BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1715
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841175|ref|NP_336212.1| 3-hydroxyacyl-CoA dehydrogenase fam... 591 4e-167
gi|289554512|ref|ZP_06443722.1| 3-hydroxybutyryl-CoA dehydrogena... 588 3e-166
gi|340626722|ref|YP_004745174.1| putative 3-hydroxybutyryl-CoA d... 585 2e-165
gi|240169424|ref|ZP_04748083.1| putative 3-hydroxybutyryl-CoA de... 504 8e-141
gi|289443174|ref|ZP_06432918.1| 3-hydroxybutyryl-CoA dehydrogena... 454 5e-126
gi|289750272|ref|ZP_06509650.1| 3-hydroxybutyryl-CoA dehydrogena... 391 8e-107
gi|31792902|ref|NP_855395.1| 3-hydroxybutyrul-CoA dehydrogenase ... 357 1e-96
gi|167968672|ref|ZP_02550949.1| 3-hydroxybutyryl-CoA dehydrogena... 295 5e-78
gi|332306828|ref|YP_004434679.1| 3-hydroxyacyl-CoA dehydrogenase... 259 4e-67
gi|118592792|ref|ZP_01550181.1| probable 3-hydroxybutyryl-CoA de... 255 6e-66
gi|87122100|ref|ZP_01077984.1| probable 3=hydroxybutyryl-CoA deh... 254 2e-65
gi|170723691|ref|YP_001751379.1| 3-hydroxy-acyl-CoA dehydrogenas... 253 2e-65
gi|289569766|ref|ZP_06449993.1| 3-hydroxybutyryl-CoA dehydrogena... 252 5e-65
gi|158424836|ref|YP_001526128.1| 3-hydroxybutyryl-CoA dehydrogen... 248 6e-64
gi|109898637|ref|YP_661892.1| 3-hydroxyacyl-CoA dehydrogenase [P... 247 1e-63
gi|169631563|ref|YP_001705212.1| 3-hydroxyacyl-CoA dehydrogenase... 244 8e-63
gi|33596719|ref|NP_884362.1| putative 3-hydroxybutyryl-CoA dehyd... 244 1e-62
gi|167644560|ref|YP_001682223.1| 3-hydroxyacyl-CoA dehydrogenase... 243 3e-62
gi|310657510|ref|YP_003935231.1| 3-hydroxyacyl-CoA dehydrogenase... 235 5e-60
gi|187476730|ref|YP_784754.1| 3-hydroxybutyryl-CoA dehydrogenase... 230 2e-58
gi|148551005|ref|YP_001260435.1| 3-hydroxyacyl-CoA dehydrogenase... 228 6e-58
gi|147676608|ref|YP_001210823.1| 3-hydroxybutyryl-CoA dehydrogen... 221 9e-56
gi|163858844|ref|YP_001633142.1| 3-hydroxybutyryl-CoA dehydrogen... 215 5e-54
gi|339441307|ref|YP_004707312.1| 3-hydroxyacyl-CoA dehydrogenase... 214 1e-53
gi|187476826|ref|YP_784850.1| 3-hydroxybutyryl-CoA dehydrogenase... 214 2e-53
gi|72384087|ref|YP_293441.1| 3-hydroxyacyl-CoA dehydrogenase [Ra... 208 1e-51
gi|33595125|ref|NP_882768.1| 3-hydroxybutyryl-CoA dehydrogenase ... 206 5e-51
gi|339442517|ref|YP_004708522.1| 3-hydroxyacyl-CoA dehydrogenase... 205 7e-51
gi|291521589|emb|CBK79882.1| 3-hydroxyacyl-CoA dehydrogenase [Co... 205 8e-51
gi|33599407|ref|NP_886967.1| 3-hydroxybutyryl-CoA dehydrogenase ... 204 1e-50
gi|317401152|gb|EFV81802.1| 3-hydroxybutyryl-CoA dehydrogenase [... 204 1e-50
gi|33591461|ref|NP_879105.1| 3-hydroxybutyryl-CoA dehydrogenase ... 203 2e-50
gi|226310760|ref|YP_002770654.1| 3-hydroxybutyryl-CoA dehydrogen... 202 6e-50
gi|311109105|ref|YP_003981958.1| 3-hydroxybutyryl-CoA dehydrogen... 200 3e-49
gi|334340698|ref|YP_004545678.1| 3-hydroxyacyl-CoA dehydrogenase... 198 9e-49
gi|338782663|gb|EGP47034.1| 3-hydroxybutyryl-CoA dehydrogenase [... 197 1e-48
gi|116620227|ref|YP_822383.1| 3-hydroxyacyl-CoA dehydrogenase [C... 196 4e-48
gi|31792903|ref|NP_855396.1| 3-hydroxybutyrul-CoA dehydrogenase ... 195 7e-48
gi|241763884|ref|ZP_04761928.1| 3-hydroxyacyl-CoA dehydrogenase ... 194 2e-47
gi|293602129|ref|ZP_06684581.1| 3-hydroxybutyryl-CoA dehydrogena... 192 6e-47
gi|121533927|ref|ZP_01665753.1| 3-hydroxybutyryl-CoA dehydrogena... 189 4e-46
gi|145588658|ref|YP_001155255.1| 3-hydroxyacyl-CoA dehydrogenase... 187 1e-45
gi|225351882|ref|ZP_03742905.1| hypothetical protein BIFPSEUDO_0... 186 5e-45
gi|284048150|ref|YP_003398489.1| 3-hydroxyacyl-CoA dehydrogenase... 186 6e-45
gi|333912288|ref|YP_004486020.1| 3-hydroxyacyl-CoA dehydrogenase... 185 7e-45
gi|160901397|ref|YP_001566979.1| NAD-binding 3-hydroxyacyl-CoA d... 184 1e-44
gi|322833070|ref|YP_004213097.1| 3-hydroxyacyl-CoA dehydrogenase... 184 2e-44
gi|300856874|ref|YP_003781858.1| 3-hydroxybutyryl-CoA dehydrogen... 183 3e-44
gi|291523570|emb|CBK81863.1| 3-hydroxyacyl-CoA dehydrogenase [Co... 182 4e-44
gi|319650784|ref|ZP_08004923.1| hypothetical protein HMPREF1013_... 182 5e-44
>gi|15841175|ref|NP_336212.1| 3-hydroxyacyl-CoA dehydrogenase family protein [Mycobacterium
tuberculosis CDC1551]
gi|57116901|ref|YP_177829.1| 3-hydroxybutyryl-CoA dehydrogenase FADB3 [Mycobacterium tuberculosis
H37Rv]
gi|121637623|ref|YP_977846.1| putative 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
68 more sequence titles
Length=304
Score = 591 bits (1524), Expect = 4e-167, Method: Compositional matrix adjust.
Identities = 304/304 (100%), Positives = 304/304 (100%), Gaps = 0/304 (0%)
Query 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS
Sbjct 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
Query 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV
Sbjct 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG
Sbjct 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA
Sbjct 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
Query 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK
Sbjct 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
Query 301 GRGT 304
GRGT
Sbjct 301 GRGT 304
>gi|289554512|ref|ZP_06443722.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
KZN 605]
gi|289439144|gb|EFD21637.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
KZN 605]
Length=303
Score = 588 bits (1517), Expect = 3e-166, Method: Compositional matrix adjust.
Identities = 302/303 (99%), Positives = 303/303 (100%), Gaps = 0/303 (0%)
Query 2 LTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSV 61
+TSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSV
Sbjct 1 MTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSV 60
Query 62 AAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERVE 121
AAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERVE
Sbjct 61 AAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERVE 120
Query 122 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 181
DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN
Sbjct 121 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 180
Query 182 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 241
RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV
Sbjct 181 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 240
Query 242 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEKG 301
IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEKG
Sbjct 241 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEKG 300
Query 302 RGT 304
RGT
Sbjct 301 RGT 303
>gi|340626722|ref|YP_004745174.1| putative 3-hydroxybutyryl-CoA dehydrogenase FADB3 [Mycobacterium
canettii CIPT 140010059]
gi|340004912|emb|CCC44058.1| putative 3-hydroxybutyryl-CoA dehydrogenase FADB3 (beta-hydroxybutyryl-CoA
dehydrogenase) (BHBD) [Mycobacterium canettii
CIPT 140010059]
Length=304
Score = 585 bits (1509), Expect = 2e-165, Method: Compositional matrix adjust.
Identities = 301/304 (99%), Positives = 302/304 (99%), Gaps = 0/304 (0%)
Query 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEIL AAAVEAARVAGAGRGS
Sbjct 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILRAAAVEAARVAGAGRGS 60
Query 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
VAAAADLAA IPDADLVIEAVVENLAVKQE+FERLATLAPDAVLATNTSVLPIGAVTERV
Sbjct 61 VAAAADLAAVIPDADLVIEAVVENLAVKQEIFERLATLAPDAVLATNTSVLPIGAVTERV 120
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG
Sbjct 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA
Sbjct 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
Query 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK
Sbjct 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
Query 301 GRGT 304
GRGT
Sbjct 301 GRGT 304
>gi|240169424|ref|ZP_04748083.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Mycobacterium kansasii
ATCC 12478]
Length=305
Score = 504 bits (1297), Expect = 8e-141, Method: Compositional matrix adjust.
Identities = 254/304 (84%), Positives = 277/304 (92%), Gaps = 0/304 (0%)
Query 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
MLTSHGFSRAAVVGAGLMGRRIAGVLASAGL+VAITDTNAEIL AAA E A V+GA RGS
Sbjct 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLEVAITDTNAEILDAAAAEGAEVSGAERGS 60
Query 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
V A DLAAA+ + DLV+EA+VENLAVK+ELF+RLA+LAP AVLATNTSVLPIGAVTERV
Sbjct 61 VTATGDLAAAVHNTDLVVEAIVENLAVKRELFQRLASLAPHAVLATNTSVLPIGAVTERV 120
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
+DGSRVIGTHFWNPPDLIPVVEVVPS RTAPDT +R+V LL + GK+PVRVGRDVPGFIG
Sbjct 121 DDGSRVIGTHFWNPPDLIPVVEVVPSDRTAPDTVERIVVLLAEAGKMPVRVGRDVPGFIG 180
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NRLQHALWREA+ALVAEGVCD +TVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA
Sbjct 181 NRLQHALWREAMALVAEGVCDAETVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
Query 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
VIPSLN DPHPSPLLR+LVA GQLGARTGHGFLDWP GARE T ARL++HI+AQL +
Sbjct 241 VIPSLNSDPHPSPLLRQLVAEGQLGARTGHGFLDWPPGARERTAARLSRHISAQLDQDPH 300
Query 301 GRGT 304
+G+
Sbjct 301 RKGS 304
>gi|289443174|ref|ZP_06432918.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
T46]
gi|289416093|gb|EFD13333.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
T46]
Length=240
Score = 454 bits (1169), Expect = 5e-126, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS
Sbjct 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
Query 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV
Sbjct 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG
Sbjct 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLA 236
NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLA
Sbjct 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLA 236
>gi|289750272|ref|ZP_06509650.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
T92]
gi|289690859|gb|EFD58288.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
T92]
Length=220
Score = 391 bits (1004), Expect = 8e-107, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 110 VLPIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPV 169
+LPIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPV
Sbjct 26 LLPIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPV 85
Query 170 RVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYI 229
RVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYI
Sbjct 86 RVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYI 145
Query 230 GLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQ 289
GLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQ
Sbjct 146 GLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQ 205
Query 290 HIAAQLQANEKGRGT 304
HIAAQLQANEKGRGT
Sbjct 206 HIAAQLQANEKGRGT 220
>gi|31792902|ref|NP_855395.1| 3-hydroxybutyrul-CoA dehydrogenase [Mycobacterium bovis AF2122/97]
gi|31618493|emb|CAD94445.1| PROBABLE 3-HYDROXYBUTYRYL-COA DEHYDROGENASE FADB3a [FIRST PART]
(BETA-HYDROXYBUTYRYL-COA DEHYDROGENASE) (BHBD) [Mycobacterium
bovis AF2122/97]
Length=187
Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS
Sbjct 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS 60
Query 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV
Sbjct 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERV 120
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG
Sbjct 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
Query 181 NRLQHAL 187
NRLQHAL
Sbjct 181 NRLQHAL 187
>gi|167968672|ref|ZP_02550949.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
H37Ra]
Length=147
Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/147 (99%), Positives = 147/147 (100%), Gaps = 0/147 (0%)
Query 158 VALLTQVGKLPVRVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRL 217
+ALLTQVGKLPVRVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRL
Sbjct 1 MALLTQVGKLPVRVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRL 60
Query 218 ATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPA 277
ATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPA
Sbjct 61 ATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPA 120
Query 278 GAREATTARLAQHIAAQLQANEKGRGT 304
GAREATTARLAQHIAAQLQANEKGRGT
Sbjct 121 GAREATTARLAQHIAAQLQANEKGRGT 147
>gi|332306828|ref|YP_004434679.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332174157|gb|AEE23411.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Glaciecola
sp. 4H-3-7+YE-5]
Length=303
Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/301 (45%), Positives = 194/301 (65%), Gaps = 9/301 (2%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITD------TNAEILHAAAVEAARVAGAGRGSV 61
S+ V+GAGLMG IA V A+ + V + D A+ AA + A + +
Sbjct 5 SQITVIGAGLMGCGIAQVFANKAIQVTLYDPIENARNGAKQKIAANLTALSEPLSSLDYI 64
Query 62 AAAADLAAAIPDADLVIEAVVENLAVKQELF-ERLATLAPDAVLATNTSVLPIGAVTERV 120
+ +L A+ +AD VIEA E L +K+E+F E L APD +LA+NTSV+PI + E +
Sbjct 65 QISDNLETAVANADFVIEAAPEKLPLKREIFTEILRYAAPDTILASNTSVIPIKDIFEGM 124
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
E R++G H+WNPP L+P+VEVV S +TA T DR+++LL K PV + +DVPGF+G
Sbjct 125 ECNGRIVGCHWWNPPYLVPLVEVVQSEKTAIATVDRMMSLLAFADKKPVHIQKDVPGFVG 184
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NR+QHALWREAIAL+ +GVC + +D VV+N+ GLR+ LGP+ENAD +GLDLTL IH+
Sbjct 185 NRMQHALWREAIALINDGVCTAEGIDEVVKNSFGLRMPVLGPIENADLVGLDLTLDIHNV 244
Query 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
++ S+N D PS +L+E VA G+LG ++GHGF W + + L++++ + N K
Sbjct 245 ILASINRDAGPSDILKEKVAKGELGIKSGHGFKHWTEESAQTLRENLSKYLVNTV--NPK 302
Query 301 G 301
G
Sbjct 303 G 303
>gi|118592792|ref|ZP_01550181.1| probable 3-hydroxybutyryl-CoA dehydrogenase FadB3 [Stappia aggregata
IAM 12614]
gi|118434562|gb|EAV41214.1| probable 3-hydroxybutyryl-CoA dehydrogenase FadB3 [Stappia aggregata
IAM 12614]
Length=308
Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 139/292 (48%), Positives = 183/292 (63%), Gaps = 11/292 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITD---TNAEILHAAAVEAARVAGAGR-------GS 60
AV+GAGLMG IA A+AG DV + D ++ E+L + + G R
Sbjct 8 AVLGAGLMGHGIALTFANAGHDVRVYDPLPSSLEVLPGRVLASLEAMGYTRPEIDATLSR 67
Query 61 VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTER 119
+ A A L A + AD V EA E +K+ LF+ + AP A+LA+NTSV+PI +
Sbjct 68 ITAKAGLPACVSGADFVFEAAPEKPDLKRSLFKEVERHAPATAILASNTSVIPITTIMAD 127
Query 120 VEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFI 179
++DG+R +GTH+WNPP +IP+VEV+ + RTA T D+ +ALL VGK PVRV +DV GFI
Sbjct 128 LDDGTRALGTHWWNPPHMIPLVEVIRTQRTAQSTIDKTMALLESVGKTPVRVDKDVAGFI 187
Query 180 GNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHD 239
GNRLQHALWREAI LV GVC + VD+VV + G RL+ LGPL NAD +G DLTL IH+
Sbjct 188 GNRLQHALWREAIYLVESGVCTAEAVDVVVNASFGRRLSVLGPLANADLVGTDLTLDIHE 247
Query 240 AVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHI 291
V+ L++ P PSP LR LV G+LG ++G GF W E R+A H+
Sbjct 248 NVLADLDNRPEPSPYLRRLVEEGKLGMKSGEGFRSWTPKDMEDVRQRVATHL 299
>gi|87122100|ref|ZP_01077984.1| probable 3=hydroxybutyryl-CoA dehydrogenase FadB3 (beta-hydroxybutyrl-CoA
dehydrogenase) (BHBD) [Marinomonas sp. MED121]
gi|86162647|gb|EAQ63928.1| probable 3=hydroxybutyryl-CoA dehydrogenase FadB3 (beta-hydroxybutyrl-CoA
dehydrogenase) (BHBD) [Marinomonas sp. MED121]
Length=304
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/278 (48%), Positives = 184/278 (67%), Gaps = 7/278 (2%)
Query 5 HGFSRAAVVGAGLMGRRIAGVLASAGLDVAITD-TNAEILHAAAVEAARVAGAGRG---- 59
+ AV+GAGLMG IA V AS G +V + D +A ++ A +A G+
Sbjct 2 QNINTIAVIGAGLMGAGIAQVFASQGKEVRVYDPIDASLMSLAKRIGQNLALLGQSQDCL 61
Query 60 -SVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPD-AVLATNTSVLPIGAVT 117
++ ++ LA + DAD+V EA E L +K+ +F L L D A+LA+NTSV+PI +
Sbjct 62 ENLVISSSLADTVRDADIVFEAAPEQLEIKRSIFRELLPLVKDSAILASNTSVIPIKDIG 121
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
+ ++ R++GTH+WNP LIP+VEVV S T+ + +ALL QVGK PV V +DV G
Sbjct 122 QDLDHKGRLVGTHWWNPAYLIPLVEVVQSTTTSDWVVAQTIALLEQVGKKPVHVKKDVAG 181
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
F+GNRLQHALWREAIAL+ +GVCD +TVD+VV+N+ G+RL LGP+EN+D +GLDLTL I
Sbjct 182 FVGNRLQHALWREAIALINDGVCDAETVDIVVKNSFGMRLPVLGPIENSDLVGLDLTLDI 241
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
H+ ++ +N D PS LL+E VA G+LG ++G GF W
Sbjct 242 HNVILKGINRDETPSALLQEKVALGELGMKSGKGFRHW 279
>gi|170723691|ref|YP_001751379.1| 3-hydroxy-acyl-CoA dehydrogenase [Pseudomonas putida W619]
gi|169761694|gb|ACA75010.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Pseudomonas putida
W619]
Length=313
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/304 (47%), Positives = 190/304 (63%), Gaps = 14/304 (4%)
Query 5 HGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAAR------VAGAG- 57
H +A V+GAGLMG IA V A AG V++ D +A L A A +A A
Sbjct 2 HKILQACVIGAGLMGHGIAQVFAQAGHKVSLYDPDAATLDLAPQRVAHNLDQMGIASAPI 61
Query 58 RGSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAV 116
++A DL A+ +AD+VIEAV E L +KQ+LF +A AP VLA+NTSV+PI +
Sbjct 62 LANIALFTDLREAVSNADIVIEAVPERLELKQKLFADIAGFAPPHTVLASNTSVIPITEI 121
Query 117 TERV--EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRD 174
E + E +R++GTH+WNPP L+P+VEVV + T+ + LL +GK PV+V RD
Sbjct 122 GEMLGSEARARLVGTHWWNPPHLVPLVEVVRTEHTSLSVFESTFELLQSLGKSPVKVNRD 181
Query 175 VPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLT 234
V GFIGNRLQHA+WREAI+LV++GVCD +T+D VV+ + G+RL LGP+ENAD +GL LT
Sbjct 182 VAGFIGNRLQHAMWREAISLVSQGVCDAETIDTVVKQSFGMRLPYLGPMENADLVGLQLT 241
Query 235 LAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPA----GAREATTARLAQH 290
+H + P L +D P+PLL L+A G G R+G G W G R+ RL +
Sbjct 242 KLVHQVIFPDLCNDQTPNPLLETLLANGHEGMRSGEGLRSWTKEQADGVRQQLAMRLIES 301
Query 291 IAAQ 294
+AA+
Sbjct 302 VAAK 305
>gi|289569766|ref|ZP_06449993.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
T17]
gi|289543520|gb|EFD47168.1| 3-hydroxybutyryl-CoA dehydrogenase fadB3 [Mycobacterium tuberculosis
T17]
Length=127
Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/127 (98%), Positives = 124/127 (98%), Gaps = 0/127 (0%)
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
FIGNRLQHALWREAIAL GVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI
Sbjct 1 FIGNRLQHALWREAIALSPRGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 60
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQA 297
HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQA
Sbjct 61 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQA 120
Query 298 NEKGRGT 304
NEKGRGT
Sbjct 121 NEKGRGT 127
>gi|158424836|ref|YP_001526128.1| 3-hydroxybutyryl-CoA dehydrogenase [Azorhizobium caulinodans
ORS 571]
gi|158331725|dbj|BAF89210.1| 3-hydroxybutyryl-CoA dehydrogenase [Azorhizobium caulinodans
ORS 571]
Length=365
Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 140/292 (48%), Positives = 185/292 (64%), Gaps = 7/292 (2%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAA---RVAGAGR---GSV 61
+R AV+GAGLMG IA A AG V I + + E A + R+ GA +
Sbjct 71 TRIAVIGAGLMGHGIAQAFAMAGYAVGIYEPDPERRGAIRDQVRANLRLVGADECVADRI 130
Query 62 AAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTERV 120
A LA A+ A +VIEAV E+L +K+ LF + AP A+LA+NTS +PI ++ +
Sbjct 131 AVHGGLADAVAHASVVIEAVPEDLDLKRRLFVEIEAAAPRSALLASNTSAIPITSIMSVL 190
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
+D R +GTH+WNPP L+P+VEVV T + ++ALL +GK PV V +DVPGFIG
Sbjct 191 KDRRRAMGTHWWNPPHLVPLVEVVQGEETGAEEIAAMMALLCSIGKTPVHVRKDVPGFIG 250
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NRLQHA+WREAIALV GVCD +TVD VV+ + G RLA LGPLENAD +G DLTL +H
Sbjct 251 NRLQHAMWREAIALVQSGVCDAETVDTVVKASFGRRLAVLGPLENADLVGTDLTLQVHRT 310
Query 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIA 292
++P L+ P P PLL +LV AG LG ++G GF +W A + LA+H+A
Sbjct 311 ILPDLDGTPGPLPLLEDLVRAGHLGMKSGRGFREWNAESARTVREALARHLA 362
>gi|109898637|ref|YP_661892.1| 3-hydroxyacyl-CoA dehydrogenase [Pseudoalteromonas atlantica
T6c]
gi|109700918|gb|ABG40838.1| 3-hydroxyacyl-CoA dehydrogenase [Pseudoalteromonas atlantica
T6c]
Length=303
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/301 (43%), Positives = 190/301 (64%), Gaps = 9/301 (2%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITD------TNAEILHAAAVEAARVAGAGRGSV 61
S V+GAGLMG IA V A+ + V + D A+ AA + A + + +
Sbjct 5 SHITVIGAGLMGCGIAQVFANKAIQVTLYDPIEGARQTAKQKIAANLTALSQSLSTLDFI 64
Query 62 AAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERV 120
+ DL A+ DAD VIEA E L +K+++F + A PD +LA+NTSV+PI + E +
Sbjct 65 HISDDLETAVADADFVIEAAPEKLPLKRQIFTDILRHARPDTILASNTSVIPIKEIFEGL 124
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
+ R++G H+WNPP L+P+VEVV S +++ T + +++LL GK PV + +DVPGF+G
Sbjct 125 DCNERIVGCHWWNPPYLVPLVEVVQSEQSSLATVESMMSLLAFAGKKPVHIHKDVPGFVG 184
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NR+QHALWREAIAL+ +GVC + +D VV+N+ GLR+ LGP+ENAD +GLDLTL IH+
Sbjct 185 NRMQHALWREAIALINDGVCTAEGIDTVVKNSFGLRMPVLGPIENADLVGLDLTLDIHNV 244
Query 241 VIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEK 300
++ S+N D PS +L+ V G+LG +TG GF W + + L++++ + N K
Sbjct 245 ILASINRDTVPSDILKSKVEKGELGIKTGQGFKRWTDESAQTLRENLSKYLVNTV--NSK 302
Query 301 G 301
G
Sbjct 303 G 303
>gi|169631563|ref|YP_001705212.1| 3-hydroxyacyl-CoA dehydrogenase family protein [Mycobacterium
abscessus ATCC 19977]
gi|169243530|emb|CAM64558.1| 3-hydroxyacyl-CoA dehydrogenase family protein [Mycobacterium
abscessus]
Length=309
Score = 244 bits (624), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 139/298 (47%), Positives = 179/298 (61%), Gaps = 7/298 (2%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSVAAAA----- 65
VVG G MG I+ V A AG V + + N ++ + VA A
Sbjct 9 CVVGGGRMGAGISQVFALAGFTVFVYEVNEQVRTSVVDRVRESLACAELDVAVADRIIIT 68
Query 66 -DLAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTERVEDG 123
DL+AA+ DA V EAV E L +K+E+ +A AP DA+LA+NTSV+PI +
Sbjct 69 DDLSAAVADACFVTEAVGEKLELKREVLAGIAAAAPHDAILASNTSVIPISEIAAGSPAI 128
Query 124 SRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNRL 183
R++GTH+WNP LIP+VEVV + T+ +T R + LL +GK P+ V ++VPGF+GNRL
Sbjct 129 DRIVGTHWWNPAPLIPLVEVVQATGTSVETVSRTMKLLAAIGKKPMHVRKEVPGFVGNRL 188
Query 184 QHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIP 243
QHALWREAIALV EGVCD TVD VV+N+ GLRLA LGPLENAD +GLDLTL IH V+P
Sbjct 189 QHALWREAIALVQEGVCDATTVDDVVKNSFGLRLAVLGPLENADLVGLDLTLDIHRVVVP 248
Query 244 SLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEKG 301
+L+ P+P+L + VA G LG +TG GF W RL H+ L G
Sbjct 249 ALDCQGGPNPVLVDKVARGMLGCKTGEGFRRWSPADIAEMNNRLEGHLVRLLHPRNTG 306
>gi|33596719|ref|NP_884362.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Bordetella parapertussis
12822]
gi|33600485|ref|NP_888045.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella bronchiseptica
RB50]
gi|33568084|emb|CAE31997.1| Putative 3-hydroxybutyryl-CoA dehydrogenase [Bordetella bronchiseptica
RB50]
gi|33573420|emb|CAE37404.1| Putative 3-hydroxybutyryl-CoA dehydrogenase [Bordetella parapertussis]
Length=302
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/291 (51%), Positives = 179/291 (62%), Gaps = 6/291 (2%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVE--AARVAGAGRG---SVA 62
+R AVVGAGLMG IA AG V+I D AE A+A + AA +A G +V
Sbjct 7 TRIAVVGAGLMGHGIAQAFMVAGFPVSIWDP-AEAARASAPQRIAAHLALLGMERPVTVR 65
Query 63 AAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERVED 122
LA+ + + LVIEAV E L +K+EL L L PDA++ATNTSVL I +
Sbjct 66 VCDTLASCVAGSQLVIEAVPEKLELKRELLAVLDELNPDAIVATNTSVLRITEIAADSAR 125
Query 123 GSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNR 182
RV+GTH+WNPP LIPVVEVV RT D A RV L Q GK PV V RDVPGF+GNR
Sbjct 126 PERVVGTHWWNPPYLIPVVEVVRGERTGEDVARRVSVWLAQAGKTPVDVYRDVPGFVGNR 185
Query 183 LQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVI 242
+Q AL REA LV EGVC +T DLV R T G R A +GPL NAD+IGLDLT I D +
Sbjct 186 MQFALLREAAWLVEEGVCSAETADLVARMTFGRRWACVGPLRNADFIGLDLTCDILDYLA 245
Query 243 PSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAA 293
PSL+ LLR+ VA QLGA++G G +W G R+ T A+L +H+ A
Sbjct 246 PSLSDCKQAPRLLRDKVAVRQLGAKSGQGVFEWEEGERDETEAQLLRHLIA 296
>gi|167644560|ref|YP_001682223.1| 3-hydroxyacyl-CoA dehydrogenase [Caulobacter sp. K31]
gi|167346990|gb|ABZ69725.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Caulobacter sp.
K31]
Length=309
Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/297 (47%), Positives = 185/297 (63%), Gaps = 9/297 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGA-----GRGSVAAAA 65
AV+GAGLMG IA V A+ G V + D + L A ++ GA G V AA
Sbjct 11 AVLGAGLMGAGIAKVFAAKGYPVFLFDRD---LDTATSATRQINGAIAHVDGGRDVDAAG 67
Query 66 DLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERVEDGS 124
LA A+ DA V E+V E L VK+ +F LA A DAVLA+NTS +PI + E + +
Sbjct 68 SLAEAVADAAFVFESVSEKLDVKRRIFSALAECARHDAVLASNTSAIPITQIAEGLPCEA 127
Query 125 RVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNRLQ 184
R++G+H+WNP D++P+VEVVP T + ++ LL VGK VR+ RD+PGF+GNRLQ
Sbjct 128 RIVGSHWWNPADVVPLVEVVPGIATDAHHVEAMMQLLISVGKKAVRIDRDIPGFVGNRLQ 187
Query 185 HALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPS 244
ALWREA +LVA GVCD +T+D +V+++ G RL+ LGP+ENAD IGLDLTL I ++P
Sbjct 188 FALWREAQSLVANGVCDAETLDEIVKSSFGPRLSVLGPMENADLIGLDLTLDIMRVILPD 247
Query 245 LNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEKG 301
+++ P P LL VA LG +TG GF +W + +A RLA H+ A A+ G
Sbjct 248 IDNSPEPGRLLTSRVAGQHLGFKTGAGFREWTPASIQACRKRLASHLDAYFSASGTG 304
>gi|310657510|ref|YP_003935231.1| 3-hydroxyacyl-CoA dehydrogenase [Clostridium sticklandii DSM
519]
gi|308824288|emb|CBH20326.1| 3-hydroxyacyl-CoA dehydrogenase precursor [Clostridium sticklandii]
Length=319
Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/295 (42%), Positives = 174/295 (59%), Gaps = 15/295 (5%)
Query 12 VVGAGLMGRRIAGVLAS-AGLDVAITD---TNAEILHAAAVEAARVAGAGRGS------- 60
+ G+GLMG +A V AS L+V I N++I + + G +
Sbjct 18 IYGSGLMGSGLAQVFASDENLNVTICTRNIANSKIHESMSQNLKPFIDKGIYTEDYAINL 77
Query 61 ---VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATL-APDAVLATNTSVLPIGAV 116
V + D A+ +AD +IE + EN+ +KQ LF L + + D +LATNTSV+ I +
Sbjct 78 ISRVRISDDREASAKNADFIIECIPENMELKQNLFAELESYCSEDTILATNTSVMSISEI 137
Query 117 TERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVP 176
+ + RV+G HFWNPP LIP+VEVV T+ +T D + LL + GK P+ V +DVP
Sbjct 138 AMKTKKKDRVVGAHFWNPPYLIPLVEVVKGDETSEETMDLTMKLLKKAGKHPIYVKKDVP 197
Query 177 GFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLA 236
GF+ NRLQHALWREAI++V G+ D KTVD ++ GLRL L P+ENAD +GLDLTL+
Sbjct 198 GFVANRLQHALWREAISIVERGIADAKTVDEALKFGPGLRLPILAPIENADMVGLDLTLS 257
Query 237 IHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHI 291
IH ++ L PS LL+ELV +LG +TG GF W +++ RL++++
Sbjct 258 IHSYILKYLEDSHEPSKLLKELVEKEELGFKTGQGFQSWTKEEADSSRERLSEYL 312
>gi|187476730|ref|YP_784754.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella avium 197N]
gi|115421316|emb|CAJ47821.1| Putative 3-hydroxybutyryl-CoA dehydrogenase [Bordetella avium
197N]
Length=299
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/300 (46%), Positives = 172/300 (58%), Gaps = 23/300 (7%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGS------- 60
+R AV+GAGLMG IA AG +V+I D EAAR + R +
Sbjct 3 ARIAVIGAGLMGHGIAQTFMVAGFEVSIWDP---------AEAARASVKTRIAEHLALMG 53
Query 61 -------VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPI 113
V L A + DL+IEAV E + +K+ L + L P+ ++ATNTSVL I
Sbjct 54 LAHQPVEVRVCDSLEACVEGCDLLIEAVPEKMDIKRALLAAVNALHPECIIATNTSVLRI 113
Query 114 GAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGR 173
+ E RV+GTH+WNPP LIPVVEVV +T+ A +V A LTQ GK PV V R
Sbjct 114 TEIAEGSLHPERVVGTHWWNPPYLIPVVEVVRGEQTSEAVAQQVSAWLTQAGKTPVDVYR 173
Query 174 DVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDL 233
DVPGF+GNR+Q AL REA LV EG+C +TVDLV T G R+A +GPL NAD+IGLDL
Sbjct 174 DVPGFVGNRMQFALMREAAYLVEEGICSAETVDLVASLTFGRRMAAVGPLRNADFIGLDL 233
Query 234 TLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAA 293
I D + PSL+ L RE VAAGQLGA++G G W R+ T +L H+ A
Sbjct 234 VCNIMDYLSPSLSDAKTAPALFRERVAAGQLGAKSGAGVYAWAGSDRDETEKQLLLHLIA 293
>gi|148551005|ref|YP_001260435.1| 3-hydroxyacyl-CoA dehydrogenase [Sphingomonas wittichii RW1]
gi|148503416|gb|ABQ71668.1| 3-hydroxyacyl-CoA dehydrogenase [Sphingomonas wittichii RW1]
Length=299
Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/226 (50%), Positives = 154/226 (69%), Gaps = 1/226 (0%)
Query 67 LAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTERVEDGSR 125
LA A+ DA V EA E L +K+ +F +L AP DA+LA+N+SV+P GA+ E + R
Sbjct 66 LAEAVADAGFVTEAAPEKLPLKRAIFAQLVEAAPADAILASNSSVIPCGAIAEGLPTAHR 125
Query 126 VIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNRLQH 185
++GTH+WNP L+P+VEV+ + T+ +T R + LL VGK P + +D+PGF+ NRLQH
Sbjct 126 IVGTHWWNPATLVPLVEVIQAPGTSEETVARTMELLASVGKRPAHIRKDLPGFVANRLQH 185
Query 186 ALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPSL 245
ALWREAIA+VAEG+CD T+D V+++ GLRL LGPLENAD +GLDLTL IH ++P L
Sbjct 186 ALWREAIAMVAEGICDAATLDDCVKHSFGLRLPVLGPLENADLVGLDLTLDIHRTIMPEL 245
Query 246 NHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHI 291
+ P L + VA G+LG ++G GF W A +A ARL +H+
Sbjct 246 DRHDRPHEFLEQQVAEGRLGFKSGEGFRTWSPEAIQAVRARLVRHL 291
>gi|147676608|ref|YP_001210823.1| 3-hydroxybutyryl-CoA dehydrogenase [Pelotomaculum thermopropionicum
SI]
gi|146272705|dbj|BAF58454.1| 3-hydroxyacyl-CoA dehydrogenase [Pelotomaculum thermopropionicum
SI]
Length=319
Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/302 (43%), Positives = 173/302 (58%), Gaps = 16/302 (5%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAA---------------AVEAARVAG 55
A++GAG MG IA G+ V + D +A L A + V G
Sbjct 8 AIIGAGTMGHSIAAAALQHGVSVRLIDVSAPALETARRKIQSYLASAAGKGGGKGGAVPG 67
Query 56 AGRGSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAV-LATNTSVLPIG 114
G + ++AA + AD+VIEAV E L +K+E+F +L L P +V LATNTS LPI
Sbjct 68 HLAGVLETCMEMAAGVTGADMVIEAVPEKLDLKKEIFAQLDKLCPPSVILATNTSGLPIT 127
Query 115 AVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRD 174
A+ RV+GTHF+ P LIP+VEVV S T+PD A VA L +G+ PV V +D
Sbjct 128 AIASAAARPERVLGTHFYMPAYLIPLVEVVCSDYTSPDVAGDTVAFLQSIGRKPVLVKKD 187
Query 175 VPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLT 234
+PGFIGNRLQHA+ REAI+L+ +G+ + +D V R T+GLR A GPLE D GLD+
Sbjct 188 IPGFIGNRLQHAIAREAISLLQKGIASAQDIDTVARYTLGLRFAHTGPLEQRDLNGLDVH 247
Query 235 LAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQ 294
L + + + SL + P +LRE V +G LG +TG GF DW RE TAR + ++
Sbjct 248 LDVAEYLYQSLENCTQPLAILREKVESGCLGLKTGRGFYDWEGRTREEVTARKNEQMSKV 307
Query 295 LQ 296
L+
Sbjct 308 LE 309
>gi|163858844|ref|YP_001633142.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella petrii DSM 12804]
gi|163262572|emb|CAP44875.1| probable 3-hydroxybutyryl-CoA dehydrogenase [Bordetella petrii]
Length=310
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 132/280 (48%), Positives = 169/280 (61%), Gaps = 10/280 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAA--------VEAARVAGAGRGSVA 62
AVVGAG MG IA + A+ GLDV + D L AA V A R +
Sbjct 9 AVVGAGAMGSGIAALFAAKGLDVVLIDPVPGALERAAGVIDRQLGVYAPGAVAETRRRIR 68
Query 63 AAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERVE 121
A L AA +LVIEAV E L +K+++F RL TL P + ATNTS L I A+ E V
Sbjct 69 MEAGLEAAC-SCNLVIEAVPEKLELKRDVFARLDTLCQPATIFATNTSGLSINAIAEAVT 127
Query 122 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 181
R +GTHF+ P D+IP+VEVV + TAP T + V+A L VGK PV V RD+PGFI N
Sbjct 128 RRERFVGTHFFTPADVIPLVEVVRNDDTAPATVETVMAALRYVGKRPVLVNRDIPGFIAN 187
Query 182 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 241
R+QHAL REA++L+ +G+ + +D VV+ ++G+RLA GPLE D GLD+ AI +
Sbjct 188 RIQHALAREAMSLLEKGIASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHHAIATYL 247
Query 242 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
P L + PSPLL VA+GQ+GA+ G GF WPA RE
Sbjct 248 YPDLENRTTPSPLLAGKVASGQIGAKAGQGFYAWPAERRE 287
>gi|339441307|ref|YP_004707312.1| 3-hydroxyacyl-CoA dehydrogenase [Clostridium sp. SY8519]
gi|338900708|dbj|BAK46210.1| 3-Hydroxyacyl-CoA dehydrogenase [Clostridium sp. SY8519]
Length=309
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/295 (38%), Positives = 166/295 (57%), Gaps = 16/295 (5%)
Query 12 VVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSVAAAADLAAAI 71
+ G G+MG IA V + D +T N A + + V AD+ + +
Sbjct 9 ICGGGMMGCAIAQVFCTIP-DAQVTIWNHREKDIAGMIRQNMKELVAHGVVTEADVDSVV 67
Query 72 PD--------------ADLVIEAVVENLAVKQELFERLATL-APDAVLATNTSVLPIGAV 116
ADLV+E V E + KQ LF L ++ + D + TNTSV+ +
Sbjct 68 ERVVLVTDLNHDRVKAADLVVECVPEVMETKQNLFRDLESITSEDCIYCTNTSVMSPTEI 127
Query 117 TERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVP 176
+E+ + R+ GTHFWNP LIP+VEVV + T + V+ ++T+ GK P+ +DVP
Sbjct 128 SEKCQHKERICGTHFWNPGFLIPLVEVVKTKDTTEEVMQAVMDIMTKAGKKPIYCKKDVP 187
Query 177 GFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLA 236
GF+ NR+QHALWREAI++V +G+ DPKTVD V+ + GLRL LGP+EN+D + LT
Sbjct 188 GFVANRMQHALWREAISIVEQGIADPKTVDDAVKYSFGLRLPQLGPIENSDMVSTTLTYN 247
Query 237 IHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHI 291
IH+ V+ L + PSPLL E++ G+ G ++G GFL W A + +A+ L +++
Sbjct 248 IHNYVLQYLADNHEPSPLLSEMIKEGKEGFKSGEGFLKWDAESVQASKDGLNEYL 302
>gi|187476826|ref|YP_784850.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella avium 197N]
gi|115421412|emb|CAJ47917.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella avium 197N]
Length=310
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/299 (45%), Positives = 174/299 (59%), Gaps = 18/299 (6%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSVAAAADLAAA 70
A++GAG MG IA + AS GL V + D L A R G V A D+AA
Sbjct 9 AIIGAGAMGSGIAALFASRGLPVVLIDPVDGALARAVAIIERQLG-----VYAPNDVAAC 63
Query 71 IP------------DADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVT 117
+ D DLVIEAV E L +K++LF +L L P V ATNTS L I A+
Sbjct 64 LARIRMEPGLQAAADCDLVIEAVPEKLDLKRQLFAQLDALCKPATVFATNTSGLSINAIA 123
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
+ V R +G HF+ P D+IP+VEVV T+ TAD +A+L GK PVRV RD+PG
Sbjct 124 QAVSRRDRFVGMHFFTPADVIPLVEVVRGDETSDATADLAMAVLRAGGKRPVRVNRDIPG 183
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
FI NR+QHAL REA++L+ +GV + +D VV+ ++G+RLA GPLE D GLD+ LAI
Sbjct 184 FIANRIQHALAREAMSLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAI 243
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQ 296
D + L + PS LL+ V AG+LGA+TG GF DWPA RE + +AA +Q
Sbjct 244 ADYLYADLENRVTPSDLLKRKVEAGELGAKTGQGFYDWPAERRERVLREKSAALAALVQ 302
>gi|72384087|ref|YP_293441.1| 3-hydroxyacyl-CoA dehydrogenase [Ralstonia eutropha JMP134]
gi|72123430|gb|AAZ65584.1| 3-hydroxyacyl-CoA dehydrogenase [Ralstonia eutropha JMP134]
Length=304
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/293 (44%), Positives = 171/293 (59%), Gaps = 4/293 (1%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNA---EILHAAAVEAARVAGAGRG-SVAA 63
+R AV+GAGLMG IA ++ DVAI D + E + E + G RG V
Sbjct 9 ARVAVLGAGLMGHGIALAFMTSDFDVAIWDPVSQAREAVRERIAEHLELMGDPRGVDVRV 68
Query 64 AADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERVEDG 123
+ L + D D+V+EA E+++ K+EL + + + ++A+NTSVL I + E D
Sbjct 69 CSTLQDCVRDCDIVVEAAPESVSTKRELIREIDLVNSECIIASNTSVLRITEIAEGSADP 128
Query 124 SRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNRL 183
RV+GTH+WNPP L+P+VEVV T A +V L++ GK PV V RDVPGF+GNR+
Sbjct 129 GRVVGTHWWNPPYLMPLVEVVRGELTREGVAKQVSQWLSKAGKTPVDVYRDVPGFVGNRM 188
Query 184 QHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIP 243
Q AL REA +V +G+C +TVDLV R T G RLA +GPL NAD+IGLDLT AI D + P
Sbjct 189 QFALVREAAHIVEQGICSAETVDLVARLTFGRRLAAVGPLRNADFIGLDLTCAILDYLSP 248
Query 244 SLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQ 296
SL + L RE + AG+ GA+ G G W G R A L H+ Q
Sbjct 249 SLADNKRAPALFREKLDAGKAGAKAGGGVFQWADGERAAAEQHLLNHLMTMHQ 301
>gi|33595125|ref|NP_882768.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella parapertussis
12822]
gi|33565202|emb|CAE36000.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella parapertussis]
Length=354
Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/280 (46%), Positives = 164/280 (59%), Gaps = 10/280 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGA--------GRGSVA 62
AVVGAG MG IA + AS G DV + D A L AA R G +
Sbjct 53 AVVGAGAMGSGIAALFASKGFDVVLIDPMAGALTRAAQVIERQLGVYAPDAIAPAMQRIR 112
Query 63 AAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERVE 121
A L AA A LVIEAV E LA+K+++F RL TL P A+ ATNTS L I + + V
Sbjct 113 MDAGLEAAC-SAQLVIEAVPEKLALKRDIFARLDTLCDPQAIFATNTSGLSINDIAQAVT 171
Query 122 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 181
R +GTHF+ P D+IP+VEVV + T+ T RV+ +L GK PV V +D+PGFI N
Sbjct 172 RRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARVMGMLRAGGKRPVLVRKDIPGFIAN 231
Query 182 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 241
R+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPLE D G+D+ AI +
Sbjct 232 RIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYL 291
Query 242 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
L + PS LL V AG+LGA++G GF WP RE
Sbjct 292 YQDLENRTTPSELLENKVQAGELGAKSGQGFYAWPPERRE 331
>gi|339442517|ref|YP_004708522.1| 3-hydroxyacyl-CoA dehydrogenase [Clostridium sp. SY8519]
gi|338901918|dbj|BAK47420.1| 3-Hydroxyacyl-CoA dehydrogenase [Clostridium sp. SY8519]
Length=313
Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/306 (39%), Positives = 163/306 (54%), Gaps = 16/306 (5%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTN--------AEILHAAAVEAARVAGAGRG 59
AV+GAG M IA + A+ G V I D N EI+ A
Sbjct 4 KHVAVLGAGKMSLGIAQLFATKGYPVKIVDINNDRSRYDPYEIIRGNLQVLAENDALEES 63
Query 60 SVAAAADLAAAIPD-------ADLVIEAVVENLAVKQELFERLATLAPD-AVLATNTSVL 111
+ A D + + AD+V EA++E L +KQE F ++ + P+ +LA+NTS L
Sbjct 64 EIPAILDQISIVETLEEIRDFADIVFEAIIEVLDIKQEWFRKMDEILPEHVILASNTSAL 123
Query 112 PIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRV 171
I A+ E+ R+IGTH+WNP LIP+VEVV + A DT R LL GK PV V
Sbjct 124 SITAIAEKSVHRERIIGTHYWNPAYLIPLVEVVKTEYIAEDTVTRTCELLKGAGKHPVVV 183
Query 172 GRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGL 231
+D PGFI NR+QHAL+REA+ ++ +G+ P+ VD ++ G+RL P+E D G+
Sbjct 184 QKDAPGFIANRMQHALFREALYIIEQGIAKPEDVDDAIKYGFGMRLGIAAPIEVMDMGGM 243
Query 232 DLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHI 291
DLT IH + P LN+ PS LL + +AAG LG +TG G +WP A + L +
Sbjct 244 DLTYNIHKYLFPYLNNSTEPSKLLTDAIAAGNLGFKTGKGIEEWPPEAVKKANTELETGL 303
Query 292 AAQLQA 297
L+A
Sbjct 304 IRVLKA 309
>gi|291521589|emb|CBK79882.1| 3-hydroxyacyl-CoA dehydrogenase [Coprococcus catus GD/7]
Length=315
Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/276 (42%), Positives = 162/276 (59%), Gaps = 18/276 (6%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLD-VAIT-------DTNAEILHAAA--VEAARVAGAG 57
+ + G G+MG IA VLA GLD V IT D A+I + VE V A
Sbjct 5 KKILICGGGMMGSAIAQVLA--GLDDVTITVYDKFPVDIEAKIRNNMKLLVEKEIVTPAD 62
Query 58 RGSVAAAADL-----AAAIPDADLVIEAVVENLAVKQELFERL-ATLAPDAVLATNTSVL 111
V + + + +ADLV+E V+E++ +KQ+LF +L ++ D + TNTSV+
Sbjct 63 VDKVISKISFTQDIESEGVKNADLVVECVLEDMQLKQDLFAQLEGIVSEDTIFCTNTSVM 122
Query 112 PIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRV 171
++ + + R++GTHFWNP LIP+VEVV + T + + V+ +LT+ GK PV
Sbjct 123 SPTEISAKCKHKERLVGTHFWNPGFLIPLVEVVRTEATTDEVVETVMDMLTRAGKKPVLC 182
Query 172 GRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGL 231
+DVPGFI NR+QHALWREAI++V G+ D KTVD + + GLRL L PL N+D +G
Sbjct 183 KKDVPGFIANRMQHALWREAISIVERGIADAKTVDDACKYSFGLRLPYLPPLVNSDMVGT 242
Query 232 DLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGAR 267
LT IHD V+ L PSPLL+E++ G++G R
Sbjct 243 QLTYNIHDYVLKDLEDSHEPSPLLKEMIDEGKMGFR 278
>gi|33599407|ref|NP_886967.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella bronchiseptica
RB50]
gi|33567003|emb|CAE30916.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella bronchiseptica
RB50]
Length=310
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 163/280 (59%), Gaps = 10/280 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGA--------GRGSVA 62
AVVGAG MG IA + AS G DV + D L AA R G +
Sbjct 9 AVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAAQVIERQLGVYAPDAIAPAMQRIR 68
Query 63 AAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERVE 121
A L AA A LVIEAV E LA+K+++F RL TL P A+ ATNTS L I + + V
Sbjct 69 MDAGLEAAC-SAQLVIEAVPEKLALKRDIFARLDTLCDPQAIFATNTSGLSINDIAQAVT 127
Query 122 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 181
R +GTHF+ P D+IP+VEVV + T+ T RV+ +L GK PV V +D+PGFI N
Sbjct 128 RRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARVMGMLRAGGKRPVLVRKDIPGFIAN 187
Query 182 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 241
R+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPLE D G+D+ AI +
Sbjct 188 RIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYL 247
Query 242 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
L + PS LL V AG+LGA++G GF WP RE
Sbjct 248 YQDLENRTTPSELLENKVQAGELGAKSGQGFYAWPPERRE 287
>gi|317401152|gb|EFV81802.1| 3-hydroxybutyryl-CoA dehydrogenase [Achromobacter xylosoxidans
C54]
Length=311
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/279 (46%), Positives = 164/279 (59%), Gaps = 8/279 (2%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITD-TNAEILHAAAVEAARVAGAGRGSVAAAADLAA 69
AV+GAG MG IA + AS GLDV + D + + A AV ++ G V A
Sbjct 9 AVIGAGAMGSGIAALFASKGLDVVLVDPMDGALDRARAVIERQLNVYAPGQVDAVMQRIR 68
Query 70 AIP------DADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERVED 122
P DLVIEAV ENL +K+ LF +L L P A+ ATNTS L I A+ V
Sbjct 69 MAPGLDAAASCDLVIEAVPENLELKRGLFAQLDALCKPAAIFATNTSGLSINAIASAVAR 128
Query 123 GSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNR 182
R +GTHF+ P D+IP+VEVV + T+ DT RV+A L GK PV V +D+PGFI NR
Sbjct 129 RDRFVGTHFFTPADVIPLVEVVRNDATSEDTVARVMATLRLGGKRPVLVRQDIPGFIANR 188
Query 183 LQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVI 242
+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPLE D G+D+ AI +
Sbjct 189 IQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYLY 248
Query 243 PSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
L + PS LL+ V GQLGA++G GF W A RE
Sbjct 249 KDLENRTEPSELLKSKVENGQLGAKSGQGFYTWSAERRE 287
>gi|33591461|ref|NP_879105.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella pertussis Tohama
I]
gi|33571103|emb|CAE40597.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella pertussis Tohama
I]
gi|332380862|gb|AEE65709.1| 3-hydroxybutyryl-CoA dehydrogenase [Bordetella pertussis CS]
Length=310
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 163/280 (59%), Gaps = 10/280 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGA--------GRGSVA 62
AVVGAG MG IA + AS G DV + D L AA R G +
Sbjct 9 AVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAAQVIERQLGVYAPDAIAPAMQRIR 68
Query 63 AAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERVE 121
A L AA A LVIEAV E LA+K+++F RL TL P A+ ATNTS L I + + V
Sbjct 69 MDAGLEAAC-SAQLVIEAVPEKLALKRDIFARLDTLCDPQAIFATNTSGLSINDIAQAVT 127
Query 122 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 181
R +GTHF+ P D+IP+VEVV + T+ T RV+ +L GK PV V +D+PGFI N
Sbjct 128 RRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARVMDMLRAGGKRPVLVRKDIPGFIAN 187
Query 182 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 241
R+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPLE D G+D+ AI +
Sbjct 188 RIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYL 247
Query 242 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
L + PS LL V AG+LGA++G GF WP RE
Sbjct 248 YQDLENRTTPSELLENKVQAGELGAKSGQGFYAWPPERRE 287
>gi|226310760|ref|YP_002770654.1| 3-hydroxybutyryl-CoA dehydrogenase [Brevibacillus brevis NBRC
100599]
gi|226093708|dbj|BAH42150.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Brevibacillus brevis
NBRC 100599]
Length=310
Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/280 (41%), Positives = 162/280 (58%), Gaps = 15/280 (5%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEIL--------HAAAVEAARVAGAGRGSVA 62
AV+G+G+MG IA + A AG V++ D E L H+ ++ A A + VA
Sbjct 6 AVIGSGVMGHGIAQLFALAGFRVSLYDLQEEFLLKARASIEHSLSLLVAEGVIADQSRVA 65
Query 63 A------AADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGA 115
A DL AA+ A+++ EA+ E + +K ELFE+L A PDA++A+NTS I
Sbjct 66 ALEHIVLTTDLQAAVSSAEIITEAIPEVVELKWELFEKLEHYAKPDAIIASNTSTFSIAR 125
Query 116 VTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDV 175
+ E+ R I THF+NP L+P+VEVV +TA + + + L+ ++GK PV + +DV
Sbjct 126 LIEKATTPQRFIITHFFNPAQLVPLVEVVKHEKTALEVIQKTMQLMEEIGKCPVLLKKDV 185
Query 176 PGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTL 235
PGFI NRLQ AL REA L+AEGV D +D V++N IG R A +GP+E AD+ GLD
Sbjct 186 PGFIANRLQTALVREAFHLLAEGVADAAQIDTVMKNGIGFRWAFVGPIETADFGGLDTWK 245
Query 236 AIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
+ D + P LN ++ E VA G LG +TG G +
Sbjct 246 RVMDNLAPELNGSTKAPAIMEERVAEGNLGTKTGAGIYSY 285
>gi|311109105|ref|YP_003981958.1| 3-hydroxybutyryl-CoA dehydrogenase [Achromobacter xylosoxidans
A8]
gi|310763794|gb|ADP19243.1| 3-hydroxybutyryl-CoA dehydrogenase 3 [Achromobacter xylosoxidans
A8]
Length=311
Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/279 (44%), Positives = 162/279 (59%), Gaps = 8/279 (2%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGA-GRGSVAAAADLAA 69
A+VGAG MG IA + AS GL+V + D L A R G+V A
Sbjct 9 AIVGAGAMGSGIAALFASKGLNVVLIDPMEGALERALQTIDRQLNVYAPGNVQEAMQRIQ 68
Query 70 AIP------DADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTERVED 122
P ++DLVIEAV ENL +K+ +F +L +L P + ATNTS L I A+ V
Sbjct 69 VAPGLEAACNSDLVIEAVPENLELKRGIFAKLDSLCPAHTLFATNTSGLSINAIASAVVR 128
Query 123 GSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNR 182
R +GTHF+ P D+IP+VEVV + T+ DT RV+A L GK PV V +D+PGFI NR
Sbjct 129 RDRFVGTHFFTPADVIPLVEVVRNDGTSEDTVARVMATLRHAGKRPVLVRQDIPGFIANR 188
Query 183 LQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVI 242
+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPLE D G+D+ AI +
Sbjct 189 IQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYLY 248
Query 243 PSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
L PS LL+ V +GQ+GA++G GF W RE
Sbjct 249 KDLESRTEPSELLKSKVESGQIGAKSGQGFYTWSPERRE 287
>gi|334340698|ref|YP_004545678.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Desulfotomaculum
ruminis DSM 2154]
gi|334092052|gb|AEG60392.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Desulfotomaculum
ruminis DSM 2154]
Length=315
Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/280 (42%), Positives = 156/280 (56%), Gaps = 15/280 (5%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILH------AAAVEAARVAGAGRGS---- 60
+G G MG IA V A+AG V + + + A+E R G
Sbjct 11 CTLGTGTMGFGIALVFAAAGYPVRMFGRSEASIQRGLQNIKEALETFRENGLVDAEDIPR 70
Query 61 ----VAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATL-APDAVLATNTSVLPIGA 115
V L A+ D D VIEA+ ENLAVKQ++F ++ L +P+ +LATNTS L +
Sbjct 71 ILERVKGVTILEEAVKDVDFVIEAIAENLAVKQQVFAQIEQLCSPETILATNTSGLSPTS 130
Query 116 VTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDV 175
+ + R I HFWNP LIP+VEVVPS T+ D L+ ++GK PV + R+
Sbjct 131 IAGALAYKERFIAAHFWNPAQLIPLVEVVPSKYTSQPVVDATWQLMEKIGKKPVALNREA 190
Query 176 PGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTL 235
GFIGNRLQ AL REA+ +V G+ + VD V+ ++G RLAT GPLE+AD GLD+
Sbjct 191 LGFIGNRLQLALLREALYIVESGIASKEAVDTTVKYSLGRRLATTGPLESADLGGLDIFY 250
Query 236 AIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
I +I L H+P SPLL+E + G+LGA+TG G DW
Sbjct 251 NISTYLIQDLCHNPGVSPLLKEAMEKGKLGAKTGSGLYDW 290
>gi|338782663|gb|EGP47034.1| 3-hydroxybutyryl-CoA dehydrogenase [Achromobacter xylosoxidans
AXX-A]
Length=311
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/284 (43%), Positives = 167/284 (59%), Gaps = 18/284 (6%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSVAAAADLAAA 70
AV+GAG MG IA + AS GLDV + D A++ AR + +V A ++AAA
Sbjct 9 AVIGAGAMGSGIAALFASKGLDVVLVDP-----MEGALDRARAVIERQLNVYAPGEVAAA 63
Query 71 IPDADL------------VIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVT 117
+ + VIEAV ENL +K+ LF +L L P+A+ ATNTS L I A+
Sbjct 64 LRRIRMAPALDAAAACDLVIEAVPENLELKRGLFAQLDALCKPEAIFATNTSGLSINAIA 123
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
V R +GTHF+ P D+IP+VEVV + T+ +T RV+A L GK PV V +D+PG
Sbjct 124 SAVARRDRFVGTHFFTPADVIPLVEVVRNDATSEETVARVMATLRLGGKRPVLVRQDIPG 183
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
FI NR+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPL+ D G+D+ AI
Sbjct 184 FIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLKQRDMNGIDVHYAI 243
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
+ L + PS LL+ V GQLGA++G GF W RE
Sbjct 244 ASYLYKDLENRTEPSELLKSKVENGQLGAKSGQGFYTWSPERRE 287
>gi|116620227|ref|YP_822383.1| 3-hydroxyacyl-CoA dehydrogenase [Candidatus Solibacter usitatus
Ellin6076]
gi|116223389|gb|ABJ82098.1| 3-hydroxyacyl-CoA dehydrogenase [Candidatus Solibacter usitatus
Ellin6076]
Length=309
Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/279 (44%), Positives = 159/279 (57%), Gaps = 10/279 (3%)
Query 7 FSRAAVVGAGLMGRRIAGVLASAGLDVAI---TDTNAEILHAAAVEAARV------AGAG 57
F + V+G G+MG IA LA G+ + T AE A A RV A A
Sbjct 3 FGKGCVIGTGMMGPGIALTLALGGVQTTLLSRTPAGAERGVAEARRLGRVLVEQELAAAL 62
Query 58 RGSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAV 116
+A + D +I AD+VIE+ E + KQELF R+ +A DAVLA+NTS L + A+
Sbjct 63 DLDIAGSTDFEYSIGQADIVIESGPEEMGWKQELFARMDRVARADAVLASNTSGLSVTAI 122
Query 117 TERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVP 176
+V+ THFWNPP L+P+VE++ T+P A V LLT GK PV V D P
Sbjct 123 AAECARPEQVLATHFWNPPHLVPLVEIIQGRATSPAAAAAVRELLTACGKTPVVVKLDRP 182
Query 177 GFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLA 236
G +GNRLQ AL REA +VAEG+ D + VD VV+N +G+R+ G E+ D GLDL L
Sbjct 183 GQLGNRLQMALVREAANIVAEGIADAEAVDSVVKNGLGIRMPAYGIFEHMDVAGLDLALR 242
Query 237 IHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
+ + V P L ++ LRELV G+LGA+TG GF DW
Sbjct 243 VMEHVTPDLYNEGRAPEFLRELVREGKLGAKTGRGFYDW 281
>gi|31792903|ref|NP_855396.1| 3-hydroxybutyrul-CoA dehydrogenase [Mycobacterium bovis AF2122/97]
gi|31618494|emb|CAD94446.1| PROBABLE 3-HYDROXYBUTYRYL-COA DEHYDROGENASE FADB3b [SECOND PART]
(BETA-HYDROXYBUTYRYL-COA DEHYDROGENASE) (BHBD) [Mycobacterium
bovis AF2122/97]
Length=97
Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/97 (99%), Positives = 97/97 (100%), Gaps = 0/97 (0%)
Query 208 VVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGAR 267
+VRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGAR
Sbjct 1 MVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGAR 60
Query 268 TGHGFLDWPAGAREATTARLAQHIAAQLQANEKGRGT 304
TGHGFLDWPAGAREATTARLAQHIAAQLQANEKGRGT
Sbjct 61 TGHGFLDWPAGAREATTARLAQHIAAQLQANEKGRGT 97
>gi|241763884|ref|ZP_04761928.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Acidovorax delafieldii
2AN]
gi|241366852|gb|EER61274.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Acidovorax delafieldii
2AN]
Length=327
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/289 (40%), Positives = 164/289 (57%), Gaps = 11/289 (3%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNA---EILHAAAVEAARVAGAGRGSVAAA 64
+R VVG G MG +A VLA G V + D +A E+L A +A A + + A
Sbjct 9 ARTVVVGGGTMGADVAVVLARGGAQVTVVDPHATRRELLLPHI--AKELAAASQATHAGP 66
Query 65 ADLAAAIPDAD-----LVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTE 118
+ A++ D D LV+E + E LA KQ+LF L T+AP +AVLA+N+S PI A+ +
Sbjct 67 VQVCASLQDVDWSGVVLVVECITEQLAAKQKLFAELETVAPPNAVLASNSSGFPISAIAQ 126
Query 119 RVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGF 178
+ R++G HF+ P L+P+VEVV R+ P + A + G +PV V +D PGF
Sbjct 127 GLATAQRMLGLHFFMPAHLVPLVEVVLGERSDPALGTWLHAFMRGCGSVPVLVKKDKPGF 186
Query 179 IGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIH 238
+ NR+QHAL REA AL+ EG+ P+ VD VR G R GP+ D+ G+++ A
Sbjct 187 LANRMQHALSREAFALIDEGIASPEDVDAAVRFGFGFRFLAAGPVLQRDHAGIEVHTAAA 246
Query 239 DAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARL 287
+ P+L++ P+ LR+ V GQLG +TG GF DWP ++A AR
Sbjct 247 ATMYPTLSNTDVPAQALRDKVTQGQLGMKTGKGFFDWPEDRKQAERARY 295
>gi|293602129|ref|ZP_06684581.1| 3-hydroxybutyryl-CoA dehydrogenase [Achromobacter piechaudii
ATCC 43553]
gi|292819465|gb|EFF78494.1| 3-hydroxybutyryl-CoA dehydrogenase [Achromobacter piechaudii
ATCC 43553]
Length=311
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 118/280 (43%), Positives = 161/280 (58%), Gaps = 10/280 (3%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITD--------TNAEILHAAAVEAARVAGAGRGSVA 62
AV+GAG MG IA + AS GL++ + D A I V A +
Sbjct 9 AVIGAGAMGSGIAALFASKGLNIVLIDPMPGALDRARAVIDRQLNVYAPDQVQESLARIR 68
Query 63 AAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVTERVE 121
+ L AA ++LVIEAV ENL +K+ LF +L L P + ATNTS L I A+ V
Sbjct 69 MESSLQAA-STSELVIEAVPENLELKRGLFAQLDALCPAHTLFATNTSGLSINAIASAVA 127
Query 122 DGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGN 181
R +GTHF+ P D+IP+VEVV + T+ T +V+A L GK PV V +D+PGFI N
Sbjct 128 RRDRFVGTHFFTPADVIPLVEVVRNDETSEATVAQVMATLRFAGKRPVLVRQDIPGFIAN 187
Query 182 RLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAV 241
R+QHAL REAI+L+ +GV + +D VV+ ++G+RLA GPLE D G+D+ AI +
Sbjct 188 RIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVHYAIASYL 247
Query 242 IPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
L + PS LL+ V +GQ+GA++G GF W RE
Sbjct 248 YKDLENRTEPSDLLKSKVDSGQIGAKSGQGFYTWSPERRE 287
>gi|121533927|ref|ZP_01665753.1| 3-hydroxybutyryl-CoA dehydrogenase [Thermosinus carboxydivorans
Nor1]
gi|121307438|gb|EAX48354.1| 3-hydroxybutyryl-CoA dehydrogenase [Thermosinus carboxydivorans
Nor1]
Length=318
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/278 (40%), Positives = 154/278 (56%), Gaps = 15/278 (5%)
Query 13 VGAGLMGRRIAGVLASAGLDVAITDTNAEILH--AAAVEAARVAGAGRGSVAAA------ 64
+G G MG A A AG +V + +A + ++++AA G V A
Sbjct 12 LGTGTMGFGTALAFAMAGYNVRMFGRSAASIERGFSSIKAALATYREHGLVEEADIPVIL 71
Query 65 ------ADLAAAIPDADLVIEAVVENLAVKQELFERLATL-APDAVLATNTSVLPIGAVT 117
L A AD VIE++ ENL K+E+F ++ L AP + ATNTS L A+
Sbjct 72 NRIKGVTTLEEAAEGADFVIESIAENLETKREVFAKMDKLCAPHTIFATNTSGLSPTAIA 131
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
E +E + + HFWNPP L+P+VEVVP TA +T D L+ ++GK PV + R+ G
Sbjct 132 EAIERKDKFVVAHFWNPPHLVPLVEVVPGKHTAQETVDLTWKLMEKIGKKPVALNREALG 191
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
FIGNRLQ AL REA+ +V G+ + VD ++ ++G RLAT GPLE+AD GLD+ I
Sbjct 192 FIGNRLQLALLREALYIVESGIASKEAVDTTMKYSLGRRLATTGPLESADLGGLDIFYNI 251
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
++ L + SPLL+E V G LGA+TG G DW
Sbjct 252 SSYLLADLCNSTEISPLLKEAVEKGTLGAKTGTGLYDW 289
>gi|145588658|ref|YP_001155255.1| 3-hydroxyacyl-CoA dehydrogenase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047064|gb|ABP33691.1| 3-hydroxyacyl-CoA dehydrogenase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length=313
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/316 (36%), Positives = 164/316 (52%), Gaps = 25/316 (7%)
Query 1 MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITD---------------TNAEILHA 45
ML + ++ +VG G MG +A V A G V + + T ++ +
Sbjct 1 MLFTPAETKVVIVGGGTMGADVAAVCARGGCAVQVVEPTTERRALLPDYFVNTMTDLGYE 60
Query 46 AAVEAARVAGAGRGSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVL 104
+ VAG+ D A D DLVIE V E L +KQELF +L A P+AVL
Sbjct 61 HRIHLLTVAGS-----LEEVDWA----DVDLVIECVPERLDIKQELFAKLEKYAKPEAVL 111
Query 105 ATNTSVLPIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQV 164
A+N++ PI + ++ +R+IG HF+ P L+P VEVV +T+P D + L+T
Sbjct 112 ASNSTSFPISEIASGLKTAARMIGLHFFMPAHLVPCVEVVYGEKTSPMVGDSLSRLMTAC 171
Query 165 GKLPVRVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLE 224
G +PV V +D+PGF+ NRLQHAL REA A+V G+C P+ +D VR G R GP
Sbjct 172 GMVPVTVKKDLPGFLANRLQHALSREAFAMVDAGICTPEDIDKAVRFGFGFRYIAAGPAM 231
Query 225 NADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATT 284
D+ GL++ A + PSLN+ P + L + V +G+ G +TG GF W A +A
Sbjct 232 QRDHAGLEVHAAGGAKIYPSLNNSPTIAKCLSDRVESGKFGMKTGEGFFPWTAETIKAER 291
Query 285 ARLAQHIAAQLQANEK 300
R + A L+ +K
Sbjct 292 ERYQDALRAGLKIIQK 307
>gi|225351882|ref|ZP_03742905.1| hypothetical protein BIFPSEUDO_03485 [Bifidobacterium pseudocatenulatum
DSM 20438]
gi|225157129|gb|EEG70468.1| hypothetical protein BIFPSEUDO_03485 [Bifidobacterium pseudocatenulatum
DSM 20438]
Length=346
Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/281 (38%), Positives = 152/281 (55%), Gaps = 16/281 (5%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAA----VEAARVAGAGR-------- 58
A +G+G MG A A AG V + D + E+L +A A AG
Sbjct 32 ANIGSGTMGHATALQFAVAGYPVKLVDCSEELLKRGMEHIRADAEEFAQAGLLRAEDTVD 91
Query 59 ---GSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIG 114
++ D + DAD +IE++VE L VKQ +++++ AP DA+ ATNTS L
Sbjct 92 DVLSRISTYTDYENGVSDADFIIESIVEKLDVKQSVWQQIEQYAPVDAIFATNTSGLGPT 151
Query 115 AVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRD 174
A+ ++ R + HFWNP L+P+VEVVP TAP+ D L+ +GK P ++ ++
Sbjct 152 AIQSVLKHPERFVVAHFWNPAHLMPLVEVVPGKDTAPEVVDTTFDLMASIGKKPAKIKKE 211
Query 175 VPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLT 234
GF+GNR+Q AL REA ++ EG+ D +TVD VVR ++G R +GP+ +AD GLD
Sbjct 212 SLGFVGNRMQLALLREAFNIINEGIADAETVDTVVRYSLGRRWNLVGPVASADLGGLDTF 271
Query 235 LAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
I + +++ PS LL V G LG +TG GF +W
Sbjct 272 YNISTYLFKDMDNGTEPSLLLAWKVQDGNLGTKTGRGFYEW 312
>gi|284048150|ref|YP_003398489.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Acidaminococcus
fermentans DSM 20731]
gi|283952371|gb|ADB47174.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Acidaminococcus
fermentans DSM 20731]
Length=462
Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/288 (38%), Positives = 164/288 (57%), Gaps = 8/288 (2%)
Query 2 LTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSV 61
L + + + GAG MG +A + A G +V + + L A + + A A + +
Sbjct 164 LLTMDIKKITIAGAGTMGYSMADIFAQNGYEVTLWNHRQPTLDKAKTKIS-PAAAEKITF 222
Query 62 AAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLA-PDAVLATNTSVLPIGAVTERV 120
+ D A DL++E++ ENL +K + + +++ LA P+ ++ATNTS L I + E V
Sbjct 223 TTSLD---AFRGRDLIVESIAENLDIKLDFYRQMSLLADPETIIATNTSGLSINKLAEAV 279
Query 121 EDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIG 180
R +G H++NPP LIP++E++ +A+T PD A + L +GK P V +DVPGF
Sbjct 280 TGPERFLGMHWFNPPTLIPLIEIIKNAKTRPDVARTIYDLSLAIGKKPALVEKDVPGFAA 339
Query 181 NRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDA 240
NR+Q A+ REA+ALV +GV + D V++ +G R A LGPLE D+ GLD+ I +
Sbjct 340 NRIQLAVLREALALVRDGVVSVEGADAVMKYGLGFRWACLGPLETVDFGGLDVFYHISEY 399
Query 241 VIPSLNHDPHPSP-LLRELVAAGQLGARTGHGFLDWPA-GAREATTAR 286
++P L D H P LL + AG+ G + G GF D+ AREAT AR
Sbjct 400 LMPDL-EDSHAVPELLAKKFQAGEYGVKNGKGFYDYAGDKAREATAAR 446
>gi|333912288|ref|YP_004486020.1| 3-hydroxyacyl-CoA dehydrogenase [Delftia sp. Cs1-4]
gi|333742488|gb|AEF87665.1| 3-hydroxyacyl-CoA dehydrogenase [Delftia sp. Cs1-4]
Length=320
Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 115/290 (40%), Positives = 157/290 (55%), Gaps = 13/290 (4%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAE----ILHAAAVEAARVAGAGRGSVAA 63
+R VVG G MG +A VLA G V + D A +L A+E +A AG A+
Sbjct 9 ARTVVVGGGTMGADVAVVLARGGALVTVVDPGAARRELLLQHIAIE---LATAGFARCAS 65
Query 64 AADLAAAIPDAD-----LVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVT 117
+ AA+ D LV+E + E L KQ LF L AP DAVLA+N+S PI A+
Sbjct 66 QVSVCAALEDVAWDGVALVVECITERLDAKQALFAELEAHAPADAVLASNSSGFPISAIA 125
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
+ R++G HF+ P L+P+VEVV R+ P + A + G +PV V +D PG
Sbjct 126 SGLPTAQRMLGLHFFMPAHLVPLVEVVLGERSDPALGQWLHAFMRGCGSVPVLVKKDKPG 185
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
F+ NR+QHAL REA AL+ EG+ P+ VD VR G R GP+ D+ G+++ A
Sbjct 186 FLANRMQHALSREAFALIDEGIASPEDVDAAVRFGFGFRFLAAGPVLQRDHAGIEVHCAA 245
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARL 287
+ P+L++ P+ LR+ VA G LG +TG GF DWP R A AR
Sbjct 246 AATMYPTLSNTDVPAQALRDRVARGDLGMKTGKGFFDWPEERRLAERARY 295
>gi|160901397|ref|YP_001566979.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Delftia acidovorans
SPH-1]
gi|160366981|gb|ABX38594.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Delftia acidovorans
SPH-1]
Length=320
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/290 (40%), Positives = 157/290 (55%), Gaps = 13/290 (4%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAE----ILHAAAVEAARVAGAGRGSVAA 63
+R VVG G MG +A VLA G V + D A +L A+E +A AG A+
Sbjct 9 ARTVVVGGGTMGADVAVVLARGGALVTVVDPGAARRELLLQHIAIE---LATAGFARCAS 65
Query 64 AADLAAAIPDAD-----LVIEAVVENLAVKQELFERLATLAP-DAVLATNTSVLPIGAVT 117
+ AA+ D LV+E + E L KQ LF L AP DAVLA+N+S PI A+
Sbjct 66 QVSVCAALEDVAWDGVALVVECITERLDAKQALFAELEAHAPADAVLASNSSGFPISAIA 125
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
+ R++G HF+ P L+P+VEVV R+ P + A + G +PV V +D PG
Sbjct 126 GGLPTAQRMLGLHFFMPAHLVPLVEVVLGERSDPALGQWLHAFMRGCGSVPVLVKKDKPG 185
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
F+ NR+QHAL REA AL+ EG+ P+ VD VR G R GP+ D+ G+++ A
Sbjct 186 FLANRMQHALSREAFALIDEGIASPEDVDAAVRFGFGFRFLAAGPVLQRDHAGIEVHCAA 245
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARL 287
+ P+L++ P+ LR+ VA G LG +TG GF DWP R A AR
Sbjct 246 AATMYPTLSNTDVPAQALRDRVARGDLGMKTGKGFFDWPEDRRLAERARY 295
>gi|322833070|ref|YP_004213097.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Rahnella
sp. Y9602]
gi|321168271|gb|ADW73970.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Rahnella
sp. Y9602]
Length=297
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/275 (37%), Positives = 156/275 (57%), Gaps = 1/275 (0%)
Query 8 SRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSVAAAADL 67
++ AV+GAG MG RIA V A++G VA+ LH AA + SV +
Sbjct 4 TQVAVIGAGTMGARIAAVFAASGFKVALYSRTENSLHNAAKVIDSIDAGLTASVTFTTSM 63
Query 68 AAAIPDADLVIEAVVENLAVKQELFERLAT-LAPDAVLATNTSVLPIGAVTERVEDGSRV 126
A + A +V E + E LA+KQ++F+ + ++ D +L TNTS +P+G + + SR
Sbjct 64 AECLKGAKIVSENIAEVLALKQQIFQEIEKHVSDDCLLTTNTSSVPVGQIASVLAVPSRF 123
Query 127 IGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNRLQHA 186
IG H++NP D++P+VE+V +T +T + AL Q+GK V + ++ PGFI NRLQ+A
Sbjct 124 IGLHWFNPADVMPMVEIVCGPQTHENTRQQADALCQQLGKQTVTIHKEAPGFIVNRLQYA 183
Query 187 LWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPSLN 246
+ REA+ LV G+ + VD V++T+ R + +GPL+ D+ GLD + ++P+L+
Sbjct 184 MLREALHLVTAGIASIEDVDFAVQSTLAPRWSAMGPLKLMDFAGLDTVKNVAAILLPALS 243
Query 247 HDPHPSPLLRELVAAGQLGARTGHGFLDWPAGARE 281
D P L + G LG +TG GF W A E
Sbjct 244 RDDELPPWLLAQIEQGNLGTKTGAGFYPWTAQTIE 278
>gi|300856874|ref|YP_003781858.1| 3-hydroxybutyryl-CoA dehydrogenase [Clostridium ljungdahlii DSM
13528]
gi|300436989|gb|ADK16756.1| 3-hydroxybutyryl-CoA dehydrogenase [Clostridium ljungdahlii DSM
13528]
Length=313
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/307 (37%), Positives = 166/307 (55%), Gaps = 15/307 (4%)
Query 11 AVVGAGLMGRRIAGVLASAGLDVAIT-DTNAEI---LHAAAVEAARVAGAGRGSVAAAAD 66
AV+G G MG IA + A AGL+V + +NA + + + AG+ S +
Sbjct 7 AVLGTGTMGHGIALLSAKAGLNVVMYGRSNASLERGFNNIKSSLNSLKAAGKLSDEKCEE 66
Query 67 LAAAIP----------DADLVIEAVVENLAVKQELFERLATL-APDAVLATNTSVLPIGA 115
+ + I DAD VIEA+ ENL +KQ++F +L + +PD VL +NTS L A
Sbjct 67 ILSKIKGVKTIQEAAKDADFVIEALAENLELKQDIFRQLDEICSPDVVLTSNTSGLSPTA 126
Query 116 VTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDV 175
+ + + RV HFWNPP LIP+VEVVP +T+ DT ++ + +GK VR+ ++
Sbjct 127 IAKNTKYPERVAIAHFWNPPQLIPLVEVVPGEKTSQDTMKIIMNWVEFIGKKAVRMEKEC 186
Query 176 PGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTL 235
GFIGNRLQ AL REA+ +V +G P+ VD + G RL GPL +AD GLD+
Sbjct 187 LGFIGNRLQLALLREALYIVEQGWAKPEEVDKAMEYGHGRRLPVTGPLCSADLGGLDIFN 246
Query 236 AIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQL 295
I + L + PS L+++ V AG LG+++G GF +W E + + L
Sbjct 247 NISSYLFKDLCNYTKPSKLMQDKVEAGNLGSKSGQGFYNWTPEVLEKKQKERTEVLLDFL 306
Query 296 QANEKGR 302
+ + +G+
Sbjct 307 ERDSRGK 313
>gi|291523570|emb|CBK81863.1| 3-hydroxyacyl-CoA dehydrogenase [Coprococcus catus GD/7]
Length=323
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/296 (36%), Positives = 156/296 (53%), Gaps = 15/296 (5%)
Query 12 VVGAGLMGRRIAGVLASAGLDVAITDTN----------AEILHAAAVEAARVAGAGRGSV 61
+ GAG MG +A + A G V I D EI A+ VEA + +
Sbjct 11 IAGAGTMGASMAQIFAQYGYTVIIYDAFEAGLERGKHLVEINQASLVEAGDITAEQSAEI 70
Query 62 AAAADLAAAI---PDADLVIEAVVENLAVKQELFERL-ATLAPDAVLATNTSVLPIGAVT 117
I D D+++E+V+E L VKQ+ + + A ++PD +LATNTS L I +
Sbjct 71 KTKLSFTGDINGLKDCDIIVESVLERLDVKQDFWVKAEAVVSPDCILATNTSGLSINKIF 130
Query 118 ERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPG 177
+D +R G H++NPP ++P++EV+ + T + AD V L ++GK P+ V +D G
Sbjct 131 ANCKDKTRACGMHWFNPPHIVPLIEVINNDETKQEIADTVYQLSLKIGKKPIYVKKDALG 190
Query 178 FIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAI 237
FIGNR+Q A+ REA+ +V +G+ D K VD ++ +G R A LGP E D GLD+ I
Sbjct 191 FIGNRIQAAILREAVYIVEQGIGDYKDVDGAMKYGLGFRYACLGPCEVVDQGGLDVHHHI 250
Query 238 HDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPA-GAREATTARLAQHIA 292
+ L+ +PS + AG G +TG GF D+ A +A AR A ++A
Sbjct 251 ATYLWEDLSDAKYPSGEFEAIYQAGNYGVKTGKGFYDYSGDKADKAIEARDAMYLA 306
>gi|319650784|ref|ZP_08004923.1| hypothetical protein HMPREF1013_01529 [Bacillus sp. 2_A_57_CT2]
gi|317397641|gb|EFV78340.1| hypothetical protein HMPREF1013_01529 [Bacillus sp. 2_A_57_CT2]
Length=313
Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/284 (39%), Positives = 155/284 (55%), Gaps = 15/284 (5%)
Query 7 FSRAAVVGAGLMGRRIAGVLASAGLDVA---ITD-------TNA----EILHAAAVEAAR 52
R AV+G G MG IA A AGL V I+D TN E++ + +
Sbjct 1 MERIAVLGCGTMGHSIALNAAWAGLSVKMQGISDADLEQGWTNMLKKLEVMLNNGILSDS 60
Query 53 VAGAGRGSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERL-ATLAPDAVLATNTSVL 111
A + ++ + A+ DA VIEAV EN+ +K +LF+RL A APD +LA+NTS L
Sbjct 61 EAAQIQENIKMTVSVEEAVTDATFVIEAVPENIQLKIDLFKRLDALCAPDVILASNTSGL 120
Query 112 PIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRV 171
+ R + THFWNP LIP+VEVV +T + +R LL Q+ K P+ V
Sbjct 121 SPTEIASETVYPERTVVTHFWNPAHLIPLVEVVRGEKTGDEAVERSFQLLKQMKKKPIEV 180
Query 172 GRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGL 231
+++PGF+GNRLQ+AL+REA L+ EG+ + +D V IG RL GPL AD GL
Sbjct 181 KKEIPGFVGNRLQYALFREAQYLLEEGIASKEDIDDAVTYGIGRRLPVSGPLMTADMGGL 240
Query 232 DLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDW 275
D+ AI D + L+ P+L++LV +LG ++G G+ W
Sbjct 241 DVFSAISDYLFQHLSSAEESLPILKKLVEEQKLGDKSGEGYYKW 284
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 511987440690
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40