGPRTSSARAVSEAELIALGHDDMLRWLARRPEVARHLLQALAQRL 149
Query 162 STAQIRLMGMLGRPLPAQVAQLLLDEA-------IDARI---ELAQRTLAAMLGAQRPSI 211
+ L ++ +P +VA+ LLD A D ++ +L Q LA ++GA R ++
Sbjct 150 RRTNVTLADLVFTDVPGRVAKALLDLARRFGRPIADGQLVAHDLTQEELAQLVGASRETV 209
Query 212 NKILKEF 218
NK L +F
Sbjct 210 NKALADF 216
>gi|269957813|ref|YP_003327602.1| Crp/Fnr family transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
gi|269306494|gb|ACZ32044.1| transcriptional regulator, Crp/Fnr family [Xylanimonas cellulosilytica
DSM 15894]
Length=225
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/192 (29%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query 42 SAPLH--RDDVSA--LAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAV-GSRRRR 96
SAPL DDV + L ET+ E + G V+F D ++++ G I+L S R
Sbjct 8 SAPLFADMDDVESRGLLETMVPVELSRGDVLFREGDPGDRLYVIAQGKIKLGRRSSDGRE 67
Query 97 AVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSS 156
++++L PG++ G++ L P T +++ + C L A + + HP++A L +
Sbjct 68 NLLSVLGPGEMFGELSLFDPGPRTATASSVSDSVCYELRHSALVQWVNAHPSVATHLLGA 127
Query 157 VAQRVSTAQIRLMGMLGRPLPAQVAQLLL----------DEAIDARIELAQRTLAAMLGA 206
+A+R+ L ++ +P +VA+ LL DE + +L Q LA ++GA
Sbjct 128 LARRLRRTNETLADLVFSDVPGRVAKALLDLSTRFGEPSDEGVRVAHDLTQEELAQLVGA 187
Query 207 QRPSINKILKEF 218
R ++NK L +F
Sbjct 188 SRETVNKALADF 199
>gi|254504079|ref|ZP_05116230.1| cyclic nucleotide-binding domain protein [Labrenzia alexandrii
DFL-11]
gi|222440150|gb|EEE46829.1| cyclic nucleotide-binding domain protein [Labrenzia alexandrii
DFL-11]
Length=229
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/189 (31%), Positives = 95/189 (51%), Gaps = 14/189 (7%)
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRAVVNILHPGDVDGDIPLLLEMPM 119
+ A A +F +G + V G +++++ S ++ +L PGD+ G++ LL P
Sbjct 33 KMAANATLFENGDPGNGCYAVLEGSLKVSILSVDGDEQLLAVLGPGDLVGELALLDGRPR 92
Query 120 VYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQ 179
T L +A F+++ AFER +PA+ R LS V +R+ A L PLP +
Sbjct 93 SATVSVLKEAQLAFIEKSAFERFADENPAVYRHMLSIVGKRLRHANDVLAARSFLPLPGR 152
Query 180 VAQLLLDEA-------IDARI----ELAQRTLAAMLGAQRPSINKILKEFERDRLIT--V 226
VAQ LL A D R+ +L+Q +A M GA R +++++L +++R I+
Sbjct 153 VAQTLLQLAETFGKPLDDGRVLIHYKLSQADIANMAGAARENVSRVLNDWKRSGTISRIS 212
Query 227 GYAVIEITD 235
GY +E D
Sbjct 213 GYYCLEQVD 221
>gi|225175315|ref|ZP_03729310.1| transcriptional regulator, Crp/Fnr family [Dethiobacter alkaliphilus
AHT 1]
gi|225169067|gb|EEG77866.1| transcriptional regulator, Crp/Fnr family [Dethiobacter alkaliphilus
AHT 1]
Length=229
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/207 (23%), Positives = 106/207 (52%), Gaps = 11/207 (5%)
Query 45 LHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRR-RRAVVNILH 103
L +D+ +A + + +A G+V+F + + ++++R G ++++ + R ++++L
Sbjct 20 LSEEDLGMVAAVMIERSYAKGSVLFMEGEQGEALFVIRQGRVKISKSTADGREQILHMLK 79
Query 104 PGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVST 163
GD+ ++ L P T A+ C L E+L+ +HP +A + L +++R+
Sbjct 80 DGDIFAEVVLFDRGPYPATAEAVEDTQCWLLRSADMEKLMQSHPLLAIKLLRVMSKRLRQ 139
Query 164 AQIRLMGMLGRPLPAQVAQLLL----------DEAIDARIELAQRTLAAMLGAQRPSINK 213
AQ+ + + ++A LLL + I ++L ++ +A+M+G R ++ +
Sbjct 140 AQLLVRDLALHDAYGRMAGLLLRFARREGKQTKDGIVLELDLTRQEMASMIGTSRETVAR 199
Query 214 ILKEFERDRLITVGYAVIEITDQHGLR 240
IL F++D ++T+ I + D+ LR
Sbjct 200 ILSRFQKDGVLTLDKQRIVLLDEEKLR 226
>gi|118590661|ref|ZP_01548062.1| Cyclic nucleotide-binding:Bacterial regulatory protein, Crp [Stappia
aggregata IAM 12614]
gi|118436637|gb|EAV43277.1| Cyclic nucleotide-binding:Bacterial regulatory protein, Crp [Stappia
aggregata IAM 12614]
Length=229
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/189 (31%), Positives = 97/189 (52%), Gaps = 14/189 (7%)
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRAVVNILHPGDVDGDIPLLLEMPM 119
+ + G ++F +G + V G +++++ S ++ +L PGD+ G++ LL P
Sbjct 33 KISAGTILFENGDPGNGCYAVLEGSLKVSLLSVEGDEQLLAVLGPGDLVGELALLDGRPR 92
Query 120 VYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQ 179
T AL +A F+D+ AF+R +PA+ R LS V +R+ A L PLP +
Sbjct 93 SATVIALKEAQLAFIDKAAFQRFADENPAVYRHMLSIVGKRLRHANDVLAARSFLPLPGR 152
Query 180 VAQLLLDEA-------IDARI----ELAQRTLAAMLGAQRPSINKILKEFERDRLIT--V 226
VAQ LL A D R+ +L+Q +A M GA R +++++L +++R I+
Sbjct 153 VAQTLLQLAETFGKPLDDGRLLIHYKLSQADIANMAGAARENVSRVLNDWKRAGTISRIS 212
Query 227 GYAVIEITD 235
GY +E D
Sbjct 213 GYYCLEQMD 221
>gi|224371120|ref|YP_002605284.1| cAMP-bindin transcriptional regulator (Crp/Fnr family protein)
[Desulfobacterium autotrophicum HRM2]
gi|223693837|gb|ACN17120.1| cAMP-bindin transcriptional regulator (Crp/Fnr family protein)
[Desulfobacterium autotrophicum HRM2]
Length=225
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/208 (25%), Positives = 101/208 (49%), Gaps = 14/208 (6%)
Query 41 GSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHG---LIELAVGSRRRRA 97
G P + ++ A+ E V++ G ++F +G ++V G + +L+ G + +
Sbjct 16 GLDPENLKEIIAICERRSVQK---GEIIFTDGDACNGFYVVETGKVKVFKLSFGGKEQ-- 70
Query 98 VVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSV 157
+++I PG G++P+ + A+T A+ +F R+ F L+ THP +A L+ +
Sbjct 71 ILHIYGPGKPFGEVPVFTGKSFPASSVAITNASLIFFPRKRFVELILTHPNLALNMLAVL 130
Query 158 AQRVSTAQIRLMGMLGRPLPAQVAQLLLDEAID------ARIELAQRTLAAMLGAQRPSI 211
+ R+ I + + + +PA++A L+ D + +++ LA +LG +I
Sbjct 131 SMRLKEFTIMVENLALKEVPARLASYLMASIKDRDKPGLVNLPVSKTQLAGILGTTPETI 190
Query 212 NKILKEFERDRLITVGYAVIEITDQHGL 239
++IL + ITV +I I D GL
Sbjct 191 SRILARLTNEGFITVDNRLINIVDPDGL 218
>gi|336180119|ref|YP_004585494.1| Crp/Fnr family transcriptional regulator [Frankia symbiont of
Datisca glomerata]
gi|334861099|gb|AEH11573.1| transcriptional regulator, Crp/Fnr family [Frankia symbiont of
Datisca glomerata]
Length=239
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/192 (30%), Positives = 93/192 (49%), Gaps = 16/192 (8%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNI 101
A L D AL + L+ + G V+F +T D V+++ G +++ S R ++ +
Sbjct 22 AGLSEQDRQALNDHLERQNVTRGDVLFREGETGDRVFVILAGKVKIGRAASDGRENLLMV 81
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
+ PGD+ G++ L P + A+T A+ + L+ A LAT P A L +AQR+
Sbjct 82 MGPGDLFGELSLFDPGPRTASATAVTDASLVSLEHTALRPWLATRPEAASLLLRVLAQRL 141
Query 162 STAQIRLMGMLGRPLPAQVAQLLLD-------------EAIDARIE--LAQRTLAAMLGA 206
+ M+ +P +VA+ LLD EA R+E L Q LA ++GA
Sbjct 142 RRTNDSMADMVFTDVPGRVAKALLDLAERFGEPAQPGNEAAGVRVEHGLTQEELAQLVGA 201
Query 207 QRPSINKILKEF 218
R ++NK L +F
Sbjct 202 SRETVNKALADF 213
>gi|289704681|ref|ZP_06501109.1| cyclic nucleotide-binding domain protein [Micrococcus luteus
SK58]
gi|289558635|gb|EFD51898.1| cyclic nucleotide-binding domain protein [Micrococcus luteus
SK58]
Length=225
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/209 (30%), Positives = 101/209 (49%), Gaps = 12/209 (5%)
Query 48 DDVSA-LAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILHPG 105
D+V A L L E + GA FH D ++++ G I+L S R +V +L PG
Sbjct 17 DEVFAILTSELTEVELSRGASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPG 76
Query 106 DVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQ 165
++ G++ L P T A++ L + R +A+ P ++ + L ++AQR+S
Sbjct 77 EIFGEMALFNPAPRNATATAVSATRLAGLRHENLRRAIASSPDVSVQLLQALAQRLSKTN 136
Query 166 IRLMGMLGRPLPAQVAQLLLD-------EAIDARI---ELAQRTLAAMLGAQRPSINKIL 215
L ++ +P +VA+ LLD A D + +L Q LA ++GA R ++NK L
Sbjct 137 ESLADLVFSDVPGRVAKALLDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKAL 196
Query 216 KEFERDRLITVGYAVIEITDQHGLRARAQ 244
EF + I + + I D LR R++
Sbjct 197 AEFVQRGWIRLENRAVVILDLQRLRQRSR 225
>gi|254822500|ref|ZP_05227501.1| Crp/FNR family transcriptional regulator [Mycobacterium intracellulare
ATCC 13950]
Length=219
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (30%), Positives = 95/194 (49%), Gaps = 11/194 (5%)
Query 61 EFAPGAVVFHADQTADGVWIVRHGLIELAV-GSRRRRAVVNILHPGDVDGDIPLLLEMPM 119
EF PG +F D ++++ G + +++ R V IL P D+ G++ + P
Sbjct 5 EFRPGQTIFAQGDPGDRLYLIAEGTVTISLRDPAGRTGVRAILGPADIFGELAVFDPAPR 64
Query 120 VYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQ 179
T ALT+ L+LDR + +A PA+A + L ++ +RV A+ +L+ M+ + A+
Sbjct 65 ACTATALTEVRALWLDRASLRASMARDPALAEQLLRALTRRVRAAERQLVEMVSSDVNAR 124
Query 180 VAQLLL----------DEAIDARIELAQRTLAAMLGAQRPSINKILKEFERDRLITVGYA 229
VA+ LL A+ EL+Q LA ++GA R S+NK L F I++
Sbjct 125 VARQLLALGRRFGTREGGALRVAHELSQDELAQLVGADRVSVNKALGSFTTRGWISLRGK 184
Query 230 VIEITDQHGLRARA 243
+ I + L RA
Sbjct 185 TVVIINPDALARRA 198
>gi|154508113|ref|ZP_02043755.1| hypothetical protein ACTODO_00606 [Actinomyces odontolyticus
ATCC 17982]
gi|315605660|ref|ZP_07880693.1| crp/Fnr family transcriptional regulator [Actinomyces sp. oral
taxon 180 str. F0310]
gi|153797747|gb|EDN80167.1| hypothetical protein ACTODO_00606 [Actinomyces odontolyticus
ATCC 17982]
gi|315312615|gb|EFU60699.1| crp/Fnr family transcriptional regulator [Actinomyces sp. oral
taxon 180 str. F0310]
Length=227
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (30%), Positives = 86/165 (53%), Gaps = 11/165 (6%)
Query 65 GAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTG 123
G +F D ++IV G ++L S R +++ +L PG++ G++ L P T
Sbjct 37 GETLFDEGDLGDRLYIVTEGKVKLGHTSSDGRESLLAVLGPGEIIGELTLFDPGPRSTTA 96
Query 124 RALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQL 183
A++ A+ L+L+ + +L T+P +A+ L ++AQR+ L ++ +P +VA+
Sbjct 97 TAVSPASLLYLEHEDLMHVLDTNPTLAKHMLRALAQRLRRTNESLSDLVFSDVPGRVAKA 156
Query 184 LLD------EAIDARI----ELAQRTLAAMLGAQRPSINKILKEF 218
LLD A D + +L Q LA ++GA R ++NK L +F
Sbjct 157 LLDLADRFGTATDKGVHVPHDLTQEELAQLVGASRETVNKSLADF 201
>gi|293190617|ref|ZP_06608908.1| transcriptional regulator, Crp/Fnr family [Actinomyces odontolyticus
F0309]
gi|292820834|gb|EFF79792.1| transcriptional regulator, Crp/Fnr family [Actinomyces odontolyticus
F0309]
Length=227
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (30%), Positives = 86/165 (53%), Gaps = 11/165 (6%)
Query 65 GAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTG 123
G +F D ++IV G ++L S R +++ +L PG++ G++ L P T
Sbjct 37 GETLFDEGDLGDRLYIVTEGKVKLGHTSSDGRESLLAVLGPGEIIGELTLFDPGPRSTTA 96
Query 124 RALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQL 183
A++ A+ L+L+ + +L T+P +A+ L ++AQR+ L ++ +P +VA+
Sbjct 97 TAVSPASLLYLEHEDLMHVLDTNPTLAKHMLRALAQRLRRTNESLSDLVFSDVPGRVAKA 156
Query 184 LLD------EAIDARI----ELAQRTLAAMLGAQRPSINKILKEF 218
LLD A D + +L Q LA ++GA R ++NK L +F
Sbjct 157 LLDLADRFGTATDKGVHVPHDLTQEELAQLVGASRETVNKSLADF 201
>gi|239918307|ref|YP_002957865.1| cAMP-binding protein [Micrococcus luteus NCTC 2665]
gi|281415497|ref|ZP_06247239.1| cAMP-binding protein [Micrococcus luteus NCTC 2665]
gi|239839514|gb|ACS31311.1| cAMP-binding protein [Micrococcus luteus NCTC 2665]
Length=225
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/209 (30%), Positives = 101/209 (49%), Gaps = 12/209 (5%)
Query 48 DDVSA-LAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILHPG 105
D+V A L L E + GA FH D ++++ G I+L S R +V +L PG
Sbjct 17 DEVFAILTSELTEVELSRGASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPG 76
Query 106 DVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQ 165
++ G++ L P T A++ L + R +A+ P ++ + L ++AQR+S
Sbjct 77 EIFGEMALFNPAPRNATATAVSATRLAGLRHENLRRAIASSPDVSVQRLQALAQRLSKTN 136
Query 166 IRLMGMLGRPLPAQVAQLLLD-------EAIDARI---ELAQRTLAAMLGAQRPSINKIL 215
L ++ +P +VA+ LLD A D + +L Q LA ++GA R ++NK L
Sbjct 137 ESLADLVFSDVPGRVAKALLDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKAL 196
Query 216 KEFERDRLITVGYAVIEITDQHGLRARAQ 244
EF + I + + I D LR R++
Sbjct 197 AEFVQRGWIRLENRAVVILDLQRLRQRSR 225
>gi|320094947|ref|ZP_08026669.1| crp/Fnr family transcriptional regulator [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319978105|gb|EFW09726.1| crp/Fnr family transcriptional regulator [Actinomyces sp. oral
taxon 178 str. F0338]
Length=227
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (29%), Positives = 85/165 (52%), Gaps = 11/165 (6%)
Query 65 GAVVFHADQTADGVWIVRHGLIELAVGSRR-RRAVVNILHPGDVDGDIPLLLEMPMVYTG 123
G +F D ++IV G ++L S R +++ +L PG++ G++ L P T
Sbjct 37 GETLFDEGDLGDRLYIVTEGKVKLGHTSNDGRESLLAVLGPGEIIGELTLFDPGPRSTTA 96
Query 124 RALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQL 183
A++ A+ LFL+ + +L T+P +A+ L ++AQR+ L ++ +P +VA+
Sbjct 97 TAVSPASLLFLEHEDLMHVLDTNPTLAKHMLRALAQRLRRTNESLSDLVFSDVPGRVAKA 156
Query 184 LL----------DEAIDARIELAQRTLAAMLGAQRPSINKILKEF 218
LL D+ + +L Q LA ++GA R ++NK L +F
Sbjct 157 LLDLADRFGTSTDKGVHVPHDLTQEELAQLVGASRETVNKSLADF 201
>gi|296130927|ref|YP_003638177.1| Crp/Fnr family transcriptional regulator [Cellulomonas flavigena
DSM 20109]
gi|296022742|gb|ADG75978.1| transcriptional regulator, Crp/Fnr family [Cellulomonas flavigena
DSM 20109]
Length=220
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (29%), Positives = 92/187 (50%), Gaps = 11/187 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRR-RRAVVNI 101
A + + AL ++++V + A G V+FH + D +++VR G I+L S R ++ +
Sbjct 8 AGMDEESSRALIDSMKVLDAARGDVLFHEGEPGDRLFLVRDGKIKLGRRSNDGRENLLAV 67
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG++ G++ L P T + A L L + LA P +A L ++A+R+
Sbjct 68 LGPGEMFGELSLFDPGPRTATATVVADAVVLELGHRDLVTWLADKPKVAEHLLQALARRL 127
Query 162 STAQIRLMGMLGRPLPAQVAQLLL----------DEAIDARIELAQRTLAAMLGAQRPSI 211
L ++ +P +VA+ LL DE I +L Q LA ++GA R ++
Sbjct 128 RRTNEALADLVFSDVPGRVAKALLDLSTRFGQQVDEGIRVAHDLTQEELAQLVGASRETV 187
Query 212 NKILKEF 218
NK L +F
Sbjct 188 NKALADF 194
>gi|269793829|ref|YP_003313284.1| cAMP-binding protein [Sanguibacter keddieii DSM 10542]
gi|269096014|gb|ACZ20450.1| cAMP-binding protein [Sanguibacter keddieii DSM 10542]
Length=226
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/187 (28%), Positives = 92/187 (50%), Gaps = 11/187 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNI 101
A + + L ++ E A G V+F Q D ++++ G I+L S R ++ +
Sbjct 14 ATMEEAETRGLLASMSKVELARGDVLFTEGQPGDRLYVISEGKIKLGRSSSDGRENLIAV 73
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG++ G++ L P A++ + L A R+L +P +A+ L+++A+R+
Sbjct 74 LGPGEMFGELSLFDPGPRSLGASAVSDSVVYELGHDALLRVLEENPGVAKHLLTALARRL 133
Query 162 STAQIRLMGMLGRPLPAQVAQLLLD------EAIDARI----ELAQRTLAAMLGAQRPSI 211
L ++ +P +VA+ LLD E +D I +L Q LA ++GA R ++
Sbjct 134 RRTNEALADLVFSDVPGRVAKALLDLSTRFGEQVDEGIRVAHDLTQEELAQLVGASRETV 193
Query 212 NKILKEF 218
NK L +F
Sbjct 194 NKALADF 200
>gi|291541822|emb|CBL14932.1| cAMP-binding proteins-catabolite gene activator and regulatory
subunit of cAMP-dependent protein kinases [Ruminococcus bromii
L2-63]
Length=217
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/202 (23%), Positives = 94/202 (47%), Gaps = 1/202 (0%)
Query 39 RGGSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRA 97
R ++ +H + S + ++ V+++A +++ TA ++ G +++ + S
Sbjct 9 RHANSTVHENMQSLIEQSGSVRKYAKDEIIYLQGDTAQSFCYIKKGSVKVYMNSVDGNEK 68
Query 98 VVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSV 157
+N G++ G+ + P V + +ALT + +D++ ++A HP +A L +
Sbjct 69 TLNTARHGEIIGEGAFFDKKPRVSSAKALTNTEVIMIDKKRLTDIIAQHPTLAFELLEIL 128
Query 158 AQRVSTAQIRLMGMLGRPLPAQVAQLLLDEAIDARIELAQRTLAAMLGAQRPSINKILKE 217
A R+ +L M A++A LLL+ D + + +A +G R +++K L
Sbjct 129 ANRIRLLSSQLDSMTFMQADARIAGLLLESEHDGIVAITHEEIANTVGVSRVTVSKTLSR 188
Query 218 FERDRLITVGYAVIEITDQHGL 239
F + I+ Y I I + GL
Sbjct 189 FAKSGYISTEYRRILIKSREGL 210
>gi|319949582|ref|ZP_08023627.1| CRP/FNR family transcriptional regulator [Dietzia cinnamea P4]
gi|319436758|gb|EFV91833.1| CRP/FNR family transcriptional regulator [Dietzia cinnamea P4]
Length=234
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 107/210 (51%), Gaps = 19/210 (9%)
Query 50 VSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRR----RRAVVNILHPG 105
VSAL + L +E++ G V+ + D ++IV G ++L SR+ R +++IL P
Sbjct 29 VSALRDDLTREEYSKGDVIIREGEQGDSLYIVTSGKVKL---SRKAPDGRENLLSILGPS 85
Query 106 DVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQ 165
D+ G++ + P + +T T +DR A +R +A P I+ + L +A+R+
Sbjct 86 DMFGELSIFDPGPRTSSAVCVTDVTVQAMDRSALKRWIAERPEISDQLLRVLARRLRRTN 145
Query 166 IRLMGMLGRPLPAQVAQLLL--------DEAIDARI--ELAQRTLAAMLGAQRPSINKIL 215
L ++ +P +VA+ LL E + R+ +L Q +A ++GA R ++NK L
Sbjct 146 NNLADLIFTDVPGRVAKALLQLAQRFGTQEGGNIRVTHDLTQEEIAQLVGASRETVNKAL 205
Query 216 KEF-ERDRLITVGYAVIEITDQHGLRARAQ 244
EF R L G +VI I+D L RA+
Sbjct 206 AEFAHRGWLRLEGKSVI-ISDTERLARRAR 234
>gi|119714605|ref|YP_921570.1| cyclic nucleotide-binding protein [Nocardioides sp. JS614]
gi|119535266|gb|ABL79883.1| transcriptional regulator [Nocardioides sp. JS614]
Length=225
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/179 (30%), Positives = 87/179 (49%), Gaps = 11/179 (6%)
Query 51 SALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILHPGDVDG 109
+AL ++ + G V+FH + D ++IV G ++L S R ++ IL PG + G
Sbjct 21 TALRASMTESKLRRGDVLFHEGDSGDKLYIVLDGKVKLGRTSSDGRENLLAILGPGQMFG 80
Query 110 DIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLM 169
++ L P T A+T AT L + R L P +AR L+ +A R+ A +
Sbjct 81 ELSLFDPGPRSATVTAVTDATFASLSHEDLLRWLEGRPVVARGLLTQLAGRLRKANDVVA 140
Query 170 GMLGRPLPAQVAQLLL----------DEAIDARIELAQRTLAAMLGAQRPSINKILKEF 218
++ +P +VA+ LL D+ + +L Q LA ++GA R ++NK L +F
Sbjct 141 DLVFSDVPGRVAKALLDLADRFGRSADDGVHVHHDLTQEELAQLVGASRETVNKALADF 199
>gi|16332256|ref|NP_442984.1| DNR protein [Synechocystis sp. PCC 6803]
gi|1653886|dbj|BAA18796.1| DNR protein [Synechocystis sp. PCC 6803]
gi|339275351|dbj|BAK51838.1| probable transcriptional regulator DNR [Synechocystis sp. PCC
6803]
Length=238
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/227 (26%), Positives = 106/227 (47%), Gaps = 15/227 (6%)
Query 30 AAWIARCVGRGGSAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIEL- 88
A W+++ + H + ++A+A QVK + G VVF G +IVR G +++
Sbjct 8 ALWLSKTLMFQNIDSHHLEMITAIA---QVKSYGKGDVVFKEGDKPKGFFIVRSGRVKIY 64
Query 89 AVGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPA 148
+ + ++ I H G+ +I + +P + L QA +F R F +LA HP
Sbjct 65 KIAPGGKEQILRIFHRGEHFAEIAVFDNLPFPASAATLDQAEMIFFPRSPFLEMLAQHPT 124
Query 149 IARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQLLLD-EAIDA----------RIELAQ 197
+A LSS+++ + + + + +P ++A LL +D ++L +
Sbjct 125 LALNMLSSLSRHLRHLTAVIEELSFKDVPQRLASYLLRLGGVDTGTVEVLSLWVTLDLPK 184
Query 198 RTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
LAA LG ++++ + + + LI V A I++ D LRA A+
Sbjct 185 SQLAAQLGTIPATLSRAFYQLKNEDLIAVKGAEIQLLDCDRLRALAK 231
>gi|319792072|ref|YP_004153712.1| Crp/Fnr family transcriptional regulator [Variovorax paradoxus
EPS]
gi|315594535|gb|ADU35601.1| transcriptional regulator, Crp/Fnr family [Variovorax paradoxus
EPS]
Length=224
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/177 (28%), Positives = 92/177 (52%), Gaps = 8/177 (4%)
Query 51 SALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIEL-AVGSRRRRAVVNILHPGDVDG 109
+++A+ + K F VV + +D ++I+ G + + SR R ++ LHPGD G
Sbjct 25 ASIADAIIKKRFKRAEVVVEQGKKSDALYIILTGRARVTSADSRGREVILATLHPGDYLG 84
Query 110 DIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLM 169
++ L+ + P T R Q L L R AF R L + ++A + + QR+ A ++
Sbjct 85 EMSLIDDEPHSATVRTEIQCDVLMLGRDAFARCLPENSSMAYNIMRGLVQRLRHADRKIE 144
Query 170 GMLGRPLPAQVAQLLLDEAID-------ARIELAQRTLAAMLGAQRPSINKILKEFE 219
+ + +VA+ LL+ A+D R +++++ LA M+GA R +++++K+ E
Sbjct 145 SLALMDVYGRVARSLLEFAVDDGAGNLKVRDKISRQDLAKMVGASREMVSRVMKDLE 201
>gi|317123641|ref|YP_004097753.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315587729|gb|ADU47026.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
Length=220
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/191 (28%), Positives = 92/191 (49%), Gaps = 11/191 (5%)
Query 65 GAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILHPGDVDGDIPLLLEMPMVYTG 123
G V+FH D ++++ G ++L + R +V IL PG++ G++ L P T
Sbjct 30 GDVLFHEGDRGDTLYVIAEGKVKLGRTSADGRENLVAILGPGEMFGELSLFDPGPRTMTA 89
Query 124 RALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVSTAQIRLMGMLGRPLPAQVAQL 183
A+ + L L + LL P +A+ L+++AQR+ L ++ +P +VA+
Sbjct 90 TAVAETQLLGLGNDSLTGLLTGRPEVAKSLLAALAQRLRRTNAHLADLVFTDVPGRVAKA 149
Query 184 LLD--EAIDARIE--------LAQRTLAAMLGAQRPSINKILKEFERDRLITVGYAVIEI 233
L+D E +E L Q LA ++GA R ++NK L +F+ + + + +
Sbjct 150 LIDLSERFGRHVEGGLLVAHDLTQEELAQLVGASRETVNKALADFQSRGWLRLEARAVLL 209
Query 234 TDQHGLRARAQ 244
D LR RA+
Sbjct 210 QDVERLRRRAK 220
>gi|220913917|ref|YP_002489226.1| Crp/Fnr family transcriptional regulator [Arthrobacter chlorophenolicus
A6]
gi|219860795|gb|ACL41137.1| transcriptional regulator, Crp/Fnr family [Arthrobacter chlorophenolicus
A6]
Length=225
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/213 (28%), Positives = 101/213 (48%), Gaps = 11/213 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRAVVNI 101
A L D L + L + + GA VF D ++ + G ++L S R +++ I
Sbjct 13 ATLDDDAFRLLTDELTEVDLSRGASVFREGDQGDQLYFIVSGKVKLGRTSPDGRESLLAI 72
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG++ G++ L P T A+++ L ++ LL T P ++ + L ++A+R+
Sbjct 73 LGPGELFGEMALFDPSPRTATATAVSETRLAGLKNESLNNLLRTRPEVSAQLLQALARRL 132
Query 162 STAQIRLMGMLGRPLPAQVAQLLLD-------EAIDARI---ELAQRTLAAMLGAQRPSI 211
L ++ +P +VA+ LLD A D + EL Q LA ++GA R ++
Sbjct 133 RRTNDSLSDLVFSDVPGRVAKALLDLADRFGRPATDGVLVAHELTQEELAQLVGASRETV 192
Query 212 NKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
NK L EF + + + + I D LR R++
Sbjct 193 NKALAEFVQRGWLRLEARAVVILDMQRLRQRSR 225
>gi|218781402|ref|YP_002432720.1| Crp/Fnr family transcriptional regulator [Desulfatibacillum alkenivorans
AK-01]
gi|218762786|gb|ACL05252.1| transcriptional regulator, Crp/Fnr family [Desulfatibacillum
alkenivorans AK-01]
Length=227
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/203 (23%), Positives = 101/203 (50%), Gaps = 7/203 (3%)
Query 45 LHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVNILH 103
L + D+ +LA ++E+ GA++F + DG ++V G +++ + S+ + ++ IL
Sbjct 17 LSKPDLDSLARIASMREYRKGAIIFFEGEYCDGFYVVAKGRVKITKISSKGKEQILYILE 76
Query 104 PGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRVST 163
G+ G + + T +AL + CLF + F L++ PA+ L+ +A+R
Sbjct 77 TGEPFGQLAIYHGDAFPATAQALETSVCLFFPKTPFLELISQRPALPMNMLAFLARRHRE 136
Query 164 AQIRLMGMLGRPLPAQVAQLLLDEAIDAR------IELAQRTLAAMLGAQRPSINKILKE 217
+++ + + +P ++A+ LL + + + +++ LA +LGA ++++ L +
Sbjct 137 LTLQIENIALKEVPERLAEYLLYLCWEQKSLKTVSLPISKEQLAYLLGATPETLSRSLAK 196
Query 218 FERDRLITVGYAVIEITDQHGLR 240
D +I + I I D+ L
Sbjct 197 LVDDGMIMMDGKDISIIDEESLN 219
>gi|158522113|ref|YP_001529983.1| Crp/FNR family transcriptional regulator [Desulfococcus oleovorans
Hxd3]
gi|158510939|gb|ABW67906.1| transcriptional regulator, Crp/Fnr family [Desulfococcus oleovorans
Hxd3]
Length=226
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/205 (27%), Positives = 99/205 (49%), Gaps = 7/205 (3%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIE-LAVGSRRRRAVVNI 101
A L D + +A Q K F G ++F Q ADG ++V G I+ V + +++I
Sbjct 14 AGLPADQLEKVARIAQSKPFEKGEMIFSDGQKADGFYVVAQGRIKVFKVSLDGKEQILHI 73
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
PG+ G++P+ AL ++ LF + F RLL + + L+ +++R+
Sbjct 74 FGPGEPVGEVPVFAGSAFPAGAAALEKSLLLFFPKTVFVRLLEENTPLVLNMLAVLSRRL 133
Query 162 STAQIRLMGMLGRPLPAQVAQLLL---DEAIDAR---IELAQRTLAAMLGAQRPSINKIL 215
+++ + + +P ++A LL E D R + +++ LA++LG ++++IL
Sbjct 134 RQFTVQVENLSLKEVPGRLAGYLLFLAKEQKDTRRVELSISKGQLASLLGTIPETLSRIL 193
Query 216 KEFERDRLITVGYAVIEITDQHGLR 240
+ LI V AVI + D GL
Sbjct 194 AKMRDTGLIEVEGAVISLLDIEGLE 218
>gi|296163331|ref|ZP_06846091.1| transcriptional regulator, Crp/Fnr family [Burkholderia sp. Ch1-1]
gi|295886423|gb|EFG66281.1| transcriptional regulator, Crp/Fnr family [Burkholderia sp. Ch1-1]
Length=266
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (30%), Positives = 99/214 (47%), Gaps = 21/214 (9%)
Query 42 SAPLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRRRAVVN 100
S P H + AL + Q++ + G ++F D+ D + +V G IE++ S RAV
Sbjct 53 SWPAH--AIDALCDAGQLRTWTNGELIFARDEPCDDIQVVLSGAIEMSWTNSAGVRAVAV 110
Query 101 ILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQR 160
+ P +V IP+L ++ RA T + +A L A PA+ R L + R
Sbjct 111 YMRPNEVINFIPVLDRRGSMHDQRAHGSTTLFHIPGKALFDLFAREPALLRNVLDLICLR 170
Query 161 VSTAQIRLMGMLGRP----LPAQVAQLLL----------DEAIDARIELAQRTLAAMLGA 206
L G LGR A++A+ LL + ++ I L+Q LAA+L A
Sbjct 171 SRA----LHGRLGRTALAGFRARMAEQLLALAEWHGRPTGQGVELTIRLSQEDLAALLAA 226
Query 207 QRPSINKILKEFERDRLITVGYAVIEITDQHGLR 240
R SINK L+ R+ ++ V Y+ + + D LR
Sbjct 227 SRQSINKELRWLVRNGIVDVRYSRLTVIDMKALR 260
>gi|325964648|ref|YP_004242554.1| cAMP-binding protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323470735|gb|ADX74420.1| cAMP-binding protein [Arthrobacter phenanthrenivorans Sphe3]
Length=225
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/213 (28%), Positives = 101/213 (48%), Gaps = 11/213 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRAVVNI 101
A L D L + L + + GA VF D ++ + G ++L S R +++ I
Sbjct 13 ATLDDDAFRLLTDELTEVDLSRGASVFREGDQGDQLYFIVSGKVKLGRTSPDGRESLLAI 72
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG++ G++ L P T A+++ L ++ LL T P ++ + L ++A+R+
Sbjct 73 LGPGELFGEMALFDPSPRTATATAVSETRLAGLKNESLNTLLRTRPEVSAQLLQALARRL 132
Query 162 STAQIRLMGMLGRPLPAQVAQLLLD-------EAIDARI---ELAQRTLAAMLGAQRPSI 211
L ++ +P +VA+ LLD A D + EL Q LA ++GA R ++
Sbjct 133 RRTNDSLSDLVFSDVPGRVAKALLDLADRFGRPATDGVLVAHELTQEELAQLVGASRETV 192
Query 212 NKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
NK L EF + + + + I D LR R++
Sbjct 193 NKALAEFVQRGWLRLEARAVVILDMQRLRQRSR 225
>gi|336321932|ref|YP_004601900.1| Crp/Fnr family transcriptional regulator [Cellvibrio gilvus ATCC
13127]
gi|336105513|gb|AEI13332.1| transcriptional regulator, Crp/Fnr family [Cellvibrio gilvus
ATCC 13127]
Length=225
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/192 (30%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query 42 SAPLHR--DDVSALA--ETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRR-RR 96
SAPL D+ S+LA ++ E G V+FH ++ D ++IVR G I+L S R
Sbjct 8 SAPLFAGLDEESSLALVASMTPLEVVRGDVLFHEGESGDRLYIVREGKIKLGRRSNDGRE 67
Query 97 AVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSS 156
++ +L PG++ G++ + P T + A L L L+ P +++ L +
Sbjct 68 NLLAVLGPGEMFGELSMFDPGPRTATATVVADAVLLELGHDELFAWLSDKPGVSQHLLQA 127
Query 157 VAQRVSTAQIRLMGMLGRPLPAQVAQLLLD------EAIDARI----ELAQRTLAAMLGA 206
+A+R+ L ++ +P +VA+ LLD E +D + +L Q LA ++GA
Sbjct 128 LARRLRRTNEALADLVFSDVPGRVAKALLDLSTRFGEQVDEGVRVAHDLTQEELAQLVGA 187
Query 207 QRPSINKILKEF 218
R ++NK L +F
Sbjct 188 SRETVNKALADF 199
>gi|119963283|ref|YP_949061.1| cyclic nucleotide-binding domain-containing protein [Arthrobacter
aurescens TC1]
gi|119950142|gb|ABM09053.1| putative cyclic nucleotide-binding domain [Arthrobacter aurescens
TC1]
Length=225
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/213 (28%), Positives = 101/213 (48%), Gaps = 11/213 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGS-RRRRAVVNI 101
A L D L + L + + GA VF D ++ + G ++L S R +++ I
Sbjct 13 ATLDDDAFRLLTDELTEVDLSRGASVFREGDQGDQLYFIVSGKVKLGRTSPDGRESLLAI 72
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG++ G++ L P T A+++ L ++ LL T P ++ + L ++A+R+
Sbjct 73 LGPGELFGEMALFDPSPRTATATAVSETRLAGLKNESLNALLRTRPEVSAQLLQALARRL 132
Query 162 STAQIRLMGMLGRPLPAQVAQLLLD-------EAIDARI---ELAQRTLAAMLGAQRPSI 211
L ++ +P +VA+ LLD A D + EL Q LA ++GA R ++
Sbjct 133 RRTNDSLSDLVFSDVPGRVAKALLDLADRFGRPATDGVLVAHELTQEELAQLVGASRETV 192
Query 212 NKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
NK L EF + + + + I D LR R++
Sbjct 193 NKALAEFVQRGWLRLEARAVVILDMQRLRQRSR 225
>gi|271962041|ref|YP_003336237.1| Crp/Fnr family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270505216|gb|ACZ83494.1| putative transcriptional regulator, Crp/Fnr family [Streptosporangium
roseum DSM 43021]
Length=226
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/219 (27%), Positives = 102/219 (47%), Gaps = 15/219 (6%)
Query 41 GSAPLH----RDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELA-VGSRRR 95
G APL R+ +AL ++ E + G +F ++T D +++V G I+L+ R
Sbjct 8 GKAPLFSALDREGAAALRTSVSEVELSKGQTLFSENETGDRLYVVLEGKIKLSRTAPDGR 67
Query 96 RAVVNILHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLS 155
++++L PG++ G++ L P + ALT L L P +A L
Sbjct 68 ENLLSVLGPGEMFGELSLFDPRPRTASATALTDVRLAGLGHDDLRPWLTGRPEVALHLLR 127
Query 156 SVAQRVSTAQIRLMGMLGRPLPAQVAQLLLD--EAIDARI--------ELAQRTLAAMLG 205
++AQR+ L ++ +P +VA+ LLD E RI +L Q LA ++G
Sbjct 128 ALAQRLRRTNDVLADLVFTDVPGRVAKALLDLAERFGQRIDDGVRVHHDLTQEELAQLVG 187
Query 206 AQRPSINKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
A R ++NK L +F + + + + I D L R++
Sbjct 188 ASRETVNKALADFAQRGWLRIEAKAVVIMDLERLHNRSR 226
>gi|118592222|ref|ZP_01549615.1| cAMP-binding protein - catabolite gene activator and regulatory
subunit of cAMP-dependent protein kinase [Stappia aggregata
IAM 12614]
gi|118435194|gb|EAV41842.1| cAMP-binding protein - catabolite gene activator and regulatory
subunit of cAMP-dependent protein kinase [Stappia aggregata
IAM 12614]
Length=234
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/199 (29%), Positives = 91/199 (46%), Gaps = 15/199 (7%)
Query 59 VKEFAPGAVVFHADQTADGVWIVRHGLIELAVG-SRRRRAVVNILHPGDVDGDIPLLLEM 117
+ + + +F A DG+ ++ G I + + + R + +L PGD G+I +L ++
Sbjct 29 IARYEAESAIFAAGDEPDGLRVIITGSIRIWISDAEGRELTLALLEPGDPFGEISVLDKL 88
Query 118 PMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQ--RVSTAQIRLMGMLGRP 175
P AL + CLFL + A E L P A + + + R +T + LG
Sbjct 89 PRTANASALANSECLFLPKDAMEIALDKSPQFAHHLIQLLCEILRRNTEAMGAFAFLG-- 146
Query 176 LPAQVAQLLLDEAIDA----------RIELAQRTLAAMLGAQRPSINKILKEFERDRLIT 225
L ++AQ LLD A+ + + +Q LA MLG R ++NK L D LIT
Sbjct 147 LDGRLAQKLLDLALSYADLKDDGAKFKRKFSQNELAHMLGVTREALNKRLNALAHDGLIT 206
Query 226 VGYAVIEITDQHGLRARAQ 244
+ +I I + L RA+
Sbjct 207 LTNGLISIPNLEALATRAR 225
>gi|257069733|ref|YP_003155988.1| cAMP-binding protein [Brachybacterium faecium DSM 4810]
gi|256560551|gb|ACU86398.1| cAMP-binding protein [Brachybacterium faecium DSM 4810]
Length=225
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/213 (26%), Positives = 101/213 (48%), Gaps = 11/213 (5%)
Query 43 APLHRDDVSALAETLQVKEFAPGAVVFHADQTADGVWIVRHGLIELAVGSRR-RRAVVNI 101
A L D A+ +++ +++ A++F D ++I+ G +++ S R ++ +
Sbjct 13 AALDEDGKQAVLASMKQEDYHRSAIIFREGDPGDRLFIIGSGKVKVGHASGDGRENLLAV 72
Query 102 LHPGDVDGDIPLLLEMPMVYTGRALTQATCLFLDRQAFERLLATHPAIARRWLSSVAQRV 161
L PG+ G++ L P T + ++T L +Q R+LA P + R L+S+A+R+
Sbjct 73 LGPGETLGELSLFDPAPRNATATVVAESTLYSLSQQDLYRVLAQRPEVGRHLLASLARRL 132
Query 162 STAQIRLMGMLGRPLPAQVAQLLLD----------EAIDARIELAQRTLAAMLGAQRPSI 211
L ++ +P +VA+ +LD + + L Q LA ++GA R ++
Sbjct 133 RKTNESLADLVFADVPGRVAKNVLDLAQRFGRQTDDGVMVAHGLTQEELAQLVGASRETV 192
Query 212 NKILKEFERDRLITVGYAVIEITDQHGLRARAQ 244
NK L +F I + + I D LR RA+
Sbjct 193 NKALADFASRGWIRLEARAVLIVDVERLRRRAR 225
Lambda K H
0.324 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 340053351120
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40