BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1717 Length=116 Score E Sequences producing significant alignments: (Bits) Value gi|15608855|ref|NP_216233.1| hypothetical protein Rv1717 [Mycoba... 232 1e-59 gi|289447332|ref|ZP_06437076.1| conserved hypothetical protein [... 231 2e-59 gi|289750274|ref|ZP_06509652.1| conserved hypothetical protein [... 183 9e-45 gi|289761873|ref|ZP_06521251.1| conserved hypothetical protein [... 161 3e-38 gi|148822923|ref|YP_001287677.1| hypothetical protein TBFG_11732... 161 4e-38 gi|240169426|ref|ZP_04748085.1| hypothetical protein MkanA1_0894... 158 3e-37 gi|118592790|ref|ZP_01550179.1| hypothetical protein SIAM614_290... 97.1 8e-19 gi|332306830|ref|YP_004434681.1| Cupin 2 conserved barrel domain... 92.4 2e-17 gi|109898639|ref|YP_661894.1| cupin 2 barrel domain-containing p... 92.0 2e-17 gi|94310846|ref|YP_584056.1| hypothetical protein Rmet_1908 [Cup... 91.7 3e-17 gi|91786271|ref|YP_547223.1| cupin 2 barrel-domain containing pr... 90.5 7e-17 gi|73539671|ref|YP_300038.1| hypothetical protein Reut_B5851 [Ra... 90.5 7e-17 gi|339323032|ref|YP_004681926.1| outer membrane protein [Cupriav... 89.7 1e-16 gi|239813145|ref|YP_002942055.1| cupin [Variovorax paradoxus S11... 87.4 6e-16 gi|194292153|ref|YP_002008060.1| hypothetical protein RALTA_B140... 85.9 2e-15 gi|116695731|ref|YP_841307.1| hypothetical protein H16_B1795 [Ra... 85.5 3e-15 gi|148551007|ref|YP_001260437.1| cupin 2 domain-containing prote... 85.1 3e-15 gi|154248661|ref|YP_001419619.1| cupin 2 domain-containing prote... 82.8 2e-14 gi|11498807|ref|NP_070036.1| hypothetical protein AF1208 [Archae... 80.9 6e-14 gi|310657508|ref|YP_003935229.1| hypothetical protein CLOST_0194... 80.5 8e-14 gi|148554696|ref|YP_001262278.1| cupin 2 domain-containing prote... 73.9 8e-12 gi|169631565|ref|YP_001705214.1| hypothetical protein MAB_4491c ... 70.1 1e-10 gi|87122103|ref|ZP_01077987.1| hypothetical protein MED121_04138... 64.3 6e-09 gi|339441758|ref|YP_004707763.1| hypothetical protein CXIVA_0694... 62.4 2e-08 gi|302334979|ref|YP_003800186.1| Cupin 2 conserved barrel domain... 61.6 3e-08 gi|298247653|ref|ZP_06971458.1| Cupin 2 conserved barrel domain ... 51.2 6e-05 gi|339442015|ref|YP_004708020.1| hypothetical protein CXIVA_0951... 48.1 5e-04 gi|89068635|ref|ZP_01156027.1| probable transcriptional regulato... 43.1 0.013 gi|188991333|ref|YP_001903343.1| hypothetical protein xccb100_19... 40.0 0.13 gi|21231679|ref|NP_637596.1| hypothetical protein XCC2241 [Xanth... 40.0 0.13 gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacte... 39.3 0.21 gi|294628566|ref|ZP_06707126.1| cupin domain-containing protein ... 38.9 0.26 gi|21220231|ref|NP_626010.1| hypothetical protein SCO1737 [Strep... 38.5 0.31 gi|325918155|ref|ZP_08180307.1| hypothetical protein, contains d... 38.5 0.34 gi|297198633|ref|ZP_06916030.1| conserved hypothetical protein [... 38.1 0.39 gi|29833099|ref|NP_827733.1| hypothetical protein SAV_6557 [Stre... 38.1 0.42 gi|284028193|ref|YP_003378124.1| Cupin 2 conserved barrel domain... 37.7 0.63 gi|228925026|ref|ZP_04088155.1| hypothetical protein bthur0011_5... 37.4 0.81 gi|254459919|ref|ZP_05073335.1| transcriptional regulator, XRE f... 37.0 0.88 gi|146305877|ref|YP_001186342.1| cupin 2 domain-containing prote... 37.0 1.0 gi|329939184|ref|ZP_08288558.1| hypothetical protein SGM_4050 [S... 37.0 1.0 gi|325920169|ref|ZP_08182129.1| mannose-6-phosphate isomerase [X... 36.6 1.2 gi|335433854|ref|ZP_08558669.1| cupin [Halorhabdus tiamatea SARL... 36.6 1.4 gi|58582291|ref|YP_201307.1| hypothetical protein XOO2668 [Xanth... 36.6 1.4 gi|84624171|ref|YP_451543.1| hypothetical protein XOO_2514 [Xant... 36.2 1.5 gi|21388673|dbj|BAC00796.1| unnamed protein product [Rhodococcus... 35.8 2.1 gi|76803030|ref|YP_331125.1| hypothetical protein NP4800A [Natro... 35.8 2.2 gi|110669076|ref|YP_658887.1| hypothetical protein HQ3192A [Halo... 35.8 2.4 gi|291280384|ref|YP_003497219.1| hypothetical protein DEFDS_2012... 35.8 2.5 gi|337266922|ref|YP_004610977.1| Cupin 2 barrel domain-containin... 35.4 3.0 >gi|15608855|ref|NP_216233.1| hypothetical protein Rv1717 [Mycobacterium tuberculosis H37Rv] gi|15841177|ref|NP_336214.1| hypothetical protein MT1756 [Mycobacterium tuberculosis CDC1551] gi|31792905|ref|NP_855398.1| hypothetical protein Mb1745 [Mycobacterium bovis AF2122/97] 62 more sequence titles Length=116 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 116/116 (100%), Positives = 116/116 (100%), Gaps = 0/116 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY Sbjct 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA 116 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA Sbjct 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA 116 >gi|289447332|ref|ZP_06437076.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289420290|gb|EFD17491.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=116 Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/116 (99%), Positives = 116/116 (100%), Gaps = 0/116 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRT+RFWVGLSVYRPGGTAEPAPTREETVY Sbjct 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTQRFWVGLSVYRPGGTAEPAPTREETVY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA 116 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA Sbjct 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA 116 >gi|289750274|ref|ZP_06509652.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289690861|gb|EFD58290.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=113 Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/116 (83%), Positives = 98/116 (85%), Gaps = 3/116 (2%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY Sbjct 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA 116 VVLDGELVVTVDGAETVLGWLDSVHLA+ H R+ L PVAEVA Sbjct 61 VVLDGELVVTVDGAETVLGWLDSVHLARRTAIDTHRTIVRRCCWL---RRPVAEVA 113 >gi|289761873|ref|ZP_06521251.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289709379|gb|EFD73395.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=106 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY Sbjct 2 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 61 Query 61 VVLDGELVVTVDGAETVLG 79 VVLDGELVVTVDGAETVLG Sbjct 62 VVLDGELVVTVDGAETVLG 80 >gi|148822923|ref|YP_001287677.1| hypothetical protein TBFG_11732 [Mycobacterium tuberculosis F11] gi|253799244|ref|YP_003032245.1| hypothetical protein TBMG_02278 [Mycobacterium tuberculosis KZN 1435] gi|254550728|ref|ZP_05141175.1| hypothetical protein Mtube_09764 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 9 more sequence titles Length=105 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY Sbjct 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 Query 61 VVLDGELVVTVDGAETVLG 79 VVLDGELVVTVDGAETVLG Sbjct 61 VVLDGELVVTVDGAETVLG 79 >gi|240169426|ref|ZP_04748085.1| hypothetical protein MkanA1_08944 [Mycobacterium kansasii ATCC 12478] Length=116 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/111 (70%), Positives = 86/111 (78%), Gaps = 0/111 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M +TR SQAP Y A H +V T+RLQG EAG TERFWVGLS YRPGG AE A REETVY Sbjct 1 MNVTRVSQAPEYTAALHRDVLTVRLQGHEAGHTERFWVGLSTYRPGGIAEKAAAREETVY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 VV+DGELVVT G ETVLG DSVH AKGE+RS+ NR+ R A+LLV +AHP Sbjct 61 VVIDGELVVTAGGTETVLGRFDSVHFAKGEVRSLENRSGRAAVLLVAIAHP 111 >gi|118592790|ref|ZP_01550179.1| hypothetical protein SIAM614_29036 [Stappia aggregata IAM 12614] gi|118434560|gb|EAV41212.1| hypothetical protein SIAM614_29036 [Stappia aggregata IAM 12614] Length=116 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/111 (45%), Positives = 66/111 (60%), Gaps = 0/111 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M + R A Y AP H V +RLQG E G E WVGLS + PGG A P T E VY Sbjct 1 MHIKRFEDAEPYEAPNHRAVVGLRLQGFEPGGPENQWVGLSQFLPGGGAGPDSTPFEKVY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 V+L+GE+ V G++T+L DS +A GE+R+I NR++ +LV + +P Sbjct 61 VILEGEMTVEAHGSKTILKKYDSCTIAPGEVRTIENRSNHTCTMLVVIPYP 111 >gi|332306830|ref|YP_004434681.1| Cupin 2 conserved barrel domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174159|gb|AEE23413.1| Cupin 2 conserved barrel domain protein [Glaciecola sp. 4H-3-7+YE-5] Length=115 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/111 (42%), Positives = 66/111 (60%), Gaps = 0/111 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M +TR +A Y AP H ++ +R+QG + T+ WVGLS + PGG A + E +Y Sbjct 1 MNVTRIEEAKPYQAPGHFDMRGLRIQGWDVSDTKNVWVGLSHFLPGGGAAGDVSPVEKIY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 VVLDG + VT D E +LG LDS H+ RSI N+T++ +LV + +P Sbjct 61 VVLDGTISVTHDDKEVILGPLDSCHIPPNAQRSILNKTNKMVSMLVIMPYP 111 >gi|109898639|ref|YP_661894.1| cupin 2 barrel domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109700920|gb|ABG40840.1| Cupin 2, conserved barrel [Pseudoalteromonas atlantica T6c] Length=114 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/111 (42%), Positives = 66/111 (60%), Gaps = 0/111 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M +T+ A Y AP H +V +RLQG +A TE FWVGLS + PGG A+ + E VY Sbjct 1 MNVTKLEDAMPYQAPGHFDVCGLRLQGWDASDTENFWVGLSHFLPGGGAQGDVSPLEKVY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 VVL+G + +T D E +LG LDS + R++ N+T+ +LV + +P Sbjct 61 VVLEGSVSITHDNKEVILGPLDSCRIPPNAKRTLINKTNNTVSMLVIMPYP 111 >gi|94310846|ref|YP_584056.1| hypothetical protein Rmet_1908 [Cupriavidus metallidurans CH34] gi|93354698|gb|ABF08787.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length=116 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/113 (43%), Positives = 64/113 (57%), Gaps = 0/113 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M TR +QAP Y H + +RLQG EAG +E W+G+SV PGG + E Y Sbjct 1 MNTTRFAQAPAYFPANHEGMHCLRLQGHEAGPSEALWMGVSVILPGGHTSMDASPVEKHY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVA 113 VVL+GE+ + G LG DSV LA GE R + N +R A+LL+ + +P A Sbjct 61 VVLEGEVCIRTPGESVTLGQFDSVRLAPGEGRQVSNPGNRPAMLLLAMPYPKA 113 >gi|91786271|ref|YP_547223.1| cupin 2 barrel-domain containing protein [Polaromonas sp. JS666] gi|91695496|gb|ABE42325.1| Cupin 2, conserved barrel [Polaromonas sp. JS666] Length=112 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/111 (42%), Positives = 65/111 (59%), Gaps = 0/111 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M +TR S AP Y P H + +RLQG EAG +E W+G+S PGG + E Y Sbjct 1 MNVTRISGAPAYFPPHHEAMHCLRLQGHEAGLSESVWLGMSYLLPGGGTSLDASSVEKHY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 VVL+GE+ V+ + + VL DS LA GE R++ NRT+ A +L+ + +P Sbjct 61 VVLEGEVTVSTEADQVVLKKYDSCRLAAGEKRALANRTNFVACILLAMPYP 111 >gi|73539671|ref|YP_300038.1| hypothetical protein Reut_B5851 [Ralstonia eutropha JMP134] gi|72123008|gb|AAZ65194.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length=113 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/113 (42%), Positives = 63/113 (56%), Gaps = 0/113 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M TR +QAP Y P H + +RLQG EAG +E W+G+SV PGG + E Y Sbjct 1 MNTTRFAQAPAYFPPNHDGMHCLRLQGHEAGPSESLWMGVSVLLPGGHTSMDASTVEKHY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVA 113 VVL+GE+ + L DSV LA GE R + N +R A+LL+ + +P A Sbjct 61 VVLEGEVCIRTSDEAVTLQQFDSVRLAPGEARQVSNPGNRPAMLLLAMPYPKA 113 >gi|339323032|ref|YP_004681926.1| outer membrane protein [Cupriavidus necator N-1] gi|338169640|gb|AEI80694.1| hypothetical protein CNE_2c17380 [Cupriavidus necator N-1] Length=113 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/111 (41%), Positives = 62/111 (56%), Gaps = 0/111 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M TR ++AP Y P H + +RLQG EAG +E W+G+S PGG + E Y Sbjct 1 MNTTRFAKAPAYFPPNHEGMHCLRLQGHEAGPSEALWMGVSALLPGGHTSMDASPVEKHY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 VVL+GE+ + LG DSV LA GE R + N +R A+LL+ + +P Sbjct 61 VVLEGEVCIATPDERVTLGQFDSVRLAPGEARQVSNPGNRPAMLLLAMPYP 111 >gi|239813145|ref|YP_002942055.1| cupin [Variovorax paradoxus S110] gi|239799722|gb|ACS16789.1| Cupin 2 conserved barrel domain protein [Variovorax paradoxus S110] Length=120 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/120 (41%), Positives = 72/120 (60%), Gaps = 4/120 (3%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M +TR S+AP Y AP H ++ +RLQG+EAG + + W+G+S PGG + E +Y Sbjct 1 MHVTRFSEAPHYEAPNHFDMRCLRLQGKEAGPSTQMWMGMSQILPGGRTGLDGSPMEKLY 60 Query 61 VVLDGELVVT--VDGA--ETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAEVA 116 +VL+G+L V +DGA E VLG DS A GE R + NR++R L+ + + + V A Sbjct 61 LVLEGQLHVVGELDGAHQEEVLGPYDSCRFAPGEKRQLENRSNRPVLVALVMPNSVPPAA 120 >gi|194292153|ref|YP_002008060.1| hypothetical protein RALTA_B1407 [Cupriavidus taiwanensis LMG 19424] gi|193226057|emb|CAQ72004.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length=113 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/112 (43%), Positives = 65/112 (59%), Gaps = 2/112 (1%) Query 1 MKLTRASQAPRYVAPAHHE-VSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETV 59 M +TR +QAP Y PA+HE + +RLQG EAG W+G+SV PGG + E Sbjct 1 MNITRFAQAPAYF-PANHEGMHCLRLQGHEAGPAASLWLGVSVLLPGGHTALDASAVEKH 59 Query 60 YVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 YVVL+GE+ + +LG DSV LA GE R + N +R A+LL+ + P Sbjct 60 YVVLEGEVCIRTTEQTALLGQFDSVRLAPGESRQVSNPGNRAAMLLLAMPFP 111 >gi|116695731|ref|YP_841307.1| hypothetical protein H16_B1795 [Ralstonia eutropha H16] gi|113530230|emb|CAJ96577.1| conserved hypothetical protein [Ralstonia eutropha H16] Length=113 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/114 (43%), Positives = 68/114 (60%), Gaps = 6/114 (5%) Query 1 MKLTRASQAPRYVAPAHHE-VSTMRLQGREAGRTERFWVGLSVYRPGG--TAEPAPTREE 57 M TR +QAP Y PA+HE + +RLQG EAG +E W+G+SV PGG + + AP E Sbjct 1 MNTTRFAQAPAYF-PANHEGMHCLRLQGHEAGPSEALWMGVSVLLPGGHTSMDAAPV--E 57 Query 58 TVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 YVVL+GE+ + L DSV +A GE R + N +R A+LL+ + +P Sbjct 58 KHYVVLEGEVCIATPDERVTLAQFDSVRVAPGEARQVFNPGNRPAMLLLAMPYP 111 >gi|148551007|ref|YP_001260437.1| cupin 2 domain-containing protein [Sphingomonas wittichii RW1] gi|148503418|gb|ABQ71670.1| Cupin 2, conserved barrel domain protein [Sphingomonas wittichii RW1] Length=131 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/113 (39%), Positives = 67/113 (60%), Gaps = 1/113 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M++ R + A Y+AP H+++ ++RLQG EA + W GLS + PGG AE +Y Sbjct 16 MEVVRLADAKTYIAPKHYDMRSLRLQGLEASGADFAWTGLSYFLPGGGAEMDAGPLGKIY 75 Query 61 VVLDGELVVTVDGAET-VLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPV 112 VV++GE+ + + ET VLG LDS + GE R++ N + A +LV + PV Sbjct 76 VVIEGEVTIELGSGETQVLGKLDSCFIPGGEARAVRNDGNIMATMLVVMPSPV 128 >gi|154248661|ref|YP_001419619.1| cupin 2 domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162746|gb|ABS69962.1| Cupin 2 conserved barrel domain protein [Xanthobacter autotrophicus Py2] Length=110 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/108 (42%), Positives = 61/108 (57%), Gaps = 0/108 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M + R QAP Y AP H + +RLQGREAG + W+GLS PGG + E +Y Sbjct 1 MNVMRFDQAPPYQAPGHALMHMVRLQGREAGPADCLWLGLSTIEPGGGTTLDASGVEKMY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTV 108 VVLDGE+ V+ E L DS +A E R++ N T+R A +L+ + Sbjct 61 VVLDGEVTVSNGQEEATLRPWDSCRIAPNESRALRNNTNRIARILLAM 108 >gi|11498807|ref|NP_070036.1| hypothetical protein AF1208 [Archaeoglobus fulgidus DSM 4304] gi|2649385|gb|AAB90045.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length=114 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/114 (38%), Positives = 64/114 (57%), Gaps = 1/114 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MK Y AP H + +RL +E +E FWVGLS + PGG A+ + E VY Sbjct 1 MKKVCIDDVKPYEAPGHFNMVALRLHHKETTGSENFWVGLSHFLPGGGADWDKSDIEKVY 60 Query 61 VVLDGELVVTVDGAETV-LGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVA 113 +VL G++ V +G E + LG +DS+++ GE R + N T+ A +LV ++P A Sbjct 61 IVLSGKMTVVKEGGEKIELGPMDSLYIPPGESRYLVNETNMPATMLVIASYPKA 114 >gi|310657508|ref|YP_003935229.1| hypothetical protein CLOST_0194 [Clostridium sticklandii DSM 519] gi|308824286|emb|CBH20324.1| conserved protein of unknown function [Clostridium sticklandii] Length=115 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/117 (39%), Positives = 66/117 (57%), Gaps = 6/117 (5%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPA----PTRE 56 MK Y AP H + +T++LQG E +FW+G++ + PGG AE A PT Sbjct 1 MKKVDFKDGMPYKAPLHFDCATLKLQGLEETGASKFWMGVTHFLPGGGAEYAYEDSPT-- 58 Query 57 ETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVA 113 E VY+VL+GE++V E +L +DS+ + E R I N+T+ A +LV V +P A Sbjct 59 EKVYIVLEGEVLVKSKTEEFLLKKMDSIFIGPNEGREIINKTNMPATMLVVVNYPEA 115 >gi|148554696|ref|YP_001262278.1| cupin 2 domain-containing protein [Sphingomonas wittichii RW1] gi|148499886|gb|ABQ68140.1| Cupin 2, conserved barrel domain protein [Sphingomonas wittichii RW1] Length=120 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/110 (38%), Positives = 60/110 (55%), Gaps = 0/110 (0%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MK+TR A Y H ++ RLQGR+ + L + PGG+ A + E +Y Sbjct 1 MKVTRFDAAEAYFPAGHVDMRCYRLQGRDDAVEPAMLLNLCHFLPGGSTGSAASPAEKLY 60 Query 61 VVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAH 110 +VL+GEL V+ G E +LG DS +A GE R I NR+ R A +L+ + + Sbjct 61 LVLEGELTVSSGGREELLGPWDSCRIAPGEARLIENRSHRPASILLVMTN 110 >gi|169631565|ref|YP_001705214.1| hypothetical protein MAB_4491c [Mycobacterium abscessus ATCC 19977] gi|169243532|emb|CAM64560.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=118 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/107 (40%), Positives = 60/107 (57%), Gaps = 4/107 (3%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 MK+T+ A Y AP H ++ +RLQG + R +GLS + PGG AE + E +Y Sbjct 1 MKVTKFEDAVLYEAPKHFDMHALRLQGSPSARAR---IGLSRFLPGGGAEMDVSDSEKIY 57 Query 61 VVLDGELVVTVDGA-ETVLGWLDSVHLAKGELRSIHNRTDRQALLLV 106 VVL G + V++ G E VL DS + GE+R+I N + A +LV Sbjct 58 VVLSGSVRVSLSGGTEEVLRMFDSCLIEPGEMRAIANLSHEVATMLV 104 >gi|87122103|ref|ZP_01077987.1| hypothetical protein MED121_04138 [Marinomonas sp. MED121] gi|86162650|gb|EAQ63931.1| hypothetical protein MED121_04138 [Marinomonas sp. MED121] Length=118 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/116 (33%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTRE---- 56 MK + Y PAH +++ ++LQG+E +FW GLS + P G A+ + Sbjct 1 MKKVSLEKVQPYNPPAHFDMTALKLQGKEETGITQFWQGLSYFLPKGGADMQYEKGSFGA 60 Query 57 --ETVYVVLDGELVVT-VDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 E Y ++ GEL +T +G VL DS+ + E RS+ N T+ LVTV+ Sbjct 61 EFEKTYFIIKGELTITNAEGDSLVLCEGDSIAIYPNEGRSVFNHTNNTTSALVTVS 116 >gi|339441758|ref|YP_004707763.1| hypothetical protein CXIVA_06940 [Clostridium sp. SY8519] gi|338901159|dbj|BAK46661.1| hypothetical protein CXIVA_06940 [Clostridium sp. SY8519] Length=115 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/114 (34%), Positives = 60/114 (53%), Gaps = 4/114 (3%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVY 60 M +++ Y AP H ++ +RL G + G F +G+S + PGG E E VY Sbjct 1 MNKVEVNKSLAYNAPGHFDMRAIRLHGADNG-CNAFSLGMSHFLPGGGTEYVEPPVELVY 59 Query 61 VVLDGELVVTVDGAE--TVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPV 112 +L+GE+ + E TVL +S+H A GE + I N+ + A +LV +A P+ Sbjct 60 FILEGEMTIMDKNGEEITVLKKHESMHFAAGEGKQILNKQNYPATMLV-IASPL 112 >gi|302334979|ref|YP_003800186.1| Cupin 2 conserved barrel domain protein [Olsenella uli DSM 7084] gi|301318819|gb|ADK67306.1| Cupin 2 conserved barrel domain protein [Olsenella uli DSM 7084] Length=117 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/114 (32%), Positives = 53/114 (47%), Gaps = 1/114 (0%) Query 2 KLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREETVYV 61 K+TR ++A Y PAH +V RL + R GLS + PGG E E++Y Sbjct 4 KITRRNEATFYEPPAHFDVRCTRLNNADEVNDGRVVFGLSHFLPGGGCEYGSNPCESIYY 63 Query 62 VLDGEL-VVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHPVAE 114 +++GE+ + T DG T L DS H + I N +L + P A+ Sbjct 64 IVEGEMDITTDDGKTTTLHKGDSYHCGPDTEKGIKNNGPVTCQMLTIIVPPAAK 117 >gi|298247653|ref|ZP_06971458.1| Cupin 2 conserved barrel domain protein [Ktedonobacter racemifer DSM 44963] gi|297550312|gb|EFH84178.1| Cupin 2 conserved barrel domain protein [Ktedonobacter racemifer DSM 44963] Length=127 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/114 (33%), Positives = 55/114 (49%), Gaps = 14/114 (12%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYR------PGGTAEPAPT 54 M + RA+++PR+ P H + GR G TE L +R G EP Sbjct 1 MAIVRATESPRFDLPGVHFFGLLA-PGR--GSTE-----LCTWRLEVDPVAGANGEPHQL 52 Query 55 REETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTV 108 E V+V+L+G L +T+DG LG D++ + L S+ NRT +A LV + Sbjct 53 DHEEVFVILEGSLTITIDGQAFDLGAGDALAVPARSLLSVANRTSAKASALVCI 106 >gi|339442015|ref|YP_004708020.1| hypothetical protein CXIVA_09510 [Clostridium sp. SY8519] gi|338901416|dbj|BAK46918.1| hypothetical protein CXIVA_09510 [Clostridium sp. SY8519] Length=118 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/112 (31%), Positives = 51/112 (46%), Gaps = 2/112 (1%) Query 2 KLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRP-GGTAEPAPTREETVY 60 K+T+ Y AP H+E RL + + GL+ + P GG + A E++Y Sbjct 5 KITKKDGYYTYTAPGHNECKCTRLHDPQDVEGGQLINGLTHFLPAGGGTDFASNPCESIY 64 Query 61 VVLDGELVVT-VDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVAHP 111 +L G + D ETVL DSVH+A + + N A +LV + P Sbjct 65 YILHGTMKFKGEDEVETVLEAGDSVHIAANSPKCVTNIGPDTAQMLVVLLPP 116 >gi|89068635|ref|ZP_01156027.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045822|gb|EAR51883.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] Length=188 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/61 (41%), Positives = 31/61 (51%), Gaps = 0/61 (0%) Query 45 PGGTAEPAPTREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALL 104 PG EP R E ++ VL GE+ V ++G VL DSVH + S N TDR A Sbjct 93 PGHRGEPISHRGEEMFFVLAGEVTVEIEGTIDVLRSGDSVHFDSTRVHSTWNDTDRTASF 152 Query 105 L 105 L Sbjct 153 L 153 >gi|188991333|ref|YP_001903343.1| hypothetical protein xccb100_1938 [Xanthomonas campestris pv. campestris str. B100] gi|167733093|emb|CAP51291.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length=135 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/83 (34%), Positives = 43/83 (52%), Gaps = 6/83 (7%) Query 39 GLSV---YRPGGTAEPAP--TREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRS 93 GLSV + P G E +R + VL GE+++ VDG + VL +H+ G Sbjct 29 GLSVLEEHMPPGAMEQRHRHSRARHFFYVLAGEVMLQVDGEQHVLKVGQGLHVTPGSTHQ 88 Query 94 IHNRTDRQA-LLLVTVAHPVAEV 115 +HN +D QA L+++ H AE+ Sbjct 89 MHNLSDEQARFLVISTPHGKAEL 111 >gi|21231679|ref|NP_637596.1| hypothetical protein XCC2241 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768198|ref|YP_242960.1| hypothetical protein XC_1877 [Xanthomonas campestris pv. campestris str. 8004] gi|21113377|gb|AAM41520.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573530|gb|AAY48940.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|341937245|gb|AEL07384.1| cupin domain protein [Xanthomonas campestris pv. raphani 756C] Length=135 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 35/63 (56%), Gaps = 1/63 (1%) Query 54 TREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQA-LLLVTVAHPV 112 +R + VL GE+++ VDG + VL +H+ G +HN +D QA L+++ H Sbjct 49 SRARHFFYVLAGEVMLQVDGEQHVLKVGQGLHVTPGSTHQMHNLSDEQARFLVISTPHGK 108 Query 113 AEV 115 AE+ Sbjct 109 AEL 111 >gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|118172523|gb|ABK73419.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] Length=189 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/75 (38%), Positives = 37/75 (50%), Gaps = 2/75 (2%) Query 41 SVYRPGGTAEPAPTREETVYV--VLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRT 98 +V RPGG + A + V VL G L +TVDG VL D + +L HN T Sbjct 104 TVMRPGGGSGGAYRLDAATIVAYVLRGALSITVDGETVVLNVGDCLTFGAKQLHDWHNPT 163 Query 99 DRQALLLVTVAHPVA 113 +A +L T+A PV Sbjct 164 AGEAEVLWTIAPPVG 178 >gi|294628566|ref|ZP_06707126.1| cupin domain-containing protein [Streptomyces sp. e14] gi|292831899|gb|EFF90248.1| cupin domain-containing protein [Streptomyces sp. e14] Length=124 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/114 (35%), Positives = 55/114 (49%), Gaps = 14/114 (12%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYR---PGGTAEPAPT--R 55 M + RAS A HE+ R A RT L +R P GT PA T R Sbjct 1 MPVVRASDA------VTHEIHGARFVSYAAPRTGAR--ELCAWRGEIPAGTRAPAHTVTR 52 Query 56 EETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 EE ++ +LDGEL++T+D + D+V + G ++ N TDR A+ VT + Sbjct 53 EE-IFHLLDGELLITLDDRTERVTAGDTVIVNAGATLTVENPTDRTAVSWVTTS 105 >gi|21220231|ref|NP_626010.1| hypothetical protein SCO1737 [Streptomyces coelicolor A3(2)] gi|289772550|ref|ZP_06531928.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|5531447|emb|CAB50952.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|289702749|gb|EFD70178.1| conserved hypothetical protein [Streptomyces lividans TK24] Length=124 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/67 (41%), Positives = 38/67 (57%), Gaps = 3/67 (4%) Query 45 PGGTAEPAPT--REETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQA 102 P GT PA T REE V+ +L GEL++T+DG + D+V + G ++ N TDR A Sbjct 40 PAGTKAPAHTVDREE-VFHLLTGELLITLDGRTERVTAGDTVIIGSGATLAVENPTDRTA 98 Query 103 LLLVTVA 109 VT + Sbjct 99 TSWVTTS 105 >gi|325918155|ref|ZP_08180307.1| hypothetical protein, contains double-stranded beta-helix domain [Xanthomonas vesicatoria ATCC 35937] gi|325535630|gb|EGD07474.1| hypothetical protein, contains double-stranded beta-helix domain [Xanthomonas vesicatoria ATCC 35937] Length=117 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/69 (34%), Positives = 36/69 (53%), Gaps = 2/69 (2%) Query 40 LSVYRPGGTAE--PAPTREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNR 97 L + P G AE +R + VL GE+++ +DG + +L S+H+ G +HN Sbjct 32 LEEHMPPGAAELRHRHSRARHFFYVLAGEVMLQLDGEQHLLRAGQSLHVPPGSTHQMHNL 91 Query 98 TDRQALLLV 106 +D QA LV Sbjct 92 SDEQARFLV 100 >gi|297198633|ref|ZP_06916030.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297147158|gb|EFH28515.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length=124 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/66 (40%), Positives = 37/66 (57%), Gaps = 1/66 (1%) Query 45 PGGTAEPAPT-REETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQAL 103 PGGT PA T E ++ +L GEL+VT+D A + D+V + G ++ N TD AL Sbjct 40 PGGTKAPAHTVNREEIFHLLIGELLVTLDDATHRITAGDTVIVNPGVTFAVENPTDHTAL 99 Query 104 LLVTVA 109 VT + Sbjct 100 TWVTTS 105 >gi|29833099|ref|NP_827733.1| hypothetical protein SAV_6557 [Streptomyces avermitilis MA-4680] gi|29610221|dbj|BAC74268.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length=128 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/66 (37%), Positives = 35/66 (54%), Gaps = 1/66 (1%) Query 45 PGGTAEPAPT-REETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQAL 103 P GT P T E ++ +L GELV+T+DG + D+V + G + N TDR A+ Sbjct 44 PAGTKAPVHTVNREEIFHLLSGELVITLDGRTERITAGDTVIINPGATLGVENPTDRTAV 103 Query 104 LLVTVA 109 VT + Sbjct 104 SWVTTS 109 >gi|284028193|ref|YP_003378124.1| Cupin 2 conserved barrel domain-containing protein [Kribbella flavida DSM 17836] gi|283807486|gb|ADB29325.1| Cupin 2 conserved barrel domain protein [Kribbella flavida DSM 17836] Length=105 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 0/75 (0%) Query 32 RTERFWVGLSVYRPGGTAEPAPTREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGEL 91 RTE VG GG + AP RE+ +YVV G + G +G D + + GE Sbjct 23 RTESLSVGTYSIPAGGVDDQAPHREDEIYVVTSGRASIVTPGGAEPVGPGDVLFVPAGEP 82 Query 92 RSIHNRTDRQALLLV 106 T+ ALL+ Sbjct 83 HHFAEVTEDLALLVF 97 >gi|228925026|ref|ZP_04088155.1| hypothetical protein bthur0011_59060 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834603|gb|EEM80113.1| hypothetical protein bthur0011_59060 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length=262 Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/75 (26%), Positives = 33/75 (44%), Gaps = 0/75 (0%) Query 32 RTERFWVGLSVYRPGGTAEPAPTREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGEL 91 + + F ++ PG P EE ++VL G+ ++ VDG E ++G D ++ Sbjct 178 KQQPFGSAWAIVEPGEQTNPHHHDEEETFIVLSGKGIINVDGQEKIVGKGDIIYFEPFST 237 Query 92 RSIHNRTDRQALLLV 106 +I N D L Sbjct 238 HTIKNIGDTSLEFLC 252 >gi|254459919|ref|ZP_05073335.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacterales bacterium HTCC2083] gi|206676508|gb|EDZ40995.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacteraceae bacterium HTCC2083] Length=190 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 20/61 (33%), Positives = 29/61 (48%), Gaps = 0/61 (0%) Query 45 PGGTAEPAPTREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALL 104 PG EP E ++ +LDGE+ V ++G VL DS+H + S N A + Sbjct 93 PGHRMEPISHHGEEMFYILDGEITVEIEGVAEVLRKGDSIHFESCRVHSTWNHGTSTASI 152 Query 105 L 105 L Sbjct 153 L 153 >gi|146305877|ref|YP_001186342.1| cupin 2 domain-containing protein [Pseudomonas mendocina ymp] gi|145574078|gb|ABP83610.1| Cupin 2, conserved barrel domain protein [Pseudomonas mendocina ymp] Length=188 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/59 (41%), Positives = 32/59 (55%), Gaps = 6/59 (10%) Query 62 VLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQA--LLLVTVA----HPVAE 114 VL G +V T++G + LG DSVH G+L + N D A L + T+A HPV E Sbjct 130 VLSGRIVYTIEGRDYPLGPGDSVHFDAGKLHRLANSADTPAEVLTMTTMALFDDHPVNE 188 >gi|329939184|ref|ZP_08288558.1| hypothetical protein SGM_4050 [Streptomyces griseoaurantiacus M045] gi|329302069|gb|EGG45962.1| hypothetical protein SGM_4050 [Streptomyces griseoaurantiacus M045] Length=124 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/111 (37%), Positives = 52/111 (47%), Gaps = 12/111 (10%) Query 1 MKLTRASQAPRYVAPAHHEVSTMRLQGREAGRT-ERFWVGLSVYRPGGTAEPAPT--REE 57 M + R S+A HE+ R A RT R P GT P T REE Sbjct 1 MPVVRPSEA------VTHEIHGARFVSHAAPRTGSRELCAWRGEIPAGTKAPTHTVSREE 54 Query 58 TVYVVLDGELVVTVDG-AETVLGWLDSVHLAKGELRSIHNRTDRQALLLVT 107 ++ +LDGEL+VT+DG E VL D+V + G + N T R A+ VT Sbjct 55 -IFHLLDGELLVTLDGRTERVLAG-DTVIVTPGAAFGVENPTGRTAVTWVT 103 >gi|325920169|ref|ZP_08182129.1| mannose-6-phosphate isomerase [Xanthomonas gardneri ATCC 19865] gi|325549349|gb|EGD20243.1| mannose-6-phosphate isomerase [Xanthomonas gardneri ATCC 19865] Length=121 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 31/56 (56%), Gaps = 0/56 (0%) Query 54 TREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 +R + VL GE+++ +DGA+ VLG + + G +HN +D +A LV A Sbjct 48 SRARHFFYVLAGEVMLQLDGAQHVLGVGQGLDVPPGTTHQMHNLSDVEARFLVISA 103 >gi|335433854|ref|ZP_08558669.1| cupin [Halorhabdus tiamatea SARL4B] gi|334898344|gb|EGM36453.1| cupin [Halorhabdus tiamatea SARL4B] Length=106 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/82 (33%), Positives = 40/82 (49%), Gaps = 3/82 (3%) Query 28 REAGRTERFWVGLSVYRPG--GTA-EPAPTREETVYVVLDGELVVTVDGAETVLGWLDSV 84 R+A E V + PG G A + A E VY+++DGE VT++G + + D+V Sbjct 22 RDALDCETVGVTVLECEPGWSGKAHDHAEENHEEVYLLVDGEATVTIEGQDVAMESGDAV 81 Query 85 HLAKGELRSIHNRTDRQALLLV 106 +A R IHN +LV Sbjct 82 RVAPEATREIHNGDAESKFVLV 103 >gi|58582291|ref|YP_201307.1| hypothetical protein XOO2668 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426885|gb|AAW75922.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length=121 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 31/56 (56%), Gaps = 0/56 (0%) Query 54 TREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 +R + VL GE+++ +DGA+ VL S+H+ G +H +D +A LV A Sbjct 48 SRARHFFYVLAGEVMLKLDGAQHVLRVGQSLHVPPGSTHQVHTLSDVEARFLVISA 103 >gi|84624171|ref|YP_451543.1| hypothetical protein XOO_2514 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576226|ref|YP_001913155.1| cupin [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368111|dbj|BAE69269.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520678|gb|ACD58623.1| cupin domain protein [Xanthomonas oryzae pv. oryzae PXO99A] Length=121 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 31/56 (56%), Gaps = 0/56 (0%) Query 54 TREETVYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 +R + VL GE+++ +DGA+ VL S+H+ G +H +D +A LV A Sbjct 48 SRARHFFYVLAGEVMLKLDGAQHVLRVGQSLHVPPGSTHQVHTLSDVEARFLVISA 103 >gi|21388673|dbj|BAC00796.1| unnamed protein product [Rhodococcus sp. YK2] Length=171 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%) Query 45 PGGTAEPAPTRE--ETVYVVLDGELVVTV----DG---AETVLGWLDSVHLAKGELRSIH 95 P G P T E V+ VL+G+L V+V DG A VLG+ D + + G RS+ Sbjct 78 PAGAVGPEHTHHDVEEVFYVLEGKLKVSVHDVEDGHKKASRVLGYRDLIRVPAGVPRSLE 137 Query 96 NRTDRQALLLVTVAHPVAEV 115 N + ALL V + P ++ Sbjct 138 NIGETDALLCVIIGTPKPQL 157 >gi|76803030|ref|YP_331125.1| hypothetical protein NP4800A [Natronomonas pharaonis DSM 2160] gi|76558895|emb|CAI50491.1| hypothetical protein NP4800A [Natronomonas pharaonis DSM 2160] Length=104 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/98 (31%), Positives = 45/98 (46%), Gaps = 6/98 (6%) Query 13 VAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTRE-ETVYVVLDGELVVTV 71 ++PA EV T L + + F +G PGG +P + E V+ +LDGE++VT Sbjct 9 LSPADGEVETAELVVEDDVLVKLFALG-----PGGAFDPHVHDDCENVFHLLDGEVIVTQ 63 Query 72 DGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 D E + VH +G N D ALL ++ Sbjct 64 DDTEEHIEAPAVVHNPRGIEHGARNDGDEPALLTASLC 101 >gi|110669076|ref|YP_658887.1| hypothetical protein HQ3192A [Haloquadratum walsbyi DSM 16790] gi|109626823|emb|CAJ53291.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] gi|148508175|gb|ABQ75966.1| conserved hypothetical protein [uncultured haloarchaeon] gi|339730171|emb|CCC41491.1| cupin 2 barrel domain protein [Haloquadratum walsbyi C23] Length=109 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 29/104 (28%), Positives = 48/104 (47%), Gaps = 6/104 (5%) Query 7 SQAPRYVAPAHHEVSTMRLQGREAGRTERFWVGLSVYRPGGTAEPAPTREET-VYVVLDG 65 ++A + PA + T L E + F +G PG + +P + T V+ +LDG Sbjct 8 AEAIASLDPAAGNIETAELHVSEDVLLKAFALG-----PGASVDPHEHEKSTNVFHILDG 62 Query 66 ELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTVA 109 +VVT D ET + V+ +G + N TD A+L ++ Sbjct 63 TVVVTQDDEETTVDAPGVVYNDRGVVHGARNETDTVAILTASLC 106 >gi|291280384|ref|YP_003497219.1| hypothetical protein DEFDS_2012 [Deferribacter desulfuricans SSM1] gi|290755086|dbj|BAI81463.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length=114 Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 0/50 (0%) Query 59 VYVVLDGELVVTVDGAETVLGWLDSVHLAKGELRSIHNRTDRQALLLVTV 108 +Y++LDG+ VV G E +L D + KGE SI N+T+ L + Sbjct 63 IYLILDGKAVVNDSGTEELLNPGDMLITPKGEGHSIENKTNEPITFLAVI 112 >gi|337266922|ref|YP_004610977.1| Cupin 2 barrel domain-containing protein [Mesorhizobium opportunistum WSM2075] gi|336027232|gb|AEH86883.1| Cupin 2 conserved barrel domain protein [Mesorhizobium opportunistum WSM2075] Length=154 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 34/103 (34%), Positives = 46/103 (45%), Gaps = 5/103 (4%) Query 8 QAPRYVAPAHHEVST-MRLQGREAGRTERFWVGLSVYRPGGTAEPAP--TREETVYVVLD 64 Q Y AP + +T R + +AG F V L PGG + + E+ + VL+ Sbjct 13 QGSGYPAPFNAPCATRTRRRLGDAGGLTDFGVNLMTLPPGGWSSQRHWHSHEDELVYVLE 72 Query 65 GELVVTVDGAETVLGWLDSVHLAKGELRSIH--NRTDRQALLL 105 GEL + DG ET+L DS AK H NR+ A L Sbjct 73 GELTLVEDGGETLLRAGDSAAFAKNSGNGHHMINRSATTARYL 115 Lambda K H 0.317 0.132 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130541267802 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40