BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1706A

Length=55
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841166|ref|NP_336203.1|  hypothetical protein MT1747 [Mycoba...   112    1e-23
gi|31792893|ref|NP_855386.1|  hypothetical protein Mb1733c [Mycob...   112    2e-23
gi|240173126|ref|ZP_04751784.1|  integral membrane drug efflux pr...  42.4    0.022
gi|240172330|ref|ZP_04750989.1|  integral membrane drug efflux pr...  40.4    0.088
gi|15840198|ref|NP_335235.1|  drug transporter [Mycobacterium tub...  39.3    0.17 
gi|339630852|ref|YP_004722494.1|  multidrug resistance integral m...  39.3    0.18 
gi|339297443|gb|AEJ49553.1|  drug transporter [Mycobacterium tube...  39.3    0.18 
gi|15607923|ref|NP_215297.1|  multidrug resistance integral membr...  39.3    0.18 
gi|253797730|ref|YP_003030731.1|  multidrug resistance membrane e...  39.3    0.19 
gi|289568735|ref|ZP_06448962.1|  multidrug resistance membrane ef...  38.9    0.24 
gi|41406716|ref|NP_959552.1|  hypothetical protein MAP0618c [Myco...  38.5    0.33 
gi|254818438|ref|ZP_05223439.1|  EmrB efflux protein [Mycobacteri...  38.5    0.34 
gi|254773667|ref|ZP_05215183.1|  EmrB efflux protein [Mycobacteri...  38.5    0.35 
gi|118465955|ref|YP_880004.1|  EmrB efflux protein [Mycobacterium...  38.5    0.36 
gi|342862173|ref|ZP_08718815.1|  EmrB efflux protein [Mycobacteri...  38.1    0.41 
gi|183983099|ref|YP_001851390.1|  integral membrane drug efflux p...  37.7    0.58 
gi|118616342|ref|YP_904674.1|  integral membrane drug efflux prot...  36.6    1.1  
gi|183984873|ref|YP_001853164.1|  integral membrane drug efflux p...  36.6    1.3  
gi|11498744|ref|NP_069973.1|  multidrug resistance protein [Archa...  35.8    1.9  
gi|240168038|ref|ZP_04746697.1|  integral membrane drug efflux pr...  35.8    2.4  
gi|183982968|ref|YP_001851259.1|  integral membrane drug efflux p...  35.4    2.6  
gi|118616372|ref|YP_904704.1|  multidrug resistance integral memb...  35.4    2.7  
gi|183982530|ref|YP_001850821.1|  integral membrane drug efflux p...  35.4    3.0  
gi|183984924|ref|YP_001853215.1|  multidrug resistance integral m...  35.4    3.0  
gi|343925807|ref|ZP_08765322.1|  putative drug resistance efflux ...  35.0    3.2  
gi|342862172|ref|ZP_08718814.1|  EmrB efflux protein [Mycobacteri...  34.3    5.8  
gi|118463591|ref|YP_880005.1|  EmrB efflux protein [Mycobacterium...  33.9    8.4  
gi|296166470|ref|ZP_06848902.1|  drug transporter [Mycobacterium ...  33.5    9.4  
gi|333986795|ref|YP_004519402.1|  EmrB/QacA subfamily drug resist...  33.5    9.9  


>gi|15841166|ref|NP_336203.1| hypothetical protein MT1747 [Mycobacterium tuberculosis CDC1551]
 gi|13881386|gb|AAK46017.1| hypothetical protein MT1747 [Mycobacterium tuberculosis CDC1551]
Length=67

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)

Query  1   MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP  55
           MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP
Sbjct  13  MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP  67


>gi|31792893|ref|NP_855386.1| hypothetical protein Mb1733c [Mycobacterium bovis AF2122/97]
 gi|57116900|ref|YP_177651.1| hypothetical protein Rv1706A [Mycobacterium tuberculosis H37Rv]
 gi|121637614|ref|YP_977837.1| hypothetical protein BCG_1745c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 46 more sequence titles
 Length=55

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)

Query  1   MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP  55
           MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP
Sbjct  1   MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQAGQHRCRTFHVTP  55


>gi|240173126|ref|ZP_04751784.1| integral membrane drug efflux protein [Mycobacterium kansasii 
ATCC 12478]
Length=531

 Score = 42.4 bits (98),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 22/32 (69%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGSL AF  G LL AMAPN+ LL  FRV QGL
Sbjct  102  MGSLLAFTFGSLLCAMAPNITLLVVFRVVQGL  133


>gi|240172330|ref|ZP_04750989.1| integral membrane drug efflux protein [Mycobacterium kansasii 
ATCC 12478]
Length=538

 Score = 40.4 bits (93),  Expect = 0.088, Method: Compositional matrix adjust.
 Identities = 20/32 (63%), Positives = 25/32 (79%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+ AF LG LL A+APN++ L AFRV QG+
Sbjct  112  MGSILAFTLGSLLCALAPNILALIAFRVIQGI  143


>gi|15840198|ref|NP_335235.1| drug transporter [Mycobacterium tuberculosis CDC1551]
 gi|254231098|ref|ZP_04924425.1| multidrug resistance integral membrane efflux protein emrB [Mycobacterium 
tuberculosis C]
 gi|13880353|gb|AAK45049.1| drug transporter [Mycobacterium tuberculosis CDC1551]
 gi|124600157|gb|EAY59167.1| multidrug resistance integral membrane efflux protein emrB [Mycobacterium 
tuberculosis C]
 gi|323720814|gb|EGB29884.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis CDC1551A]
Length=545

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG  31
            MGS+ AF LG LL A+APN++LL  FRV QG
Sbjct  117  MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG  147


>gi|339630852|ref|YP_004722494.1| multidrug resistance integral membrane efflux protein EMRB [Mycobacterium 
africanum GM041182]
 gi|339330208|emb|CCC25866.1| putative multidrug resistance integral membrane efflux protein 
EMRB [Mycobacterium africanum GM041182]
Length=540

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG  31
            MGS+ AF LG LL A+APN++LL  FRV QG
Sbjct  112  MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG  142


>gi|339297443|gb|AEJ49553.1| drug transporter [Mycobacterium tuberculosis CCDC5180]
Length=545

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG  31
            MGS+ AF LG LL A+APN++LL  FRV QG
Sbjct  117  MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG  147


>gi|15607923|ref|NP_215297.1| multidrug resistance integral membrane efflux protein EmrB [Mycobacterium 
tuberculosis H37Rv]
 gi|31791970|ref|NP_854463.1| multidrug resistance integral membrane efflux protein EmrB [Mycobacterium 
bovis AF2122/97]
 gi|121636706|ref|YP_976929.1| putative multidrug resistance integral membrane efflux protein 
emrB [Mycobacterium bovis BCG str. Pasteur 1173P2]
 44 more sequence titles
 Length=540

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG  31
            MGS+ AF LG LL A+APN++LL  FRV QG
Sbjct  112  MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG  142


>gi|253797730|ref|YP_003030731.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis KZN 1435]
 gi|298524272|ref|ZP_07011681.1| drug transporter [Mycobacterium tuberculosis 94_M4241A]
 gi|308231634|ref|ZP_07663900.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis SUMu001]
 12 more sequence titles
 Length=545

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG  31
            MGS+ AF LG LL A+APN++LL  FRV QG
Sbjct  117  MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG  147


>gi|289568735|ref|ZP_06448962.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis T17]
 gi|289542489|gb|EFD46137.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis T17]
Length=354

 Score = 38.9 bits (89),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/31 (65%), Positives = 24/31 (78%), Gaps = 0/31 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG  31
            MGS+ AF LG LL A+APN++LL  FRV QG
Sbjct  112  MGSVLAFTLGSLLCAVAPNILLLIIFRVVQG  142


>gi|41406716|ref|NP_959552.1| hypothetical protein MAP0618c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395066|gb|AAS02935.1| hypothetical protein MAP_0618c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=537

 Score = 38.5 bits (88),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 6/53 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHR  47
            MGS+  F LG LL A+APN++LL  FRV QG      L +  V  T +AG  R
Sbjct  110  MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKR  162


>gi|254818438|ref|ZP_05223439.1| EmrB efflux protein [Mycobacterium intracellulare ATCC 13950]
Length=536

 Score = 38.5 bits (88),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 31/54 (58%), Gaps = 6/54 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHRC  48
            MGS+  F LG LL A+APN++LL  FRV QG      L +  V  T +AG  R 
Sbjct  110  MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKRV  163


>gi|254773667|ref|ZP_05215183.1| EmrB efflux protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=520

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 6/53 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHR  47
            MGS+  F LG LL A+APN++LL  FRV QG      L +  V  T +AG  R
Sbjct  93   MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKR  145


>gi|118465955|ref|YP_880004.1| EmrB efflux protein [Mycobacterium avium 104]
 gi|118167242|gb|ABK68139.1| EmrB efflux protein [Mycobacterium avium 104]
 gi|336458305|gb|EGO37284.1| drug resistance transporter, EmrB/QacA subfamily [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=537

 Score = 38.5 bits (88),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 6/53 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHR  47
            MGS+  F LG LL A+APN++LL  FRV QG      L +  V  T +AG  R
Sbjct  110  MGSVLIFTLGSLLCAVAPNILLLILFRVVQGVGGGMLLPLSFVILTREAGPKR  162


>gi|342862173|ref|ZP_08718815.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
 gi|342130251|gb|EGT83571.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
Length=537

 Score = 38.1 bits (87),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 31/54 (58%), Gaps = 6/54 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG------LTMLTVFATGQAGQHRC  48
            MGS+  F LG LL A+APN++LL  FRV QG      L +  V  T +AG  R 
Sbjct  110  MGSVLIFTLGSLLCAVAPNILLLILFRVIQGVGGGMLLPLSFVILTREAGPKRV  163


>gi|183983099|ref|YP_001851390.1| integral membrane drug efflux protein, ErmB_1 [Mycobacterium 
marinum M]
 gi|183176425|gb|ACC41535.1| integral membrane drug efflux protein, ErmB_1 [Mycobacterium 
marinum M]
Length=533

 Score = 37.7 bits (86),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 23/53 (44%), Positives = 30/53 (57%), Gaps = 6/53 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL------TMLTVFATGQAGQHR  47
            MG++A F LG +L A APN+ LL  FRV QG+       ++    T QAG  R
Sbjct  101  MGAVATFTLGSMLCASAPNIGLLITFRVVQGIGGGVLGPLVLAIVTHQAGPRR  153


>gi|118616342|ref|YP_904674.1| integral membrane drug efflux protein [Mycobacterium ulcerans 
Agy99]
 gi|118568452|gb|ABL03203.1| integral membrane drug efflux protein [Mycobacterium ulcerans 
Agy99]
Length=553

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+ AF LG LL A+APN++ L  FRV QG+
Sbjct  112  MGSVLAFALGSLLCALAPNILSLIFFRVLQGV  143


>gi|183984873|ref|YP_001853164.1| integral membrane drug efflux protein [Mycobacterium marinum 
M]
 gi|183178199|gb|ACC43309.1| integral membrane drug efflux protein [Mycobacterium marinum 
M]
Length=539

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+ AF LG LL A+APN++ L  FRV QG+
Sbjct  112  MGSVLAFALGSLLCALAPNILSLIFFRVLQGV  143


>gi|11498744|ref|NP_069973.1| multidrug resistance protein [Archaeoglobus fulgidus DSM 4304]
 gi|2649446|gb|AAB90102.1| multidrug resistance protein [Archaeoglobus fulgidus DSM 4304]
Length=451

 Score = 35.8 bits (81),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 25/40 (63%), Gaps = 0/40 (0%)

Query  4    LAAFKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQA  43
            L  F LG +LSA+ PN  +L AFRV QG+    +FAT  A
Sbjct  78   LLVFSLGSILSAIPPNAEMLIAFRVLQGVGGAMIFATSVA  117


>gi|240168038|ref|ZP_04746697.1| integral membrane drug efflux protein [Mycobacterium kansasii 
ATCC 12478]
Length=480

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 31/54 (58%), Gaps = 6/54 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQG-----LTMLTV-FATGQAGQHRC  48
            +GS+ AF LG LL A+APN+ LL   RV QG     LT LT+     +AG  R 
Sbjct  59   IGSVVAFTLGSLLCAVAPNITLLIISRVLQGFGGGILTTLTLTIVNREAGPRRV  112


>gi|183982968|ref|YP_001851259.1| integral membrane drug efflux protein [Mycobacterium marinum 
M]
 gi|183176294|gb|ACC41404.1| integral membrane drug efflux protein [Mycobacterium marinum 
M]
Length=559

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+  F L  LL A+APN+ LL A RV QGL
Sbjct  104  MGSILVFTLSSLLCAIAPNIALLIASRVVQGL  135


>gi|118616372|ref|YP_904704.1| multidrug resistance integral membrane efflux protein [Mycobacterium 
ulcerans Agy99]
 gi|118568482|gb|ABL03233.1| multidrug resistance integral membrane efflux protein [Mycobacterium 
ulcerans Agy99]
Length=417

 Score = 35.4 bits (80),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+  F LG LL AMA ++ LL AFR  QGL
Sbjct  70   MGSVLLFTLGSLLCAMASSITLLVAFRAAQGL  101


>gi|183982530|ref|YP_001850821.1| integral membrane drug efflux protein [Mycobacterium marinum 
M]
 gi|183175856|gb|ACC40966.1| integral membrane drug efflux protein [Mycobacterium marinum 
M]
Length=529

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            + SL AF  G LL A+APN+  L AFRV QGL
Sbjct  88   IASLLAFSAGSLLCALAPNISALIAFRVIQGL  119


>gi|183984924|ref|YP_001853215.1| multidrug resistance integral membrane efflux protein [Mycobacterium 
marinum M]
 gi|183178250|gb|ACC43360.1| multidrug resistance integral membrane efflux protein [Mycobacterium 
marinum M]
Length=545

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+  F LG LL AMA ++ LL AFR  QGL
Sbjct  114  MGSVLLFTLGSLLCAMASSITLLVAFRAAQGL  145


>gi|343925807|ref|ZP_08765322.1| putative drug resistance efflux protein [Gordonia alkanivorans 
NBRC 16433]
 gi|343764158|dbj|GAA12248.1| putative drug resistance efflux protein [Gordonia alkanivorans 
NBRC 16433]
Length=515

 Score = 35.0 bits (79),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 0/30 (0%)

Query  3    SLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            SL  F LG +L A APN+ +L AFRV QGL
Sbjct  95   SLVLFTLGSILCAFAPNIGMLVAFRVVQGL  124


>gi|342862172|ref|ZP_08718814.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
 gi|342130250|gb|EGT83570.1| EmrB efflux protein [Mycobacterium colombiense CECT 3035]
Length=534

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 18/32 (57%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            MGS+ AF LG LL A+A N++ L  FRV QG+
Sbjct  107  MGSVVAFILGSLLCAVAANILQLIVFRVVQGV  138


>gi|118463591|ref|YP_880005.1| EmrB efflux protein [Mycobacterium avium 104]
 gi|118164878|gb|ABK65775.1| EmrB efflux protein [Mycobacterium avium 104]
Length=560

 Score = 33.9 bits (76),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 17/32 (54%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL  32
            +GS+ AF LG LL A+A N++ L  FRV QG+
Sbjct  133  IGSVVAFMLGSLLCALAANILQLIVFRVVQGI  164


>gi|296166470|ref|ZP_06848902.1| drug transporter [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898231|gb|EFG77805.1| drug transporter [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=537

 Score = 33.5 bits (75),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 31/53 (59%), Gaps = 6/53 (11%)

Query  1    MGSLAAFKLGWLLSAMAPNVVLLTAFRVPQGL------TMLTVFATGQAGQHR  47
            +G++  F LG LL A+APN++ L  FRV QGL       + ++  T +AG  R
Sbjct  112  VGAVFLFTLGSLLCALAPNILALIMFRVVQGLGGGMLMPLSSMILTREAGPQR  164


>gi|333986795|ref|YP_004519402.1| EmrB/QacA subfamily drug resistance transporter [Methanobacterium 
sp. SWAN-1]
 gi|333824939|gb|AEG17601.1| drug resistance transporter, EmrB/QacA subfamily [Methanobacterium 
sp. SWAN-1]
Length=465

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 24/37 (65%), Gaps = 0/37 (0%)

Query  7    FKLGWLLSAMAPNVVLLTAFRVPQGLTMLTVFATGQA  43
            F +  LLSA+AP+VV L  FR+ QG+    +F TG A
Sbjct  91   FTVASLLSALAPSVVALLLFRILQGIGGAMIFVTGLA  127



Lambda     K      H
   0.329    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129422029068


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40