BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1706A
Length=55
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841166|ref|NP_336203.1| hypothetical protein MT1747 [Mycoba... 112 1e-23
gi|31792893|ref|NP_855386.1| hypothetical protein Mb1733c [Mycob... 112 2e-23
gi|240173126|ref|ZP_04751784.1| integral membrane drug efflux pr... 42.4 0.022
gi|240172330|ref|ZP_04750989.1| integral membrane drug efflux pr... 40.4 0.088
gi|15840198|ref|NP_335235.1| drug transporter [Mycobacterium tub... 39.3 0.17
gi|339630852|ref|YP_004722494.1| multidrug resistance integral m... 39.3 0.18
gi|339297443|gb|AEJ49553.1| drug transporter [Mycobacterium tube... 39.3 0.18
gi|15607923|ref|NP_215297.1| multidrug resistance integral membr... 39.3 0.18
gi|253797730|ref|YP_003030731.1| multidrug resistance membrane e... 39.3 0.19
gi|289568735|ref|ZP_06448962.1| multidrug resistance membrane ef... 38.9 0.24
gi|41406716|ref|NP_959552.1| hypothetical protein MAP0618c [Myco... 38.5 0.33
gi|254818438|ref|ZP_05223439.1| EmrB efflux protein [Mycobacteri... 38.5 0.34
gi|254773667|ref|ZP_05215183.1| EmrB efflux protein [Mycobacteri... 38.5 0.35
gi|118465955|ref|YP_880004.1| EmrB efflux protein [Mycobacterium... 38.5 0.36
gi|342862173|ref|ZP_08718815.1| EmrB efflux protein [Mycobacteri... 38.1 0.41
gi|183983099|ref|YP_001851390.1| integral membrane drug efflux p... 37.7 0.58
gi|118616342|ref|YP_904674.1| integral membrane drug efflux prot... 36.6 1.1
gi|183984873|ref|YP_001853164.1| integral membrane drug efflux p... 36.6 1.3
gi|11498744|ref|NP_069973.1| multidrug resistance protein [Archa... 35.8 1.9
gi|240168038|ref|ZP_04746697.1| integral membrane drug efflux pr... 35.8 2.4
gi|183982968|ref|YP_001851259.1| integral membrane drug efflux p... 35.4 2.6
gi|118616372|ref|YP_904704.1| multidrug resistance integral memb... 35.4 2.7
gi|183982530|ref|YP_001850821.1| integral membrane drug efflux p... 35.4 3.0
gi|183984924|ref|YP_001853215.1| multidrug resistance integral m... 35.4 3.0
gi|343925807|ref|ZP_08765322.1| putative drug resistance efflux ... 35.0 3.2
gi|342862172|ref|ZP_08718814.1| EmrB efflux protein [Mycobacteri... 34.3 5.8
gi|118463591|ref|YP_880005.1| EmrB efflux protein [Mycobacterium... 33.9 8.4
gi|296166470|ref|ZP_06848902.1| drug transporter [Mycobacterium ... 33.5 9.4
gi|333986795|ref|YP_004519402.1| EmrB/QacA subfamily drug resist... 33.5 9.9
>gi|15841166|ref|NP_336203.1| hypothetical protein MT1747 [Mycobacterium tuberculosis CDC1551]
gi|13881386|gb|AAK46017.1| hypothetical protein MT1747 [Mycobacterium tuberculosis CDC1551]
Length=67
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP 55
MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP
Sbjct 13 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP 67
>gi|31792893|ref|NP_855386.1| hypothetical protein Mb1733c [Mycobacterium bovis AF2122/97]
gi|57116900|ref|YP_177651.1| hypothetical protein Rv1706A [Mycobacterium tuberculosis H37Rv]
gi|121637614|ref|YP_977837.1| hypothetical protein BCG_1745c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
46 more sequence titles
Length=55
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP 55
MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP
Sbjct 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP 55
>gi|240173126|ref|ZP_04751784.1| integral membrane drug efflux protein [Mycobacterium kansasii
ATCC 12478]
Length=531
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/32 (69%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGSL AF G LL AMAPN+ LL FRV QGL
Sbjct 102 MGSLLAFTFGSLLCAMAPNITLLVVFRVVQGL 133
>gi|240172330|ref|ZP_04750989.1| integral membrane drug efflux protein [Mycobacterium kansasii
ATCC 12478]
Length=538
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/32 (63%), Positives = 25/32 (79%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ AF LG LL A+APN++ L AFRV QG+
Sbjct 112 MGSILAFTLGSLLCALAPNILALIAFRVIQGI 143
>gi|15840198|ref|NP_335235.1| drug transporter [Mycobacterium tuberculosis CDC1551]
gi|254231098|ref|ZP_04924425.1| multidrug resistance integral membrane efflux protein emrB [Mycobacterium
tuberculosis C]
gi|13880353|gb|AAK45049.1| drug transporter [Mycobacterium tuberculosis CDC1551]
gi|124600157|gb|EAY59167.1| multidrug resistance integral membrane efflux protein emrB [Mycobacterium
tuberculosis C]
gi|323720814|gb|EGB29884.1| multidrug resistance membrane efflux protein emrB [Mycobacterium
tuberculosis CDC1551A]
Length=545
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG 31
MGS+ AF LG LL A+APN++LL FRV QG
Sbjct 117 MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG 147
>gi|339630852|ref|YP_004722494.1| multidrug resistance integral membrane efflux protein EMRB [Mycobacterium
africanum GM041182]
gi|339330208|emb|CCC25866.1| putative multidrug resistance integral membrane efflux protein
EMRB [Mycobacterium africanum GM041182]
Length=540
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG 31
MGS+ AF LG LL A+APN++LL FRV QG
Sbjct 112 MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG 142
>gi|339297443|gb|AEJ49553.1| drug transporter [Mycobacterium tuberculosis CCDC5180]
Length=545
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG 31
MGS+ AF LG LL A+APN++LL FRV QG
Sbjct 117 MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG 147
>gi|15607923|ref|NP_215297.1| multidrug resistance integral membrane efflux protein EmrB [Mycobacterium
tuberculosis H37Rv]
gi|31791970|ref|NP_854463.1| multidrug resistance integral membrane efflux protein EmrB [Mycobacterium
bovis AF2122/97]
gi|121636706|ref|YP_976929.1| putative multidrug resistance integral membrane efflux protein
emrB [Mycobacterium bovis BCG str. Pasteur 1173P2]
44 more sequence titles
Length=540
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG 31
MGS+ AF LG LL A+APN++LL FRV QG
Sbjct 112 MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG 142
>gi|253797730|ref|YP_003030731.1| multidrug resistance membrane efflux protein emrB [Mycobacterium
tuberculosis KZN 1435]
gi|298524272|ref|ZP_07011681.1| drug transporter [Mycobacterium tuberculosis 94_M4241A]
gi|308231634|ref|ZP_07663900.1| multidrug resistance membrane efflux protein emrB [Mycobacterium
tuberculosis SUMu001]
12 more sequence titles
Length=545
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG 31
MGS+ AF LG LL A+APN++LL FRV QG
Sbjct 117 MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG 147
>gi|289568735|ref|ZP_06448962.1| multidrug resistance membrane efflux protein emrB [Mycobacterium
tuberculosis T17]
gi|289542489|gb|EFD46137.1| multidrug resistance membrane efflux protein emrB [Mycobacterium
tuberculosis T17]
Length=354
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG 31
MGS+ AF LG LL A+APN++LL FRV QG
Sbjct 112 MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG 142
>gi|41406716|ref|NP_959552.1| hypothetical protein MAP0618c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395066|gb|AAS02935.1| hypothetical protein MAP_0618c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=537
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 6/53 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHR 47
MGS+ F LG LL A+APN++LL FRV QG L + V T +AG R
Sbjct 110 MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKR 162
>gi|254818438|ref|ZP_05223439.1| EmrB efflux protein [Mycobacterium intracellulare ATCC 13950]
Length=536
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/54 (47%), Positives = 31/54 (58%), Gaps = 6/54 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHRC 48
MGS+ F LG LL A+APN++LL FRV QG L + V T +AG R
Sbjct 110 MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKRV 163
>gi|254773667|ref|ZP_05215183.1| EmrB efflux protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=520
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 6/53 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHR 47
MGS+ F LG LL A+APN++LL FRV QG L + V T +AG R
Sbjct 93 MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKR 145
>gi|118465955|ref|YP_880004.1| EmrB efflux protein [Mycobacterium avium 104]
gi|118167242|gb|ABK68139.1| EmrB efflux protein [Mycobacterium avium 104]
gi|336458305|gb|EGO37284.1| drug resistance transporter, EmrB/QacA subfamily [Mycobacterium
avium subsp. paratuberculosis S397]
Length=537
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 6/53 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHR 47
MGS+ F LG LL A+APN++LL FRV QG L + V T +AG R
Sbjct 110 MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKR 162
>gi|342862173|ref|ZP_08718815.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
gi|342130251|gb|EGT83571.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
Length=537
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/54 (47%), Positives = 31/54 (58%), Gaps = 6/54 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHRC 48
MGS+ F LG LL A+APN++LL FRV QG L + V T +AG R
Sbjct 110 MGSVLIFTLGSLLCAVAPNILLLILFRVIQGVGGGMLLPLSFVILTREAGPKRV 163
>gi|183983099|ref|YP_001851390.1| integral membrane drug efflux protein, ErmB_1 [Mycobacterium
marinum M]
gi|183176425|gb|ACC41535.1| integral membrane drug efflux protein, ErmB_1 [Mycobacterium
marinum M]
Length=533
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 30/53 (57%), Gaps = 6/53 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL------TMLTVFATGQAGQHR 47
MG++A F LG +L A APN+ LL FRV QG+ ++ T QAG R
Sbjct 101 MGAVATFTLGSMLCASAPNIGLLITFRVVQGIGGGVLGPLVLAIVTHQAGPRR 153
>gi|118616342|ref|YP_904674.1| integral membrane drug efflux protein [Mycobacterium ulcerans
Agy99]
gi|118568452|gb|ABL03203.1| integral membrane drug efflux protein [Mycobacterium ulcerans
Agy99]
Length=553
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ AF LG LL A+APN++ L FRV QG+
Sbjct 112 MGSVLAFALGSLLCALAPNILSLIFFRVLQGV 143
>gi|183984873|ref|YP_001853164.1| integral membrane drug efflux protein [Mycobacterium marinum
M]
gi|183178199|gb|ACC43309.1| integral membrane drug efflux protein [Mycobacterium marinum
M]
Length=539
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ AF LG LL A+APN++ L FRV QG+
Sbjct 112 MGSVLAFALGSLLCALAPNILSLIFFRVLQGV 143
>gi|11498744|ref|NP_069973.1| multidrug resistance protein [Archaeoglobus fulgidus DSM 4304]
gi|2649446|gb|AAB90102.1| multidrug resistance protein [Archaeoglobus fulgidus DSM 4304]
Length=451
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (63%), Gaps = 0/40 (0%)
Query 4 LAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQA 43
L F LG +LSA+ PN +L AFRV QG+ +FAT A
Sbjct 78 LLVFSLGSILSAIPPNAEMLIAFRVLQGVGGAMIFATSVA 117
>gi|240168038|ref|ZP_04746697.1| integral membrane drug efflux protein [Mycobacterium kansasii
ATCC 12478]
Length=480
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/54 (47%), Positives = 31/54 (58%), Gaps = 6/54 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG-----LTMLTV-FATGQAGQHRC 48
+GS+ AF LG LL A+APN+ LL RV QG LT LT+ +AG R
Sbjct 59 IGSVVAFTLGSLLCAVAPNITLLIISRVLQGFGGGILTTLTLTIVNREAGPRRV 112
>gi|183982968|ref|YP_001851259.1| integral membrane drug efflux protein [Mycobacterium marinum
M]
gi|183176294|gb|ACC41404.1| integral membrane drug efflux protein [Mycobacterium marinum
M]
Length=559
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ F L LL A+APN+ LL A RV QGL
Sbjct 104 MGSILVFTLSSLLCAIAPNIALLIASRVVQGL 135
>gi|118616372|ref|YP_904704.1| multidrug resistance integral membrane efflux protein [Mycobacterium
ulcerans Agy99]
gi|118568482|gb|ABL03233.1| multidrug resistance integral membrane efflux protein [Mycobacterium
ulcerans Agy99]
Length=417
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ F LG LL AMA ++ LL AFR QGL
Sbjct 70 MGSVLLFTLGSLLCAMASSITLLVAFRAAQGL 101
>gi|183982530|ref|YP_001850821.1| integral membrane drug efflux protein [Mycobacterium marinum
M]
gi|183175856|gb|ACC40966.1| integral membrane drug efflux protein [Mycobacterium marinum
M]
Length=529
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
+ SL AF G LL A+APN+ L AFRV QGL
Sbjct 88 IASLLAFSAGSLLCALAPNISALIAFRVIQGL 119
>gi|183984924|ref|YP_001853215.1| multidrug resistance integral membrane efflux protein [Mycobacterium
marinum M]
gi|183178250|gb|ACC43360.1| multidrug resistance integral membrane efflux protein [Mycobacterium
marinum M]
Length=545
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ F LG LL AMA ++ LL AFR QGL
Sbjct 114 MGSVLLFTLGSLLCAMASSITLLVAFRAAQGL 145
>gi|343925807|ref|ZP_08765322.1| putative drug resistance efflux protein [Gordonia alkanivorans
NBRC 16433]
gi|343764158|dbj|GAA12248.1| putative drug resistance efflux protein [Gordonia alkanivorans
NBRC 16433]
Length=515
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
Query 3 SLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
SL F LG +L A APN+ +L AFRV QGL
Sbjct 95 SLVLFTLGSILCAFAPNIGMLVAFRVVQGL 124
>gi|342862172|ref|ZP_08718814.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
gi|342130250|gb|EGT83570.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
Length=534
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/32 (57%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
MGS+ AF LG LL A+A N++ L FRV QG+
Sbjct 107 MGSVVAFILGSLLCAVAANILQLIVFRVVQGV 138
>gi|118463591|ref|YP_880005.1| EmrB efflux protein [Mycobacterium avium 104]
gi|118164878|gb|ABK65775.1| EmrB efflux protein [Mycobacterium avium 104]
Length=560
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/32 (54%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL 32
+GS+ AF LG LL A+A N++ L FRV QG+
Sbjct 133 IGSVVAFMLGSLLCALAANILQLIVFRVVQGI 164
>gi|296166470|ref|ZP_06848902.1| drug transporter [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898231|gb|EFG77805.1| drug transporter [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=537
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/53 (40%), Positives = 31/53 (59%), Gaps = 6/53 (11%)
Query 1 MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL------TMLTVFATGQAGQHR 47
+G++ F LG LL A+APN++ L FRV QGL + ++ T +AG R
Sbjct 112 VGAVFLFTLGSLLCALAPNILALIMFRVVQGLGGGMLMPLSSMILTREAGPQR 164
>gi|333986795|ref|YP_004519402.1| EmrB/QacA subfamily drug resistance transporter [Methanobacterium
sp. SWAN-1]
gi|333824939|gb|AEG17601.1| drug resistance transporter, EmrB/QacA subfamily [Methanobacterium
sp. SWAN-1]
Length=465
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 24/37 (65%), Gaps = 0/37 (0%)
Query 7 FKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQA 43
F + LLSA+AP+VV L FR+ QG+ +F TG A
Sbjct 91 FTVASLLSALAPSVVALLLFRILQGIGGAMIFVTGLA 127
Lambda K H
0.329 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129422029068
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40