BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1701 Length=311 Score E Sequences producing significant alignments: (Bits) Value gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase ... 607 1e-171 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tubercu... 605 3e-171 gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [My... 558 3e-157 gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Myco... 558 4e-157 gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase... 556 2e-156 gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombina... 546 1e-153 gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase... 539 2e-151 gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombin... 538 6e-151 gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase ... 529 3e-148 gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase... 528 3e-148 gi|342860721|ref|ZP_08717371.1| site-specific tyrosine recombina... 523 1e-146 gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase... 522 2e-146 gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subun... 517 7e-145 gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombin... 517 8e-145 gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] 506 2e-141 gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase ... 506 3e-141 gi|333990497|ref|YP_004523111.1| site-specific tyrosine recombin... 505 3e-141 gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase... 503 1e-140 gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombin... 460 1e-127 gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhod... 442 2e-122 gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhod... 442 3e-122 gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase... 427 8e-118 gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodo... 423 2e-116 gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhod... 422 3e-116 gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsuk... 411 7e-113 gi|333919201|ref|YP_004492782.1| Tyrosine recombinase XerD subun... 409 4e-112 gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase ... 400 2e-109 gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharo... 382 3e-104 gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombina... 382 3e-104 gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amy... 375 4e-102 gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subun... 375 7e-102 gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardi... 370 1e-100 gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gord... 367 1e-99 gi|343928405|ref|ZP_08767853.1| tyrosine recombinase XerC [Gordo... 367 1e-99 gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Strep... 366 2e-99 gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseu... 365 4e-99 gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Ther... 365 5e-99 gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Krib... 364 9e-99 gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geod... 363 2e-98 gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombina... 357 1e-96 gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase ... 353 1e-95 gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cell... 352 4e-95 gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocar... 349 4e-94 gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subun... 347 2e-93 gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidoth... 347 2e-93 gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segni... 345 5e-93 gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrob... 344 1e-92 gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segn... 344 1e-92 gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Stre... 343 2e-92 gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arth... 343 2e-92 >gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Rv] gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=311 Score = 607 bits (1564), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 311/311 (100%), Positives = 311/311 (100%), Gaps = 0/311 (0%) Query 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL Sbjct 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 Query 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS Sbjct 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 Query 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL Sbjct 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 Query 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL Sbjct 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 Query 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR Sbjct 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 Query 301 EVWAGAHPRAR 311 EVWAGAHPRAR Sbjct 301 EVWAGAHPRAR 311 >gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A] Length=311 Score = 605 bits (1560), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 310/311 (99%), Positives = 310/311 (99%), Gaps = 0/311 (0%) Query 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL Sbjct 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 Query 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGL ELDVARAVRPPTPSRRLPKS Sbjct 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKS 120 Query 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL Sbjct 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 Query 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL Sbjct 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 Query 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR Sbjct 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 Query 301 EVWAGAHPRAR 311 EVWAGAHPRAR Sbjct 301 EVWAGAHPRAR 311 >gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M] gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M] Length=313 Score = 558 bits (1439), Expect = 3e-157, Method: Compositional matrix adjust. Identities = 286/312 (92%), Positives = 297/312 (96%), Gaps = 2/312 (0%) Query 1 MKTLAL--QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M TL L QLQGYLDHL IERGVAANTLSSYRRDLRRYSKHLE+RGITDLAKVGE DVSE Sbjct 1 MSTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDP+SG LSAVSAARALIAVRGLHRFAAAEGLA LDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLTIDEVL+LLEGAGGD P+DGPLTLRNRA+LELLYSTG+RISEAVGLD+DDIDT AR+ Sbjct 121 KSLTIDEVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQART 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQ 238 VLL+GKGGKQRLVPVGRPAV ALDAYLVRGRP+LARRGRGT AIFLNARGGRLSRQSAWQ Sbjct 181 VLLQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQ 240 Query 239 VLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 298 VLQDAAERAGIT+GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA Sbjct 241 VLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 300 Query 299 LREVWAGAHPRA 310 LREVWAGAHPRA Sbjct 301 LREVWAGAHPRA 312 >gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=313 Score = 558 bits (1438), Expect = 4e-157, Method: Compositional matrix adjust. Identities = 286/313 (92%), Positives = 299/313 (96%), Gaps = 2/313 (0%) Query 1 MKTLAL--QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M T AL QLQGYLDHLTIERGVAANTLSSYRRDLRRY+KHL +RGI DLAKVGE DVSE Sbjct 1 MTTAALDTQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGIHDLAKVGEDDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDPD+GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPDAGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLTID+VL+LLEGAGGD SDGPLTLRNRA+LELLYSTGARISEAVGLD+DD+D+ ARS Sbjct 121 KSLTIDQVLALLEGAGGDSASDGPLTLRNRALLELLYSTGARISEAVGLDVDDVDSRARS 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQ 238 VLLRGKGGKQRLVPVGRPAV ALDAYLVRGRPDLARRGRGT AIFLN RGGRLSRQSAWQ Sbjct 181 VLLRGKGGKQRLVPVGRPAVQALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQ 240 Query 239 VLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 298 VLQDAAERAGI++GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT+VTVHA Sbjct 241 VLQDAAERAGISSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHA 300 Query 299 LREVWAGAHPRAR 311 LREVWAGAHPRA+ Sbjct 301 LREVWAGAHPRAQ 313 >gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans Agy99] gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99] Length=313 Score = 556 bits (1432), Expect = 2e-156, Method: Compositional matrix adjust. Identities = 285/312 (92%), Positives = 296/312 (95%), Gaps = 2/312 (0%) Query 1 MKTLAL--QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M TL L QLQGYLDHL IERGVAANTLSSYRRDLRRYSKHLE+RGITDLAKVGE DVSE Sbjct 1 MSTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDP+SG LSAVSAARALIAVRGLHRFAAAEGLA LDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLTIDEVL+LLEGAGGD P+DGPLTLRNRA+LELLYSTG+RISEAVGLD+DDIDT AR+ Sbjct 121 KSLTIDEVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQART 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQ 238 VLL+GKGGKQRLVPVGRPAV ALDAYLVRGRP+LARRGRGT AIFLNARGGRLSRQSAWQ Sbjct 181 VLLQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQ 240 Query 239 VLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 298 VLQDAAERA IT+GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA Sbjct 241 VLQDAAERADITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 300 Query 299 LREVWAGAHPRA 310 LREVWAGAHPRA Sbjct 301 LREVWAGAHPRA 312 >gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii ATCC 12478] Length=313 Score = 546 bits (1408), Expect = 1e-153, Method: Compositional matrix adjust. Identities = 286/308 (93%), Positives = 298/308 (97%), Gaps = 0/308 (0%) Query 3 TLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVA 62 TL QLQGYLDHL IERGVAANTLSSYRRDLRRY+KHLE+RGITDLA VGE DVS+FLVA Sbjct 5 TLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYTKHLEDRGITDLAAVGEDDVSDFLVA 64 Query 63 LRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLT 122 LRRGDPDSG AL+AVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTP RRLPKSLT Sbjct 65 LRRGDPDSGATALAAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLT 124 Query 123 IDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182 +D+VL+LLEGAGGD P+DGPLTLRNRA+LELLYSTG+RISEAVGLD+DD+DTHARSVLLR Sbjct 125 VDQVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDVDTHARSVLLR 184 Query 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD Sbjct 185 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 244 Query 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREV 302 AAE AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREV Sbjct 245 AAECAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREV 304 Query 303 WAGAHPRA 310 WAGAHPRA Sbjct 305 WAGAHPRA 312 >gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS] gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS] gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS] gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS] Length=318 Score = 539 bits (1388), Expect = 2e-151, Method: Compositional matrix adjust. Identities = 271/305 (89%), Positives = 289/305 (95%), Gaps = 0/305 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 QLQGYLDHLTIERGVAANTLSSYRRDLRRYS+HL RG+ DLAKV E DVS+FLVALRRG Sbjct 14 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTESDVSDFLVALRRG 73 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DPD+G ALSAVSAARALIAVRGLHRFA AEGL ++DVARAV+PPTP RRLPKSL+IDEV Sbjct 74 DPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRLPKSLSIDEV 133 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 L+LL+GAGGD +DGPLTLRNRA+LELLYSTGARISEAVGLD+DD+DTHARSVLLRGKGG Sbjct 134 LALLDGAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHARSVLLRGKGG 193 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAER 246 KQRLVP+GRPAV ALDAYLVRGRPDLARRGRGT AIFLNARGGRLSRQSAWQVLQDAAER Sbjct 194 KQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAER 253 Query 247 AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGA 306 AGIT+ VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYT+VTVHALREVWAGA Sbjct 254 AGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGA 313 Query 307 HPRAR 311 HPRAR Sbjct 314 HPRAR 318 >gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS] gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS] Length=318 Score = 538 bits (1385), Expect = 6e-151, Method: Compositional matrix adjust. Identities = 270/305 (89%), Positives = 289/305 (95%), Gaps = 0/305 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 QLQGYLDHLTIERGVAANTLSSYRRDLRRYS+HL RG+ DLAKV E DVS+FLVALRRG Sbjct 14 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTESDVSDFLVALRRG 73 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DPD+G ALSAVSAARALIAVRGLHRFA AEGL ++DVARAV+PPTP RRLPKSL+IDEV Sbjct 74 DPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRLPKSLSIDEV 133 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 L+LL+GAGGD +DGPLTLRNRA+LELLYSTGARISEAVGLD+DD+DTHARSVLLRGKGG Sbjct 134 LALLDGAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHARSVLLRGKGG 193 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAER 246 KQRLVP+GRPAV ALDAYLVRGRPDLARRGRGT AIFLNARGGRLSRQSAWQVLQDAA+R Sbjct 194 KQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAADR 253 Query 247 AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGA 306 AGIT+ VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYT+VTVHALREVWAGA Sbjct 254 AGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGA 313 Query 307 HPRAR 311 HPRAR Sbjct 314 HPRAR 318 >gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336457860|gb|EGO36854.1| tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis S397] Length=313 Score = 529 bits (1362), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 281/313 (90%), Positives = 297/313 (95%), Gaps = 2/313 (0%) Query 1 MKTLAL--QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M T+AL QLQGYLDHLTIERGVAANTLSSYRRDLRRY+KHL +RGI+DLAKVGE DVSE Sbjct 1 MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDPD+G AALSAVSAARALIAVRGLHRF AAEGLAELDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLTID+VL+LLE AGG+ P+DGPLTLRNRA+LELLYSTGARISEAVGLD+DD+DT ARS Sbjct 121 KSLTIDQVLALLEAAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARS 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQ 238 VLLRGKGGKQRLVP+GRPAV ALDAYLVRGR +LARRGRGT AIFLN RGGRLSRQSAWQ Sbjct 181 VLLRGKGGKQRLVPIGRPAVAALDAYLVRGRWELARRGRGTPAIFLNVRGGRLSRQSAWQ 240 Query 239 VLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 298 VLQDAAERAGIT+GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT+VTVHA Sbjct 241 VLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHA 300 Query 299 LREVWAGAHPRAR 311 LREVWA AHPRAR Sbjct 301 LREVWAEAHPRAR 313 >gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104] gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. avium ATCC 25291] gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104] Length=313 Score = 528 bits (1361), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 280/313 (90%), Positives = 297/313 (95%), Gaps = 2/313 (0%) Query 1 MKTLAL--QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M T+AL QLQGYLDHLTIERGVAANTLSSYRRDLRRY+KHL +RGI+DLAKVGE DVS+ Sbjct 1 MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSD 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDPD+G AALSAVSAARALIAVRGLHRF AAEGLAELDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLTID+VL+LLE AGG+ P+DGPLTLRNRA+LELLYSTGARISEAVGLD+DD+DT ARS Sbjct 121 KSLTIDQVLALLEAAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARS 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQ 238 VLLRGKGGKQRLVP+GRPAV ALDAYLVRGR +LARRGRGT AIFLN RGGRLSRQSAWQ Sbjct 181 VLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSELARRGRGTPAIFLNVRGGRLSRQSAWQ 240 Query 239 VLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 298 VLQDAAERAGIT+GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT+VTVHA Sbjct 241 VLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHA 300 Query 299 LREVWAGAHPRAR 311 LREVWA AHPRAR Sbjct 301 LREVWAEAHPRAR 313 >gi|342860721|ref|ZP_08717371.1| site-specific tyrosine recombinase XerD [Mycobacterium colombiense CECT 3035] gi|342131745|gb|EGT85002.1| site-specific tyrosine recombinase XerD [Mycobacterium colombiense CECT 3035] Length=313 Score = 523 bits (1347), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 278/313 (89%), Positives = 296/313 (95%), Gaps = 2/313 (0%) Query 1 MKTLAL--QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M T AL QLQGYLDHLTIERGVAANTLSSY RDLRRY++HL +RGI DLAKVGE+DVSE Sbjct 1 MTTAALDTQLQGYLDHLTIERGVAANTLSSYGRDLRRYTRHLSDRGIHDLAKVGENDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDPD+G AALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPDTGVAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLTID+VL+LLEGAGG+ P+DGPLTLRNRA+LELLYSTGARISEAVGLD+DD+DTHARS Sbjct 121 KSLTIDQVLALLEGAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTHARS 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQ 238 VLLRGKGGKQRLVP+GRPAV ALD+YLVRGR +LARRGRGT IFLN RGGRLSRQSAWQ Sbjct 181 VLLRGKGGKQRLVPIGRPAVAALDSYLVRGRAELARRGRGTPGIFLNVRGGRLSRQSAWQ 240 Query 239 VLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA 298 VLQDAA RAGIT+GVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT+VTVHA Sbjct 241 VLQDAAARAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHA 300 Query 299 LREVWAGAHPRAR 311 LREVWA AHPRA+ Sbjct 301 LREVWAEAHPRAQ 313 >gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii PYR-1] gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1] Length=317 Score = 522 bits (1345), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 262/305 (86%), Positives = 282/305 (93%), Gaps = 0/305 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 Q QGYLDHL IERGVAANTLSSYRRDLRRY++HL RG+TDLA V E DVSEFLV+LRRG Sbjct 13 QFQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLASRGVTDLAGVAEADVSEFLVSLRRG 72 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DPD+G LSAVSAARA+IAVRGLHRFAAAEG+ +DVAR V+PPTP RRLPKSL+IDEV Sbjct 73 DPDNGVVPLSAVSAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPKSLSIDEV 132 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 L+LLE AGGD +DGPLTLRNRA+LELLYSTGARISEAVGLD+DD+DT ARSVLLRGKGG Sbjct 133 LALLEAAGGDGEADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSVLLRGKGG 192 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAER 246 KQRL+P+GRPAV ALD YLVRGRPDLARRGRGT AIFLNARGGRLSRQSAWQVLQDAAER Sbjct 193 KQRLIPIGRPAVSALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAER 252 Query 247 AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGA 306 AGITA VSPH+LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYT+VTV ALREVWAGA Sbjct 253 AGITATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTALREVWAGA 312 Query 307 HPRAR 311 HPRAR Sbjct 313 HPRAR 317 >gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] Length=320 Score = 517 bits (1332), Expect = 7e-145, Method: Compositional matrix adjust. Identities = 261/305 (86%), Positives = 282/305 (93%), Gaps = 0/305 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 QLQGYLDHL IERGVAANTLSSYRRDLRRY++HL+ RG+ DLA V E DVSEFLVALR G Sbjct 16 QLQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLG 75 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DPD G LSAVSAARALIAVRGLHRFAAAEG+A +DVAR V+PPTPSRRLPKSL+IDEV Sbjct 76 DPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEV 135 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 L+LLE AGGD +D PLTLRNRA+LELLYSTGARISEAVGLD+DD+DT ARSVLLRGKGG Sbjct 136 LALLEAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGG 195 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAER 246 KQRL+P+GRPAV AL+ YLVRGRPDLARRGRGT AIFLNARGGRLSRQSAWQVLQDAA R Sbjct 196 KQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGR 255 Query 247 AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGA 306 AG+TA VSPH+LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYT+VTV+ALREVWAGA Sbjct 256 AGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGA 315 Query 307 HPRAR 311 HPRAR Sbjct 316 HPRAR 320 >gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] Length=314 Score = 517 bits (1332), Expect = 8e-145, Method: Compositional matrix adjust. Identities = 261/305 (86%), Positives = 282/305 (93%), Gaps = 0/305 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 QLQGYLDHL IERGVAANTLSSYRRDLRRY++HL+ RG+ DLA V E DVSEFLVALR G Sbjct 10 QLQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLG 69 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DPD G LSAVSAARALIAVRGLHRFAAAEG+A +DVAR V+PPTPSRRLPKSL+IDEV Sbjct 70 DPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEV 129 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 L+LLE AGGD +D PLTLRNRA+LELLYSTGARISEAVGLD+DD+DT ARSVLLRGKGG Sbjct 130 LALLEAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGG 189 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAER 246 KQRL+P+GRPAV AL+ YLVRGRPDLARRGRGT AIFLNARGGRLSRQSAWQVLQDAA R Sbjct 190 KQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGR 249 Query 247 AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGA 306 AG+TA VSPH+LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYT+VTV+ALREVWAGA Sbjct 250 AGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGA 309 Query 307 HPRAR 311 HPRAR Sbjct 310 HPRAR 314 >gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] Length=316 Score = 506 bits (1302), Expect = 2e-141, Method: Compositional matrix adjust. Identities = 270/316 (86%), Positives = 288/316 (92%), Gaps = 5/316 (1%) Query 1 MKTLALQ--LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M T ALQ LQGYLD+L IER +AANTLSSYRRDL RYSKHL +RGI DLAKVGEHDVSE Sbjct 1 MTTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDPDSG AALSAVSAARALIAVRGLHRFA AEGL +LDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLT+DEVL+LLE GG+ +DGPL LRNRA+LELLYSTG+RISEAVGLD+DD+DT AR+ Sbjct 121 KSLTVDEVLALLESVGGESGADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQART 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRG---TAAIFLNARGGRLSRQS 235 VLL+GKGGKQRLVPVGRPAV ALDAYLVRGR DLARRG G T AIFLNARGGRLSRQS Sbjct 181 VLLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQS 240 Query 236 AWQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVT 295 AWQVLQDAAE AGIT+GVSPHMLRHSFATHLLEGGAD+RVVQEL+GHASVTTTQIYTLVT Sbjct 241 AWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVT 300 Query 296 VHALREVWAGAHPRAR 311 V ALREVWAGAHPRA+ Sbjct 301 VQALREVWAGAHPRAK 316 >gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN] gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae Br4923] gi|34222781|sp|Q49890.2|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae] gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae] gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923] Length=316 Score = 506 bits (1302), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 270/316 (86%), Positives = 288/316 (92%), Gaps = 5/316 (1%) Query 1 MKTLALQ--LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSE 58 M T ALQ LQGYLD+L IER +AANTLSSYRRDL RYSKHL +RGI DLAKVGEHDVSE Sbjct 1 MTTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSE 60 Query 59 FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118 FLVALRRGDPDSG AALSAVSAARALIAVRGLHRFA AEGL +LDVARAVRPPTP RRLP Sbjct 61 FLVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLP 120 Query 119 KSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS 178 KSLT+DEVL+LLE GG+ +DGPL LRNRA+LELLYSTG+RISEAVGLD+DD+DT AR+ Sbjct 121 KSLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQART 180 Query 179 VLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRG---TAAIFLNARGGRLSRQS 235 VLL+GKGGKQRLVPVGRPAV ALDAYLVRGR DLARRG G T AIFLNARGGRLSRQS Sbjct 181 VLLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQS 240 Query 236 AWQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVT 295 AWQVLQDAAE AGIT+GVSPHMLRHSFATHLLEGGAD+RVVQEL+GHASVTTTQIYTLVT Sbjct 241 AWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVT 300 Query 296 VHALREVWAGAHPRAR 311 V ALREVWAGAHPRA+ Sbjct 301 VQALREVWAGAHPRAK 316 >gi|333990497|ref|YP_004523111.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JDM601] gi|333486465|gb|AEF35857.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JDM601] Length=318 Score = 505 bits (1301), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 264/308 (86%), Positives = 286/308 (93%), Gaps = 0/308 (0%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 L+ QLQGYLDHLT+ERGVAANTLSSYRRDLRRYS+HL RG+ DLA+ GE DV++FLVAL Sbjct 11 LSGQLQGYLDHLTVERGVAANTLSSYRRDLRRYSEHLLARGVDDLARAGESDVTDFLVAL 70 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 RRGDP++G ALSAVSA RALIAVRGLHRFAAAEG+A +DVAR V+PPTP RRLPKSLTI Sbjct 71 RRGDPENGIPALSAVSAGRALIAVRGLHRFAAAEGMAPMDVARGVKPPTPGRRLPKSLTI 130 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 DEV +LL GAGG+ SDGPLTLRNRA+LE+LYSTG+RISEAVGLDLDD+D RSVLLRG Sbjct 131 DEVSALLAGAGGESVSDGPLTLRNRALLEMLYSTGSRISEAVGLDLDDVDVSDRSVLLRG 190 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGGKQRLVPVGRPAV ALDAYLVRGRPDLARRGRGTAA+FLNARGGRLSRQSAWQVLQDA Sbjct 191 KGGKQRLVPVGRPAVAALDAYLVRGRPDLARRGRGTAAVFLNARGGRLSRQSAWQVLQDA 250 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 AERAGITA VSPH LRHSFATHLL+GGADVRVVQELLGHASV+TTQIYTLVTV+ALREVW Sbjct 251 AERAGITAKVSPHTLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVNALREVW 310 Query 304 AGAHPRAR 311 AGAHPRAR Sbjct 311 AGAHPRAR 318 >gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] Length=318 Score = 503 bits (1295), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 263/305 (87%), Positives = 285/305 (94%), Gaps = 0/305 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 Q+QGYLDHLTIERGVAANTLSSYRRDLRRY++HL +RGI DLA+V E DVS+FLVALRRG Sbjct 14 QVQGYLDHLTIERGVAANTLSSYRRDLRRYAEHLRQRGIDDLARVAESDVSDFLVALRRG 73 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DPD+G ALSAVSAARA++AVRGLHRFAAAEGL E DVARAV+PPTPSRRLPKSLT+DEV Sbjct 74 DPDAGVTALSAVSAARAVVAVRGLHRFAAAEGLTENDVARAVKPPTPSRRLPKSLTLDEV 133 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 L+LLE AGGD +D PLTLRNRA+LELLYSTGARISEAVGLD+DD+DT ARSVLL GKGG Sbjct 134 LALLEAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLHGKGG 193 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAER 246 KQRLVP+GRPAV ALDAYLVRGRPDLARRGRGT AIFLNARGGRLSRQSAWQVLQD+AER Sbjct 194 KQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDSAER 253 Query 247 AGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGA 306 AGI + VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYT+VTVH LREVWAGA Sbjct 254 AGIASAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHTLREVWAGA 313 Query 307 HPRAR 311 HPRA+ Sbjct 314 HPRAQ 318 >gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus ATCC 19977] gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus] Length=315 Score = 460 bits (1183), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 247/306 (81%), Positives = 268/306 (88%), Gaps = 2/306 (0%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 ++Q YLDHL +ERGVAANTLSSYRRDLRRY +HL +R I LA+V E DVS+F+V LRRG Sbjct 11 EIQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLADRKIDRLAEVCETDVSDFVVTLRRG 70 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 DP +G LSA SAARALIAVRGLHRFAA EGLA DVARAV+PPTP+RRLPKSLT+++V Sbjct 71 DPANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSLTVEQV 130 Query 127 LSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGG 186 +LL AGG SDGPL LRNRA+LELLYSTGARISEAVGLD+DD+D ARSVLL GKGG Sbjct 131 EALLNAAGGGG-SDGPLDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVLLWGKGG 189 Query 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGR-GTAAIFLNARGGRLSRQSAWQVLQDAAE 245 KQRLVPVGRPAV AL AYLVRGRPDLARRGR G A+FLN+RGGRLSRQSAWQVL DAAE Sbjct 190 KQRLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQVLADAAE 249 Query 246 RAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAG 305 RA I+A VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTV ALREVWAG Sbjct 250 RAKISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSALREVWAG 309 Query 306 AHPRAR 311 AHPRAR Sbjct 310 AHPRAR 315 >gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S] gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S] Length=309 Score = 442 bits (1138), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 228/311 (74%), Positives = 258/311 (83%), Gaps = 2/311 (0%) Query 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 M L + YLDHL +ERG A NTL+SYRRDL RY++ LE RG D+ V E DVSEF+ Sbjct 1 MTELGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDIRSVTETDVSEFV 60 Query 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 VALR+GDP G AL+ SAARALIAVRGLHRFAAAEG+ DVARAV+PPTP RRLPKS Sbjct 61 VALRKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKS 120 Query 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 L +D+VL++LE +GGD +D P TLR+RA+LELLYSTGARISEAVGLD+DD+DT +RSVL Sbjct 121 LPLDDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVL 180 Query 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 LRGKGGK+R+VPVGRPA+ A+D YLVRGRP L+ RG A+FLN RGGRLSRQSAWQVL Sbjct 181 LRGKGGKERVVPVGRPAITAIDNYLVRGRPALSV--RGGPALFLNVRGGRLSRQSAWQVL 238 Query 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 AAE+AGI VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLVTV ALR Sbjct 239 HTAAEKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALR 298 Query 301 EVWAGAHPRAR 311 EVWA AHPRAR Sbjct 299 EVWAQAHPRAR 309 >gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length=309 Score = 442 bits (1138), Expect = 3e-122, Method: Compositional matrix adjust. Identities = 228/311 (74%), Positives = 258/311 (83%), Gaps = 2/311 (0%) Query 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 M L + YLDHL +ERG A NTL+SYRRDL RY++ LE RG D+ V E DVSEF+ Sbjct 1 MTELGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDVRSVTETDVSEFV 60 Query 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 VALR+GDP G AL+ SAARALIAVRGLHRFAAAEG+ DVARAV+PPTP RRLPKS Sbjct 61 VALRKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKS 120 Query 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 L +D+VL++LE +GGD +D P TLR+RA+LELLYSTGARISEAVGLD+DD+DT +RSVL Sbjct 121 LPLDDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVL 180 Query 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 LRGKGGK+R+VPVGRPA+ A+D YLVRGRP L+ RG A+FLN RGGRLSRQSAWQVL Sbjct 181 LRGKGGKERVVPVGRPAITAIDNYLVRGRPALSV--RGGPALFLNVRGGRLSRQSAWQVL 238 Query 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 AAE+AGI VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLVTV ALR Sbjct 239 HTAAEKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALR 298 Query 301 EVWAGAHPRAR 311 EVWA AHPRAR Sbjct 299 EVWAQAHPRAR 309 >gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1] gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1] Length=308 Score = 427 bits (1099), Expect = 8e-118, Method: Compositional matrix adjust. Identities = 224/309 (73%), Positives = 262/309 (85%), Gaps = 2/309 (0%) Query 3 TLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVA 62 +A Q+ YLDHL +ERG A NTL SYRRDL RY++ L +R +TD+ ++ E DVS+F++A Sbjct 2 VIARQVDSYLDHLAVERGAARNTLGSYRRDLERYTQFLADRELTDIDRIREQDVSDFVIA 61 Query 63 LRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLT 122 LR GDP+ L+A SAARALIAVRG HRFAAAEG+ +DVAR VRPP+P++RLPKSL Sbjct 62 LRSGDPNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSLP 121 Query 123 IDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182 ++EVL+LLE GG P+DGP +R+RA+LELLYSTGARISEAVGLD+DD+DT RSVLLR Sbjct 122 VNEVLALLEAVGGSGPADGPRAVRDRALLELLYSTGARISEAVGLDVDDVDTETRSVLLR 181 Query 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242 GKGGKQR+VPVGRPAV +LDAYL+RGRP LA RGT A+FLN RGGRLSRQSAW+VLQ Sbjct 182 GKGGKQRVVPVGRPAVESLDAYLIRGRPALA--SRGTPALFLNVRGGRLSRQSAWKVLQA 239 Query 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREV 302 AA+ AGI++ VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLVTV ALREV Sbjct 240 AADAAGISSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREV 299 Query 303 WAGAHPRAR 311 WAGAHPRAR Sbjct 300 WAGAHPRAR 308 >gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] Length=307 Score = 423 bits (1088), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 220/308 (72%), Positives = 256/308 (84%), Gaps = 2/308 (0%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 LA Q+ YLDHL +ERG A NTL SYRRDL RY+++L RGI D+A V E+DV+EF+ L Sbjct 2 LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLNGRGIDDVAGVTENDVTEFVTHL 61 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R GD D+G L+A SAAR LIAVRG H+F+AAEGL +DVAR V+PPTP R+LPK+L + Sbjct 62 RLGDKDAGVVPLAASSAARTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGRKLPKALPL 121 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 D+V++LL+ +GG DGP LR+RA+LELLYSTGARI+EA+ LD+DDIDT RSVLL+G Sbjct 122 DDVIALLDASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKG 181 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGGKQR+VPVGRPA+ A+DAYLVRGRP LA RG A+FLNARGGRLSRQSAWQ+LQDA Sbjct 182 KGGKQRIVPVGRPAIAAVDAYLVRGRPSLA--TRGVPALFLNARGGRLSRQSAWQILQDA 239 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 A AGI A VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLVTV A+REVW Sbjct 240 AASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTAMREVW 299 Query 304 AGAHPRAR 311 A AHPRAR Sbjct 300 AQAHPRAR 307 >gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] Length=307 Score = 422 bits (1085), Expect = 3e-116, Method: Compositional matrix adjust. Identities = 221/308 (72%), Positives = 257/308 (84%), Gaps = 2/308 (0%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 LA Q+ YLDHL +ERG A NTL SYRRDL RY+++L+ RGI D+A V E+DV+EF+ L Sbjct 2 LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLDGRGIDDVAGVTENDVTEFVTHL 61 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R GD D+G L+A SAAR LIAVRG H+F+AAEGL +DVAR V+PPTP R+LPK+L + Sbjct 62 RLGDKDAGVLPLAASSAARTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGRKLPKALPL 121 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 D+V++LL+ +GG DGP LR+RA+LELLYSTGARI+EA+ LD+DDIDT RSVLL+G Sbjct 122 DDVIALLDASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKG 181 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGGKQR+VPVGRPA+ A+DAYLVRGRP LA RG A+FLNARGGRLSRQSAWQ+LQDA Sbjct 182 KGGKQRIVPVGRPAIAAVDAYLVRGRPSLAT--RGVPALFLNARGGRLSRQSAWQILQDA 239 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 A AGI A VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLVTV ALREVW Sbjct 240 AASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTALREVW 299 Query 304 AGAHPRAR 311 A AHPRAR Sbjct 300 AQAHPRAR 307 >gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] Length=324 Score = 411 bits (1057), Expect = 7e-113, Method: Compositional matrix adjust. Identities = 218/306 (72%), Positives = 245/306 (81%), Gaps = 7/306 (2%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 L+ YLDHLT+ERG AANTLSSYRRDL RY ++L E GI DLA V VS FLVALR G Sbjct 21 LRAYLDHLTVERGAAANTLSSYRRDLDRYREYLVELGIDDLASVTSTQVSGFLVALREGS 80 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 G L+A SAAR+LIAVRGLHRFAAAEGL DVAR VRPP P++RLPK+L+ID V+ Sbjct 81 --DGRPPLAASSAARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDTVI 138 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGK 187 +LLE AGGD SD P LR+RA+LELLYS GARISE LD+DDID +RSV+L GKGGK Sbjct 139 ALLEAAGGDGESDTPSRLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGKGGK 198 Query 188 QRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERA 247 QR+VP+GRPA+ A++AYLVRGRP L + + A+FLN RGGRLSRQSAWQVL AAERA Sbjct 199 QRVVPIGRPALAAIEAYLVRGRPSLVK--KSNPALFLNVRGGRLSRQSAWQVLATAAERA 256 Query 248 GITAG---VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWA 304 GI VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTLVTV ALREV+A Sbjct 257 GIDTDAVHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQALREVYA 316 Query 305 GAHPRA 310 AHPRA Sbjct 317 QAHPRA 322 >gi|333919201|ref|YP_004492782.1| Tyrosine recombinase XerD subunit [Amycolicicoccus subflavus DQS3-9A1] gi|333481422|gb|AEF39982.1| Tyrosine recombinase XerD subunit [Amycolicicoccus subflavus DQS3-9A1] Length=310 Score = 409 bits (1050), Expect = 4e-112, Method: Compositional matrix adjust. Identities = 214/308 (70%), Positives = 258/308 (84%), Gaps = 4/308 (1%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 L+ Q+ YLDHL +ERG + NTL+SY+RDLRRY HL +R I+DLA V EHDV +F++AL Sbjct 7 LSGQVTAYLDHLAVERGSSRNTLTSYQRDLRRYVAHLADRQISDLADVTEHDVEDFVLAL 66 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R+GDP + LSA S ARALIA RGLH+FA AEG+A DVAR+V+PP+P +RLPK+L + Sbjct 67 RKGDPANNVRGLSASSVARALIAARGLHKFAHAEGMASADVARSVKPPSPGKRLPKALPL 126 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 D+VL++LE G + S+GP LR+RA+LELLYS+GARI+EA+ LDLDD+D +R+VLLRG Sbjct 127 DDVLAILEAVGTE--SEGPRGLRDRALLELLYSSGARITEAISLDLDDLDLESRAVLLRG 184 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGGKQR+VP+GRPA+ ALDAY+VRGRP L R R A+FLN RGGRLSRQSAWQVLQDA Sbjct 185 KGGKQRIVPLGRPAIAALDAYVVRGRPALVR--RFDPAVFLNNRGGRLSRQSAWQVLQDA 242 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 A+RAG+T+ VSPH LRHSFATHLLEGGADVRV+QELLGHASVTTTQ+YT VTV ALREVW Sbjct 243 AKRAGVTSAVSPHTLRHSFATHLLEGGADVRVLQELLGHASVTTTQVYTAVTVTALREVW 302 Query 304 AGAHPRAR 311 A AHPRAR Sbjct 303 AEAHPRAR 310 >gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM 10152] gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152] Length=316 Score = 400 bits (1027), Expect = 2e-109, Method: Compositional matrix adjust. Identities = 223/317 (71%), Positives = 247/317 (78%), Gaps = 11/317 (3%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 LA ++ YLDHL +ERG A NTL +YRRDL RY L ERGI L +V E DV+ F VAL Sbjct 2 LAREIDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLTERGIGGLEQVREADVAAFTVAL 61 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R G D L+A S ARALIAVRGLHRFAAAEG+ DVA AV+PPTP RRLPK+L Sbjct 62 RSGGGDH--PPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKALPY 119 Query 124 DEVLSLLEGAGGDKPSDG--------PLTLRNRAVLELLYSTGARISEAVGLDLDDIDTH 175 D+VL LLE AGG DG P LR+RA+LELLYSTGARISE VGLD+DD+DT Sbjct 120 DQVLRLLEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDLDTT 179 Query 176 ARSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAA-IFLNARGGRLSRQ 234 R+V+LRGKGGKQR+VP+GRPA+ A+DAYLVRGRP LA G+GT +FLN RGGRLSRQ Sbjct 180 ERAVVLRGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRLSRQ 239 Query 235 SAWQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLV 294 SAWQVLQ AAERAGI A VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLV Sbjct 240 SAWQVLQTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLV 299 Query 295 TVHALREVWAGAHPRAR 311 TV LREVWA AHPRAR Sbjct 300 TVSTLREVWATAHPRAR 316 >gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length=313 Score = 382 bits (982), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 201/308 (66%), Positives = 242/308 (79%), Gaps = 6/308 (1%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 L+ GYL+HL +ERG A +TL SY RDLRRY+ HL E G+ L +V +S FL L Sbjct 11 LSSVFSGYLNHLAVERGTARSTLDSYARDLRRYADHLLESGVRALGEVRSTHLSAFLAEL 70 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R G P+ AL+ SAARALIA RGLHRFA A+G+ E+DVAR + PP+P +RLPK+L + Sbjct 71 REGGPER--PALAQSSAARALIAARGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPV 128 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 +VL LL+ GG+ LR+RA+LELLYS+GARISEAVGLD+DD+D R++LL G Sbjct 129 SDVLRLLDNTGGEDVRG----LRDRALLELLYSSGARISEAVGLDVDDVDEAERTILLDG 184 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGG+QRLVPVGRPA+ AL AY+VR RP LA RGRG++A+FLN+RG RLSRQSAW L+ A Sbjct 185 KGGRQRLVPVGRPALAALGAYMVRARPVLAGRGRGSSAVFLNSRGTRLSRQSAWNALKSA 244 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 AERAGI +GVSPH+LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTL+TV+ LREV Sbjct 245 AERAGIGSGVSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNTLREVH 304 Query 304 AGAHPRAR 311 A AHPRAR Sbjct 305 ATAHPRAR 312 >gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium intracellulare ATCC 13950] Length=209 Score = 382 bits (982), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 191/209 (92%), Positives = 201/209 (97%), Gaps = 0/209 (0%) Query 103 DVARAVRPPTPSRRLPKSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARIS 162 DVARAVRPPTP RRLPKSLT+D+VL+LLEGAGGD P+DGPLTLRNRA+LELLYSTGARIS Sbjct 1 DVARAVRPPTPGRRLPKSLTVDQVLALLEGAGGDSPADGPLTLRNRALLELLYSTGARIS 60 Query 163 EAVGLDLDDIDTHARSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAI 222 EAVGLD+DD+DT ARSVLLRGKGGKQRLVP+GRPAV ALDAYLVRGR DLARRGRGT AI Sbjct 61 EAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSDLARRGRGTPAI 120 Query 223 FLNARGGRLSRQSAWQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGH 282 FLN RGGRLSRQSAWQVLQDAAERAGIT+GVSPHMLRHSFATHLLEGGADVRVVQELLGH Sbjct 121 FLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGH 180 Query 283 ASVTTTQIYTLVTVHALREVWAGAHPRAR 311 ASVTTTQIYT+VTVHALREVWA AHPRAR Sbjct 181 ASVTTTQIYTMVTVHALREVWAEAHPRAR 209 >gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|340529435|gb|AEK44640.1| integrase/recombinase XerD [Amycolatopsis mediterranei S699] Length=310 Score = 375 bits (964), Expect = 4e-102, Method: Compositional matrix adjust. Identities = 206/303 (68%), Positives = 235/303 (78%), Gaps = 6/303 (1%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 + YLDHL +ERG A NTL SY RDLRRY+ HL+ G+ +A V V+ F ALR GD Sbjct 12 IAAYLDHLVVERGTARNTLDSYARDLRRYAAHLDGLGVAKIADVTSAHVTAFGAALREGD 71 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 + A S+ + A AVRGLH+FA AEGL E + AR VRPPTP++RLPK+L +D+VL Sbjct 72 DEHRPLAASSAARALV--AVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKALPVDDVL 129 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGK 187 LLE P DG LR+RA+LELLYSTGARISEAVGLD+DD+D R+VLL GKGGK Sbjct 130 RLLE----TPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGKGGK 185 Query 188 QRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERA 247 QRLVP+GRPA+ AL AY VR RP LA GRGTAA+FLNARG RLSRQSAWQVL+D A RA Sbjct 186 QRLVPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTAGRA 245 Query 248 GITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAH 307 GITA VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTLVTV+ LREV+A AH Sbjct 246 GITAVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATAH 305 Query 308 PRA 310 PRA Sbjct 306 PRA 308 >gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] Length=311 Score = 375 bits (962), Expect = 7e-102, Method: Compositional matrix adjust. Identities = 203/307 (67%), Positives = 235/307 (77%), Gaps = 6/307 (1%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 L + + Y+DHLT+ERG A NT+ Y RDLRRY HL + G+TDL +V V F +L Sbjct 9 LRVVVAAYVDHLTVERGTARNTVDGYARDLRRYLAHLADAGVTDLRQVARDHVVGFAASL 68 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R G+ D L+ SAARAL AVRGLHRFA AEG E D AR VRPP +RRLPK+L + Sbjct 69 RHGEGDR--PPLAPSSAARALSAVRGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPV 126 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 +VL LL GD +LR+RA+LELLYSTGARISEA GLD+DD+D R+V+L G Sbjct 127 ADVLRLLNTPTGDDAR----SLRDRALLELLYSTGARISEATGLDVDDVDRAERTVVLDG 182 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGG+QRLVPVGRPA+ ALDAYL+R RP LA +GRGT A+FLNARGGRLSRQ AWQVL+ A Sbjct 183 KGGRQRLVPVGRPALEALDAYLIRARPALAAKGRGTGAVFLNARGGRLSRQGAWQVLKVA 242 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 AERAGI+ VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTLVTV+ LREV+ Sbjct 243 AERAGISTPVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVY 302 Query 304 AGAHPRA 310 A HPRA Sbjct 303 ATTHPRA 309 >gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614] gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614] Length=318 Score = 370 bits (951), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 208/314 (67%), Positives = 244/314 (78%), Gaps = 11/314 (3%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 +A ++ YLDHLT+ERG+A NTL+SYRRDLRRY ++L E G+ LA V E V+ FLV L Sbjct 9 VARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRL 68 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R GD D ALSA SAAR ++AVRG HRFA A+GLA D A AV+PPTP++RLPK+L + Sbjct 69 REGDRDH--PALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPL 126 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHAR----SV 179 +V ++LE AG + L LR+RA+LE+LY TGARISEAVGLD+DD+D +V Sbjct 127 ADVEAILEAAGAPGTT---LALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVEGTV 183 Query 180 LLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDL-ARRGRGTA-AIFLNARGGRLSRQSAW 237 LLRGKGGK+RLVPVG A A+DAYLVRGRP+L A R T A+FLNARGGRLSRQSAW Sbjct 184 LLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQSAW 243 Query 238 QVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVH 297 VL AAERAG+T VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQ+YTLVTV Sbjct 244 AVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVD 303 Query 298 ALREVWAGAHPRAR 311 LREV+A AHPRAR Sbjct 304 NLREVFATAHPRAR 317 >gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] Length=313 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 206/308 (67%), Positives = 240/308 (78%), Gaps = 5/308 (1%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 +A + YLDHLT+ERG A NT++SYRRDL RY +L RGI+ LA+V E D+ EFLVAL Sbjct 11 IAAPVARYLDHLTVERGAAHNTVTSYRRDLERYQNYLIARGISGLAEVTESDIREFLVAL 70 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 RRGD +G+ L+ S AR L+A R H FA EG+ DVA AVRPP P+RRLPKSL + Sbjct 71 RRGDEATGSRPLADSSIARTLVATRRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPV 130 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG 183 DEVL++LE + D P LR+RA+LELLYS GARISEA LD+DD+DT AR+V LRG Sbjct 131 DEVLAILEAS---STGDHPRALRDRALLELLYSCGARISEATSLDVDDLDTAARAVRLRG 187 Query 184 KGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 KGGK+R+VPVG PA A+DAYLVRGRP LA R A+FLNARGGRLSRQSAWQVL A Sbjct 188 KGGKERIVPVGGPAADAIDAYLVRGRPVLA--TRSAPALFLNARGGRLSRQSAWQVLVSA 245 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 AERAG+ VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQ+YTLVTV+ +REV+ Sbjct 246 AERAGLDKAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNTMREVY 305 Query 304 AGAHPRAR 311 A AHPRAR Sbjct 306 ATAHPRAR 313 >gi|343928405|ref|ZP_08767853.1| tyrosine recombinase XerC [Gordonia alkanivorans NBRC 16433] gi|343761590|dbj|GAA14779.1| tyrosine recombinase XerC [Gordonia alkanivorans NBRC 16433] Length=305 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 209/309 (68%), Positives = 241/309 (78%), Gaps = 5/309 (1%) Query 3 TLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVA 62 T+A + +LDHLT+ERG AANT+SSYRRDL RY ++LE R I L V E DV EFLV Sbjct 2 TIAADISRFLDHLTVERGAAANTVSSYRRDLERYKRYLESRDIASLDAVAEEDVREFLVD 61 Query 63 LRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLT 122 LRRGDPD+G L+ S AR L+A R H+FA EG+ DVA AVRPP P+RRLPKSL Sbjct 62 LRRGDPDAGFTPLADSSIARTLVATRRFHKFAVEEGIVTTDVAHAVRPPRPARRLPKSLP 121 Query 123 IDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182 +DEVL++LE AG D D P LR+RA+LE LYS GARISEA LD+DD+D R+V LR Sbjct 122 VDEVLAILEAAGAD---DHPRALRDRALLEFLYSCGARISEATSLDIDDLDLDTRAVRLR 178 Query 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242 GKGGK+RLVP+G PA+ A+DAYLVRGRP L R T A+FLNARGGRLSRQSAWQVL Sbjct 179 GKGGKERLVPLGGPAIDAIDAYLVRGRPALV--SRATPALFLNARGGRLSRQSAWQVLVT 236 Query 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREV 302 AAERAG+ VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQ+YTLVTV+ +REV Sbjct 237 AAERAGLDKAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNTMREV 296 Query 303 WAGAHPRAR 311 +A AHPRAR Sbjct 297 YAVAHPRAR 305 >gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4] gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4] Length=310 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/314 (67%), Positives = 240/314 (77%), Gaps = 10/314 (3%) Query 1 MKTLALQLQG----YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDV 56 M ++++G YLDHL +ERG A NTL SY RDLRRY+ HLE G+ LA+V V Sbjct 1 MNNAGVEVRGAIATYLDHLVVERGTARNTLDSYSRDLRRYAAHLEAAGVVRLAEVTPAHV 60 Query 57 SEFLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRR 116 + F ALR GD + A S+ + A AVRGLH+FA A+GL E D AR VRPP ++R Sbjct 61 TSFGAALREGDEEHQPLAASSAARALV--AVRGLHKFAHADGLTEHDPARDVRPPAAAKR 118 Query 117 LPKSLTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHA 176 LPK+L + +VL LL+ P DG LR+RA+LELLYSTGARISEAVGLD+DD+D Sbjct 119 LPKALPVADVLKLLD----TPPRDGERALRDRALLELLYSTGARISEAVGLDVDDVDDTE 174 Query 177 RSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSA 236 R+VLL GKGGKQRLVP+GRPA+ ALDAYLVR RP LA GRGT+AIFLNARG RLSRQSA Sbjct 175 RTVLLDGKGGKQRLVPIGRPALEALDAYLVRARPALAANGRGTSAIFLNARGSRLSRQSA 234 Query 237 WQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTV 296 WQVL+D AERAGITA VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTLVTV Sbjct 235 WQVLKDTAERAGITAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTV 294 Query 297 HALREVWAGAHPRA 310 LREV+A AHPRA Sbjct 295 TTLREVYATAHPRA 308 >gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length=307 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 206/304 (68%), Positives = 238/304 (79%), Gaps = 9/304 (2%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 + ++ HL +ERG + NTL +Y DLRRY HL ERG+ DLA V E DVS F+ ALR Sbjct 12 VDAFMAHLAVERGSSPNTLRAYGNDLRRYVAHLRERGVDDLAAVQEADVSGFVAALR--- 68 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 SG A L+A SAARAL AVRGLHRFAA +GL + DV+RAV PP +RRLP++LT+DEV Sbjct 69 --SGPAPLAASSAARALAAVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLTVDEVE 126 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGK 187 LL G GD GP LR+RA+LELLYSTGARISEAVG+D+DD+D +R+VLL GKGGK Sbjct 127 QLLAGCIGD----GPTGLRDRALLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGK 182 Query 188 QRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERA 247 QR+VPVGRPA+ A+DA+LVRGRP LA RGRG+ A+ LNARG RLSRQSAW VL+ AAE A Sbjct 183 QRVVPVGRPALAAVDAWLVRGRPALASRGRGSPALLLNARGARLSRQSAWHVLRGAAEVA 242 Query 248 GITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAH 307 G+ A VSPH LRH FATHLL GGADVRVVQELLGHASV TTQIYT VTV LREV+A AH Sbjct 243 GVRAEVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAH 302 Query 308 PRAR 311 PRAR Sbjct 303 PRAR 306 >gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] Length=313 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 207/310 (67%), Positives = 241/310 (78%), Gaps = 12/310 (3%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 L YL+HL +ERG++ANT++SYRRDLRRY HL+ RG+ LA+V E DV+ FL ALR GD Sbjct 9 LSSYLNHLAVERGLSANTVASYRRDLRRYLDHLKARGLRTLAEVREDDVAAFLTALREGD 68 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 D AL A SAARA AVRGLHRFA EGL D A A+RPP RRLPK+++++EV Sbjct 69 ADH--PALVASSAARAFSAVRGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEEVE 126 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS------VLL 181 L+ G P PLTLRNRA+LELLY TGARISEAVGL +DD+ T A + V L Sbjct 127 RLIAACG---PDGSPLTLRNRALLELLYGTGARISEAVGLAVDDVTTGAPTDPARDQVRL 183 Query 182 RGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQ 241 RGKGG+ R+VP+GR A ALDAYLVR RP LA +GRGT+A+FLNARGGRL+RQ AW+VLQ Sbjct 184 RGKGGRTRIVPLGRYARQALDAYLVRARPQLAAQGRGTSALFLNARGGRLTRQGAWEVLQ 243 Query 242 DAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALRE 301 AAERAG++ GVSPHMLRHSFATHLL+GGADVRVVQELLGHASV TTQ+YTLVTV LRE Sbjct 244 AAAERAGLS-GVSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLRE 302 Query 302 VWAGAHPRAR 311 V+A AHPRAR Sbjct 303 VYAAAHPRAR 312 >gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] Length=313 Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 194/310 (63%), Positives = 232/310 (75%), Gaps = 2/310 (0%) Query 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 M + + YLDHLT+ERG+AANTL+SYRRDLRRY ++L GI+ L +V E V +FL Sbjct 1 MSDIGRAVSAYLDHLTVERGLAANTLASYRRDLRRYDEYLAGAGISALGRVTEAVVGDFL 60 Query 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 + LR GD L+A SA R ++AVRG H+F EGL +D A AV+PP P +RLPK+ Sbjct 61 MRLREGDEHH--PPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKA 118 Query 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 L++DEV +L A G L R+ A+LE LY TGARISEAVGLD+DD+D + VL Sbjct 119 LSVDEVTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVL 178 Query 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240 LRGKG K+R+VPVG A AL AY VRGRPDL RGRGT A+FLNARGGRLSRQSAW VL Sbjct 179 LRGKGSKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVL 238 Query 241 QDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 + AA+RAGI+ +SPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQ+YTLVTV LR Sbjct 239 RRAAQRAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLR 298 Query 301 EVWAGAHPRA 310 EV+A +HPRA Sbjct 299 EVYATSHPRA 308 >gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] Length=315 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 200/306 (66%), Positives = 240/306 (79%), Gaps = 8/306 (2%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 + GYLDHLT+ERG+AANT+SSYRRDLRRY++ L+ G+ L +V E DV+ FL ALR+GD Sbjct 13 VTGYLDHLTVERGLAANTISSYRRDLRRYTEFLDAAGVRGLGEVAESDVAGFLAALRQGD 72 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 D LSA SAARA++AVRGLHRFA +GL DVA VRPP+P+RRLPK++ ++ V+ Sbjct 73 DDH--PPLSATSAARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLPKAIPVESVV 130 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGK 187 +L+E AG +GP LR+RA+LELLY TGARISEAVGL +DD+D V L GKGGK Sbjct 131 ALIEAAGA---LEGPRGLRDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRLAGKGGK 187 Query 188 QRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAA---IFLNARGGRLSRQSAWQVLQDAA 244 QR+VPVG A+ A++ YLVR RP LA GRG +FLNARGG LSRQSAW +L+ AA Sbjct 188 QRIVPVGSYALRAVEDYLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWAILRTAA 247 Query 245 ERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWA 304 ERAG+TA VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQ+YTLVTV LREV+A Sbjct 248 ERAGLTAEVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYA 307 Query 305 GAHPRA 310 +HPRA Sbjct 308 SSHPRA 313 >gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] Length=307 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 202/301 (68%), Positives = 240/301 (80%), Gaps = 5/301 (1%) Query 11 YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70 YLDHLT+ERG A NT++SYRRDL RY+ L RG+T +++V E DV FLVALRRGDP+ Sbjct 12 YLDHLTVERGSATNTVASYRRDLLRYNTFLAGRGVTTMSEVTEDDVRAFLVALRRGDPER 71 Query 71 GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130 G L+ S AR L+A RG H+F AAEGL DVA +VRPP P RRLPKSL ID+VL++L Sbjct 72 GVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKSLPIDDVLAIL 131 Query 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRL 190 + AG DGP LR+RA++ELLYS GARISE LDLDD+D R+V+LRGKGGK+R+ Sbjct 132 DAAGA---VDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVVLRGKGGKERI 188 Query 191 VPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGIT 250 VPVG PA+ A+DAYLVRGRP L + + T A+FLN RGGRLSRQSAWQVL DAAERAG+ Sbjct 189 VPVGGPAIEAVDAYLVRGRPALVK--KSTPALFLNIRGGRLSRQSAWQVLVDAAERAGVD 246 Query 251 AGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRA 310 VSPH LRHSFATHLL+GGADVRVVQELLGH+SVTTTQ+YTLVTV+ +REV+A +HPRA Sbjct 247 KEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNTMREVYATSHPRA 306 Query 311 R 311 R Sbjct 307 R 307 >gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX] gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX] Length=321 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 202/315 (65%), Positives = 232/315 (74%), Gaps = 19/315 (6%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 ++GYLDHLT+ERG+AANTL SYRRDL RY L RGITDL V DV+ FL LR GD Sbjct 12 VRGYLDHLTVERGLAANTLQSYRRDLNRYLDFLTARGITDLRDVRADDVASFLRTLREGD 71 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 + L A SA RA+IAVRGLHRFA EGL D A VRPP RRLPK++T+ +V Sbjct 72 --AHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPALQRRLPKAITVAQVE 129 Query 128 SLLEGA--GGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDI---------DTHA 176 +LL A GG GP LR+RA++ELLY TGARISE VGLD+DD+ DT Sbjct 130 ALLAAADIGG-----GPRALRDRALIELLYGTGARISEVVGLDVDDVTRLRPDPHADTEV 184 Query 177 RSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSA 236 +V RGKGGK+R+VPVGR A A+DAYLVR RP LA GRG++A+FLNARGGRL+RQ A Sbjct 185 AAVRFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSALFLNARGGRLTRQGA 244 Query 237 WQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTV 296 W VL AAERAG+ VSPH LRHSFATHL++GGADVRVVQELLGHASVTTTQ+YTLVTV Sbjct 245 WAVLHAAAERAGLR-DVSPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTV 303 Query 297 HALREVWAGAHPRAR 311 LREV+A AHPRAR Sbjct 304 DRLREVYAAAHPRAR 318 >gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] Length=310 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 196/311 (64%), Positives = 236/311 (76%), Gaps = 8/311 (2%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 L L+GYL HL +ERG+AA+TL++YRRDL RY HL RG T+ A++ E D ++++ L Sbjct 5 LTAALEGYLAHLAVERGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVL 64 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R G G A LS SAAR+++A+RG HRF A +GLA D A +RPP RRLPK++ + Sbjct 65 RTGS--DGRAVLSPASAARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIGV 122 Query 124 DEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDID-THAR-SVLL 181 D+V LL+ AG DGP+ LR+RA+LEL+YSTGARISEAVGLD+DD+D T R +V L Sbjct 123 DDVARLLDAAG---LGDGPVPLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAVRL 179 Query 182 RGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQ 241 GKGGK+R+VPVG A A+DAYLVRGRP LA GRGT AIFLN RG RLSRQSAW VL+ Sbjct 180 LGKGGKERVVPVGSYAAQAVDAYLVRGRPALAAAGRGTPAIFLNTRGARLSRQSAWAVLR 239 Query 242 DAAERAGITAG-VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALR 300 AAERAG+ A +SPH LRHSFATHLL GGADVRVVQELLGHASV TTQIYTLVT +R Sbjct 240 TAAERAGLAADHLSPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTPDTMR 299 Query 301 EVWAGAHPRAR 311 EV+A +HPRAR Sbjct 300 EVYAASHPRAR 310 >gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] Length=298 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 196/303 (65%), Positives = 231/303 (77%), Gaps = 6/303 (1%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 ++ YLDHLT+ERG+AANTLSSYRRDLRRY++ L ++ + DL V E VS FL LR G Sbjct 1 MRTYLDHLTVERGLAANTLSSYRRDLRRYAEFLAQQDVDDLTAVSEATVSGFLAHLREGS 60 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 + ALSA SAAR ++AVRG H+FA A+GL E + A V+PP +RLPK+L + +V Sbjct 61 EEH--PALSATSAARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALPLSDVE 118 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGK 187 ++LE AG PL LR+RA+LE+LY TGARISEAVGLD+DD+D LLRGKGGK Sbjct 119 AILEAAGA---PGTPLALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGKGGK 175 Query 188 QRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERA 247 +R+VPVG A+ A++AYL R RPDLA R A+FLNARGGRLSRQSAW VL AAERA Sbjct 176 ERIVPVGSYAIEAVEAYLTRARPDLAS-ARSGGALFLNARGGRLSRQSAWTVLTRAAERA 234 Query 248 GITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAH 307 GI VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLVTV LREV+A AH Sbjct 235 GIDKDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDNLREVFATAH 294 Query 308 PRA 310 PRA Sbjct 295 PRA 297 >gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] Length=311 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 193/310 (63%), Positives = 228/310 (74%), Gaps = 16/310 (5%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALR-R 65 +++G+LDH+ IE+G + NTL SY RDLR+Y +HL RGI A V E DV++FL +LR R Sbjct 13 EVRGWLDHVRIEKGASDNTLKSYERDLRKYREHLHHRGIERAAAVSERDVTDFLASLRER 72 Query 66 GDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDE 125 G L+A SAAR L+AVRG HRF A EG D A V PPTP RLPK++ I+ Sbjct 73 G--------LAASSAARTLVAVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLPKAIPIEA 124 Query 126 VLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARS----VLL 181 V LL D P +LR+RA+LE+LY GARISEA+ LD+DD+DT V L Sbjct 125 VERLL---AASSVGDTPESLRDRALLEVLYGVGARISEAIDLDVDDLDTGVAGEVGLVRL 181 Query 182 RGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQ 241 GKG K+R+VPVGR AV A+DAYLVRGRP LA+RG+G A+FLN RG RLSRQSAW V+Q Sbjct 182 LGKGSKERIVPVGRFAVEAVDAYLVRGRPALAQRGQGGPALFLNQRGRRLSRQSAWSVVQ 241 Query 242 DAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALRE 301 AAERAG+T VSPH LRHSFATHLL+GGADVRVVQELLGHASVTTTQIYTLV+ H LRE Sbjct 242 RAAERAGLTEHVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVSPHRLRE 301 Query 302 VWAGAHPRAR 311 V+AGAHPRAR Sbjct 302 VYAGAHPRAR 311 >gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] Length=311 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 191/313 (62%), Positives = 230/313 (74%), Gaps = 9/313 (2%) Query 1 MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60 ++T+ ++ YL H+ +E+G+A NT++ YRRDLRRY + LE+RG TD V E ++ FL Sbjct 3 IRTVGDLVEAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFLEQRGTTDPRAVTEEHITAFL 62 Query 61 VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120 ALR GD D A+S S+ARA++AVRGLHRFAA +G+ D +R VRPPTP RRLPK+ Sbjct 63 AALRTGDADHPPLAVS--SSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKA 120 Query 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180 +T+ EV LL G P + LR+RA+LE+LY TGARISEAVGL +DD+D A V Sbjct 121 ITVAEVERLLAAVDGHAPRE----LRDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVR 176 Query 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDL---ARRGRGTAAIFLNARGGRLSRQSAW 237 LRGKG KQR+VP+G A AL YL GRP L AR G A+FLNARGGRLSRQSAW Sbjct 177 LRGKGSKQRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAW 236 Query 238 QVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVH 297 VL+ AA RAG+ +SPH LRHSFATHLLEGGAD+RVVQELLGHASVTTTQIYTLVTV Sbjct 237 TVLRRAALRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTVD 296 Query 298 ALREVWAGAHPRA 310 LREV+A AHPRA Sbjct 297 TLREVYAMAHPRA 309 >gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] Length=340 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 187/325 (58%), Positives = 228/325 (71%), Gaps = 22/325 (6%) Query 4 LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVAL 63 L+ Q++ YLDHLT+ERG + +T+SSYRRDL RY L ER TDLA+V ++EFL Sbjct 20 LSEQVKSYLDHLTVERGASKHTVSSYRRDLDRYMDFLRERSATDLAQVTSAQIAEFLAWS 79 Query 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 R DP+ L+ SAAR L AVRGLH+FA EG+A D A V+PP P RRLPK+L + Sbjct 80 R--DPEG--MGLAQSSAARGLSAVRGLHKFAVLEGMAAQDAAHGVKPPQPGRRLPKALPV 135 Query 124 DEVLSLLEGAG-GDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182 D+V++++E +G D SD P LR+ A+LEL+Y TG R+SEAVGL+L D+D ARS + Sbjct 136 DQVIAIIEASGMADSESDIPRALRDAALLELMYCTGCRVSEAVGLNLLDVDFQARSARVL 195 Query 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDL-----------------ARRGRGTAAIFLN 225 GKG K+RLVP+G PAV ALDAYLVRGRP L A G+ T A+FLN Sbjct 196 GKGDKERLVPLGGPAVAALDAYLVRGRPALLAARIPRGSASRSYSREAPPGKATNALFLN 255 Query 226 ARGGRLSRQSAWQVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASV 285 ARG R SRQS W L+ AA +AG+ A +SPH LRHS ATHLLEGGADVRVVQELLGHASV Sbjct 256 ARGERFSRQSTWASLRHAAAKAGVKAEISPHTLRHSCATHLLEGGADVRVVQELLGHASV 315 Query 286 TTTQIYTLVTVHALREVWAGAHPRA 310 TTQIYT+V+ LREV+A AHPRA Sbjct 316 VTTQIYTMVSATTLREVYATAHPRA 340 >gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] Length=319 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 184/305 (61%), Positives = 222/305 (73%), Gaps = 11/305 (3%) Query 11 YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70 YL H+ +ERG+AANTLS+YRRDL RYS L +G+ + H V+ F+ AL D Sbjct 19 YLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPGSITRHHVTAFVQAL--SDGSD 76 Query 71 GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130 G AAL SAAR ++AVRGLH+F A EG D A V PP P +RLPK++++ EV +L Sbjct 77 GAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKRLPKAISVGEVTRIL 136 Query 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDI---DTHARSVLLR--GKG 185 E AG D + LR+RA+LE LYSTGARISEAVGLD+DD+ DT ++R GKG Sbjct 137 EAAGSDTATG----LRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGDPAIVRLFGKG 192 Query 186 GKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAE 245 K+RLVP+G A+ AY+VRGRP LA +G+GT A+FLNARGGR+SRQSAW +L+ AAE Sbjct 193 SKERLVPLGSFGARAVGAYVVRGRPLLASKGKGTPALFLNARGGRISRQSAWTILKTAAE 252 Query 246 RAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAG 305 +A IT VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTLVT LREV+A Sbjct 253 KANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAA 312 Query 306 AHPRA 310 AHPRA Sbjct 313 AHPRA 317 >gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] Length=306 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 180/307 (59%), Positives = 223/307 (73%), Gaps = 7/307 (2%) Query 7 QLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRG 66 Q+Q YLDHL +ERG + +T +SYRRDL RY+ L +R + DLA+V V+EFL R Sbjct 4 QVQQYLDHLAVERGASKHTTASYRRDLGRYADFLRQRSVADLAQVTSAQVAEFLAWSR-- 61 Query 67 DPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEV 126 D L+ SAAR L AVRGLHRFA EG+ DVA V+PP P RRLPK+L +D+V Sbjct 62 --DPAGMGLAQSSAARGLSAVRGLHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQV 119 Query 127 LSLLEGAG-GDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKG 185 +++LE +G D SD P LR++A+LEL+Y TG R+SEAVGL+L D+D +RS + GKG Sbjct 120 IAILEASGIADAESDVPRALRDQALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKG 179 Query 186 GKQRLVPVGRPAVHALDAYLVRGRPDL--ARRGRGTAAIFLNARGGRLSRQSAWQVLQDA 243 K+RLVP+G A+ A++AYLVRGRP R G+ T A+FLNARG R SRQSAW L+ A Sbjct 180 DKERLVPLGSAALAAVEAYLVRGRPAFLAQRAGKATNALFLNARGARFSRQSAWASLRHA 239 Query 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303 A +AG+ A +SPH LRHS ATHLLEGGADVRVVQELLGHASV TTQIYT+V+ LREV+ Sbjct 240 AAKAGVQAEISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVY 299 Query 304 AGAHPRA 310 A AHPRA Sbjct 300 ATAHPRA 306 >gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] Length=308 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 194/306 (64%), Positives = 234/306 (77%), Gaps = 8/306 (2%) Query 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67 L YL HL +ERG+AANTL+SYRRDL RY +HL+ RG ++ E DV+ FL ALR GD Sbjct 8 LSSYLAHLALERGLAANTLASYRRDLLRYVEHLKSRGRVTFGEIAEGDVTAFLAALRAGD 67 Query 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127 + AL A SAARA+ AVRGLHRFA EG+++ D A VRPP RRLPK++++++V Sbjct 68 EEH--QALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVNDVE 125 Query 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDID--THARSVLLRGKG 185 L+ +G P PLT+RNRA+LELLY TGARISEAVGL +DD+D + + V LRGKG Sbjct 126 RLIAASG---PEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRGKG 182 Query 186 GKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAE 245 G+ RLVP+GR A AL AYL R RP +A GRGT+ +FLNARGGRL+RQ AW+VLQ AAE Sbjct 183 GRTRLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWEVLQAAAE 242 Query 246 RAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAG 305 R G+ AG+SPH+LRHSFATHLL+GG DVRVVQELLGHASVTTTQ+YTLVTV LRE +A Sbjct 243 RGGL-AGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAA 301 Query 306 AHPRAR 311 AHPRAR Sbjct 302 AHPRAR 307 >gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length=334 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 184/305 (61%), Positives = 224/305 (74%), Gaps = 11/305 (3%) Query 11 YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70 YL H+ +ERG+AANTLS+YRRDL RYS++L +G + + H V+ ++ AL D Sbjct 34 YLQHMGVERGLAANTLSAYRRDLARYSRYLAAQGCSSPQDITRHHVTGYVRAL--SDGSD 91 Query 71 GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130 G +AL SAAR ++AVRGLH+F A EG D A V PP P +RLPK++++DEV +L Sbjct 92 GGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAISVDEVTRIL 151 Query 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDI-----DTHARSVLLRGKG 185 E AG D + LR+RA+LE LYSTGARISEAVGLD+DDI ++ V L GKG Sbjct 152 EAAGTDTATG----LRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRLFGKG 207 Query 186 GKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAE 245 K+RLVP+G ALDAYLVRGRP LA +G+GT A+FLNARGGR+SRQSAW +L+ AA Sbjct 208 SKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAAG 267 Query 246 RAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAG 305 +A IT VSPH LRHSFATHLLEGGADVRVVQELLGHASVTTTQ+YTLVT LRE++A Sbjct 268 KAQITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAA 327 Query 306 AHPRA 310 AHPRA Sbjct 328 AHPRA 332 Lambda K H 0.320 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 533708119992 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40