BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1678

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841135|ref|NP_336172.1|  hypothetical protein MT1718 [Mycoba...   577    1e-162
gi|15608816|ref|NP_216194.1|  integral membrane protein [Mycobact...   576    1e-162
gi|340626683|ref|YP_004745135.1|  putative integral membrane prot...   570    6e-161
gi|167969204|ref|ZP_02551481.1|  hypothetical protein MtubH3_1472...   569    2e-160
gi|240171255|ref|ZP_04749914.1|  hypothetical protein MkanA1_1822...   371    6e-101
gi|120406828|ref|YP_956657.1|  hypothetical protein Mvan_5886 [My...   273    3e-71 
gi|88856679|ref|ZP_01131335.1|  hypothetical protein A20C1_10870 ...   131    1e-28 
gi|258591394|emb|CBE67693.1|  conserved membrane protein of unkno...  91.3    2e-16 
gi|220922689|ref|YP_002497991.1|  hypothetical protein Mnod_2732 ...  71.2    2e-10 
gi|170744168|ref|YP_001772823.1|  hypothetical protein M446_6113 ...  52.4    9e-05 
gi|220923407|ref|YP_002498709.1|  hypothetical protein Mnod_3495 ...  49.3    7e-04 
gi|269957139|ref|YP_003326928.1|  hypothetical protein Xcel_2354 ...  35.8    8.8   


>gi|15841135|ref|NP_336172.1| hypothetical protein MT1718 [Mycobacterium tuberculosis CDC1551]
 gi|253799283|ref|YP_003032284.1| hypothetical protein TBMG_02316 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231873|ref|ZP_04925200.1| hypothetical protein TBCG_01631 [Mycobacterium tuberculosis C]
 19 more sequence titles
 gi|254364519|ref|ZP_04980565.1| hypothetical integral membrane protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|306779681|ref|ZP_07418018.1| membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306967776|ref|ZP_07480437.1| membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|306971972|ref|ZP_07484633.1| membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308372029|ref|ZP_07667287.1| membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308401196|ref|ZP_07493374.2| membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313658549|ref|ZP_07815429.1| hypothetical protein MtubKV_09027 [Mycobacterium tuberculosis 
KZN V2475]
 gi|13881353|gb|AAK45986.1| hypothetical protein MT1718 [Mycobacterium tuberculosis CDC1551]
 gi|124600932|gb|EAY59942.1| hypothetical protein TBCG_01631 [Mycobacterium tuberculosis C]
 gi|134150033|gb|EBA42078.1| hypothetical integral membrane protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|253320786|gb|ACT25389.1| membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|308327333|gb|EFP16184.1| membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308334598|gb|EFP23449.1| membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308354518|gb|EFP43369.1| membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308358493|gb|EFP47344.1| membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308366117|gb|EFP54968.1| membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323719768|gb|EGB28882.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|339294634|gb|AEJ46745.1| hypothetical protein CCDC5079_1555 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298267|gb|AEJ50377.1| hypothetical protein CCDC5180_1540 [Mycobacterium tuberculosis 
CCDC5180]
Length=302

 Score =  577 bits (1486),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%), Gaps = 0/300 (0%)

Query  1    MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF  60
            MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF
Sbjct  3    MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF  62

Query  61   THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS  120
            THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS
Sbjct  63   THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS  122

Query  121  VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA  180
            VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA
Sbjct  123  VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA  182

Query  181  GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG  240
            GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG
Sbjct  183  GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG  242

Query  241  WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  300
            WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA
Sbjct  243  WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  302


>gi|15608816|ref|NP_216194.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|31792864|ref|NP_855357.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 gi|121637585|ref|YP_977808.1| hypothetical protein BCG_1716 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 37 more sequence titles
 gi|148661475|ref|YP_001282998.1| hypothetical protein MRA_1689 [Mycobacterium tuberculosis H37Ra]
 gi|148822886|ref|YP_001287640.1| hypothetical protein TBFG_11695 [Mycobacterium tuberculosis F11]
 gi|224990060|ref|YP_002644747.1| hypothetical integral membrane protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|289443135|ref|ZP_06432879.1| membrane protein [Mycobacterium tuberculosis T46]
 gi|289447290|ref|ZP_06437034.1| membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554548|ref|ZP_06443758.1| membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289569725|ref|ZP_06449952.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289574346|ref|ZP_06454573.1| membrane protein [Mycobacterium tuberculosis K85]
 gi|289745885|ref|ZP_06505263.1| integral membrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289750234|ref|ZP_06509612.1| membrane protein [Mycobacterium tuberculosis T92]
 gi|289753769|ref|ZP_06513147.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289757789|ref|ZP_06517167.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761833|ref|ZP_06521211.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298525177|ref|ZP_07012586.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339631732|ref|YP_004723374.1| hypothetical protein MAF_16950 [Mycobacterium africanum GM041182]
 gi|2916976|emb|CAA17608.1| PROBABLE INTEGRAL MEMBRANE PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|31618454|emb|CAD96372.1| HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493232|emb|CAL71703.1| Hypothetical integral membrane protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|148505627|gb|ABQ73436.1| hypothetical protein MRA_1689 [Mycobacterium tuberculosis H37Ra]
 gi|148721413|gb|ABR06038.1| hypothetical integral membrane protein [Mycobacterium tuberculosis 
F11]
 gi|224773173|dbj|BAH25979.1| hypothetical integral membrane protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|289416054|gb|EFD13294.1| membrane protein [Mycobacterium tuberculosis T46]
 gi|289420248|gb|EFD17449.1| membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439180|gb|EFD21673.1| membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289538777|gb|EFD43355.1| membrane protein [Mycobacterium tuberculosis K85]
 gi|289543479|gb|EFD47127.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289686413|gb|EFD53901.1| integral membrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289690821|gb|EFD58250.1| membrane protein [Mycobacterium tuberculosis T92]
 gi|289694356|gb|EFD61785.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289709339|gb|EFD73355.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289713353|gb|EFD77365.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494971|gb|EFI30265.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326903292|gb|EGE50225.1| membrane protein [Mycobacterium tuberculosis W-148]
 gi|328459034|gb|AEB04457.1| membrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|339331088|emb|CCC26766.1| putative integral membrane protein [Mycobacterium africanum GM041182]
 gi|341601603|emb|CCC64276.1| hypothetical integral membrane protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
 gi|344219499|gb|AEN00130.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
Length=300

 Score =  576 bits (1485),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%), Gaps = 0/300 (0%)

Query  1    MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF  60
            MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF
Sbjct  1    MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF  60

Query  61   THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS  120
            THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS
Sbjct  61   THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS  120

Query  121  VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA  180
            VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA
Sbjct  121  VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA  180

Query  181  GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG  240
            GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG
Sbjct  181  GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG  240

Query  241  WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  300
            WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA
Sbjct  241  WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  300


>gi|340626683|ref|YP_004745135.1| putative integral membrane protein [Mycobacterium canettii CIPT 
140010059]
 gi|340004873|emb|CCC44019.1| putative integral membrane protein [Mycobacterium canettii CIPT 
140010059]
Length=300

 Score =  570 bits (1470),  Expect = 6e-161, Method: Compositional matrix adjust.
 Identities = 298/300 (99%), Positives = 298/300 (99%), Gaps = 0/300 (0%)

Query  1    MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF  60
            MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF
Sbjct  1    MARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHF  60

Query  61   THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS  120
            THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS
Sbjct  61   THLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQS  120

Query  121  VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA  180
            VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA
Sbjct  121  VAIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLA  180

Query  181  GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRG  240
            GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGAL LIAIALAMLAAAKRG
Sbjct  181  GWGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALVLIAIALAMLAAAKRG  240

Query  241  WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  300
            WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLAT FRIGRVEGA
Sbjct  241  WRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATGFRIGRVEGA  300


>gi|167969204|ref|ZP_02551481.1| hypothetical protein MtubH3_14720 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550687|ref|ZP_05141134.1| hypothetical protein Mtube_09559 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294996628|ref|ZP_06802319.1| hypothetical protein Mtub2_19518 [Mycobacterium tuberculosis 
210]
 12 more sequence titles
 gi|297634230|ref|ZP_06952010.1| hypothetical protein MtubK4_08922 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731217|ref|ZP_06960335.1| hypothetical protein MtubKR_09012 [Mycobacterium tuberculosis 
KZN R506]
 gi|306793116|ref|ZP_07431418.1| membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306797496|ref|ZP_07435798.1| membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308370791|ref|ZP_07667018.1| membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308375646|ref|ZP_07668076.1| membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308376793|ref|ZP_07668354.1| membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308330775|gb|EFP19626.1| membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308338385|gb|EFP27236.1| membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308342108|gb|EFP30959.1| membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308345579|gb|EFP34430.1| membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308349897|gb|EFP38748.1| membrane protein [Mycobacterium tuberculosis SUMu008]
Length=297

 Score =  569 bits (1467),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 296/297 (99%), Positives = 297/297 (100%), Gaps = 0/297 (0%)

Query  4    VRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHL  63
            +RRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHL
Sbjct  1    MRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHL  60

Query  64   AVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVAI  123
            AVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVAI
Sbjct  61   AVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVAI  120

Query  124  GLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLAGWG  183
            GLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLAGWG
Sbjct  121  GLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLAGWG  180

Query  184  IVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRGWRT  243
            IVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRGWRT
Sbjct  181  IVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRGWRT  240

Query  244  VALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  300
            VALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA
Sbjct  241  VALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  297


>gi|240171255|ref|ZP_04749914.1| hypothetical protein MkanA1_18221 [Mycobacterium kansasii ATCC 
12478]
Length=302

 Score =  371 bits (953),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 236/299 (79%), Positives = 253/299 (85%), Gaps = 0/299 (0%)

Query  2    ARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFT  61
            A VRRGTELL SP +PP TGGLI L GLRLLAGLIWLYNVVWK+PPDFG+R    LYHFT
Sbjct  4    AGVRRGTELLFSPGAPPETGGLIALAGLRLLAGLIWLYNVVWKLPPDFGQRSNSGLYHFT  63

Query  62   HLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSV  121
            HLA+EHPVF PFSW +EH VLPYFTAFGW VL AESALAVLLLTGTAVRLAALIGIGQS+
Sbjct  64   HLAIEHPVFKPFSWAVEHLVLPYFTAFGWAVLVAESALAVLLLTGTAVRLAALIGIGQSL  123

Query  122  AIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLAG  181
            AIGLSVAESPGEWPWAYAMLLGIHVVLLF  STRYAAVDAVR A + SA R+ AQRLLAG
Sbjct  124  AIGLSVAESPGEWPWAYAMLLGIHVVLLFVASTRYAAVDAVRVATSPSAVRSRAQRLLAG  183

Query  182  WGIVLGLIGLVAVWRGLGDDRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAAKRGW  241
            W  VL LI L+A WRGL    PAYVGIR LEFSLG+YNLRGA+ LIA+ALAMLAAAK G 
Sbjct  184  WATVLLLIALIAGWRGLAGSWPAYVGIRPLEFSLGQYNLRGAVVLIAVALAMLAAAKAGQ  243

Query  242  RTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSLATEFRIGRVEGA  300
            R +A+ AA VA  AAA+IY+QVG TAVWLGGTNTTA VFVCAAVVSLAT   IGR +GA
Sbjct  244  RMIAIAAAAVAALAAASIYVQVGGTAVWLGGTNTTAVVFVCAAVVSLATGSMIGRTKGA  302


>gi|120406828|ref|YP_956657.1| hypothetical protein Mvan_5886 [Mycobacterium vanbaalenii PYR-1]
 gi|119959646|gb|ABM16651.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=302

 Score =  273 bits (697),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 167/291 (58%), Positives = 210/291 (73%), Gaps = 5/291 (1%)

Query  2    ARVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFT  61
            A  RR  +L+LSP   PA  G I LT LR++AGL WL +V WKVPPDFGE  R  L+ +T
Sbjct  4    ASPRRAIDLVLSPAPAPARAGGISLTVLRIVAGL-WLAHVWWKVPPDFGEARRTGLWFWT  62

Query  62   HLAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSV  121
            HLAV+HPVF P+SW++EH VLP FT FGW VL  E+ L VLLLTGTAVRLAALIGIGQS+
Sbjct  63   HLAVDHPVFPPYSWLVEHVVLPNFTPFGWLVLVVETLLPVLLLTGTAVRLAALIGIGQSL  122

Query  122  AIGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRLLAG  181
            AIG+SVA++P EWPWAYAM+LGIH+VLL   S +YAAVDA+RAA         A+RLL G
Sbjct  123  AIGMSVAQAPNEWPWAYAMMLGIHLVLLLAPSAQYAAVDAIRAARRDGEPAPIARRLLGG  182

Query  182  WGIVLGLIGLVAVWRGLGD----DRPAYVGIRALEFSLGEYNLRGALALIAIALAMLAAA  237
            WG++L L+ +VA  + LGD     R + VG   L+  LG+YN+  AL L+ +A  MLAAA
Sbjct  183  WGLLLALVAIVAAVKSLGDPFVAPRGSGVGYPPLQLFLGDYNMLAALVLLIVAGLMLAAA  242

Query  238  KRGWRTVALVAAVVAVAAAAAIYLQVGRTAVWLGGTNTTAAVFVCAAVVSL  288
                R +A+ +A +A  AA +IY+Q+GR  VWLGG  +TAAVFVCAAV+++
Sbjct  243  AVRIRALAVTSAAIAALAALSIYVQLGRGEVWLGGNPSTAAVFVCAAVIAV  293


>gi|88856679|ref|ZP_01131335.1| hypothetical protein A20C1_10870 [marine actinobacterium PHSC20C1]
 gi|88814140|gb|EAR24006.1| hypothetical protein A20C1_10870 [marine actinobacterium PHSC20C1]
Length=182

 Score =  131 bits (330),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 69/160 (44%), Positives = 94/160 (59%), Gaps = 9/160 (5%)

Query  3    RVRRGTELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTH  62
            R   GTE       P  +G  + L  LR+   ++W+ N  WKVPPDFG    + L+ +  
Sbjct  12   RAHYGTE-------PRFSGAALAL--LRIGVAVLWMQNAAWKVPPDFGRDADKGLFFWAT  62

Query  63   LAVEHPVFTPFSWVIEHAVLPYFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVA  122
             AV++PVF P+SW +E   LP    FGWGVL AE+AL   LL G A RL ALIG+ Q++A
Sbjct  63   HAVDNPVFAPYSWFVETVFLPNIEIFGWGVLLAETALGAFLLIGLATRLWALIGMAQTIA  122

Query  123  IGLSVAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDAV  162
            I LS   +P EW W+Y ++L  HVVL  T + R+  +D +
Sbjct  123  ITLSALNTPNEWHWSYYLMLLAHVVLFATAAGRHFGIDGL  162


>gi|258591394|emb|CBE67693.1| conserved membrane protein of unknown function [NC10 bacterium 
'Dutch sediment']
Length=178

 Score = 91.3 bits (225),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 52/155 (34%), Positives = 82/155 (53%), Gaps = 10/155 (6%)

Query  29   LRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHLAVEHPVFTPFSWVIEHA-----VLP  83
            LR++ G++WL    WKVPPDFG +    L+++ + A+++P     +W + HA     VLP
Sbjct  25   LRMMYGILWLQQAKWKVPPDFGMKAGDGLWYWLNQAIQYP-----TWSVHHAFLMNVVLP  79

Query  84   YFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVAIGLSVAESPGEWPWAYAMLLG  143
             F  FG+  L  E+ + + L  G   RL  L+G+  ++ + LSV   P EW W Y ML+G
Sbjct  80   NFILFGYLTLLTEAFIGLSLTFGLFARLGGLVGLLMAINVTLSVLRVPHEWHWTYFMLIG  139

Query  144  IHVVLLFTCSTRYAAVDAVRAAATGSAARTAAQRL  178
              V+ L   S R   +D++ +    +     AQ L
Sbjct  140  YSVLFLSFPSGRILGLDSLLSRWLANKRGRTAQLL  174


>gi|220922689|ref|YP_002497991.1| hypothetical protein Mnod_2732 [Methylobacterium nodulans ORS 
2060]
 gi|219947296|gb|ACL57688.1| conserved hypothetical protein [Methylobacterium nodulans ORS 
2060]
Length=218

 Score = 71.2 bits (173),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 49/153 (33%), Positives = 74/153 (49%), Gaps = 4/153 (2%)

Query  30   RLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHLAVEHPVFTPFSWVIEHAVLPYFTAFG  89
            R+L G +W    +WK+P    + G   L+++T   V+H  F     ++ HAV+P F   G
Sbjct  67   RVLVGSMWFQGSLWKLPLFTTDNG---LFYWTQQMVQHSAFDWHRDLVAHAVIPAFLVIG  123

Query  90   WGVLFAESALAVLLLTGTAVRLAALIGIGQSVAIGLSVAESPGEWPWAYAMLLGIHVVLL  149
              V   E A A  L+ G AVRL  LIG+   + + + +   PGEWPW Y  L  +     
Sbjct  124  PLVYLTELAFAASLILGFAVRLTGLIGVAFVINLWIGLYRHPGEWPWNYVFLALLMGAFS  183

Query  150  FTCSTRYAAVDA-VRAAATGSAARTAAQRLLAG  181
               + R   +DA +R        RT  +++LAG
Sbjct  184  LHAAGRSLGLDALLRRRMLQWTRRTPWEQVLAG  216


>gi|170744168|ref|YP_001772823.1| hypothetical protein M446_6113 [Methylobacterium sp. 4-46]
 gi|168198442|gb|ACA20389.1| hypothetical protein M446_6113 [Methylobacterium sp. 4-46]
Length=220

 Score = 52.4 bits (124),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 45/155 (30%), Positives = 67/155 (44%), Gaps = 7/155 (4%)

Query  9    ELLLSPQSPPATGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHLAVEHP  68
            E +L P     TG  +V   LR   G +W     WK+P    E G   L+++T   V++ 
Sbjct  48   EWILDPAQ--RTGRDLVTWLLRTAIGAMWFQAAFWKLPLLTTENG---LHYWTEQEVKYA  102

Query  69   VFTPFSWVIEHAVLP--YFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVAIGLS  126
             F     ++   +LP   F      VL  E   AV L+ G  VR A  +G+     + L 
Sbjct  103  AFQAHRDLVAQLLLPVPNFYVLNAAVLATELGFAVSLMLGIGVRAAGALGVVFLAQLWLG  162

Query  127  VAESPGEWPWAYAMLLGIHVVLLFTCSTRYAAVDA  161
            + + P EWPW Y  L G+  +     + R   +DA
Sbjct  163  LYQHPQEWPWTYVFLAGLMGLFSVAGAGRSLGLDA  197


>gi|220923407|ref|YP_002498709.1| hypothetical protein Mnod_3495 [Methylobacterium nodulans ORS 
2060]
 gi|219948014|gb|ACL58406.1| conserved hypothetical protein [Methylobacterium nodulans ORS 
2060]
Length=220

 Score = 49.3 bits (116),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 40/144 (28%), Positives = 65/144 (46%), Gaps = 5/144 (3%)

Query  20   TGGLIVLTGLRLLAGLIWLYNVVWKVPPDFGERGRRDLYHFTHLAVEHPVFTPFSWVIEH  79
            TG  +V+  +R   G +W   + WK+P      G   L+++T   V++  F     ++  
Sbjct  57   TGRDLVMWLVRTAVGGMWFQAIFWKLPLFTTNNG---LHYWTSQEVKYAAFQIHRDLVAQ  113

Query  80   AVLP--YFTAFGWGVLFAESALAVLLLTGTAVRLAALIGIGQSVAIGLSVAESPGEWPWA  137
             +LP   F      V   E A A+ L+ G  VR+A  IG+     + L + + P EWPW 
Sbjct  114  VLLPTPQFYVLNVVVFATELAFAISLMLGIGVRVAGAIGVLFLAQLWLGLYQHPQEWPWT  173

Query  138  YAMLLGIHVVLLFTCSTRYAAVDA  161
            Y  L G+  +     + R   +DA
Sbjct  174  YIFLGGLMGLFSVCGAGRSLGLDA  197


>gi|269957139|ref|YP_003326928.1| hypothetical protein Xcel_2354 [Xylanimonas cellulosilytica DSM 
15894]
 gi|269305820|gb|ACZ31370.1| hypothetical protein Xcel_2354 [Xylanimonas cellulosilytica DSM 
15894]
Length=317

 Score = 35.8 bits (81),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query  122  AIGLSVAESPGEWPWAYAMLLGIHVV-----LLFTCSTRYAAVDAVRAAATGSAARTAAQ  176
            A+G S    PG WP+   ML G+ +V     L  T  TR   +  V AA   +  RT++ 
Sbjct  171  AVGGSSGPYPG-WPYGLPMLFGLAIVAVTTWLALTAITRRRPLAGVPAAHDDAVRRTSSD  229

Query  177  RLLAGWGIVLGL  188
            RLLA   + LGL
Sbjct  230  RLLAAVQLCLGL  241



Lambda     K      H
   0.326    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 505145727648


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40