BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1685c
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608823|ref|NP_216201.1| hypothetical protein Rv1685c [Mycob... 412 2e-113
gi|289443142|ref|ZP_06432886.1| conserved hypothetical protein [... 407 4e-112
gi|289761840|ref|ZP_06521218.1| transcriptional regulator [Mycob... 351 4e-95
gi|240170132|ref|ZP_04748791.1| hypothetical protein MkanA1_1251... 331 3e-89
gi|339294640|gb|AEJ46751.1| hypothetical protein CCDC5079_1561 [... 325 3e-87
gi|183982498|ref|YP_001850789.1| hypothetical protein MMAR_2484 ... 313 1e-83
gi|296164582|ref|ZP_06847150.1| TetR family transcriptional regu... 311 4e-83
gi|254819731|ref|ZP_05224732.1| transcriptional regulator, TetR ... 310 7e-83
gi|342860738|ref|ZP_08717388.1| hypothetical protein MCOL_17743 ... 309 1e-82
gi|118468038|ref|YP_888058.1| transcriptional regulator [Mycobac... 307 8e-82
gi|183982496|ref|YP_001850787.1| hypothetical protein MMAR_2482 ... 305 3e-81
gi|120404273|ref|YP_954102.1| TetR family transcriptional regula... 304 7e-81
gi|108799925|ref|YP_640122.1| TetR family transcriptional regula... 303 8e-81
gi|126435553|ref|YP_001071244.1| TetR family transcriptional reg... 303 9e-81
gi|118463269|ref|YP_882271.1| TetR family transcriptional regula... 296 1e-78
gi|41407489|ref|NP_960325.1| hypothetical protein MAP1391c [Myco... 294 6e-78
gi|118617296|ref|YP_905628.1| hypothetical protein MUL_1664 [Myc... 291 3e-77
gi|333990483|ref|YP_004523097.1| hypothetical protein JDM601_184... 278 4e-73
gi|183983529|ref|YP_001851820.1| hypothetical protein MMAR_3548 ... 271 5e-71
gi|118618218|ref|YP_906550.1| hypothetical protein MUL_2781 [Myc... 268 5e-70
gi|169629437|ref|YP_001703086.1| TetR family transcriptional reg... 234 7e-60
gi|226360091|ref|YP_002777869.1| TetR family transcriptional reg... 221 6e-56
gi|111017960|ref|YP_700932.1| TetR family transcriptional regula... 212 3e-53
gi|229492773|ref|ZP_04386574.1| transcriptional regulator, TetR ... 200 8e-50
gi|226306761|ref|YP_002766721.1| TetR family transcriptional reg... 200 9e-50
gi|312139865|ref|YP_004007201.1| tetr family transcriptional reg... 188 5e-46
gi|325674258|ref|ZP_08153947.1| TetR family transcriptional regu... 187 1e-45
gi|54023955|ref|YP_118197.1| putative transcriptional regulator ... 180 1e-43
gi|145595694|ref|YP_001159991.1| regulatory protein TetR [Salini... 160 1e-37
gi|333921261|ref|YP_004494842.1| TetR family transcriptional reg... 157 6e-37
gi|296140097|ref|YP_003647340.1| TetR family transcriptional reg... 157 8e-37
gi|219664383|gb|ACL31233.1| TetR family putative regulatory prot... 155 3e-36
gi|320094220|ref|ZP_08026024.1| TetR family transcriptional regu... 154 7e-36
gi|284034271|ref|YP_003384202.1| TetR family transcriptional reg... 154 8e-36
gi|308176004|ref|YP_003915410.1| transcriptional regulator [Arth... 152 2e-35
gi|239988642|ref|ZP_04709306.1| TetR family transcriptional regu... 147 7e-34
gi|134102203|ref|YP_001107864.1| TetR family transcriptional reg... 146 2e-33
gi|302529846|ref|ZP_07282188.1| transcriptional regulator [Strep... 145 3e-33
gi|269128658|ref|YP_003302028.1| TetR family transcriptional reg... 144 6e-33
gi|229822108|ref|YP_002883634.1| TetR family transcriptional reg... 144 9e-33
gi|256379706|ref|YP_003103366.1| TetR family transcriptional reg... 143 1e-32
gi|330469257|ref|YP_004407000.1| TetR family transcriptional reg... 141 6e-32
gi|296271359|ref|YP_003653991.1| TetR family transcriptional reg... 141 7e-32
gi|256394697|ref|YP_003116261.1| TetR family transcriptional reg... 141 7e-32
gi|271970306|ref|YP_003344502.1| TetR family transcriptional reg... 141 7e-32
gi|300784198|ref|YP_003764489.1| TetR family transcriptional reg... 140 1e-31
gi|159038944|ref|YP_001538197.1| TetR family transcriptional reg... 140 1e-31
gi|328883252|emb|CCA56491.1| Transcriptional regulator, TetR fam... 139 3e-31
gi|21221776|ref|NP_627555.1| transcriptional regulator [Streptom... 139 3e-31
gi|182437927|ref|YP_001825646.1| TetR family transcriptional reg... 138 4e-31
>gi|15608823|ref|NP_216201.1| hypothetical protein Rv1685c [Mycobacterium tuberculosis H37Rv]
gi|15841142|ref|NP_336179.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31792871|ref|NP_855364.1| hypothetical protein Mb1711c [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=207
Score = 412 bits (1058), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 206/207 (99%), Positives = 207/207 (100%), Gaps = 0/207 (0%)
Query 1 VAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
+AAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF
Sbjct 1 MAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
Query 61 GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI 120
GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI
Sbjct 61 GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI 120
Query 121 SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASL 180
SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASL
Sbjct 121 SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASL 180
Query 181 PAEQIVQTIAPNLQRYLTGELPDDLAP 207
PAEQIVQTIAPNLQRYLTGELPDDLAP
Sbjct 181 PAEQIVQTIAPNLQRYLTGELPDDLAP 207
>gi|289443142|ref|ZP_06432886.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289416061|gb|EFD13301.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=207
Score = 407 bits (1047), Expect = 4e-112, Method: Compositional matrix adjust.
Identities = 205/207 (99%), Positives = 206/207 (99%), Gaps = 0/207 (0%)
Query 1 VAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
+AAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF
Sbjct 1 MAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
Query 61 GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI 120
GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI
Sbjct 61 GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI 120
Query 121 SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASL 180
SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASL
Sbjct 121 SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASL 180
Query 181 PAEQIVQTIAPNLQRYLTGELPDDLAP 207
PAEQIVQTIAPNLQR LTGELPDDLAP
Sbjct 181 PAEQIVQTIAPNLQRDLTGELPDDLAP 207
>gi|289761840|ref|ZP_06521218.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
gi|289709346|gb|EFD73362.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
Length=233
Score = 351 bits (900), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 175/178 (99%), Positives = 176/178 (99%), Gaps = 0/178 (0%)
Query 1 VAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
+AAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF
Sbjct 1 MAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
Query 61 GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI 120
GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI
Sbjct 61 GTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLI 120
Query 121 SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFA 178
SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEP
Sbjct 121 SGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPVC 178
>gi|240170132|ref|ZP_04748791.1| hypothetical protein MkanA1_12518 [Mycobacterium kansasii ATCC
12478]
Length=203
Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 161/201 (81%), Positives = 179/201 (90%), Gaps = 0/201 (0%)
Query 7 SRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQL 66
+RRRPGRPAG+SDTRERIL+ ARELFAHNGIDRTSIRAVA AGVDAALVHHYFGTKQQL
Sbjct 3 ARRRPGRPAGNSDTRERILACARELFAHNGIDRTSIRAVATAAGVDAALVHHYFGTKQQL 62
Query 67 FAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG 126
FAAAIH+ +DPM II P+REAPVEELG +LP+ LL +WDSELG LIAT+RSL+SG V
Sbjct 63 FAAAIHVAVDPMDIIAPMREAPVEELGVQLPTALLALWDSELGPRLIATVRSLLSGDGVT 122
Query 127 LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIV 186
RSF E++VT ELGSRVD+PPGTG+IR QFVASQL+GV MARYIV++EPFASLPAEQIV
Sbjct 123 FVRSFFEDMVTAELGSRVDSPPGTGRIRAQFVASQLIGVAMARYIVKMEPFASLPAEQIV 182
Query 187 QTIAPNLQRYLTGELPDDLAP 207
QTIAPNLQRYLTGELP LAP
Sbjct 183 QTIAPNLQRYLTGELPKGLAP 203
>gi|339294640|gb|AEJ46751.1| hypothetical protein CCDC5079_1561 [Mycobacterium tuberculosis
CCDC5079]
gi|339298273|gb|AEJ50383.1| hypothetical protein CCDC5180_1546 [Mycobacterium tuberculosis
CCDC5180]
Length=163
Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/163 (99%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Query 45 VAAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIW 104
+AAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIW
Sbjct 1 MAAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIW 60
Query 105 DSELGAGLIATLRSLISGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMG 164
DSELGAGLIATLRSLISGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMG
Sbjct 61 DSELGAGLIATLRSLISGSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMG 120
Query 165 VVMARYIVRIEPFASLPAEQIVQTIAPNLQRYLTGELPDDLAP 207
VVMARYIVRIEPFASLPAEQIVQTIAPNLQRYLTGELPDDLAP
Sbjct 121 VVMARYIVRIEPFASLPAEQIVQTIAPNLQRYLTGELPDDLAP 163
>gi|183982498|ref|YP_001850789.1| hypothetical protein MMAR_2484 [Mycobacterium marinum M]
gi|183175824|gb|ACC40934.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=207
Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 146/202 (73%), Positives = 179/202 (89%), Gaps = 0/202 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
+ RRRPGRP G+S+TRE IL+ ARELFA NG+DRTS+R+VAA AGVDA+LVHHY+GTKQ
Sbjct 5 NTGRRRPGRPTGTSNTREHILTCARELFALNGLDRTSVRSVAAAAGVDASLVHHYYGTKQ 64
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLFAAAI IPIDP V++ I E PV+ELG KLPS+LLP+WDSELG GL++TLR+L++G++
Sbjct 65 QLFAAAIQIPIDPTVVLEQIVETPVDELGLKLPSVLLPLWDSELGTGLVSTLRALMAGTE 124
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
LARSFL+EVVT E+GSRVD+P GTG+IR QFVASQL+GVVMAR+IV+IEPFASLPA+Q
Sbjct 125 SNLARSFLQEVVTSEVGSRVDSPTGTGRIRAQFVASQLLGVVMARHIVKIEPFASLPADQ 184
Query 185 IVQTIAPNLQRYLTGELPDDLA 206
+ Q IAP LQRYLTGELP+++A
Sbjct 185 VAQAIAPTLQRYLTGELPEEIA 206
>gi|296164582|ref|ZP_06847150.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900062|gb|EFG79500.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=206
Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 146/194 (76%), Positives = 176/194 (91%), Gaps = 0/194 (0%)
Query 14 PAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHI 73
PAGSSDTR RIL+SARELFA NGI TSIRAVAA AGVD+ALVHHYFGTK++LFAAA+H+
Sbjct 13 PAGSSDTRNRILASARELFACNGIRGTSIRAVAAAAGVDSALVHHYFGTKEKLFAAAVHV 72
Query 74 PIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLE 133
PIDPM IIGP+R+ P+EE+GY+LPS+LLP+WDS+LG G IATLRS+++GS+V L R+F+E
Sbjct 73 PIDPMDIIGPLRDVPIEEIGYRLPSMLLPLWDSDLGTGFIATLRSILAGSEVNLFRTFIE 132
Query 134 EVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNL 193
+V+ VE+G RVDNPPG+G IR QFVASQL+GVVMARYI+++EPFASLPAEQ+ +TIAPNL
Sbjct 133 DVIAVEVGPRVDNPPGSGFIRVQFVASQLVGVVMARYILQLEPFASLPAEQVARTIAPNL 192
Query 194 QRYLTGELPDDLAP 207
QRYLTGELPD L P
Sbjct 193 QRYLTGELPDGLVP 206
>gi|254819731|ref|ZP_05224732.1| transcriptional regulator, TetR family protein [Mycobacterium
intracellulare ATCC 13950]
Length=207
Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 143/194 (74%), Positives = 179/194 (93%), Gaps = 0/194 (0%)
Query 14 PAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHI 73
P+G+SDTRERIL+SARELFA NGI TSIRAVAA AGVD+ALVHHYFGTK+QLFAAA+HI
Sbjct 14 PSGNSDTRERILASARELFARNGIRNTSIRAVAASAGVDSALVHHYFGTKEQLFAAAVHI 73
Query 74 PIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLE 133
P+DPM +IGP+RE PVEELGY++PS+LLP+WDSE+GA IATLRS+++GS++ L R+F++
Sbjct 74 PVDPMDVIGPLREVPVEELGYQIPSMLLPLWDSEIGAAFIATLRSILAGSEINLFRAFIQ 133
Query 134 EVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNL 193
+V+ VE+G+RVD+PPG+G IR QFVASQL+GVVMARYI+++EPFASLPAEQ+ +TIAPNL
Sbjct 134 DVIAVEVGARVDDPPGSGIIRIQFVASQLVGVVMARYILQLEPFASLPAEQVARTIAPNL 193
Query 194 QRYLTGELPDDLAP 207
QRYLTG+LP+ LAP
Sbjct 194 QRYLTGDLPEGLAP 207
>gi|342860738|ref|ZP_08717388.1| hypothetical protein MCOL_17743 [Mycobacterium colombiense CECT
3035]
gi|342131762|gb|EGT85019.1| hypothetical protein MCOL_17743 [Mycobacterium colombiense CECT
3035]
Length=207
Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/194 (76%), Positives = 174/194 (90%), Gaps = 0/194 (0%)
Query 14 PAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHI 73
PAGSS +RERIL SARELFA NGI TSIRAVAA AGVD+ALVHHYFGTK++LFAAA+HI
Sbjct 14 PAGSSGSRERILISARELFARNGIRNTSIRAVAAAAGVDSALVHHYFGTKEKLFAAAVHI 73
Query 74 PIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLE 133
PIDPM IIGP+RE PV+ELGY++PSLLLP+WDSE+GA IATLRS+++G ++ L R+F+E
Sbjct 74 PIDPMDIIGPLREMPVDELGYRIPSLLLPLWDSEIGAAFIATLRSILAGEEISLFRTFIE 133
Query 134 EVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNL 193
+V+TVE+GSRVDNPPG+G R QFVASQL+GVVMARYI+R+EPFASLP EQI +TIAPNL
Sbjct 134 DVITVEIGSRVDNPPGSGTTRVQFVASQLVGVVMARYILRLEPFASLPPEQIARTIAPNL 193
Query 194 QRYLTGELPDDLAP 207
QRYLTG+LPD L P
Sbjct 194 QRYLTGDLPDGLLP 207
>gi|118468038|ref|YP_888058.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
gi|118169325|gb|ABK70221.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
Length=211
Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 145/196 (74%), Positives = 172/196 (88%), Gaps = 0/196 (0%)
Query 7 SRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQL 66
+R+RPGRP G+SDTR+RIL+SARELFA NG D+TSIRAVAA A VD ALVHHYFGTK QL
Sbjct 10 ARKRPGRPPGASDTRDRILASARELFARNGFDKTSIRAVAAGADVDPALVHHYFGTKTQL 69
Query 67 FAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG 126
FAAAIHIPIDP+ +IGP+RE PVE++G+ LP LLLP+WDSELG G IATLRS+++G+DV
Sbjct 70 FAAAIHIPIDPLEVIGPLREVPVEQIGHTLPRLLLPLWDSELGKGFIATLRSILAGNDVS 129
Query 127 LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIV 186
L RSFL+EV+ E+GSRVDNP G+G+IR Q+VASQL+GVVMARYI+ +EPF SLP EQI
Sbjct 130 LVRSFLQEVIVGEVGSRVDNPAGSGRIRVQYVASQLVGVVMARYILELEPFKSLPVEQIA 189
Query 187 QTIAPNLQRYLTGELP 202
+TI PNLQRYLTGELP
Sbjct 190 ETIGPNLQRYLTGELP 205
>gi|183982496|ref|YP_001850787.1| hypothetical protein MMAR_2482 [Mycobacterium marinum M]
gi|183175822|gb|ACC40932.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=207
Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/202 (71%), Positives = 176/202 (88%), Gaps = 0/202 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
+ RRRPGRP G+S+TRE IL+ ARELFA NG+DRTS+R+VAA AGVDA+LVHHY+GTKQ
Sbjct 5 NTGRRRPGRPIGTSNTREHILTCARELFALNGLDRTSVRSVAAAAGVDASLVHHYYGTKQ 64
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLFAAAI IPIDP ++ I E PV+ELG K+PS+LLP+WDSEL GL++TLR+L++G++
Sbjct 65 QLFAAAIQIPIDPTAVLEQIVETPVDELGLKIPSVLLPLWDSELSTGLVSTLRALMAGTE 124
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
LARSFL+EVVT E+GSRVD+P GTG+IR QFV SQL+GVVMAR+IV+IEPFASLPA+Q
Sbjct 125 PNLARSFLQEVVTSEVGSRVDSPTGTGRIRAQFVTSQLLGVVMARHIVKIEPFASLPADQ 184
Query 185 IVQTIAPNLQRYLTGELPDDLA 206
+ Q IAP LQRYLTGELP+++A
Sbjct 185 VAQAIAPTLQRYLTGELPEEIA 206
>gi|120404273|ref|YP_954102.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119957091|gb|ABM14096.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=206
Score = 304 bits (778), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 141/198 (72%), Positives = 170/198 (86%), Gaps = 0/198 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
+ R+RPGRP G+SDTR+RIL ARELFA NGI TSIR++AA AGVD ALVHHYFGTK
Sbjct 4 NADRKRPGRPPGTSDTRDRILECARELFARNGITNTSIRSIAAGAGVDPALVHHYFGTKT 63
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLFAAAI IPIDPM IIGP++E PV++LG LPSLLLP+WDSELG G IATLRS+++GSD
Sbjct 64 QLFAAAIEIPIDPMSIIGPLKEVPVDQLGRALPSLLLPLWDSELGKGFIATLRSILAGSD 123
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
V + RSFL++++ E+G RVD+PPG+G++R QFVASQL+G+VMARYI+ +EPF SLP EQ
Sbjct 124 VSMVRSFLQDLIATEVGGRVDDPPGSGRVRVQFVASQLVGIVMARYILELEPFKSLPVEQ 183
Query 185 IVQTIAPNLQRYLTGELP 202
IV T+APNLQRYLTGELP
Sbjct 184 IVDTVAPNLQRYLTGELP 201
>gi|108799925|ref|YP_640122.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119869035|ref|YP_938987.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108770344|gb|ABG09066.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
gi|119695124|gb|ABL92197.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
Length=204
Score = 303 bits (777), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 140/198 (71%), Positives = 170/198 (86%), Gaps = 0/198 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
+ R+RPGRP G+SD R+RIL +AR LFA NGID+TSIRA+AA AGVD ALVHHYFGTKQ
Sbjct 4 NAERKRPGRPPGTSDNRDRILQTARALFARNGIDKTSIRAIAAGAGVDPALVHHYFGTKQ 63
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLF AAI PIDPM +IGP+R+ PVE LGY LP++LLPIWDSELG G IATLRSL++GS+
Sbjct 64 QLFVAAIQAPIDPMTVIGPLRDVPVERLGYVLPTILLPIWDSELGHGFIATLRSLLAGSE 123
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
VGL R+F +E++ E+G RVD+PPG+G++R QFVASQL+GVVMARYI+ +EPFASLP EQ
Sbjct 124 VGLLRTFFQEIIAAEIGPRVDDPPGSGRVRVQFVASQLLGVVMARYILELEPFASLPVEQ 183
Query 185 IVQTIAPNLQRYLTGELP 202
I +TI PNLQRYLTG++P
Sbjct 184 IAETIGPNLQRYLTGDVP 201
>gi|126435553|ref|YP_001071244.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126235353|gb|ABN98753.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=204
Score = 303 bits (777), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 140/198 (71%), Positives = 170/198 (86%), Gaps = 0/198 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
+ R+RPGRP G+SD R+RIL +AR LFA NGID+TSIRA+AA AGVD ALVHHYFGTKQ
Sbjct 4 NAERKRPGRPPGTSDNRDRILHTARALFARNGIDKTSIRAIAAGAGVDPALVHHYFGTKQ 63
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLF AAI PIDPM +IGP+R+ PVE LGY LP++LLPIWDSELG G IATLRSL++GS+
Sbjct 64 QLFVAAIQAPIDPMTVIGPLRDVPVERLGYVLPTILLPIWDSELGHGFIATLRSLLAGSE 123
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
VGL R+F +E++ E+G RVD+PPG+G++R QFVASQL+GVVMARYI+ +EPFASLP EQ
Sbjct 124 VGLLRTFFQEIIAAEIGPRVDDPPGSGRVRVQFVASQLLGVVMARYILELEPFASLPVEQ 183
Query 185 IVQTIAPNLQRYLTGELP 202
I +TI PNLQRYLTG++P
Sbjct 184 IAETIGPNLQRYLTGDVP 201
>gi|118463269|ref|YP_882271.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|118164556|gb|ABK65453.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
Length=207
Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/194 (73%), Positives = 170/194 (88%), Gaps = 0/194 (0%)
Query 14 PAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHI 73
PAGSS +RERIL+SARELFA NGI TSIRAVAA AGVD+ALVHHYFGTK++LFAAA+ I
Sbjct 14 PAGSSGSRERILASARELFARNGIRNTSIRAVAAAAGVDSALVHHYFGTKEKLFAAAVQI 73
Query 74 PIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLE 133
PIDPM +IGP+RE PV++LGY LPS+LLP+WDSE+GA IATLRS+++G ++ L R+F++
Sbjct 74 PIDPMQVIGPLREVPVDDLGYALPSMLLPLWDSEVGAAFIATLRSILAGEEISLFRTFIQ 133
Query 134 EVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNL 193
+V+ VE+G RVDNP G+G IR QFVASQL+GVVMARYI+ +EPFASLP EQI TIAPNL
Sbjct 134 DVIGVEVGPRVDNPAGSGVIRIQFVASQLVGVVMARYILELEPFASLPPEQIAATIAPNL 193
Query 194 QRYLTGELPDDLAP 207
QRYLTG+LPD LAP
Sbjct 194 QRYLTGDLPDGLAP 207
>gi|41407489|ref|NP_960325.1| hypothetical protein MAP1391c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254775539|ref|ZP_05217055.1| hypothetical protein MaviaA2_12843 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395841|gb|AAS03708.1| hypothetical protein MAP_1391c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457843|gb|EGO36837.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis
S397]
Length=207
Score = 294 bits (752), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 140/193 (73%), Positives = 169/193 (88%), Gaps = 0/193 (0%)
Query 15 AGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIP 74
AGSS +RERIL+SARELFA NGI TSIRAVAA AGVD+ALVHHYFGTK++LFAAA+ IP
Sbjct 15 AGSSGSRERILASARELFARNGIRNTSIRAVAAAAGVDSALVHHYFGTKEKLFAAAVQIP 74
Query 75 IDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLEE 134
IDPM +IGP+RE PV++LGY LPS+LLP+WDSE+GA IATLRS+++G ++ L R+F+++
Sbjct 75 IDPMQVIGPLREVPVDDLGYALPSMLLPLWDSEVGAAFIATLRSILAGEEISLFRTFIQD 134
Query 135 VVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNLQ 194
V+ VE+G RVDNP G+G IR QFVASQL+GVVMARYI+ +EPFASLP EQI TIAPNLQ
Sbjct 135 VIGVEVGPRVDNPAGSGVIRIQFVASQLVGVVMARYILELEPFASLPPEQIAATIAPNLQ 194
Query 195 RYLTGELPDDLAP 207
RYLTG+LPD LAP
Sbjct 195 RYLTGDLPDGLAP 207
>gi|118617296|ref|YP_905628.1| hypothetical protein MUL_1664 [Mycobacterium ulcerans Agy99]
gi|118569406|gb|ABL04157.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=199
Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/193 (71%), Positives = 167/193 (87%), Gaps = 0/193 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
+ RRRPGRP G+S+TRE IL+ ARELFA NG+DRTS+R+VAA AGVDA+LVHHY+GTKQ
Sbjct 5 NTGRRRPGRPTGTSNTREHILTCARELFALNGLDRTSVRSVAAAAGVDASLVHHYYGTKQ 64
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLFAAAI IPIDP V++ I E PV+ELG K+PS+ LP+WDSEL GL+ATLR+L++G++
Sbjct 65 QLFAAAIQIPIDPTVVLEQIVETPVDELGLKIPSVPLPLWDSELSTGLVATLRALMAGTE 124
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
LARSFL+EVVT E+GSRVD+P GTG+IR QFV SQL+GVVMAR+IV+IEPFASLPA+Q
Sbjct 125 SNLARSFLQEVVTSEVGSRVDSPTGTGRIRAQFVTSQLLGVVMARHIVKIEPFASLPADQ 184
Query 185 IVQTIAPNLQRYL 197
+ Q IAP LQRYL
Sbjct 185 VAQAIAPTLQRYL 197
>gi|333990483|ref|YP_004523097.1| hypothetical protein JDM601_1842 [Mycobacterium sp. JDM601]
gi|333486450|gb|AEF35842.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=206
Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 140/201 (70%), Positives = 169/201 (85%), Gaps = 0/201 (0%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
D S RRPGRP+GSSDTR+RILSSARELFAHNG TSIRAVAA AGVDAALVHHY+GTKQ
Sbjct 4 DASNRRPGRPSGSSDTRQRILSSARELFAHNGFQNTSIRAVAADAGVDAALVHHYYGTKQ 63
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSD 124
QLFAAA +P+DPMV++GP+REAPVE+LG LP LLLP+WDS+ G GLIA +RS+++G++
Sbjct 64 QLFAAATELPVDPMVVLGPLREAPVEQLGRILPELLLPLWDSQAGTGLIAAMRSMLTGTE 123
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
V LARSF ++V EL SR+D P GTG +R +F ASQLMG+V+ARYIV +EP ASLP +Q
Sbjct 124 VPLARSFFRDIVVAELASRIDVPAGTGVLRAEFTASQLMGIVVARYIVGLEPLASLPGDQ 183
Query 185 IVQTIAPNLQRYLTGELPDDL 205
+V +AP LQRYLTG+LPD L
Sbjct 184 VVAMVAPTLQRYLTGDLPDRL 204
>gi|183983529|ref|YP_001851820.1| hypothetical protein MMAR_3548 [Mycobacterium marinum M]
gi|183176855|gb|ACC41965.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=264
Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/186 (75%), Positives = 159/186 (86%), Gaps = 0/186 (0%)
Query 16 GSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIPI 75
SSDTR+RIL+SARELFA NGIDRTSIRAVAA A VDAALVHHYFGTKQQLFAAAIH+PI
Sbjct 79 NSSDTRQRILASARELFASNGIDRTSIRAVAAAADVDAALVHHYFGTKQQLFAAAIHLPI 138
Query 76 DPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLEEV 135
DP +++ ++ P ELG+ LPS+LLP+WDSELG GLIA+LRSL G DV LARSFL+EV
Sbjct 139 DPKLVLKRMQNTPTAELGFALPSMLLPMWDSELGTGLIASLRSLFGGGDVDLARSFLQEV 198
Query 136 VTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNLQR 195
VT E+ S VDNP GTG IR Q VASQL+GVVMARYI++IEPFAS+PAE I + IAPNLQR
Sbjct 199 VTAEMASLVDNPAGTGMIRAQLVASQLLGVVMARYILQIEPFASMPAEDIARAIAPNLQR 258
Query 196 YLTGEL 201
YLTGE+
Sbjct 259 YLTGEI 264
>gi|118618218|ref|YP_906550.1| hypothetical protein MUL_2781 [Mycobacterium ulcerans Agy99]
gi|118570328|gb|ABL05079.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=243
Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/186 (75%), Positives = 158/186 (85%), Gaps = 0/186 (0%)
Query 16 GSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIPI 75
SSDTR+RIL+SARELFA NGIDRTSIRAVAA A VDAALVHHYFGTKQQLFAAAIH+PI
Sbjct 58 NSSDTRQRILASARELFASNGIDRTSIRAVAAAADVDAALVHHYFGTKQQLFAAAIHLPI 117
Query 76 DPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLEEV 135
DP +++ ++ P ELG+ LPS+LLP+WDSELG GLIA+LRSL G DV LARSFL+EV
Sbjct 118 DPKLVLKRMQNTPTAELGFALPSMLLPMWDSELGTGLIASLRSLFGGGDVDLARSFLQEV 177
Query 136 VTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNLQR 195
VT E+ S VDNP GTG IR Q VASQL+GVVMARYI++I PFAS+PAE I + IAPNLQR
Sbjct 178 VTAEMASLVDNPAGTGMIRAQLVASQLLGVVMARYILQIGPFASMPAEDIARAIAPNLQR 237
Query 196 YLTGEL 201
YLTGE+
Sbjct 238 YLTGEI 243
>gi|169629437|ref|YP_001703086.1| TetR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169241404|emb|CAM62432.1| Putative transcriptional regulator, TetR family [Mycobacterium
abscessus]
Length=201
Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 107/196 (55%), Positives = 147/196 (75%), Gaps = 0/196 (0%)
Query 7 SRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQL 66
S +RPGR G+S R+ IL+SAR+LF+ NGID+TSIRA+A+ AGVD ALVHHYFGTK L
Sbjct 2 SSKRPGRRPGTSSARDDILASARKLFSLNGIDKTSIRAIASDAGVDPALVHHYFGTKLDL 61
Query 67 FAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG 126
F + +P+DP V++ P+R+ PV+ELG +P L++ +WDSELGA ++A RS ++G+D G
Sbjct 62 FREVVQLPVDPSVVLQPLRDVPVDELGVTIPRLIIALWDSELGANMLAVFRSALTGADDG 121
Query 127 LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIV 186
L R F EV+ + RVD+PPG+G +R +F +Q+ G+++ RYI+ IEP ASL AEQI
Sbjct 122 LVRVFFREVLVNIIAERVDSPPGSGVLRAEFAITQMAGILVGRYIMAIEPLASLTAEQIA 181
Query 187 QTIAPNLQRYLTGELP 202
T+ PN+QRYLTG LP
Sbjct 182 LTVGPNIQRYLTGALP 197
>gi|226360091|ref|YP_002777869.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
gi|226238576|dbj|BAH48924.1| putative TetR family transcriptional regulator [Rhodococcus opacus
B4]
Length=208
Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/193 (54%), Positives = 142/193 (74%), Gaps = 0/193 (0%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
R GR G+ DTR RIL++AR+LFA NG D+TS+R+VAA AGVD+ALVHHYFGTK+QLF A
Sbjct 15 RTGRRRGNPDTRSRILTTARKLFAQNGFDKTSVRSVAAGAGVDSALVHHYFGTKRQLFLA 74
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLAR 129
++ IP+DP +I P+ + P +E+G +L + +W+S ++A RS ++G++ L R
Sbjct 75 SVDIPVDPTKVIAPVLDTPRDEIGSRLALAVFSVWESPHKPAVVAAFRSAMAGNEPTLIR 134
Query 130 SFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTI 189
+FL EVV +LG RVD PPGTG +R Q VASQ+ GV++ RY++ EP ASLP + +V +
Sbjct 135 TFLLEVVLRDLGPRVDEPPGTGMLRMQLVASQMAGVLVTRYVLEFEPLASLPVDDLVAIV 194
Query 190 APNLQRYLTGELP 202
AP LQRYLTG+LP
Sbjct 195 APTLQRYLTGDLP 207
>gi|111017960|ref|YP_700932.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110817490|gb|ABG92774.1| transcriptional regulator, TetR family protein [Rhodococcus jostii
RHA1]
Length=207
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/193 (52%), Positives = 137/193 (71%), Gaps = 0/193 (0%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
R GR G+ DTR RIL++AR+LFA NG D+TS+R+VA AGVD+AL+HHYFGTK++LF A
Sbjct 15 RTGRRPGNPDTRSRILAAARKLFAQNGFDKTSVRSVATGAGVDSALIHHYFGTKRELFLA 74
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLAR 129
++ IP+DP +I P+ + P E+G L + +W+S ++A RS ++G++ L R
Sbjct 75 SVDIPVDPTQVIAPVLDIPTGEVGSHLARAVFSVWESPHKPAVVAAFRSAMAGNEPNLIR 134
Query 130 SFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTI 189
+FL EVV +LG RVD PPGTG +R Q VASQ+ GV++ RYI+ EP ASLP + +V +
Sbjct 135 TFLLEVVLRDLGPRVDEPPGTGMLRMQLVASQMAGVLVTRYILEFEPLASLPVDDLVAIV 194
Query 190 APNLQRYLTGELP 202
P LQRYLTG LP
Sbjct 195 GPTLQRYLTGALP 207
>gi|229492773|ref|ZP_04386574.1| transcriptional regulator, TetR family [Rhodococcus erythropolis
SK121]
gi|229320432|gb|EEN86252.1| transcriptional regulator, TetR family [Rhodococcus erythropolis
SK121]
Length=205
Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/193 (51%), Positives = 136/193 (71%), Gaps = 0/193 (0%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
R GR G S+TR +IL SAR F+ NG RT++R++AA A VD A++HH+FG+K+QLF A
Sbjct 12 RSGRRPGKSETRAQILDSARRAFSQNGFRRTTVRSIAAAADVDPAMIHHHFGSKEQLFTA 71
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLAR 129
AI +PIDP+ ++GP+ +P E LG L ++ +W+SE ++A RS ISG L +
Sbjct 72 AIALPIDPVQVLGPVHSSPTENLGENLLRAVIGLWESEHQPAILAAFRSAISGDGSQLIQ 131
Query 130 SFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTI 189
SFL +VV ++ RVD PPGTG IR + VASQ+ G+++ RY++ +EP ASL + +V +
Sbjct 132 SFLLDVVLRDIIPRVDTPPGTGLIRAELVASQMAGLLVTRYVLGLEPLASLSVDALVPLV 191
Query 190 APNLQRYLTGELP 202
APNLQRYLTGELP
Sbjct 192 APNLQRYLTGELP 204
>gi|226306761|ref|YP_002766721.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226185878|dbj|BAH33982.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=207
Score = 200 bits (509), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 99/200 (50%), Positives = 140/200 (70%), Gaps = 4/200 (2%)
Query 3 APDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGT 62
AP S RRPG+ S+TR +IL SAR F+ NG RT++R++AA A VD A++HH+FG+
Sbjct 11 APIRSGRRPGK----SETRAQILDSARRAFSQNGFRRTTVRSIAAAADVDPAMIHHHFGS 66
Query 63 KQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISG 122
K+QLF AAI +PIDP+ ++GP+ +P E LG L ++ +W+SE ++A RS +SG
Sbjct 67 KEQLFTAAIALPIDPVQVLGPVHASPTESLGENLLRAVIGLWESEHQPAILAAFRSAVSG 126
Query 123 SDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPA 182
L +SFL +VV ++ RVD PPGTG IR + VASQ+ G+++ RY++ +EP ASL
Sbjct 127 DGSQLIQSFLLDVVLRDIIPRVDTPPGTGLIRAELVASQMAGLLVTRYVLGLEPLASLSV 186
Query 183 EQIVQTIAPNLQRYLTGELP 202
+ +V +APNLQRYLTGELP
Sbjct 187 DALVPLVAPNLQRYLTGELP 206
>gi|312139865|ref|YP_004007201.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
gi|311889204|emb|CBH48518.1| putative TetR family transcriptional regulator [Rhodococcus equi
103S]
Length=223
Score = 188 bits (477), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 127/192 (67%), Gaps = 0/192 (0%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
RPGR G S TR+RILS+ARE FA NG D T+IRA+AA AGVD+ALVHHYFGTKQQL
Sbjct 11 RPGRRPGPSTTRDRILSAARERFADNGFDHTTIRAIAADAGVDSALVHHYFGTKQQLLVE 70
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLAR 129
A+ +P+DP I G PV ELG L ++ IWDS ++A +RS ++G L R
Sbjct 71 AVALPMDPASIAGSFEAVPVHELGEALARTVIGIWDSPHQPAVVAAVRSALTGGRERLLR 130
Query 130 SFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTI 189
SFL EV ++ RVD+PPGTG++R VASQ+ G+ + R+++ + A L ++ + +
Sbjct 131 SFLLEVALRDVVPRVDSPPGTGELRVALVASQMAGLFLTRHLLDVGALADLSTDEAARLV 190
Query 190 APNLQRYLTGEL 201
AP LQ YLTG L
Sbjct 191 APTLQAYLTGPL 202
>gi|325674258|ref|ZP_08153947.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325554938|gb|EGD24611.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=223
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/192 (50%), Positives = 127/192 (67%), Gaps = 0/192 (0%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
RPGR G S TR+RILS+ARE FA NG D T+IRA+AA AGVD+ALVHHYFGTKQQL
Sbjct 11 RPGRRPGPSTTRDRILSAARERFADNGFDHTTIRAIAADAGVDSALVHHYFGTKQQLLVE 70
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLAR 129
A+ +P+DP I G PV ELG + ++ IWDS ++A +RS ++G L R
Sbjct 71 AVALPMDPASIAGSFEAVPVHELGEAIARTVIGIWDSPHQPAVVAAVRSALTGGRERLLR 130
Query 130 SFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTI 189
SFL EV ++ RVD+PPGTG++R VASQ+ G+ + R+++ + A L ++ + +
Sbjct 131 SFLLEVALRDVVPRVDSPPGTGELRVALVASQMAGLFLTRHLLDVGALADLSTDEAARLV 190
Query 190 APNLQRYLTGEL 201
AP LQ YLTG L
Sbjct 191 APTLQAYLTGPL 202
>gi|54023955|ref|YP_118197.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54015463|dbj|BAD56833.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=203
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/181 (49%), Positives = 122/181 (68%), Gaps = 0/181 (0%)
Query 21 RERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPMVI 80
R+ IL +AR FA +G DRTSIRAVAA AGVD ALVHHYFGTKQQLF A + +P+DP +
Sbjct 20 RQAILDAARVRFAEHGFDRTSIRAVAADAGVDPALVHHYFGTKQQLFTAVVDLPVDPEAV 79
Query 81 IGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLARSFLEEVVTVEL 140
+ I PVE+LG + + IWDS G ++A R+L++G++ LAR+F+ EVV +
Sbjct 80 LAVIDATPVEQLGATIIRAVTAIWDSPAGPAVVAVARTLLTGAEPALARTFVLEVVLERV 139
Query 141 GSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNLQRYLTGE 200
R+ G+ R ASQ+MG+++AR I+ +EP AS+P +++ + P LQRYLTG+
Sbjct 140 RRRIATDTDDGRARVALTASQMMGIMVARKIIGVEPLASMPLDELAAAVGPTLQRYLTGD 199
Query 201 L 201
L
Sbjct 200 L 200
>gi|145595694|ref|YP_001159991.1| regulatory protein TetR [Salinispora tropica CNB-440]
gi|145305031|gb|ABP55613.1| transcriptional regulator, TetR family [Salinispora tropica CNB-440]
Length=215
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 117/200 (59%), Gaps = 1/200 (0%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
RR GR G+ DTR IL++AR FA G D+ SIRA+AA AGVD ALVHHYFG+K LF
Sbjct 3 RRTGRRPGNPDTRATILAAARTTFAERGFDKASIRAIAATAGVDPALVHHYFGSKNTLFL 62
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG-L 127
AA++ P DP ++ + +++G +L L IWDS G +A LRS +S L
Sbjct 63 AAMNAPADPAEVLRTVLAGDPDQIGERLIRAFLGIWDSPAGTSAVALLRSAVSNEWTARL 122
Query 128 ARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
R FL V + ++ P +R VASQL G+ MARY++R+EP A+ E +V
Sbjct 123 LREFLTTQVLRRVLDHLEVDPAQAPLRGSLVASQLFGLAMARYVIRLEPIATAAPETLVD 182
Query 188 TIAPNLQRYLTGELPDDLAP 207
++ P +QRYLT L + P
Sbjct 183 SVGPTMQRYLTAPLDGQVGP 202
>gi|333921261|ref|YP_004494842.1| TetR family transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483482|gb|AEF42042.1| Transcriptional regulator, TetR family [Amycolicicoccus subflavus
DQS3-9A1]
Length=212
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/192 (42%), Positives = 125/192 (66%), Gaps = 4/192 (2%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
RRPG P S+TRE I+S+AR +FA +G D+ S+R +AA+AGVD AL++H+FG+KQ+LF
Sbjct 8 RRPGDP---SETRETIVSAARAMFAKHGFDKASVRKIAAEAGVDPALINHHFGSKQKLFV 64
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVGLA 128
AA+ P++P+ ++ + ++LG+++ + +WDS G+GL +R ++ + +A
Sbjct 65 AAMRAPVNPVEVVQRLAAEGPDKLGFRIAETFVSVWDSPAGSGLAQAMRGALAQDGMTVA 124
Query 129 -RSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
R F+ + + S +D P ++R VASQL+G+ + RYI+RIEP AS E +V
Sbjct 125 MREFVTHQILPAIASALDAPAPEKRVRASLVASQLIGLAVTRYILRIEPLASASPEAVVG 184
Query 188 TIAPNLQRYLTG 199
+I P LQ YLTG
Sbjct 185 SIGPVLQGYLTG 196
>gi|296140097|ref|YP_003647340.1| TetR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028231|gb|ADG79001.1| transcriptional regulator, TetR family [Tsukamurella paurometabola
DSM 20162]
Length=205
Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/194 (45%), Positives = 124/194 (64%), Gaps = 1/194 (0%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
RR GR GS DTR IL++AR FA G+ T++R++A AGVD+ALVHHYFGTKQ L+
Sbjct 6 RRSGRRTGSPDTRAEILTAARTAFARGGLAGTTVRSIAEAAGVDSALVHHYFGTKQDLYL 65
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGS-DVGL 127
AA+ IP+DP + P+REAP+++ L LL +WD L +A +R+ + S D +
Sbjct 66 AALAIPVDPEFVRAPLREAPLDDAARALLRALLTMWDGPLRDVGVAVIRTNLGNSGDPAI 125
Query 128 ARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
R FL E+ EL R++ PG G +R + +Q+ G+++ARYIV EP ASL +++V
Sbjct 126 VRGFLLEIALAELIGRMEAGPGDGVLRANLMVAQVFGLLVARYIVGFEPLASLTVDEVVD 185
Query 188 TIAPNLQRYLTGEL 201
AP LQ+ +TG L
Sbjct 186 LAAPPLQQVITGPL 199
>gi|219664383|gb|ACL31233.1| TetR family putative regulatory protein [Rhodococcus sp. TFB]
Length=200
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/197 (44%), Positives = 118/197 (60%), Gaps = 1/197 (0%)
Query 6 NSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQ 65
+R R GR G++DTR +ILS+AR+ FA G D ++RAVAA AGVDAALVH+YFGTK++
Sbjct 2 TARERSGRRPGTTDTRNQILSAARKEFAQAGYDAATVRAVAASAGVDAALVHYYFGTKEK 61
Query 66 LFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLR-SLISGSD 124
LF A + P+D ++ I + P + L +L L +WDS G+ +A LR ++
Sbjct 62 LFLAVMEAPLDLGHLVDLILDGPRDRLAERLLRTALELWDSPAGSAAMAVLRGAMAHDGS 121
Query 125 VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQ 184
L R FL + L V+ R VA+QLMG+ RY++ +EP AS +
Sbjct 122 ATLLREFLLKRALQPLTESVERDTELALWRASLVATQLMGLASMRYLLALEPLASASHTR 181
Query 185 IVQTIAPNLQRYLTGEL 201
IV IAPN+QRYLTGEL
Sbjct 182 IVDLIAPNVQRYLTGEL 198
>gi|320094220|ref|ZP_08026024.1| TetR family transcriptional regulator [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978845|gb|EFW10384.1| TetR family transcriptional regulator [Actinomyces sp. oral taxon
178 str. F0338]
Length=266
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/188 (44%), Positives = 122/188 (65%), Gaps = 5/188 (2%)
Query 20 TRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPMV 79
TRERIL++AR+ FA G S+R++A++AGVD +LVHHYFGTK+ LF +A+ +P DPM
Sbjct 75 TRERILAAARQAFASGGYAAVSVRSIASQAGVDQSLVHHYFGTKKDLFLSAMDVPFDPME 134
Query 80 IIG----PIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLIS-GSDVGLARSFLEE 134
+G + + +E+LG + +L ++ S G +A +R+ ++ G V FL E
Sbjct 135 HMGGALEKLSDGTLEDLGEAVVRGILAVFASPHGRDYVAVMRARMAPGGPVESVAGFLTE 194
Query 135 VVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNLQ 194
V +D+PPGTG +RT ASQ++G+++ARY++R++P A L EQ+V AP LQ
Sbjct 195 EVYSLAAWLLDDPPGTGALRTDLAASQVIGLIVARYVLRLQPLADLDDEQVVAHYAPVLQ 254
Query 195 RYLTGELP 202
RY+TG LP
Sbjct 255 RYMTGPLP 262
>gi|284034271|ref|YP_003384202.1| TetR family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283813564|gb|ADB35403.1| transcriptional regulator, TetR family [Kribbella flavida DSM
17836]
Length=194
Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/193 (45%), Positives = 118/193 (62%), Gaps = 4/193 (2%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
R PGR G DTR IL +ARE FA G TSIR VA AGVDAALVHHYFG K +LF
Sbjct 4 RSPGRRPGGPDTRGEILRAARESFAGKGFAATSIRGVARDAGVDAALVHHYFGGKDELFV 63
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAG-LIATLRSLISGSDVG- 126
A+ +PIDP + I + PV++LG ++ ++ L +W+S G + A LRS++S V
Sbjct 64 EAMALPIDPRQVAATILDGPVDDLGRRIVTVFLGVWESPDGQQRMKALLRSMVSSDQVAQ 123
Query 127 LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIV 186
L R L +V + +D P ++R VASQL+G+ + RY++ ++P + PA ++V
Sbjct 124 LMREGLTRMVIAPVSKALDVP--DARLRVSLVASQLVGLALTRYVLELDPITTEPAAELV 181
Query 187 QTIAPNLQRYLTG 199
IAP LQ YLTG
Sbjct 182 DRIAPALQHYLTG 194
>gi|308176004|ref|YP_003915410.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
gi|307743467|emb|CBT74439.1| possible transcriptional regulator [Arthrobacter arilaitensis
Re117]
Length=212
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/200 (43%), Positives = 121/200 (61%), Gaps = 6/200 (3%)
Query 7 SRRRPGRPAGSSD--TRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
S R+ GRP GS+ + IL +A + FAH G + S+R+VA +AGVD ALVHHYF K
Sbjct 11 SARKRGRPKGSTAGAAKTMILKAASKEFAHVGYEAASLRSVARRAGVDPALVHHYFKDKS 70
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDS-ELGAGLIATLRSLISGS 123
LF ++HIPI+P II AP++++G L LL W A +R LIS S
Sbjct 71 DLFVQSMHIPINPGRIIAEAASAPLDQMGEALTRALLDTWRKPAFRTAATAMVRGLISSS 130
Query 124 D-VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPA 182
+ R FL E + LGSR+ P + R VASQ++G++++RYI+ +EP S+
Sbjct 131 RATNMLRPFLHEQIFSRLGSRL--PQEQAEQRVALVASQIIGLIVSRYIIDLEPLVSMED 188
Query 183 EQIVQTIAPNLQRYLTGELP 202
+Q+++ +AP +QRYLTGELP
Sbjct 189 QQVIELVAPTIQRYLTGELP 208
>gi|239988642|ref|ZP_04709306.1| TetR family transcriptional regulator [Streptomyces roseosporus
NRRL 11379]
gi|291445631|ref|ZP_06585021.1| TetR-family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
gi|291348578|gb|EFE75482.1| TetR-family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
Length=206
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 117/200 (59%), Gaps = 7/200 (3%)
Query 2 AAPDNSRRRPGRPAGSS--DTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHY 59
AAP R RP R A S D R RIL +AR FA G D+TSIR +A AGVDAALVHHY
Sbjct 7 AAP-RRRGRPSRKAASEGPDARTRILEAARTEFAERGYDKTSIRGIAKAAGVDAALVHHY 65
Query 60 FGTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIW-DSELGAGLIATLRS 118
FGTK ++FAAAI + +P ++I + P E LG +L L +W D L+A LRS
Sbjct 66 FGTKDEVFAAAIEVTFEPALVIPTVLGGPSEGLGERLARFFLSVWEDPGTRTPLLAILRS 125
Query 119 LISG-SDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPF 177
++ + + R F+ + + + +D P T R + AS ++G+ M RY+VR EP
Sbjct 126 AVTHEAAANVLRDFVLRRLLERIAAELDVPDPT--FRAELAASHMLGIAMLRYVVRAEPL 183
Query 178 ASLPAEQIVQTIAPNLQRYL 197
AS E+IV +AP LQRYL
Sbjct 184 ASADPEEIVAMVAPTLQRYL 203
>gi|134102203|ref|YP_001107864.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291007489|ref|ZP_06565462.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133914826|emb|CAM04939.1| transcriptional regulator, TetR family [Saccharopolyspora erythraea
NRRL 2338]
Length=207
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/190 (42%), Positives = 118/190 (63%), Gaps = 11/190 (5%)
Query 19 DTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPM 78
DTR ++S+ARE+F G D ++RA+A +AGVDAA+V+H+FG K LF AA+ IP++P
Sbjct 21 DTRAALVSAAREVFIEQGYDGATVRAIATRAGVDAAMVNHWFGGKAGLFTAAVSIPVNPA 80
Query 79 VIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISG-SDVGLARSFLEEVV- 136
++ I + P + +G ++ + +WD E G A +RS+ + + V + R F+ V+
Sbjct 81 EVLPKILDGPRDRVGERMVRTFVTVWDREGGGAFAALVRSIATHETAVRMLREFITTVMF 140
Query 137 ---TVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNL 193
ELG VD P ++R ASQ++G+ M RY+ +EP AS AE +V +APNL
Sbjct 141 GGLVRELG--VDRP----ELRASLCASQVVGLGMVRYVAALEPIASADAETVVAAVAPNL 194
Query 194 QRYLTGELPD 203
QRYLTG+L D
Sbjct 195 QRYLTGDLSD 204
>gi|302529846|ref|ZP_07282188.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302438741|gb|EFL10557.1| transcriptional regulator [Streptomyces sp. AA4]
Length=191
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (39%), Positives = 119/190 (63%), Gaps = 6/190 (3%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
R GR G ++TRE IL++AR+LF NG + +IRA+AA+AGV+ ALVHH+FG+K Q+FA
Sbjct 3 RTGRRPGQTETREAILAAARDLFGRNGYEGATIRAIAAEAGVNPALVHHFFGSKDQVFAT 62
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELG-AGLIATLRSLISGSDVG-L 127
A+H+P DP V++ I + P E+G +L L L +W++ LRS+ + +
Sbjct 63 ALHLPADPGVVVAAILDGPRAEVGERLVRLFLTLWETPASRDAFFGVLRSVSTTEQAADM 122
Query 128 ARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
R F++ + ++ +D PP +R +A+QL+G+ M RY++++EP A E +V
Sbjct 123 LRGFIQGALLDKIADALDIPP----LRVTGIAAQLVGLAMVRYVIQVEPLAGASHEDVVA 178
Query 188 TIAPNLQRYL 197
IAP +Q+Y+
Sbjct 179 LIAPAVQQYV 188
>gi|269128658|ref|YP_003302028.1| TetR family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268313616|gb|ACY99990.1| transcriptional regulator, TetR family [Thermomonospora curvata
DSM 43183]
Length=198
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/201 (42%), Positives = 120/201 (60%), Gaps = 7/201 (3%)
Query 3 APDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGT 62
A S R GR G ++TRE+IL AR LFA G D S+RA+A +AGVD ALVHH+FGT
Sbjct 2 AAGASERTRGRRPGPTETREQILDCARRLFADKGYDGASLRAIAREAGVDPALVHHFFGT 61
Query 63 KQQLFAAAIHIPIDPMVIIGPIREAPV-EELGYKLPSLLLPIW-DSELGAGLIATLRSLI 120
KQ +F AA+++P+DP ++ +R+ P ELG L L +W D E ++A +RS +
Sbjct 62 KQGVFIAAMNLPLDPAAVVARLRDVPSRRELGAALAETFLGVWEDPERRIPMLALVRSAM 121
Query 121 SGSDVG-LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFAS 179
+ V + R F+ + L R G IR + A QL+GV M RY++ +EP AS
Sbjct 122 TNEQVATMLRQFIAATLLGPLAERF----GIAPIRMEAAAGQLVGVAMLRYVLGLEPIAS 177
Query 180 LPAEQIVQTIAPNLQRYLTGE 200
A+++V+ +AP LQR+ G+
Sbjct 178 ATAQELVELLAPALQRHFDGD 198
>gi|229822108|ref|YP_002883634.1| TetR family transcriptional regulator [Beutenbergia cavernae
DSM 12333]
gi|229568021|gb|ACQ81872.1| transcriptional regulator, TetR family [Beutenbergia cavernae
DSM 12333]
Length=203
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/195 (41%), Positives = 116/195 (60%), Gaps = 6/195 (3%)
Query 5 DNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQ 64
D +R GR G+ DTR IL +AR+L A ++RAVAA+AGVD ALVHHYFGTK+
Sbjct 11 DAPAKRTGRRPGTPDTRGEILDAARQLLAERSPSGVTVRAVAARAGVDPALVHHYFGTKR 70
Query 65 QLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELG-AGLIATLRSLIS-G 122
LF AA+ +P DP +I+ I + PV E G ++ +W+ G +A LRS +S G
Sbjct 71 SLFTAALELPFDPRMIVRSILDGPVAERGERMTRTFFGVWEDPSGREPFLALLRSALSAG 130
Query 123 SDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPA 182
S GL F+++V+ ++ G R + S L+G+ + RY++ +EP AS P
Sbjct 131 SGAGLLAGFIQQVML----PLAEHEAGLDGRRVELAVSHLVGIAVLRYLIAVEPLASTPV 186
Query 183 EQIVQTIAPNLQRYL 197
E++V +AP++QRYL
Sbjct 187 EELVAAVAPSVQRYL 201
>gi|256379706|ref|YP_003103366.1| TetR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255924009|gb|ACU39520.1| transcriptional regulator, TetR family [Actinosynnema mirum DSM
43827]
Length=220
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 120/205 (59%), Gaps = 8/205 (3%)
Query 1 VAAPDNSRRRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYF 60
VA +R GR AG DTR +L +ARE+F G + ++RA+AA+AGVDAA+V+H+F
Sbjct 2 VAVDGGEPKRRGRRAGGEDTRGALLQAAREVFVERGYEGATVRAIAARAGVDAAMVNHWF 61
Query 61 GTKQQLFAAAI-HIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSL 119
G KQ LFA A+ +P+DP+ I+ I + P E LG +L L +WD+ G A +RS+
Sbjct 62 GGKQALFAKAVLQLPVDPVEIVRRIAQGPPELLGERLVRTFLGVWDATGGGAFSALVRSV 121
Query 120 ISGSDV--GLARSFLEEVV-TVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEP 176
V L F++ V+ V VD P ++R ASQ++G+ M RY++ EP
Sbjct 122 AGHEQVTHALHDLFIKTVLGQVMRAFDVDRP----ELRATLCASQMVGLGMTRYVLEFEP 177
Query 177 FASLPAEQIVQTIAPNLQRYLTGEL 201
AS E +V + P LQRYL+G++
Sbjct 178 LASADPEALVSAVGPTLQRYLSGDI 202
>gi|330469257|ref|YP_004407000.1| TetR family transcriptional regulator [Verrucosispora maris AB-18-032]
gi|328812228|gb|AEB46400.1| TetR family transcriptional regulator [Verrucosispora maris AB-18-032]
Length=196
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/194 (43%), Positives = 110/194 (57%), Gaps = 1/194 (0%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
RR GR G+ TRE IL +AR F G D ++IRA+AA AGVD ALVHHYFG+K QLF
Sbjct 3 RRTGRRPGNPATREAILDAARATFGQRGYDGSTIRAIAAAAGVDPALVHHYFGSKDQLFL 62
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG-L 127
AA+ P DP ++ + LG ++ L +WDS G IA LRS +S L
Sbjct 63 AAMQAPFDPREVLPAVLAGDRAGLGERIVRTFLSVWDSPAGTAGIAMLRSAVSNEWTARL 122
Query 128 ARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
R F+ V + VD P +R +ASQL+G+ + R+++R+EP A+ E +V
Sbjct 123 LREFVTIHVLRPILDHVDVDPAEVPLRGSLLASQLVGLAVMRHVIRLEPIATADPEVLVA 182
Query 188 TIAPNLQRYLTGEL 201
IAP + RYLT L
Sbjct 183 AIAPTIGRYLTAPL 196
>gi|296271359|ref|YP_003653991.1| TetR family transcriptional regulator [Thermobispora bispora
DSM 43833]
gi|296094146|gb|ADG90098.1| transcriptional regulator, TetR family [Thermobispora bispora
DSM 43833]
Length=205
Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/192 (42%), Positives = 115/192 (60%), Gaps = 6/192 (3%)
Query 10 RPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAA 69
RPG +DTR IL++AR FA G D +IR +A +AGVD ALVHHYFGTK +LFA
Sbjct 18 RPGGHPDGADTRTAILAAARRAFAEKGFDNATIRGIAREAGVDPALVHHYFGTKAELFAT 77
Query 70 AIHIPIDPMVIIGPIREAPVEELGYKLPSLLLP-IWDSELGAGLIATLRSLISGSDVGLA 128
A+ +P+DP + + P EE+G +L +L I + E ++ LRS +S V A
Sbjct 78 AMRLPVDPREVAATVLAGPREEVGERLVRCVLGLIAEPETEERIVGLLRSAMSNDQVLAA 137
Query 129 -RSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
F EVV E+ S + PP +R + SQ++G+V+ R+I+R+EP AS +++V
Sbjct 138 IHEFFSEVVAGEVASALGIPP----LRLEAAISQIVGIVLIRHILRVEPMASAQVDELVD 193
Query 188 TIAPNLQRYLTG 199
+AP +QRYL G
Sbjct 194 LLAPTIQRYLGG 205
>gi|256394697|ref|YP_003116261.1| TetR family transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256360923|gb|ACU74420.1| transcriptional regulator, TetR family [Catenulispora acidiphila
DSM 44928]
Length=196
Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/194 (39%), Positives = 121/194 (63%), Gaps = 5/194 (2%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
+RPGR GS+DTR IL +AR FA G ++ ++R +A AGVD+ALVHHYFG+K ++F
Sbjct 6 KRPGRRPGSADTRGEILDAARAEFASRGYEKATVRGIARAAGVDSALVHHYFGSKDRVFL 65
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDS-ELGAGLIATLRSLISGSDVG- 126
AA+ P+DP ++ + P +G +L L++ +WD + L+A +R++ S ++
Sbjct 66 AALEFPVDPAAVLEQVAGDPA-GIGERLARLVVGLWDVPQARERLLAVVRTVASNEEMAV 124
Query 127 LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIV 186
L R F + V L +R+ P + R + +Q++G+ MARY++ +EP ASL +E+++
Sbjct 125 LLRGFARPQLIVPLAARIGGP--DAEARVEMAMAQIIGLAMARYVIGVEPVASLGSEELI 182
Query 187 QTIAPNLQRYLTGE 200
+AP LQR L GE
Sbjct 183 ALLAPALQRLLVGE 196
>gi|271970306|ref|YP_003344502.1| TetR family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270513481|gb|ACZ91759.1| putative transcriptional regulator, TetR family [Streptosporangium
roseum DSM 43021]
Length=217
Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/215 (40%), Positives = 127/215 (60%), Gaps = 25/215 (11%)
Query 5 DNSRRRP--GRPAG---------------SSDTRERILSSARELFAHNGIDRTSIRAVAA 47
D++ RP GRPAG S+DTR +IL++ARE F+ G D+ +IR +A
Sbjct 7 DDAGERPASGRPAGERPESGRRRPGRRPGSADTRGQILAAARETFSEKGFDKATIRGIAR 66
Query 48 KAGVDAALVHHYFGTKQQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSE 107
+AGVD ALVHHYF +K+ +F AA+ +P++P +I I P EE+G +L +L + SE
Sbjct 67 QAGVDPALVHHYFASKEGMFVAAMELPVNPDEVIPMIMNGPREEIGERLTRFVLTMT-SE 125
Query 108 LGAG--LIATLRSLISGSD-VGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMG 164
GA ++A +R+ ++ V + R FL + +RV G IR + +QL G
Sbjct 126 AGARQPVLALVRTAMTNDRVVSMVREFLTHAIV----NRVAEGLGIPAIRMEVAFAQLFG 181
Query 165 VVMARYIVRIEPFASLPAEQIVQTIAPNLQRYLTG 199
VV+ RY+V++EP AS E++V+ +AP +QRYL G
Sbjct 182 VVLMRYVVKLEPLASAEIEELVELLAPTIQRYLDG 216
>gi|300784198|ref|YP_003764489.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299793712|gb|ADJ44087.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340525617|gb|AEK40822.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=208
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/190 (39%), Positives = 114/190 (60%), Gaps = 6/190 (3%)
Query 14 PAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAI-H 72
PAG DTR ++ +AR +FA NG D ++RA+A +A VDAA+V+H+FG+K+ LFA A+
Sbjct 22 PAGQ-DTRTALIEAARSVFAENGYDGATVRAIATRADVDAAMVNHWFGSKEGLFAQAVLE 80
Query 73 IPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG-LARSF 131
+P DP+ + +R P +ELG ++ + WDS G +A +RS+ G + R F
Sbjct 81 LPFDPLELQKILRHGPDDELGERIVRTFITRWDSAGGGQFVALIRSVTGHEQAGHVLRDF 140
Query 132 LEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAP 191
+ + + S + +R ASQ++G+ M RY+ + EP A+ E +V+ IAP
Sbjct 141 FQRFFSALITSMGSDRTA---LRMNLCASQMVGLGMVRYVAKFEPLATEDVEVLVRAIAP 197
Query 192 NLQRYLTGEL 201
NLQRYLTGE+
Sbjct 198 NLQRYLTGEI 207
>gi|159038944|ref|YP_001538197.1| TetR family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917779|gb|ABV99206.1| transcriptional regulator, TetR family [Salinispora arenicola
CNS-205]
Length=198
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/194 (45%), Positives = 113/194 (59%), Gaps = 1/194 (0%)
Query 9 RRPGRPAGSSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFA 68
RR GR G+ DTRE IL++AR FA G D SIRA+AA AGVD ALVHHYFG+K +LF
Sbjct 3 RRTGRRPGNPDTREAILAAARSTFAERGFDGASIRAIAAAAGVDPALVHHYFGSKDKLFL 62
Query 69 AAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELGAGLIATLRSLISGSDVG-L 127
AA++ P DP ++ + +G +L L +WDS G +A LRS +S L
Sbjct 63 AAMNAPADPAEVVPTVLAGDPGRIGERLIRAFLSVWDSPAGTPALALLRSAVSNEWTARL 122
Query 128 ARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQ 187
R FL V + +D P +R VASQL G+ MARY++R+EP A+ E +V
Sbjct 123 LREFLTTQVLRRVLDHLDVDPTESPLRGSLVASQLFGLAMARYVLRLEPVATAAPETLVG 182
Query 188 TIAPNLQRYLTGEL 201
+ P +QRYLT L
Sbjct 183 AVGPTVQRYLTAPL 196
>gi|328883252|emb|CCA56491.1| Transcriptional regulator, TetR family [Streptomyces venezuelae
ATCC 10712]
Length=203
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/197 (39%), Positives = 118/197 (60%), Gaps = 9/197 (4%)
Query 9 RRPGRPAGSSD-----TRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTK 63
RR GRP+ + + RERIL +AR FA G D+TS+R + AGVD ALVHHYFGTK
Sbjct 7 RRRGRPSRTEEETGPGARERILEAARAQFAERGYDKTSVRGIGKAAGVDPALVHHYFGTK 66
Query 64 QQLFAAAIHIPIDPMVIIGPIREAPVEELGYKLPSLLLPIWDSELG-AGLIATLRS-LIS 121
++FAAAI + +P ++ I P + +G +L + +W++ A L+A +RS L
Sbjct 67 DEVFAAAIEVSFEPAAVVPAIVGGPRDSIGERLARFFIGVWENPASRAPLLAIVRSALTH 126
Query 122 GSDVGLARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLP 181
+ + R+F+ + + + +D P K R + AS ++G+ + RY++++EP AS
Sbjct 127 EAAAKVLRTFVLRRLLERIAAELDVP--DPKFRAELAASHMIGIAILRYVIQVEPMASAD 184
Query 182 AEQIVQTIAPNLQRYLT 198
E+IV+ +AP LQRYLT
Sbjct 185 PERIVEMVAPTLQRYLT 201
>gi|21221776|ref|NP_627555.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
gi|289770941|ref|ZP_06530319.1| transcriptional regulator [Streptomyces lividans TK24]
gi|4803692|emb|CAB42672.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)]
gi|289701140|gb|EFD68569.1| transcriptional regulator [Streptomyces lividans TK24]
Length=204
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/196 (41%), Positives = 122/196 (63%), Gaps = 7/196 (3%)
Query 9 RRPGRPAG--SSDTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQL 66
RR GRP G S DTR+RIL++ARE F+ G ++TS+R +A AGVD ALVHHYFGTK+Q+
Sbjct 10 RRRGRPPGTESGDTRDRILTTAREEFSERGYEKTSVRGIAKAAGVDPALVHHYFGTKEQV 69
Query 67 FAAAIHIPIDPMVII-GPIREAPVEELGYKLPSLLLPIWDSELG-AGLIATLRSLISGSD 124
F AAI + P + I +AP++E+G +L +L +W++ L+A +RS ++
Sbjct 70 FEAAIEVAFAPALRAPDAIGDAPLDEVGERLTRFILGLWENPASRTPLLAIVRSAVNNET 129
Query 125 VG-LARSFLEEVVTVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAE 183
+ R + V + +++ P ++R + A+QL+G M RY++++EP AS E
Sbjct 130 AATVFRRLIATQVLRRVAAQLHLP--DAELRVELAAAQLVGCAMLRYVIKVEPLASADPE 187
Query 184 QIVQTIAPNLQRYLTG 199
QIV +AP +Q +LTG
Sbjct 188 QIVARLAPVVQGHLTG 203
>gi|182437927|ref|YP_001825646.1| TetR family transcriptional regulator [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178466443|dbj|BAG20963.1| putative TetR-family transcriptional regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
Length=208
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/181 (42%), Positives = 108/181 (60%), Gaps = 4/181 (2%)
Query 19 DTRERILSSARELFAHNGIDRTSIRAVAAKAGVDAALVHHYFGTKQQLFAAAIHIPIDPM 78
D R RIL++AR FA G D+TSIR +A AGVDAALVHHYFGTK ++FAAA+ + +P
Sbjct 27 DARTRILAAARTEFAERGYDKTSIRGIARAAGVDAALVHHYFGTKDEVFAAAVEVTFEPA 86
Query 79 VIIGPIREAPVEELGYKLPSLLLPIW-DSELGAGLIATLRS-LISGSDVGLARSFLEEVV 136
+++ + P E LG +L L +W D + L+A LRS L + + R F+ +
Sbjct 87 LVVHTVLGGPPEGLGERLARFFLSVWEDPATRSPLLAILRSALTHEAAAKVLREFVLRRL 146
Query 137 TVELGSRVDNPPGTGKIRTQFVASQLMGVVMARYIVRIEPFASLPAEQIVQTIAPNLQRY 196
+ + +D P T R + AS ++G+ RY++R EP AS E+IV +AP LQRY
Sbjct 147 LERIAAELDVPDAT--FRAELAASHMIGIATLRYMIRAEPLASADPEEIVAMVAPALQRY 204
Query 197 L 197
L
Sbjct 205 L 205
Lambda K H
0.320 0.137 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 236380426956
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40