BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1719
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608857|ref|NP_216235.1| transcriptional regulatory protein ... 511 3e-143
gi|289750275|ref|ZP_06509653.1| conserved hypothetical protein [... 511 6e-143
gi|289443178|ref|ZP_06432922.1| transcriptional regulator [Mycob... 508 4e-142
gi|340626726|ref|YP_004745178.1| putative transcriptional regula... 508 5e-142
gi|240169428|ref|ZP_04748087.1| putative transcriptional regulat... 407 7e-112
gi|296164612|ref|ZP_06847179.1| crp family transcriptional regul... 365 3e-99
gi|87122108|ref|ZP_01077992.1| probable transcriptional regulato... 194 1e-47
gi|332306835|ref|YP_004434686.1| transcriptional regulator, IclR... 179 4e-43
gi|109898642|ref|YP_661897.1| IclR family transcriptional regula... 177 1e-42
gi|340843872|ref|YP_004750622.1| HTH-type transcriptional regula... 163 2e-38
gi|148551009|ref|YP_001260439.1| transcriptional regulator IclR-... 161 8e-38
gi|118592788|ref|ZP_01550177.1| probable transcriptional regulat... 160 1e-37
gi|71153536|sp|Q9R9U0.1|SRPS_PSEPU RecName: Full=HTH-type transc... 158 7e-37
gi|313103516|pdb|2XRN|A Chain A, Crystal Structure Of Ttgv >gi|3... 153 2e-35
gi|148548079|ref|YP_001268181.1| regulatory protein IclR [Pseudo... 149 4e-34
gi|28631602|gb|AAO49781.1| Sep repressor SepR [Pseudomonas putida] 146 3e-33
gi|317053334|ref|YP_004119101.1| transcriptional regulator, IclR... 145 8e-33
gi|307130701|ref|YP_003882717.1| IclR family transcriptional reg... 142 4e-32
gi|291618289|ref|YP_003521031.1| TtgV [Pantoea ananatis LMG 2010... 140 3e-31
gi|335042085|ref|ZP_08535112.1| transcriptional regulator, IclR ... 139 4e-31
gi|327394679|dbj|BAK12101.1| HTH-type transcriptional regulator ... 139 5e-31
gi|317049018|ref|YP_004116666.1| IclR family transcriptional reg... 137 1e-30
gi|226947132|ref|YP_002802205.1| multidrug efflux pump operon tr... 134 1e-29
gi|120556399|ref|YP_960750.1| regulatory proteins, IclR [Marinob... 134 2e-29
gi|304398292|ref|ZP_07380166.1| transcriptional regulator, IclR ... 131 9e-29
gi|120401183|ref|YP_951012.1| regulatory proteins IclR [Mycobact... 131 1e-28
gi|242238667|ref|YP_002986848.1| IclR family transcriptional reg... 131 1e-28
gi|308187669|ref|YP_003931800.1| HTH-type transcriptional regula... 130 2e-28
gi|42601196|gb|AAS21297.1| putative efflux pump regulator TbtR [... 128 7e-28
gi|300717818|ref|YP_003742621.1| transcriptional regulator, IclR... 127 1e-27
gi|300714988|ref|YP_003739791.1| transcriptional regulator, IclR... 127 1e-27
gi|315648323|ref|ZP_07901423.1| IclR family transcriptional regu... 127 2e-27
gi|302872748|ref|YP_003841384.1| IclR family transcriptional reg... 125 4e-27
gi|322833685|ref|YP_004213712.1| IclR family transcriptional reg... 125 5e-27
gi|344995373|ref|YP_004797716.1| IclR family transcriptional reg... 125 6e-27
gi|312794147|ref|YP_004027070.1| IclR family transcriptional reg... 125 7e-27
gi|296164761|ref|ZP_06847324.1| IclR family transcriptional regu... 125 7e-27
gi|289524178|ref|ZP_06441032.1| transcriptional regulator, IclR ... 125 7e-27
gi|325961669|ref|YP_004239575.1| transcriptional regulator [Arth... 125 9e-27
gi|157369577|ref|YP_001477566.1| IclR family transcriptional reg... 124 1e-26
gi|312136092|ref|YP_004003430.1| IclR family transcriptional reg... 124 2e-26
gi|169631567|ref|YP_001705216.1| IclR family transcriptional reg... 124 2e-26
gi|91776908|ref|YP_546664.1| IclR family transcriptional regulat... 123 3e-26
gi|82408423|gb|ABB73049.1| putative IclR-family transcriptional ... 121 8e-26
gi|302388968|ref|YP_003824789.1| transcriptional regulator, IclR... 120 2e-25
gi|118472632|ref|YP_886822.1| IclR family transcriptional regula... 119 4e-25
gi|169244310|gb|ACA50468.1| IclR family regulatory protein [Pseu... 119 5e-25
gi|92112201|ref|YP_572129.1| IclR family transcriptional regulat... 119 5e-25
gi|269854703|gb|ACZ51375.1| putative IclR family transcriptional... 118 8e-25
gi|146295413|ref|YP_001179184.1| regulatory protein IclR [Caldic... 118 9e-25
>gi|15608857|ref|NP_216235.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841179|ref|NP_336216.1| Crp family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31792907|ref|NP_855400.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=259
Score = 511 bits (1317), Expect = 3e-143, Method: Compositional matrix adjust.
Identities = 258/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
+SAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG
Sbjct 1 MSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
Query 61 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 120
LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV
Sbjct 61 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 120
Query 121 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA
Sbjct 121 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
Query 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA
Sbjct 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
Query 241 LLAWVSKVDAWFNGTEDRK 259
LLAWVSKVDAWFNGTEDRK
Sbjct 241 LLAWVSKVDAWFNGTEDRK 259
>gi|289750275|ref|ZP_06509653.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289690862|gb|EFD58291.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=535
Score = 511 bits (1315), Expect = 6e-143, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
VSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG
Sbjct 277 VSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 336
Query 61 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 120
LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV
Sbjct 337 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 396
Query 121 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA
Sbjct 397 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 456
Query 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA
Sbjct 457 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 516
Query 241 LLAWVSKVDAWFNGTEDRK 259
LLAWVSKVDAWFNGTEDRK
Sbjct 517 LLAWVSKVDAWFNGTEDRK 535
>gi|289443178|ref|ZP_06432922.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289569770|ref|ZP_06449997.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289416097|gb|EFD13337.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289543524|gb|EFD47172.1| transcriptional regulator [Mycobacterium tuberculosis T17]
Length=259
Score = 508 bits (1308), Expect = 4e-142, Method: Compositional matrix adjust.
Identities = 257/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)
Query 1 VSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
+SAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG
Sbjct 1 MSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
Query 61 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 120
LVASR ARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV
Sbjct 61 LVASRRARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 120
Query 121 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA
Sbjct 121 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
Query 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA
Sbjct 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
Query 241 LLAWVSKVDAWFNGTEDRK 259
LLAWVSKVDAWFNGTEDRK
Sbjct 241 LLAWVSKVDAWFNGTEDRK 259
>gi|340626726|ref|YP_004745178.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340004916|emb|CCC44062.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=259
Score = 508 bits (1307), Expect = 5e-142, Method: Compositional matrix adjust.
Identities = 256/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)
Query 1 VSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
+SAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG
Sbjct 1 MSAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEG 60
Query 61 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVV 120
LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRAD V
Sbjct 61 LVASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADFV 120
Query 121 DQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
DQVVPP+RLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA
Sbjct 121 DQVVPPRRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAA 180
Query 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA
Sbjct 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGA 240
Query 241 LLAWVSKVDAWFNGTEDRK 259
LLAWVSKVDAWFNGTEDRK
Sbjct 241 LLAWVSKVDAWFNGTEDRK 259
>gi|240169428|ref|ZP_04748087.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=257
Score = 407 bits (1047), Expect = 7e-112, Method: Compositional matrix adjust.
Identities = 210/253 (84%), Positives = 230/253 (91%), Gaps = 0/253 (0%)
Query 3 AEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLV 62
AE+ D RSGGIQVIARAAE+LRVLQAHPGGLSQ EIGERVGMARSTVSRILNALEDEGLV
Sbjct 5 AEDSDVRSGGIQVIARAAEILRVLQAHPGGLSQVEIGERVGMARSTVSRILNALEDEGLV 64
Query 63 ASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQ 122
ASRG RGPYRLGPEI RMA+TVRL VV ++HPFLT+LSRELDETVDLSILDGDRAD +DQ
Sbjct 65 ASRGVRGPYRLGPEIARMASTVRLSVVADLHPFLTQLSRELDETVDLSILDGDRADFIDQ 124
Query 123 VVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALR 182
VVPP+RLRAVSAVGESFPLYCCANGKALLA+LPPERQA+ LPSRL PLTANTITDRAALR
Sbjct 125 VVPPRRLRAVSAVGESFPLYCCANGKALLASLPPERQAQVLPSRLMPLTANTITDRAALR 184
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
+EL +I DG+AYDREEQT+GICAVG VL GV+ +VAVSVPVPAQRFYGREAELA AL
Sbjct 185 EELAQISRDGIAYDREEQTDGICAVGTVLHGVTDHVVAVSVPVPAQRFYGREAELAKALR 244
Query 243 AWVSKVDAWFNGT 255
W +KV++WF +
Sbjct 245 VWEAKVNSWFEAS 257
>gi|296164612|ref|ZP_06847179.1| crp family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900031|gb|EFG79470.1| crp family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=270
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/241 (79%), Positives = 208/241 (87%), Gaps = 4/241 (1%)
Query 12 GIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPY 71
G+QVIARAAE+LR+LQAHPGGLSQAEIG+R+G+ARSTVSRIL AL+DEGLVAS RG Y
Sbjct 7 GVQVIARAAEILRLLQAHPGGLSQAEIGDRLGLARSTVSRILGALDDEGLVASPRGRGGY 66
Query 72 RLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLRA 131
RLGPEI RMA+TVRLGVV ++HPF+ ELSR+L ETVDLSILDGDRA VDQVV P RLRA
Sbjct 67 RLGPEIARMASTVRLGVVMDVHPFMEELSRDLGETVDLSILDGDRATFVDQVVSPHRLRA 126
Query 132 VSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRVD 191
+SAVGESFPL+CCANGKALLA LPPER LPSRLA LT NTIT AALR+EL R+R +
Sbjct 127 ISAVGESFPLHCCANGKALLAGLPPER----LPSRLARLTPNTITSPAALREELERVRAE 182
Query 192 GVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVSKVDAW 251
GVAYDREEQTEGICAVGAVLRGV+ VAVSVPVPAQRFYGREAEL AL AWV K++A
Sbjct 183 GVAYDREEQTEGICAVGAVLRGVTGHAVAVSVPVPAQRFYGREAELTQALRAWVEKINAC 242
Query 252 F 252
Sbjct 243 L 243
>gi|87122108|ref|ZP_01077992.1| probable transcriptional regulatory protein [Marinomonas sp.
MED121]
gi|86162655|gb|EAQ63936.1| probable transcriptional regulatory protein [Marinomonas sp.
MED121]
Length=255
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/247 (42%), Positives = 156/247 (64%), Gaps = 1/247 (0%)
Query 4 EEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVA 63
E++ + G+QVIARAA +LRVL+ P GLS I + +G+ARSTV RI+ AL++E V
Sbjct 2 EKESSSRQGVQVIARAAAILRVLENQPDGLSLGAIAKALGLARSTVQRIVYALDEERFVI 61
Query 64 SRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQV 123
+ G RLGP + + + + + + P++ +LS E++ETVDLS+ DG +DQ+
Sbjct 62 AASPTGRVRLGPGLVSLGSAAKADIDRVILPYMKQLSDEIEETVDLSVHDGASMIFIDQI 121
Query 124 VP-PQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALR 182
+ QRL AVSAVG+ FP++ CANGKA+LAA+ + + L L T T+ + +
Sbjct 122 ITEKQRLMAVSAVGQPFPIHSCANGKAVLAAMNDDEIKKLLSYPLEKSTNKTLIEENEIL 181
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
E++ IR GVA+D EE +G+CAVGA + G + +A+S+PVP+ RFYG E +LA LL
Sbjct 182 KEIDNIRQMGVAFDLEEHHQGLCAVGACISGPYGQNLALSIPVPSVRFYGNEDKLAKVLL 241
Query 243 AWVSKVD 249
+ ++
Sbjct 242 KYCDIIE 248
>gi|332306835|ref|YP_004434686.1| transcriptional regulator, IclR family [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174164|gb|AEE23418.1| transcriptional regulator, IclR family [Glaciecola sp. 4H-3-7+YE-5]
Length=257
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/240 (41%), Positives = 142/240 (60%), Gaps = 2/240 (0%)
Query 12 GIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPY 71
GIQVI+RAA +LR L+ HP GLS + I + V +ARSTV RI+N+L EG + +
Sbjct 10 GIQVISRAANILRTLEGHPEGLSLSAIAKNVKLARSTVQRIVNSLASEGFLIAASPTSRV 69
Query 72 RLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVP-PQRLR 130
RLGP + + + + + + P + LS E+ ETVDLS+ D + +DQV +LR
Sbjct 70 RLGPGLVSLGSAAKADIDRVLLPHMKNLSDEVGETVDLSVQDAENMIFIDQVTTDAHQLR 129
Query 131 AVSAVGESFPLYCCANGKALLAALP-PERQARALPSRLAPLTANTITDRAALRDELNRIR 189
AVSAVG +F +YCCANGKA+LA + E A + LT +TIT L E+ IR
Sbjct 130 AVSAVGHAFSIYCCANGKAMLATMSDDEVMAFVEAHPIKALTRSTITSTEQLLTEIASIR 189
Query 190 VDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVSKVD 249
+GVA+D+EE EG+CA+G + +A+S+PVP RF + +LA L + + ++
Sbjct 190 KNGVAFDKEEHCEGVCAIGVAIEDPYGRNIAISIPVPTIRFNRNKKQLAARLREYKTTIE 249
>gi|109898642|ref|YP_661897.1| IclR family transcriptional regulator [Pseudoalteromonas atlantica
T6c]
gi|109700923|gb|ABG40843.1| transcriptional regulator, IclR family [Pseudoalteromonas atlantica
T6c]
Length=257
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/248 (40%), Positives = 145/248 (59%), Gaps = 2/248 (0%)
Query 4 EEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVA 63
E + + GIQVI+RAA +LR L+ HP GLS + I + V +ARSTV RI+N+L EG +
Sbjct 2 ENEPSSRQGIQVISRAANILRTLEGHPEGLSLSAIAKNVKLARSTVQRIVNSLASEGFLI 61
Query 64 SRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQV 123
+ RLGP + + + + + + P + LS E+ ETVDLS+ D + +DQV
Sbjct 62 AASPTSRVRLGPGLVSLGSAAKADIDRVLIPHMKNLSDEVGETVDLSVQDAENMIFIDQV 121
Query 124 VP-PQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSR-LAPLTANTITDRAAL 181
+LRAVSAVG +F +Y CANGKA+LA + E + + + LT +TIT L
Sbjct 122 TTDTHQLRAVSAVGHAFSIYSCANGKAMLATMSDEEVMAFVDAHPIKALTHSTITSTEQL 181
Query 182 RDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGAL 241
E+ IR +GVA+D+EE EG+CA+G + +A+S+PVP RF + +LA L
Sbjct 182 LTEIASIRKNGVAFDKEEHCEGVCAIGVAIEDPYGRNIAISIPVPTVRFNRNKKQLAKQL 241
Query 242 LAWVSKVD 249
+ + ++
Sbjct 242 REYKTTIE 249
>gi|340843872|ref|YP_004750622.1| HTH-type transcriptional regulator TtgV [Pseudomonas putida]
gi|71153381|sp|Q93PU6.1|TTGV_PSEPU RecName: Full=HTH-type transcriptional regulator ttgV; AltName:
Full=Toluene tolerance pump ttgGHI operon repressor
gi|14582623|gb|AAK69562.1| HTH-type transcriptional regulator, TtgV [Pseudomonas putida]
Length=259
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/240 (41%), Positives = 148/240 (62%), Gaps = 2/240 (0%)
Query 3 AEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLV 62
++E ++GGIQVIARAA ++R L +HP GLS A I + VG+ RSTV RI+NALE+E LV
Sbjct 4 SDENIGKAGGIQVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLV 63
Query 63 ASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQ 122
+ G G +RLGP + ++ + +++ + P+L L+ ELDE+V L+ L GD+ V+D+
Sbjct 64 EALGPAGGFRLGPALGQLINQAQTDILSLVKPYLRSLAEELDESVCLASLAGDKIYVLDR 123
Query 123 VVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALR 182
+V + LR V +G + P A GK LLAALP E AL +L LT+NT+ R AL
Sbjct 124 IVSERELRVVFPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVLTSNTL-GRKALV 182
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
+L+ +R GVA D +E +G+C+ A L + ++++ +P+ R + + ALL
Sbjct 183 KQLSEVRQSGVASDLDEHIDGVCSF-ATLLDTYLGYYSLAIVMPSSRASKQSDLIKKALL 241
>gi|148551009|ref|YP_001260439.1| transcriptional regulator IclR-like protein [Sphingomonas wittichii
RW1]
gi|148503420|gb|ABQ71672.1| Transcriptional regulator IclR-like protein [Sphingomonas wittichii
RW1]
Length=254
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/231 (40%), Positives = 131/231 (57%), Gaps = 0/231 (0%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
GG V+AR+A ++R L + G S +I ++VGMARSTV R++ ALE EGLV S A G
Sbjct 8 GGPGVVARSAAIMRALASSQDGFSLGQIAKQVGMARSTVQRLVYALESEGLVMSGAAAGQ 67
Query 71 YRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLR 130
LGPEI R+A+++ + T + P +T+LS + ET+DL+ + +DQ+ RL
Sbjct 68 ITLGPEILRLASSMMPALATRVRPIMTKLSEQTQETIDLATIRRRGVLFIDQIPGQHRLA 127
Query 131 AVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRV 190
AVS VG+ FPL+C + GKA LA + + + T +T+T+ L L +
Sbjct 128 AVSHVGDQFPLHCSSVGKAFLARMKRAEIEALIGTSYERRTPHTLTEIGPLLASLEQTAQ 187
Query 191 DGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGAL 241
G +D EE +EGICA+G VLR S +S+PVP QR+ L L
Sbjct 188 TGFGFDEEEHSEGICAIGFVLRDASSHWYGLSIPVPLQRYTATRDHLTAML 238
>gi|118592788|ref|ZP_01550177.1| probable transcriptional regulatory protein [Stappia aggregata
IAM 12614]
gi|118434558|gb|EAV41210.1| probable transcriptional regulatory protein [Stappia aggregata
IAM 12614]
Length=267
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/248 (44%), Positives = 138/248 (56%), Gaps = 20/248 (8%)
Query 5 EQDTRSG-GIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVA 63
E+ T+S GIQVI+RAAE+LR+L+ GLS +I +RV + RSTV RI+NAL E LV
Sbjct 20 ERKTQSNQGIQVISRAAEILRILKKDNSGLSLGQIADRVHLPRSTVQRIVNALIAERLVM 79
Query 64 SRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQV 123
+ A G RLG EI +A R+ + + P L ELSRE ETVDL+ D VDQV
Sbjct 80 ASAAEGGLRLGSEIQSLAAAGRINMAELVRPILAELSRETKETVDLAAFRDDHMVFVDQV 139
Query 124 VPPQRLRAVSAVGESFPLYCCANGKA---------LLAALPPERQARALPSRLAPLTANT 174
V RLR VSAVGE FP+ ANGKA L+A PE +A ++ PL+
Sbjct 140 VGSHRLRTVSAVGEVFPMTDTANGKAALSLMEDDVLVAIAGPELKADGKTAK--PLS--- 194
Query 175 ITDRAALRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGRE 234
E+ IR G+A+D E T+GI A G + + AVSVPVP+ RF +
Sbjct 195 -----EFMKEVEDIRKTGIAWDLNEHTDGISAAGFAFKDPMGLIYAVSVPVPSHRFEKLK 249
Query 235 AELAGALL 242
+L LL
Sbjct 250 DKLVELLL 257
>gi|71153536|sp|Q9R9U0.1|SRPS_PSEPU RecName: Full=HTH-type transcriptional regulator srpS; AltName:
Full=Solvent efflux pump srpABC operon corepressor
gi|6560605|gb|AAF16681.1|AF061937_1 efflux pump regulator SrpS [Pseudomonas putida]
gi|343978746|gb|AEM76703.1| SrpS [Expression vector pMMRS]
Length=259
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/240 (40%), Positives = 146/240 (61%), Gaps = 2/240 (0%)
Query 3 AEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLV 62
++E ++GGIQVIARAA ++R L +HP GLS A I + VG+ RSTV RI+NALE+E LV
Sbjct 4 SDENVGKAGGIQVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLV 63
Query 63 ASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQ 122
+ G G +RLGP + ++ + +++ + P+L L+ EL+E+V L+ L GD+ V+D+
Sbjct 64 EALGPAGGFRLGPALGQLINQAQSDILSLVKPYLRSLAEELEESVCLASLAGDKIYVLDR 123
Query 123 VVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALR 182
+V + LR V +G + P A GK LLAALP E AL +L T+NT+ R AL
Sbjct 124 IVSERELRVVFPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVFTSNTLR-RKALV 182
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
+L+ +R G A D +E +G+C+ A L + +++V +P+ R + + ALL
Sbjct 183 KQLSEVRQSGFASDLDEHIDGVCSF-ATLLDTYLGYYSLAVVMPSSRASKQSDLIKKALL 241
>gi|313103516|pdb|2XRN|A Chain A, Crystal Structure Of Ttgv
gi|313103517|pdb|2XRN|B Chain B, Crystal Structure Of Ttgv
gi|313103518|pdb|2XRO|A Chain A, Crystal Structure Of Ttgv In Complex With Its Dna Operator
gi|313103519|pdb|2XRO|B Chain B, Crystal Structure Of Ttgv In Complex With Its Dna Operator
gi|313103520|pdb|2XRO|E Chain E, Crystal Structure Of Ttgv In Complex With Its Dna Operator
gi|313103521|pdb|2XRO|F Chain F, Crystal Structure Of Ttgv In Complex With Its Dna Operator
Length=241
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/199 (44%), Positives = 126/199 (64%), Gaps = 1/199 (0%)
Query 13 IQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPYR 72
IQVIARAA ++R L +HP GLS A I + VG+ RSTV RI+NALE+E LV + G G +R
Sbjct 2 IQVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFR 61
Query 73 LGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLRAV 132
LGP + ++ + +++ + P+L L+ ELDE+V L+ L GD+ V+D++V + LR V
Sbjct 62 LGPALGQLINQAQTDILSLVKPYLRSLAEELDESVSLASLAGDKIYVLDRIVSERELRVV 121
Query 133 SAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRVDG 192
+G + P A GK LLAALP E AL +L LT+NT+ R AL +L+ +R G
Sbjct 122 FPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVLTSNTL-GRKALVKQLSEVRQSG 180
Query 193 VAYDREEQTEGICAVGAVL 211
VA D +E +G+ + +L
Sbjct 181 VASDLDEHIDGVSSFATLL 199
>gi|148548079|ref|YP_001268181.1| regulatory protein IclR [Pseudomonas putida F1]
gi|148512137|gb|ABQ78997.1| regulatory protein, IclR [Pseudomonas putida F1]
gi|298682350|gb|ADI95411.1| TtgT [Pseudomonas putida]
Length=260
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/247 (40%), Positives = 136/247 (56%), Gaps = 2/247 (0%)
Query 3 AEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLV 62
+EE R GGIQVIARAA ++R L +HP GLS A I + V + RSTV RI+NAL E LV
Sbjct 4 SEESSARHGGIQVIARAASIMRALGSHPQGLSLAAIAQVVDLPRSTVQRIINALGAEHLV 63
Query 63 ASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQ 122
+ G G +RLGP R+ T + +++ + P L LS ++ E+ L L G++ V+D+
Sbjct 64 EALGPSGGFRLGPAFGRLITQAQTDIISLVRPHLIALSEQVYESTCLLSLSGEKIYVLDR 123
Query 123 VVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALR 182
VV + LR V +G P + GK LLA L E Q LP L T ++ R AL
Sbjct 124 VVAERELRVVFPIGIHVPATAVSGGKVLLAELSEEAQQALLPDPLPVCTPRSVA-REALL 182
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
++L I+ GVA D +E EG+C+ +VL + +VS+ P R R AE AL
Sbjct 183 EQLKTIKSGGVADDHDEYIEGLCSY-SVLLDTYLGHYSVSIVAPNSRATTRVAEFQQALQ 241
Query 243 AWVSKVD 249
A ++
Sbjct 242 ACKQNIE 248
>gi|28631602|gb|AAO49781.1| Sep repressor SepR [Pseudomonas putida]
Length=260
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/247 (39%), Positives = 135/247 (55%), Gaps = 2/247 (0%)
Query 3 AEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLV 62
+EE R GGIQVIARAA ++R L +HP GLS A I + V + RSTV RI+NAL E LV
Sbjct 4 SEESSARHGGIQVIARAASIMRALGSHPQGLSLAAIAQVVDLPRSTVQRIINALGAEHLV 63
Query 63 ASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQ 122
+ G G +RLGP R+ T + +++ + P L LS ++ E+ L L G++ V+D+
Sbjct 64 EALGPSGGFRLGPAFGRLITQAQTDIISLVRPHLIALSEQVYESTCLLSLSGEKIYVLDR 123
Query 123 VVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALR 182
VV + LR V +G P + GK LLA L E Q LP L T ++ R AL
Sbjct 124 VVAERELRVVFPIGIHVPATAVSGGKVLLAELSEEAQQALLPDPLPVCTPRSVA-REALL 182
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
++L I+ GVA D +E E +C+ +VL + +VS+ P R R AE AL
Sbjct 183 EQLKTIKSGGVADDHDEYIEWLCSY-SVLLDTYLGHYSVSIVAPNSRATTRVAEFQQALQ 241
Query 243 AWVSKVD 249
A ++
Sbjct 242 ACKQNIE 248
>gi|317053334|ref|YP_004119101.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
gi|316953073|gb|ADU72545.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
Length=250
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/245 (38%), Positives = 133/245 (55%), Gaps = 2/245 (0%)
Query 7 DTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRG 66
D+ G QVIARAA +LR L+ P GL+ E+ + G+AR+TV R++ +LE + L+ + G
Sbjct 4 DSEQSGSQVIARAAIILRTLETQPKGLTITELARQTGLARATVHRLVASLEQQQLLMANG 63
Query 67 ARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPP 126
G RLGP + R+A V+ P + L R ETVDLS+ G A V Q V
Sbjct 64 --GEIRLGPALARLAAAAHTDVIALARPAMETLGRRTRETVDLSVYRGSHAVSVSQYVSD 121
Query 127 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELN 186
Q LR VSAVG +FP +C A+GKALLA + + A ++ T + + AAL ++
Sbjct 122 QELRVVSAVGTAFPSHCTAHGKALLAQIDDQTIASVFGEQIEVRTQYSHGNLAALLADVA 181
Query 187 RIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVS 246
+IR G A D EE G+C +G + E A+S+ +PA RF L AL S
Sbjct 182 QIRERGYAVDTEEHALGVCGLGVSINAHLNEHYAISLAIPALRFEDNFTLLLSALKQCKS 241
Query 247 KVDAW 251
+++A
Sbjct 242 EIEAL 246
>gi|307130701|ref|YP_003882717.1| IclR family transcriptional regulator [Dickeya dadantii 3937]
gi|306528230|gb|ADM98160.1| Transcriptional regulator, IclR family [Dickeya dadantii 3937]
Length=255
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/244 (40%), Positives = 132/244 (55%), Gaps = 5/244 (2%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
GGIQVI+RAA +LR + P GLS +I G+ARSTV RI++ALE E LV + GA+G
Sbjct 7 GGIQVISRAAAILREICESPDGLSLGQIASLTGLARSTVQRIVDALEGEHLVQA-GAKG- 64
Query 71 YRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLR 130
R G + R+ + P L L ETVDLS LDG +D+ + QR+R
Sbjct 65 VRPGWGLRRLGEISNPEPSHNLRPLLYRLYERTKETVDLSTLDGTSVLFMDRFLSEQRIR 124
Query 131 AVSAVGESFPLYCCANGKALLAALPPERQARAL--PSRLAPLTANTITDRAALRDELNRI 188
AV + +P Y ANGKALL+ L +R+ L L +T N++ + L +LN I
Sbjct 125 AVPDIRVRYPAYTMANGKALLSTL-SDREIHNLYGSGMLERITPNSVVNVDDLVKQLNAI 183
Query 189 RVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVSKV 248
R G AYDREE CA+G LR +A+SV VP RF+ +E+ AL V +
Sbjct 184 RAGGFAYDREEHAVDSCAIGLPLRIWGGLNLAISVVVPTHRFHSHRSEIETALRLCVDEC 243
Query 249 DAWF 252
+ +
Sbjct 244 NQYL 247
>gi|291618289|ref|YP_003521031.1| TtgV [Pantoea ananatis LMG 20103]
gi|291153319|gb|ADD77903.1| TtgV [Pantoea ananatis LMG 20103]
Length=261
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 132/235 (57%), Gaps = 4/235 (1%)
Query 2 SAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGL 61
S+ +D ++GGIQVIARAA++L L HPGG+S EI + V + RSTV RI+ AL+ L
Sbjct 5 SSSREDEKTGGIQVIARAAKILNALGEHPGGMSLGEIAQVVDLPRSTVQRIVAALDSAEL 64
Query 62 VASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVD 121
V S GA G RLGP + ++ ++V VV + P L +LS + +ETV L+ G + VV
Sbjct 65 VRSSGA-GGLRLGPALLKLLSSVNTDVVDLVKPLLEKLSADTNETVSLARASGSQLAVVH 123
Query 122 QVVPPQRLRAVSAVGESFPLYCCANGKALLA-ALPPERQARALPSRLAPLTANTITDRAA 180
VV + LR V +G PLY + G+ALLA + QAR + LT T+ AA
Sbjct 124 YVVASRELRVVPRIGLDLPLYSTSGGRALLALESDADVQAR-VGDDWRELTDKTVKTLAA 182
Query 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREA 235
L ++ +R ++YDR E EG+ + L + AVS+ VP RF EA
Sbjct 183 LLQMIHEVRKTSISYDRGETLEGVSTMAFALDTIFGRF-AVSLLVPTARFKKHEA 236
>gi|335042085|ref|ZP_08535112.1| transcriptional regulator, IclR family [Methylophaga aminisulfidivorans
MP]
gi|333788699|gb|EGL54581.1| transcriptional regulator, IclR family [Methylophaga aminisulfidivorans
MP]
Length=249
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/242 (34%), Positives = 130/242 (54%), Gaps = 2/242 (0%)
Query 8 TRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGA 67
++ QVI+RAA +L+ LQ +P G+S + +RV + RSTV R++++LE LV
Sbjct 5 SKHNHSQVISRAATILKALQHYPQGISITALAKRVELPRSTVHRLVSSLEQASLVIH--T 62
Query 68 RGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQ 127
R +LG + +M T ++ P + L+R ETVD+ + G + +DQ+ Q
Sbjct 63 RQGIQLGAALLQMTHTAHTDFISVAKPHIDTLARRTRETVDVCVFRGQYSLSIDQIASDQ 122
Query 128 RLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNR 187
LR +S VG +FP+Y A+GKA+LA L E + + T ++ L +L+
Sbjct 123 ELRVMSPVGTAFPVYTSAHGKAILATLSNEEVKTVIGDKWIQRTESSHVSYDTLFRDLDL 182
Query 188 IRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVSK 247
IR +G A D EE EG+CAVG ++ E A++V +P RF E+ ALL ++
Sbjct 183 IRKNGWAVDIEEHAEGVCAVGVSIQSSLAERYAIAVALPVIRFNKNMTEVTSALLQCQAE 242
Query 248 VD 249
V+
Sbjct 243 VE 244
>gi|327394679|dbj|BAK12101.1| HTH-type transcriptional regulator TtgV TtgV [Pantoea ananatis
AJ13355]
Length=323
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 132/235 (57%), Gaps = 4/235 (1%)
Query 2 SAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGL 61
S+ +D ++GGIQVIARAA++L L HPGG+S EI + V + RSTV RI+ AL+ L
Sbjct 67 SSSREDEKTGGIQVIARAAKILNALGEHPGGMSLGEIAQVVDLPRSTVQRIVAALDSAEL 126
Query 62 VASRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVD 121
V S GA G RLGP + ++ ++V VV + P L +LS + +ETV L+ G + VV
Sbjct 127 VRSSGA-GGLRLGPALLKLLSSVNTDVVDLVKPLLEKLSADTNETVSLARASGSQLAVVH 185
Query 122 QVVPPQRLRAVSAVGESFPLYCCANGKALLA-ALPPERQARALPSRLAPLTANTITDRAA 180
VV + LR V +G PLY + G+ALLA + QAR + LT T+ AA
Sbjct 186 YVVASRELRVVPRIGLDLPLYSTSGGRALLALESDADVQAR-VGDDWRELTDKTVKTLAA 244
Query 181 LRDELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREA 235
L ++ +R ++YDR E EG+ + L + AVS+ VP RF EA
Sbjct 245 LLQMIHEVRKTSISYDRGETLEGVSTMAFALDTIFGRF-AVSLLVPTARFKKHEA 298
>gi|317049018|ref|YP_004116666.1| IclR family transcriptional regulator [Pantoea sp. At-9b]
gi|316950635|gb|ADU70110.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
Length=261
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/230 (40%), Positives = 127/230 (56%), Gaps = 2/230 (0%)
Query 6 QDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASR 65
+D ++GGIQVIARAA++L L HPGG+S EI + V + RSTV RI+ AL++ LV S
Sbjct 9 EDEKAGGIQVIARAAKILNALGEHPGGMSLGEIAQAVDLPRSTVQRIVAALDNAQLVRST 68
Query 66 GARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVP 125
GA G RLGP + ++ ++V VV + PFL LS E +ETV L+ G + +V VV
Sbjct 69 GA-GGLRLGPALLKLISSVHSDVVEVVRPFLERLSAETNETVSLARASGTQLAIVHYVVA 127
Query 126 PQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDEL 185
+ LR V +G + PLY + G+ALLA E + LT TI L + +
Sbjct 128 SRELRVVPRMGLNLPLYSTSGGRALLALESDEDVRVMVGEAYKELTEMTIKTLPQLLELI 187
Query 186 NRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREA 235
+R G +YDR E EGI + + + ++S+ VP RF EA
Sbjct 188 GEVRKTGFSYDRGETLEGISTMAVAIDTLFGRF-SISLLVPTARFRKHEA 236
>gi|226947132|ref|YP_002802205.1| multidrug efflux pump operon transcriptional regulator protein
[Azotobacter vinelandii DJ]
gi|226722059|gb|ACO81230.1| multidrug efflux pump operon transcriptional regulator protein
[Azotobacter vinelandii DJ]
Length=261
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/254 (38%), Positives = 136/254 (54%), Gaps = 2/254 (0%)
Query 6 QDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASR 65
++ + GGIQVIARAA ++R L HP GLS A I + V + RSTV RI+ ALE E LV +
Sbjct 10 EEGKVGGIQVIARAAAIMRTLGEHPQGLSLAAIAQAVKLPRSTVQRIVCALEAEYLVEAM 69
Query 66 GARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVP 125
G G +RLG + ++ + +++ + P+L LS L E+V LS G++ V+D++V
Sbjct 70 GPSGGFRLGVAVGQLVYQTQTDIISLVRPYLECLSNWLQESVSLSKQAGEKIQVIDRIVA 129
Query 126 PQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDEL 185
+ LR V +G P++ + GK LLA L LP L +T NT D AL EL
Sbjct 130 ERDLRVVFPIGVFAPMHSTSAGKVLLAGLDDAAVRDLLPDPLPQMTRNT-RDLPALLAEL 188
Query 186 NRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWV 245
IR G +D E +EGI G+V + A+SV +P R R + ALLA
Sbjct 189 AEIRETGFTFDHGECSEGISG-GSVSLDTYLGRYAISVVLPTARAARRVEAIREALLACK 247
Query 246 SKVDAWFNGTEDRK 259
++ GT R+
Sbjct 248 RDIERAIGGTACRR 261
>gi|120556399|ref|YP_960750.1| regulatory proteins, IclR [Marinobacter aquaeolei VT8]
gi|120326248|gb|ABM20563.1| regulatory protein, IclR [Marinobacter aquaeolei VT8]
Length=258
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/247 (38%), Positives = 131/247 (54%), Gaps = 3/247 (1%)
Query 5 EQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVAS 64
+D R GGIQVIARAA ++R L HP GLS AEI V + RST+ RI+ ALE EG V
Sbjct 9 HEDRRQGGIQVIARAAAIMRELGEHPDGLSLAEIARAVALPRSTIQRIIGALEAEGFVEM 68
Query 65 RGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVV 124
A G YRLGPE+ R+ R+ V++ P L ELS ++ ET+ ++ ++ V++++V
Sbjct 69 VRAEGGYRLGPELGRLLYHTRIDVISVARPLLEELSHQIGETLVFCGVEANQVLVIERIV 128
Query 125 PPQRLRAVSAVGE-SFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRD 183
+ LR V A+G P + A GKALLA++ + + L L + R L D
Sbjct 129 AERELRVVPAMGVIHVPFHTTAVGKALLASMEDSKVEKILRDTLPSGSEGVAVKRQLLAD 188
Query 184 ELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLA 243
L +IR GVA D EE I A +V + AV+ VP R + L
Sbjct 189 -LEKIRQSGVAEDYEEYMPDIAAF-SVAMDTYLGRFAVAAIVPVSRARTHRDKYLEPLKT 246
Query 244 WVSKVDA 250
+ +KV+A
Sbjct 247 FKAKVEA 253
>gi|304398292|ref|ZP_07380166.1| transcriptional regulator, IclR family [Pantoea sp. aB]
gi|304354158|gb|EFM18531.1| transcriptional regulator, IclR family [Pantoea sp. aB]
Length=259
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/238 (38%), Positives = 130/238 (55%), Gaps = 4/238 (1%)
Query 6 QDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASR 65
+D ++GGIQVIARAA++L L PGG+S EI + V + RSTV RI+ AL+ LV S
Sbjct 9 EDEKTGGIQVIARAAKILNALGEQPGGMSLGEIAQAVELPRSTVQRIVAALDSAELVRSS 68
Query 66 GARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVP 125
GA G RLGP + ++ ++V VV + P L +LS + +ETV L+ G + ++ VV
Sbjct 69 GA-GGLRLGPALLKLISSVHTDVVDLVSPLLEKLSSDTNETVSLARASGSQLAIIHHVVA 127
Query 126 PQRLRAVSAVGESFPLYCCANGKALLAALPPERQARAL-PSRLAPLTANTITDRAALRDE 184
+ LR V +G + PLY + G+ALL AL E+ R + LT T+ L
Sbjct 128 SRELRVVPHMGLNLPLYSTSGGRALL-ALECEKDVRTIVGDAWQELTDQTVKTLPQLLQL 186
Query 185 LNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
+ +R G+A DR E EGI + L + +VS+ VP+ RF EA +L
Sbjct 187 IREVRETGIAVDRGETLEGISTMAFALDTLFGRF-SVSLLVPSARFLRHEARFRDEML 243
>gi|120401183|ref|YP_951012.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1]
gi|119954001|gb|ABM11006.1| transcriptional regulator, IclR family [Mycobacterium vanbaalenii
PYR-1]
Length=243
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/235 (38%), Positives = 124/235 (53%), Gaps = 19/235 (8%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
R G+QV+ RAA L + PG L ++G +G+A+ST R+L AL D G A +
Sbjct 16 RDDGLQVLRRAAAALDEIATAPGRLRLVDVGTNLGLAKSTARRLLVALVDVGFAAVDDS- 74
Query 69 GPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
G Y LG + + + + + P + L+ ETVDLS+L G + VDQ+ R
Sbjct 75 GRYHLGDRLLGLTSADGSTLAARLRPVIERLALATGETVDLSVLRGRQMWFVDQIESAHR 134
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRI 188
LRAVSAVG FPL+ ANGKA LA + + A+P L DE+ +
Sbjct 135 LRAVSAVGGRFPLHDTANGKAALALMEDD----AIPD--------------GLLDEIAEV 176
Query 189 RVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLA 243
R G+AYDR+E T GI A G +R +VA+SVP P +RF +E+ + AL A
Sbjct 177 RRTGIAYDRDEHTAGISAAGIAVRLPGGHVVAISVPAPTERFRAQESTIVDALRA 231
>gi|242238667|ref|YP_002986848.1| IclR family transcriptional regulator [Dickeya dadantii Ech703]
gi|242130724|gb|ACS85026.1| transcriptional regulator, IclR family [Dickeya dadantii Ech703]
Length=244
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/225 (38%), Positives = 127/225 (57%), Gaps = 4/225 (1%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
+SGGIQVI++A ++LR+L + G+S ++ + + RSTV RI++ L +E LV + G
Sbjct 3 KSGGIQVISKAVKILRLLGSQ--GMSLGDLARQADLPRSTVQRIIDTLAEENLVET-GVC 59
Query 69 GPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
G RLG I+ +A V + L +L ETVD+S G +D+++ Q
Sbjct 60 G-VRLGWGISELAQNAYSNVAARLRHPLEKLFESTRETVDISTFHGREVLFLDRIICDQA 118
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRI 188
+R V P+Y ANGKA+L+ + E R + + L+ LT NTIT L +E+++I
Sbjct 119 VRVVPVYDRLKPMYAMANGKAMLSLMTDEEIVRLVNNDLSALTENTITGIDPLLEEIHQI 178
Query 189 RVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGR 233
R GVA DR+E EG+CA+G L + A+SV VP+ RF R
Sbjct 179 RATGVAIDRQEHAEGVCAIGIPLVVPGKQTHAISVVVPSYRFEAR 223
>gi|308187669|ref|YP_003931800.1| HTH-type transcriptional regulator yiaJ [Pantoea vagans C9-1]
gi|308058179|gb|ADO10351.1| HTH-type transcriptional regulator yiaJ [Pantoea vagans C9-1]
Length=261
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/238 (38%), Positives = 130/238 (55%), Gaps = 4/238 (1%)
Query 6 QDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASR 65
+D ++GGIQVIARAA++L L PGG+S EI + V + RSTV RI+ AL+ LV S
Sbjct 9 EDEKTGGIQVIARAAKILNALGEQPGGMSLGEIAQAVELPRSTVQRIVAALDSAELVRSS 68
Query 66 GARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVP 125
GA G RLGP + ++ ++V VV + P L +LS + +ETV L+ G + ++ VV
Sbjct 69 GA-GGLRLGPALLKLISSVHTDVVDLVSPLLEKLSSDTNETVSLARASGSQLAIIHHVVA 127
Query 126 PQRLRAVSAVGESFPLYCCANGKALLAALPPERQARAL-PSRLAPLTANTITDRAALRDE 184
+ LR V +G + PLY + G+ALL AL E+ R + LT T+ L
Sbjct 128 SRELRVVPHMGLNLPLYSTSGGRALL-ALECEKDVRTIVGDAWQELTDMTVKTLPQLLQL 186
Query 185 LNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
+ +R G+A DR E EGI + L + +VS+ VP+ RF EA +L
Sbjct 187 IREVRETGIAVDRGETLEGISTMAFALDTLFGRF-SVSLLVPSARFLRHEARFRDEML 243
>gi|42601196|gb|AAS21297.1| putative efflux pump regulator TbtR [Pseudomonas stutzeri]
Length=259
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/203 (40%), Positives = 114/203 (57%), Gaps = 1/203 (0%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
R GIQVIARA ++R L +P GLS A I + V + RSTV RI+ ALE E LV + G
Sbjct 12 RHNGIQVIARAGAIMRALGDNPQGLSLAAIAQIVDLPRSTVQRIITALEAEYLVETLGPS 71
Query 69 GPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
G +R GP + ++ + + ++T + P++ EL +L E+V +S L G +A VVD+VV +
Sbjct 72 GGFRPGPALGQLISQTQTDIITLLKPYMLELCEQLGESVCVSTLVGAKAYVVDRVVAERE 131
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRI 188
LR V +G P Y A+GKALLA L E + LP L P+ DR L +L +I
Sbjct 132 LRVVFPIGIKAPAYATASGKALLAVLADEWLQQMLPDPL-PIVTPCTPDRITLLKQLGQI 190
Query 189 RVDGVAYDREEQTEGICAVGAVL 211
VA + E EG+ + L
Sbjct 191 AEGAVAEEHGELIEGLSSFAITL 213
>gi|300717818|ref|YP_003742621.1| transcriptional regulator, IclR family [Erwinia billingiae Eb661]
gi|299063654|emb|CAX60774.1| Transcriptional regulator, IclR family [Erwinia billingiae Eb661]
Length=260
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/233 (40%), Positives = 128/233 (55%), Gaps = 4/233 (1%)
Query 4 EEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVA 63
+ +D R+GGIQVI+RAA++L L P G+S EI + V + RSTV RI+ AL+ LV
Sbjct 7 QREDERTGGIQVISRAAKILDALGNRPDGMSLGEIAQAVDLPRSTVQRIVAALDSVQLVR 66
Query 64 SRGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQV 123
S GA G RLGP + R+ T+ VV P+L L ETV L+ G + +V V
Sbjct 67 SPGA-GGVRLGPALLRLIATLHTDVVAIAQPWLQALCDATGETVSLARASGLQLAIVHYV 125
Query 124 VPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARA-LPSRLAPLTANTITDRAALR 182
V + LR V +G + PLY + GKALL AL + QARA + +T T+ L
Sbjct 126 VADRELRVVPRIGLNLPLYSTSGGKALL-ALDSDEQARAVVGDAYEAITDLTVKAFPELI 184
Query 183 DELNRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREA 235
+ L IR G++YDR E EGI + + + + ++S+ VP+ RF EA
Sbjct 185 ERLKEIRRTGLSYDRGETLEGISTMAVAIDTI-LGRFSISLLVPSTRFQKHEA 236
>gi|300714988|ref|YP_003739791.1| transcriptional regulator, IclR-type [Erwinia billingiae Eb661]
gi|299060824|emb|CAX57931.1| Transcriptional regulator, IclR-type [Erwinia billingiae Eb661]
Length=255
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/237 (40%), Positives = 131/237 (56%), Gaps = 2/237 (0%)
Query 15 VIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPYRLG 74
VIARAA +L+VL++ P GLS ++ + G+ R+TV R++ +LE + V + A G LG
Sbjct 18 VIARAAAVLKVLESCPSGLSLTQLARQCGLPRTTVYRLVASLEAQQFVM-QTAEG-VTLG 75
Query 75 PEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLRAVSA 134
P + R+A +V P + L+R ETVDL + G A +V+Q V Q LR VS
Sbjct 76 PALARLAAAAHTDIVALARPAVEALARRTRETVDLVVFRGLHAILVEQCVSDQELRVVSP 135
Query 135 VGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRVDGVA 194
VG +FP+ A GKALLAALP ++ L L T NT R AL ++ +R G+A
Sbjct 136 VGTAFPVNATAPGKALLAALPDDQLQALLSQPLEQRTVNTRVGREALLADIGSVRHKGMA 195
Query 195 YDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVSKVDAW 251
DREE G+ A+ VL E A+SV VP RF R L ALL +++++
Sbjct 196 IDREEHALGVSALAVVLALPGNERYALSVAVPTLRFDERLESLLRALLQTKAEIESL 252
>gi|315648323|ref|ZP_07901423.1| IclR family transcriptional regulator [Paenibacillus vortex V453]
gi|315276258|gb|EFU39602.1| IclR family transcriptional regulator [Paenibacillus vortex V453]
Length=253
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/222 (35%), Positives = 111/222 (50%), Gaps = 4/222 (1%)
Query 13 IQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPYR 72
IQ + RA ++L L+ +PGGL EI +++ +A+ST R+L +LE++ V G Y
Sbjct 2 IQSVTRALDILEFLKLNPGGLGVTEIAQKLDVAKSTAHRLLASLEEQDYVQKTGKDSIYS 61
Query 73 LGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLR 130
LG + MA V L +V P + +LSR+ E V L +LDG+ +D+V +R
Sbjct 62 LGLKFIEMAEVVTENLKIVDIARPLIEKLSRDTGEIVHLVMLDGNEVLYIDKVENASTIR 121
Query 131 AVSAVGESFPLYCCANGKALLAALPPERQARALPS-RLAPLTANTITDRAALRDELNRIR 189
S +G PLYC GKA+LA LP + + L + P T T+T L+ E IR
Sbjct 122 IYSQIGRRGPLYCTGVGKAILAYLPEDEVDQLLAGVMMQPFTEYTLTTLEDLKQEFQTIR 181
Query 190 VDGVAYDREEQTEGI-CAVGAVLRGVSVELVAVSVPVPAQRF 230
+ AYD EE GI C + A+S+ P R
Sbjct 182 ANAFAYDNEEHERGIRCVAAPIFDHTQKSRYAISITGPITRM 223
>gi|302872748|ref|YP_003841384.1| IclR family transcriptional regulator [Caldicellulosiruptor obsidiansis
OB47]
gi|302575607|gb|ADL43398.1| transcriptional regulator, IclR family [Caldicellulosiruptor
obsidiansis OB47]
Length=277
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/254 (32%), Positives = 128/254 (51%), Gaps = 5/254 (1%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
+Q I RA E++ L P GLS ++ +++ + ++TV RIL L + G V
Sbjct 4 NSVQSIERAFEIIEALAVEPKGLSITQLSQKLSLHKTTVHRILQTLLNRGYVHKDPQTLR 63
Query 71 YRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
Y+LG + +++ + + TE HPFL EL L+ TV L+ILDG +D++
Sbjct 64 YKLGVKFVEISSLYLNNIELKTEAHPFLRELVAMLNVTVHLAILDGTDVVYIDKIEQVNS 123
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPS-RLAPLTANTITDRAALRDELNR 187
+R S++G+ P YC A GK +L+ L E + L + L P T NTITD L E+
Sbjct 124 IRLYSSIGKRVPAYCTALGKVMLSKLSDEEVEKMLSTISLKPYTQNTITDVEKLMHEIRF 183
Query 188 IRVDGVAYDREEQTEGICAVGAVLRGVSVELV-AVSVPVPAQRF-YGREAELAGALLAWV 245
+R G A D EE EG+ + A + E++ A+S+ P ++ E+A ++
Sbjct 184 VRNRGFAVDNEELQEGVRCIAAPIYDYRGEMIAAISISAPTSVLPPHKDEEIAQKVVETA 243
Query 246 SKVDAWFNGTEDRK 259
K+ ED++
Sbjct 244 KKISHRLGYVEDKE 257
>gi|322833685|ref|YP_004213712.1| IclR family transcriptional regulator [Rahnella sp. Y9602]
gi|321168886|gb|ADW74585.1| transcriptional regulator, IclR family [Rahnella sp. Y9602]
Length=264
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/234 (36%), Positives = 125/234 (54%), Gaps = 2/234 (0%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
RSGGIQVI+RAA +L L HP G+S I V + RSTV RI+ AL +EGLV S G+
Sbjct 11 RSGGIQVISRAATILNSLGKHPQGMSLGAIANEVDLPRSTVQRIVAALAEEGLVRSEGS- 69
Query 69 GPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
G RLGP + ++ +TV V+ PFL +L ETV L G + + +V +
Sbjct 70 GGVRLGPTLLKLVSTVHTDVIAIASPFLRQLCDNTQETVSLGRASGRQIANIHSIVAERE 129
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRI 188
LR V VG + P+Y ++G+ALL+ E + L P T NT+ +L +++ +
Sbjct 130 LRVVPRVGLNLPIYSTSSGRALLSLKTDEEIRIIVGDVLEPATENTVRTLDSLLEKIASV 189
Query 189 RVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALL 242
R G+A + E G+ + + + + +VSV P R +E+++ ALL
Sbjct 190 RESGIAMEEGETVNGVTTLAIAIDTI-LGRYSVSVLFPTARRAAKESQIREALL 242
>gi|344995373|ref|YP_004797716.1| IclR family transcriptional regulator [Caldicellulosiruptor lactoaceticus
6A]
gi|344995674|ref|YP_004798017.1| IclR family transcriptional regulator [Caldicellulosiruptor lactoaceticus
6A]
gi|343963592|gb|AEM72739.1| transcriptional regulator, IclR family [Caldicellulosiruptor
lactoaceticus 6A]
gi|343963893|gb|AEM73040.1| transcriptional regulator, IclR family [Caldicellulosiruptor
lactoaceticus 6A]
Length=264
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/221 (34%), Positives = 115/221 (53%), Gaps = 6/221 (2%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
+Q I RA E++ L P GLS +E+ +++ + ++T+ RIL L G V
Sbjct 4 NSVQSIERAFEIIEALAVEPKGLSISELSQKLSLHKATIHRILQTLLSRGYVQKDPQTLR 63
Query 71 YRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
Y+LG + +++ + + TE HPFL EL L+ TV L+ILDG +D++
Sbjct 64 YKLGVKFVEISSLYLNNIELKTEAHPFLRELVAMLNATVHLAILDGSDVVYIDKIEQVNS 123
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPS-RLAPLTANTITDRAALRDELNR 187
+R S++G+ P YC A GK +L+ E + L L P T NTIT+ L DE+
Sbjct 124 IRLYSSIGKRVPAYCTALGKVMLSKFSDEEVEKMLSKISLQPYTQNTITNVEKLLDEIRT 183
Query 188 IRVDGVAYDREEQTEGICAVGAVL---RGVSVELVAVSVPV 225
+R G A D EE EG+ + A + RG + +++S PV
Sbjct 184 VRNRGFAVDNEELQEGVRCIAAPIYDYRGQMIAAISISAPV 224
>gi|312794147|ref|YP_004027070.1| IclR family transcriptional regulator [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181287|gb|ADQ41457.1| transcriptional regulator, IclR family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length=264
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/220 (34%), Positives = 115/220 (53%), Gaps = 6/220 (2%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
+Q I RA E++ L P GLS +E+ +++ + ++T+ RIL L G V
Sbjct 4 NSVQSIERAFEIIEALAVEPKGLSISELSQKLSLHKATIHRILQTLLSRGYVQKDPQTLR 63
Query 71 YRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
Y+LG + +++ + + TE HPFL EL L+ TV L+ILDG +D++
Sbjct 64 YKLGVKFVEISSLYLNNIELKTEAHPFLRELVAMLNATVHLAILDGSDVVYIDKIEQVNS 123
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPS-RLAPLTANTITDRAALRDELNR 187
+R S++G+ P YC A GK +L+ E + L + L P T NTIT+ L DE+
Sbjct 124 IRLYSSIGKRVPAYCTALGKVMLSKFSDEEVEKMLSTISLQPYTQNTITNVEKLVDEIRF 183
Query 188 IRVDGVAYDREEQTEGICAVGAVL---RGVSVELVAVSVP 224
+R G A D EE EG+ + A + RG + +++S P
Sbjct 184 VRKKGFAVDNEEFQEGVRCIAAPIYDYRGQMIAAISISAP 223
>gi|296164761|ref|ZP_06847324.1| IclR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899894|gb|EFG79337.1| IclR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=248
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/236 (42%), Positives = 129/236 (55%), Gaps = 9/236 (3%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
R GIQV+ RAA L + A PG L ++G+R+G+A+ST R+L L + GL AS A+
Sbjct 12 RDEGIQVLRRAAAALDEIAAEPGRLRLVDLGDRLGLAKSTARRLLVGLVEVGL-ASVDAQ 70
Query 69 GPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELD-ETVDLSILDGDRADVVDQVVPPQ 127
G + LG + + V P + ++R D ETVDLS+L G R VDQ+
Sbjct 71 GRFSLGDRLLGFGNSDAARVSAIFRPTIERVARATDGETVDLSVLRGGRMWFVDQIESSH 130
Query 128 RLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNR 187
RLRAVSA+G FPL ANGKA LAAL + A A SRL A+ LR E+
Sbjct 131 RLRAVSAIGVRFPLESTANGKAALAAL-DDGDAEAAISRLGREAADR------LRAEVAE 183
Query 188 IRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLA 243
IR GVA+DR++ T GI A R +VA+SVP P RF +E + AL A
Sbjct 184 IRRTGVAFDRDQHTPGISAAAIARRAAGDTVVAISVPAPTDRFLEKEDRIVAALRA 239
>gi|289524178|ref|ZP_06441032.1| transcriptional regulator, IclR family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502834|gb|EFD23998.1| transcriptional regulator, IclR family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length=254
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/225 (38%), Positives = 121/225 (54%), Gaps = 9/225 (4%)
Query 11 GGIQVIARAAELLRVLQ--AHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
I+V+ RA +++ L P LS EI +++ + ++TV RILN LE+ LV
Sbjct 5 ANIRVLERAVDVMNCLAELGQPSSLS--EIVDKISLPKTTVFRILNTLEEHSLVVR--CN 60
Query 69 GPYRLGPEITRMATTVR-LGVVTEM-HPFLTELSRELDETVDLSILDGDRADVVDQVVPP 126
G Y +GP + A+ + V+ E+ P+L EL ETV L DG+ A ++++ P
Sbjct 61 GQYAIGPAVLFWASAYKGQNVLLEIAKPYLVELWDFTRETVHLISFDGEEAYYIEKLDTP 120
Query 127 QRLRAVSAVGESFPLYCCANGKALLAALPPER-QARALPSRLAPLTANTITDRAALRDEL 185
+R S +G LYC A GKA+LA+L E A +RL T NTI DR L EL
Sbjct 121 HPVRMHSRIGAHLTLYCTAAGKAILASLSKEELDAYLRKTRLVSKTPNTIVDRENLMAEL 180
Query 186 NRIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRF 230
++IR +G + D +E EGIC VGA + + A+SV PA RF
Sbjct 181 SKIRQEGFSKDLQENEEGICCVGAAILQNGRPVGAISVSAPAYRF 225
>gi|325961669|ref|YP_004239575.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
gi|323467756|gb|ADX71441.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
Length=270
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/226 (39%), Positives = 126/226 (56%), Gaps = 5/226 (2%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
+SGG+Q + RA +L +L A G S +EI E +G+ +STVSR+L +L +V R
Sbjct 17 QSGGVQSVDRALTVLEIL-AREGHASVSEIAEEMGIHKSTVSRLLGSLVTREMVHQNSDR 75
Query 69 GPYRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPP 126
G Y+LG I R+A+++ RL +V E P L L+ E ETV+L++L + A VDQ + P
Sbjct 76 GKYQLGFGILRLASSIPGRLSLVREARPVLEALAEEFKETVNLAVLRSNYAVNVDQAMGP 135
Query 127 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALP-SRLAPLTANTITDRAALRDEL 185
L VG PL+ ++GK LLAALP E + R L + L P T TIT+R L +L
Sbjct 136 STLATYDWVGNLTPLHATSSGKVLLAALPAEERDRILKETGLPPRTPRTITNRKELETQL 195
Query 186 NRIRVDGVAYDREEQTEGICAVGA-VLRGVSVELVAVSVPVPAQRF 230
+ +G REE G+ AV V + + A+S+ PA RF
Sbjct 196 IDVAREGYGVVREEFEIGLAAVAVPVHNHLGAVIGAISISGPAFRF 241
>gi|157369577|ref|YP_001477566.1| IclR family transcriptional regulator [Serratia proteamaculans
568]
gi|157321341|gb|ABV40438.1| transcriptional regulator, IclR family [Serratia proteamaculans
568]
Length=259
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/231 (37%), Positives = 121/231 (53%), Gaps = 3/231 (1%)
Query 7 DTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRG 66
D ++GGIQVI RAA++L L A P G+S EI V + RSTV RI+NAL+ LV RG
Sbjct 10 DEKTGGIQVITRAAKILDALGAKPNGMSLGEIALAVDLPRSTVQRIVNALDSVQLV--RG 67
Query 67 ARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPP 126
G RLGP + R+ +V +V+ P+L L ETV L G + VV +V
Sbjct 68 GAGGVRLGPSLLRLIASVHTEMVSIATPWLQALCDATGETVSLGRASGLQLAVVHYIVAD 127
Query 127 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELN 186
+ LR V +G + PLY + G+ALLA + L +T T+ D AL L
Sbjct 128 RELRVVPRIGMNLPLYSTSGGRALLALNSDDAARDLLGEAYRAVTDLTVRDFPALLQHLT 187
Query 187 RIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAEL 237
IR G+++DREE EG+ + + + + ++S+ VP+ R EA
Sbjct 188 EIRRTGLSFDREETLEGVSTMAVAIDTI-LGRFSISLLVPSTRLAKNEARF 237
>gi|312136092|ref|YP_004003430.1| IclR family transcriptional regulator [Caldicellulosiruptor owensensis
OL]
gi|311776143|gb|ADQ05630.1| transcriptional regulator, IclR family [Caldicellulosiruptor
owensensis OL]
Length=265
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/254 (32%), Positives = 127/254 (50%), Gaps = 5/254 (1%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
+Q I RA E++ L P GLS +E+ +++ + ++TV RIL L G V
Sbjct 4 NSVQSIERAFEIIEALAVEPKGLSISELSQKLSLHKTTVHRILQTLLSRGYVHKDPQTLR 63
Query 71 YRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
Y+LG + +++ + + TE HPFL EL L+ TV L+ILDG +D++
Sbjct 64 YKLGVKFVEISSLYLNNIELKTEAHPFLRELVAMLNVTVHLAILDGTDVVYIDKIEQVNS 123
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPS-RLAPLTANTITDRAALRDELNR 187
+R S++G+ P YC A GK +L+ E + L + L P T NTITD L E+
Sbjct 124 IRLYSSIGKRVPAYCTALGKVMLSKFSDEEVEKMLSTIFLQPYTQNTITDVEKLVYEIRT 183
Query 188 IRVDGVAYDREEQTEGICAVGAVLRGVSVELV-AVSVPVPAQRF-YGREAELAGALLAWV 245
+R G A D EE EG+ + A + E++ A+S+ P ++ E+A ++
Sbjct 184 VRNRGFAVDNEELQEGVRCIAAPIYDYRGEMIAAISISAPTSVLPPHKDEEIAQKVVETA 243
Query 246 SKVDAWFNGTEDRK 259
K+ E++K
Sbjct 244 KKISHRLGYVEEKK 257
>gi|169631567|ref|YP_001705216.1| IclR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169243534|emb|CAM64562.1| Putative transcriptional regulator, IclR family [Mycobacterium
abscessus]
Length=239
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/238 (34%), Positives = 129/238 (55%), Gaps = 0/238 (0%)
Query 13 IQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPYR 72
+ V+ RAA++L L GLS E+ E G+ +S+V RI+ L V + G G Y+
Sbjct 1 MSVLTRAAQILDALAESNSGLSVRELAEATGLPKSSVHRIVQELTVSQYVMAGGRGGSYQ 60
Query 73 LGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLRAV 132
LGP + ++ R V M + ++RE++E +DL++L G +++Q+ + L V
Sbjct 61 LGPGLLKLGLNNRRQFVAPMRKAIATVAREVNENIDLAMLSGGELVIIEQIATVRNLPTV 120
Query 133 SAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRVDG 192
+ VG +F L+ + GKALL+ LPP++ LP+ L T NTITD AL EL+ +R G
Sbjct 121 TVVGRTFALHASSIGKALLSQLPPDQVRNMLPADLEVFTTNTITDVTALLRELDDVRSTG 180
Query 193 VAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVSKVDA 250
VA+D EE GI +V L + A+++ P RF R+ + AL + + ++
Sbjct 181 VAFDHEEHDVGISSVAVPLPHPAAIPQAMAIVAPTPRFAQRKTKYVAALDSLTKRANS 238
>gi|91776908|ref|YP_546664.1| IclR family transcriptional regulator [Methylobacillus flagellatus
KT]
gi|91710895|gb|ABE50823.1| transcriptional regulator, IclR family [Methylobacillus flagellatus
KT]
Length=249
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/223 (35%), Positives = 124/223 (56%), Gaps = 6/223 (2%)
Query 10 SGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARG 69
+ GIQVI++A+ +LR+L +P GLS A+I E + RSTV RI+ ALE+E LV+ R
Sbjct 5 THGIQVISKASLILRILAKNPLGLSLAKIAEIAHLPRSTVQRIVKALEEEELVSMLEGRR 64
Query 70 PYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRL 129
++LG ++ ++ +++ M P L LS E++ETV LS + +++V+ ++V + L
Sbjct 65 GFKLGMAFGQLMHETQIDIISVMRPHLERLSSEVNETVVLSSISAQQSNVIYRIVAERDL 124
Query 130 RAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIR 189
R V +G LY +GK LLA L + + + LT T + L+D L +IR
Sbjct 125 RVVPTLGSVHSLYTTVDGKLLLAHLKDDEVLQRIGDDYPRLTGQTKDIKDLLKD-LAQIR 183
Query 190 VDGVAYDREEQTEGICAVGAVLRGVSVEL--VAVSVPVPAQRF 230
G + DR E GI A+G G+ L A+++ P+ RF
Sbjct 184 KQGFSIDRNEHINGISAIGV---GIDTFLGRYAIAIVTPSCRF 223
>gi|82408423|gb|ABB73049.1| putative IclR-family transcriptional regulator [Arthrobacter
globiformis]
Length=268
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/237 (36%), Positives = 129/237 (55%), Gaps = 13/237 (5%)
Query 2 SAEEQDTRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGL 61
+ + D + GG+Q + RA ++L +L A G ++I + +G+ +STVSR+L +L +
Sbjct 9 TGRDPDAQGGGVQSVDRALQILEIL-ARDGHAGVSDIADEMGVHKSTVSRLLGSLVSREI 67
Query 62 VASRGARGPYRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADV 119
V RG Y+LG I R+A+++ RL +V E P L L+ + ETV+L++L + A
Sbjct 68 VRQNNDRGKYQLGFGILRLASSIPGRLSLVHEARPILESLADQYKETVNLAVLRSNYAVN 127
Query 120 VDQVVPPQRLRAVSAVGESFPLYCCANGKALLAALPPERQAR-----ALPSRLAPLTANT 174
VDQ + P L VG PL+ ++GK LLAALP E ++R LP+R T T
Sbjct 128 VDQAMGPSTLATSDWVGSLTPLHATSSGKVLLAALPAEERSRILQEAGLPAR----TPRT 183
Query 175 ITDRAALRDELNRIRVDGVAYDREEQTEGICAVGA-VLRGVSVELVAVSVPVPAQRF 230
ITDR L ++L + +G A EE G+ AV V + +VS+ PA RF
Sbjct 184 ITDRDTLENQLLDVSHNGYAIVHEEFEIGLTAVAVPVYNHFGTVIGSVSISGPAFRF 240
>gi|302388968|ref|YP_003824789.1| transcriptional regulator, IclR family [Thermosediminibacter
oceani DSM 16646]
gi|302199596|gb|ADL07166.1| transcriptional regulator, IclR family [Thermosediminibacter
oceani DSM 16646]
Length=261
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/234 (36%), Positives = 121/234 (52%), Gaps = 4/234 (1%)
Query 9 RSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGAR 68
++ I+ +A+A +++ VL G L+ EI ++G+A+STV +L+ L D G V
Sbjct 3 KTSQIRSVAKALKIVDVLAEAKGELALGEIATKLGLAKSTVHGLLSTLRDFGYVEQSVFT 62
Query 69 GPYRLGPEITRMATTVRLG--VVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPP 126
G Y+LG + + V G V + P++ L EL ETV L +LD +D+
Sbjct 63 GKYKLGLRLFELGNIVAHGWDVHSVAAPYIQRLVDELGETVHLVVLDKGEVLYIDKRESR 122
Query 127 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAP-LTANTITDRAALRDEL 185
LR VS VG P +C GK LLA+LPP+ R + ++ P T NTITD L EL
Sbjct 123 HSLRIVSQVGMRLPAHCTGVGKVLLASLPPDEVRRIVAAKGLPRFTKNTITDLETLEKEL 182
Query 186 NRIRVDGVAYDREEQTEGICAVGAVLRGVSVELV-AVSVPVPAQRFYGREAELA 238
R+R G A D EE + + V A +R S ++ A+S+ P R G + LA
Sbjct 183 ARVRAQGYAIDNEEIMDSLRCVAAPIRDHSGKVCAAISISGPVARLEGEKLALA 236
>gi|118472632|ref|YP_886822.1| IclR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118173919|gb|ABK74815.1| transcriptional regulator, IclR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=240
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/219 (37%), Positives = 112/219 (52%), Gaps = 2/219 (0%)
Query 16 IARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGA-RGPYRLG 74
I R+ +L L L+ +E+ R G+ RSTV RI+ +LE L RG R Y LG
Sbjct 4 IGRSTLVLDALAEASKPLTLSELATRTGLPRSTVHRIVQSLE-RSLYLVRGVDRHGYSLG 62
Query 75 PEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLRAVSA 134
P + + L ++ P L L RE+ E V+L+I G VVDQ+ RL V+
Sbjct 63 PGLLKFGMNAHLRLLAGNRPLLARLVREVGENVELAIFSGREVVVVDQLASVNRLHGVTK 122
Query 135 VGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRVDGVA 194
VG+SF L+ G ALLA LP ++ A L L T +T+TD A+ L+ +R +A
Sbjct 123 VGKSFSLHASCIGLALLAHLPDDQVAGLLSPPLQRFTEHTVTDLPAIMGRLDEVRRTQIA 182
Query 195 YDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGR 233
D EE GICAV G + L AV+V +P RF +
Sbjct 183 VDTEEHDVGICAVATAFPGPTGALQAVAVVMPTARFRAK 221
>gi|169244310|gb|ACA50468.1| IclR family regulatory protein [Pseudomonas fluorescens]
Length=263
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/197 (39%), Positives = 112/197 (57%), Gaps = 5/197 (2%)
Query 31 GGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGPYRLGPEITRMATTVRLGVVT 90
GGLS + I V + RSTV RI+ ALE+E LV S G G +RLG + ++ + +++
Sbjct 32 GGLSLSAIANIVKLPRSTVHRIIVALEEEHLVESIGPSGGFRLGHALGQLIHETQADIIS 91
Query 91 EMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQRLRAVSAVGESFPLYCCANGKAL 150
+ +L L ++ E+V L+ L GD+ +VVD ++ + LR V +VG P Y A GK +
Sbjct 92 SVREYLDNLCAQVRESVCLATLAGDKVNVVDCIIIERELRVVFSVGIEAPAYATAGGKIM 151
Query 151 LAALPPERQARALPSRLAPLTANTITDRAALRDELNRIRVDGVAYDREEQTEGIC----A 206
LAAL + LP +L LT NT+T RA L ++L IR VA D +E EG+C A
Sbjct 152 LAALREDALQNILPKKLPELTENTLT-RAQLIEQLKDIRACAVAVDDQEHLEGVCTFAVA 210
Query 207 VGAVLRGVSVELVAVSV 223
+ L S+ ++A S+
Sbjct 211 LETYLGNYSISIIAPSI 227
>gi|92112201|ref|YP_572129.1| IclR family transcriptional regulator [Chromohalobacter salexigens
DSM 3043]
gi|91795291|gb|ABE57430.1| transcriptional regulator, IclR family [Chromohalobacter salexigens
DSM 3043]
Length=284
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/250 (36%), Positives = 125/250 (50%), Gaps = 5/250 (2%)
Query 10 SGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARG 69
SG Q + R +L L A PGGL+ ++I + VG+A ST R+L AL +G +A G
Sbjct 28 SGHSQSLVRGLNILEGLAAAPGGLALSDIAQIVGLAPSTTHRLLQALHQQGFIAQDAEMG 87
Query 70 PYRLGPEITRMATTVRLG--VVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQ 127
+ + + R+ V PFL +L+ E +ET +L I D A + Q PQ
Sbjct 88 VWHIDAKTFRVGNAFLEARDFVATARPFLHQLTAETEETANLGIRDQGMAVFLAQSESPQ 147
Query 128 RLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSR-LAPLTANTITDRAALRDELN 186
+R ++ +G PL+ GKALLA LP + R L +R L +T NT+ + LRD L
Sbjct 148 MMRMITRLGSRAPLHASGVGKALLAWLPRDEVERILHTRGLDKVTPNTLDTPSRLRDALG 207
Query 187 RIRVDGVAYDREEQTEGICAVGAVLRGVS-VELVAVSVPVPAQRF-YGREAELAGALLAW 244
IR G A DREE G+ V A L + + L A+SV PA R R AEL G +
Sbjct 208 EIRRQGYACDREEHAIGLNCVAATLHDENGLPLAAISVSGPAARIPEARLAELGGLVSRA 267
Query 245 VSKVDAWFNG 254
++ A G
Sbjct 268 AREITARLGG 277
>gi|269854703|gb|ACZ51375.1| putative IclR family transcriptional regulator [Pseudomonas sp.
NyZ402]
Length=251
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/203 (38%), Positives = 113/203 (56%), Gaps = 4/203 (1%)
Query 7 DTRSG--GIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVAS 64
D+ SG IQVI RAA +LR L++ P GLS I +R+ + RSTV R+++AL E L+
Sbjct 3 DSSSGRSAIQVITRAAAILRCLESEPHGLSLGAIAKRIELPRSTVQRLVDALVIEELLEL 62
Query 65 RGARGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVV 124
GA G LGP + R+A+ + + + PFL +L++ ET L +GD ++ VV
Sbjct 63 HGAGG-VCLGPALMRLASHSHVDITQQARPFLEKLAQMTGETAVLETANGDNLLILHSVV 121
Query 125 PPQRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDE 184
Q LR G F +Y + GK LL+ + + R + +L PLT+ T T L +
Sbjct 122 SGQALRVSPVAGNMFSIYATSGGKILLSRMDDDAVIRLIGPQLKPLTSQTPTLNQLLA-Q 180
Query 185 LNRIRVDGVAYDREEQTEGICAV 207
L +IR +G AYD +E T G+ AV
Sbjct 181 LKQIRKEGFAYDFDEHTPGVGAV 203
>gi|146295413|ref|YP_001179184.1| regulatory protein IclR [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145408989|gb|ABP65993.1| regulatory protein, IclR [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length=255
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/221 (33%), Positives = 115/221 (53%), Gaps = 6/221 (2%)
Query 11 GGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGARGP 70
+Q I RA E++ L P GLS ++ +++ + ++TV RIL L + G V
Sbjct 4 NSVQSIERAFEIIEALAVEPKGLSITQLSQKLSLHKTTVHRILQTLLNRGYVQKDPQTLR 63
Query 71 YRLGPEITRMATTV--RLGVVTEMHPFLTELSRELDETVDLSILDGDRADVVDQVVPPQR 128
Y+LG + +++ + + TE HPFL EL L+ TV L+ILDG +D++
Sbjct 64 YKLGVKFVEISSLYLNNIELRTEAHPFLRELVAMLNVTVHLAILDGCDVVYIDKIEQVNS 123
Query 129 LRAVSAVGESFPLYCCANGKALLAALPPERQARALPS-RLAPLTANTITDRAALRDELNR 187
+R S++G+ P YC A GK +L+ + + L + L T NTIT+ L DE+
Sbjct 124 IRLYSSIGKRVPAYCTALGKVMLSKFSDQEVEKILSTISLQSYTQNTITNIEKLLDEIRS 183
Query 188 IRVDGVAYDREEQTEGICAVGAVL---RGVSVELVAVSVPV 225
+R G A D EE EG+ + A + RG + +++S PV
Sbjct 184 VRDRGFAVDNEELQEGVRCIAAPIYDYRGEMIAAISISAPV 224
Lambda K H
0.318 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 382276364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40