BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1720c
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycob... 256 7e-67
gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-... 253 5e-66
gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311... 249 1e-64
gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_1670... 214 4e-54
gi|217979588|ref|YP_002363735.1| PilT protein domain-containing ... 97.1 8e-19
gi|297625029|ref|YP_003706463.1| PilT domain-containing protein ... 84.0 6e-15
gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Fra... 81.3 5e-14
gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Fr... 80.9 6e-14
gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [... 77.4 7e-13
gi|336178825|ref|YP_004584200.1| PilT protein domain-containing ... 77.4 7e-13
gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [The... 76.6 1e-12
gi|271964589|ref|YP_003338785.1| PilT protein domain-containing ... 76.3 1e-12
gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_179... 75.9 2e-12
gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propi... 73.2 1e-11
gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin compon... 72.8 2e-11
gi|284992100|ref|YP_003410654.1| PilT protein domain-containing ... 71.6 4e-11
gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin co... 71.6 4e-11
gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin co... 71.2 4e-11
gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin compon... 70.9 6e-11
gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin compon... 70.5 8e-11
gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus ... 67.4 6e-10
gi|336179019|ref|YP_004584394.1| PilT protein domain-containing ... 65.1 4e-09
gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin compon... 64.3 5e-09
gi|269957933|ref|YP_003327722.1| PilT protein domain-containing ... 63.2 1e-08
gi|256371478|ref|YP_003109302.1| PilT protein domain-containing ... 62.4 2e-08
gi|284992067|ref|YP_003410621.1| PilT domain-containing protein ... 62.4 2e-08
gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycoba... 62.0 2e-08
gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651... 62.0 3e-08
gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [... 61.2 5e-08
gi|333025632|ref|ZP_08453696.1| putative PilT protein-like prote... 58.5 3e-07
gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 ... 57.4 6e-07
gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_1022... 56.6 1e-06
gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycob... 56.6 1e-06
gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, c... 56.2 2e-06
gi|145225776|ref|YP_001136454.1| PilT domain-containing protein ... 56.2 2e-06
gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641... 54.3 5e-06
gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [J... 53.9 7e-06
gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161... 53.1 1e-05
gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355... 53.1 1e-05
gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Fr... 52.8 2e-05
gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [... 52.4 2e-05
gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycoba... 52.4 2e-05
gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kit... 52.0 3e-05
gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Stre... 51.6 4e-05
gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-... 51.2 4e-05
gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 ... 51.2 5e-05
gi|339444248|ref|YP_004710252.1| hypothetical protein EGYY_06500... 48.5 3e-04
gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia ... 48.1 4e-04
gi|336177502|ref|YP_004582877.1| PilT protein domain-containing ... 46.2 0.001
gi|327310250|ref|YP_004337147.1| PilT protein domain-containing ... 43.1 0.013
>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=129
Score = 256 bits (654), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 128/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL
Sbjct 1 MIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG
Sbjct 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
Query 121 HNAEIELVA 129
HNAEIELVA
Sbjct 121 HNAEIELVA 129
>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129
Score = 253 bits (647), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/129 (99%), Positives = 128/129 (99%), Gaps = 0/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+IVLDASAAVELMLTTPAGAAVARRLRGETV APAHFDVEVIGAIRQAVVRQLISDHEGL
Sbjct 1 MIVLDASAAVELMLTTPAGAAVARRLRGETVRAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG
Sbjct 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
Query 121 HNAEIELVA 129
HNAEIELVA
Sbjct 121 HNAEIELVA 129
>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT
140010059]
gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129
Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/129 (97%), Positives = 126/129 (98%), Gaps = 0/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+IVLDASAAVELML TPAGAAVARRLRGETVHAPAHFDVEVIGAI QAVVRQLISDHEGL
Sbjct 1 MIVLDASAAVELMLATPAGAAVARRLRGETVHAPAHFDVEVIGAIHQAVVRQLISDHEGL 60
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG
Sbjct 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
Query 121 HNAEIELVA 129
H AEIELVA
Sbjct 121 HTAEIELVA 129
>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC
12478]
Length=129
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/129 (83%), Positives = 116/129 (90%), Gaps = 0/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+IVLDASAAVEL+L TP GAAVARRLR ETVHAPAH DVEVIGAIR+AVVR+LISDHEG+
Sbjct 1 MIVLDASAAVELVLATPPGAAVARRLRDETVHAPAHIDVEVIGAIRRAVVRRLISDHEGV 60
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
V V +FLSL +RRWP+KPF QRAYQLR+TH VAD YVALAEG GV LITCDGRLAQSHG
Sbjct 61 VAVADFLSLQIRRWPIKPFAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQSHG 120
Query 121 HNAEIELVA 129
H+AEIELVA
Sbjct 121 HDAEIELVA 129
>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris
BL2]
gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/130 (45%), Positives = 76/130 (59%), Gaps = 2/130 (1%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRL--RGETVHAPAHFDVEVIGAIRQAVVRQLISDHE 58
+IV+DASA +E +L TP+ V RL G+T+HAP DVEV IR+ + I
Sbjct 1 MIVVDASALLEALLRTPSAKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRAR 60
Query 59 GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
G + + + LP+RR+P R + LR+ T D AYVALAE L PL+T D RLA +
Sbjct 61 GGLALADLADLPLRRYPHDFLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA 120
Query 119 HGHNAEIELV 128
GH A IELV
Sbjct 121 AGHRARIELV 130
>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/129 (41%), Positives = 72/129 (56%), Gaps = 2/129 (1%)
Query 1 VIVLDASAAVELMLT-TPAGAAVARR-LRGETVHAPAHFDVEVIGAIRQAVVRQLISDHE 58
+IVLDASA V +L PA A + R LR T+H P FD+EV+ A+R+ ++ IS
Sbjct 1 MIVLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPAR 60
Query 59 GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
L R P P +R ++LR+ + D YVALAE L PLIT D RL ++
Sbjct 61 AERAFARLRELRCERHPHVPLAERVWELRANLSAYDATYVALAEILEAPLITLDARLGRA 120
Query 119 HGHNAEIEL 127
GH A++E+
Sbjct 121 PGHRAQLEV 129
>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 72/132 (55%), Gaps = 4/132 (3%)
Query 1 VIVLDASAAVELML--TTPAGAAVARRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDH 57
+IV+DAS V+L+ +P A RL G + +APAH DVEVI A+R R
Sbjct 3 LIVVDASVIVDLLAGDDSPRRKAARDRLTGGDVFYAPAHLDVEVISALRGLARRTSRLAE 62
Query 58 EGLVVVVNFLSLPVRRWPLK-PFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLA 116
++ + + LP+RR L P QR ++LR T T D YVALAE + L+TCD + A
Sbjct 63 HTPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKYA 122
Query 117 QSHGHNAEIELV 128
+ G IEL+
Sbjct 123 ATAGPRCAIELI 134
>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/125 (38%), Positives = 68/125 (55%), Gaps = 1/125 (0%)
Query 2 IVLDASAAVELMLTT-PAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+VLDASAAV L+ PAG VA+ + G + AP E +R+ ++ ++ E
Sbjct 9 VVLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEAT 68
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
+ + L++PVRR RA+ LR+ T D AYVALAE L PL+T D RL ++ G
Sbjct 69 LAHADLLAMPVRRLAYASLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRASG 128
Query 121 HNAEI 125
E+
Sbjct 129 PRCEV 133
>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 71/130 (55%), Gaps = 1/130 (0%)
Query 1 VIVLDASA-AVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
VIV+DAS AV L G RL ET+ AP D+EV+ R+ V + +
Sbjct 28 VIVVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAKRMPARRA 87
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
V + +LP+RR +P R ++L+ T D AYVALAE L + L+T D RL+++
Sbjct 88 ASAVADLTNLPLRRSSHQPLLHRVWELQHVLTAYDAAYVALAEALDIVLVTADARLSRAS 147
Query 120 GHNAEIELVA 129
G + EIE+V+
Sbjct 148 GTHCEIEVVS 157
>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/124 (34%), Positives = 67/124 (55%), Gaps = 1/124 (0%)
Query 3 VLDASAAVELMLTTPAGAAVARRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
V+D S ++++ + +RL T+HAP H DVEV +R + I+DH G
Sbjct 6 VVDCSLVIDVLSVRNGDEVLRQRLSAPRTLHAPHHLDVEVASTVRGLAAGKKITDHRGEQ 65
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGH 121
++ ++ L + R P+ P+ R ++LR D AY+ALAE LG L+T D ++ + GH
Sbjct 66 MLADYARLRITRHPVWPYHPRLWELRHNLGAYDAAYIALAEALGCELLTGDTKIKNAAGH 125
Query 122 NAEI 125
A +
Sbjct 126 RATV 129
>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/119 (39%), Positives = 65/119 (55%), Gaps = 0/119 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+VLDASAA E +L TP G VA + G+ + APA D EV+ +R+A + +S
Sbjct 4 LVLDASAAAEYLLRTPLGRQVAALVEGKRLFAPALLDAEVLAVVRKATLSGRLSPTRAQE 63
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
+ + S P+ R P A+ LR T D YVALA+ L P++T DG LA++ G
Sbjct 64 ALEDLFSWPLFRVDHGPLLLPAFALRDRLTAYDALYVALAQRLSAPILTADGPLARAPG 122
>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum
DSM 43021]
gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (38%), Positives = 67/128 (53%), Gaps = 5/128 (3%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVV----RQLISDH 57
+V+DAS L+ + +RL VHAPA DVE+ +R VV IS+
Sbjct 3 LVVDASIVFRLLANVKGDDLLRQRL-ARKVHAPALIDVEIASVVRGHVVTGKPEVRISEA 61
Query 58 EGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ 117
+++ + L + R P+ P R +LR+ T DG YVALAE LGVP++T D + A
Sbjct 62 RAQIMLERYAQLKIVRHPMLPLQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAKFAG 121
Query 118 SHGHNAEI 125
S GH EI
Sbjct 122 STGHRTEI 129
>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/126 (39%), Positives = 67/126 (54%), Gaps = 1/126 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+IV+DA+A V+ + + L E +HAPA D EV+ A+R +S
Sbjct 1 MIVVDAAALVDALTGVDGTDELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAH 60
Query 61 VVVVNFLSLPVRRWP-LKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
+ +F +L +RRWP RA+ LR T D AYVALAE L ++T D RLA+S
Sbjct 61 DALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARSG 120
Query 120 GHNAEI 125
GH+ EI
Sbjct 121 GHSVEI 126
>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA1]
gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes
6609]
Length=129
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/114 (34%), Positives = 63/114 (56%), Gaps = 0/114 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+V+DAS E+++ + G A ++ GE AP H E+ +R + LI+D E +
Sbjct 3 LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F + V +P++P A+++R + D YV LA LGV L+TCD RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL 116
>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL056PA1]
Length=129
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/114 (34%), Positives = 63/114 (56%), Gaps = 0/114 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+V+DAS E+++ + G A ++ GE AP H E+ +R + LI+D E +
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F +L V +P++P A+++R + D YV LA LG L+TCD RL
Sbjct 63 ILSDFRALKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/129 (38%), Positives = 65/129 (51%), Gaps = 1/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARR-LRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
+IV+DAS V +L G AR + G+ HAP DVEV+ A+R+ + + D
Sbjct 1 MIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAA 60
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
V LPV R RA QLR + T DG YVALAE LG L+T D RL+ +
Sbjct 61 RDAVTAMRDLPVIRHGHDLLLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAP 120
Query 120 GHNAEIELV 128
G + +V
Sbjct 121 GLRCPVSVV 129
>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
55 more sequence titles
gi|289153552|gb|EFD02266.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289158831|gb|EFD07031.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|291376345|gb|ADE00200.1| PIN domain protein [Propionibacterium acnes SK137]
gi|313763711|gb|EFS35075.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA1]
gi|313771728|gb|EFS37694.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL074PA1]
gi|313793743|gb|EFS41774.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA1]
gi|313803055|gb|EFS44263.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA2]
gi|313808461|gb|EFS46928.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA2]
gi|313810550|gb|EFS48264.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA1]
gi|313816972|gb|EFS54686.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA1]
gi|313818114|gb|EFS55828.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA2]
gi|313820974|gb|EFS58688.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA1]
gi|313823954|gb|EFS61668.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA2]
gi|313829774|gb|EFS67488.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA2]
gi|313831592|gb|EFS69306.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL007PA1]
gi|313839318|gb|EFS77032.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL086PA1]
gi|314916534|gb|EFS80365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA4]
gi|314918808|gb|EFS82639.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA1]
gi|314921013|gb|EFS84844.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA3]
gi|314926999|gb|EFS90830.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA3]
gi|314932415|gb|EFS96246.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL067PA1]
gi|314956724|gb|EFT00976.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA1]
gi|314959635|gb|EFT03737.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA1]
gi|314961820|gb|EFT05921.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA2]
gi|314964805|gb|EFT08905.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA1]
gi|314968688|gb|EFT12786.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL037PA1]
gi|314974943|gb|EFT19038.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA1]
gi|314977963|gb|EFT22057.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL045PA1]
gi|314979647|gb|EFT23741.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA2]
gi|314984627|gb|EFT28719.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA1]
gi|314988284|gb|EFT32375.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA2]
gi|314990373|gb|EFT34464.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA3]
gi|315079229|gb|EFT51232.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA2]
gi|315082308|gb|EFT54284.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL078PA1]
gi|315083723|gb|EFT55699.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA2]
gi|315087362|gb|EFT59338.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA3]
gi|315089779|gb|EFT61755.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA1]
gi|315095553|gb|EFT67529.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL038PA1]
gi|315100186|gb|EFT72162.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA2]
gi|315102508|gb|EFT74484.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA1]
gi|315109573|gb|EFT81549.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA2]
gi|327326558|gb|EGE68346.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA3]
gi|327332823|gb|EGE74555.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA2]
gi|327447647|gb|EGE94301.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA2]
gi|327448521|gb|EGE95175.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA1]
gi|327449624|gb|EGE96278.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA2]
gi|327455832|gb|EGF02487.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA3]
gi|327456075|gb|EGF02730.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL092PA1]
gi|327457983|gb|EGF04638.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA2]
gi|328757147|gb|EGF70763.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA1]
gi|328757341|gb|EGF70957.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL020PA1]
gi|328757527|gb|EGF71143.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA2]
gi|328762101|gb|EGF75606.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL099PA1]
gi|332676453|gb|AEE73269.1| hypothetical protein PAZ_c21460 [Propionibacterium acnes 266]
gi|340774022|gb|EGR96512.1| PIN domain protein [Propionibacterium acnes SK182]
Length=129
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/114 (33%), Positives = 62/114 (55%), Gaps = 0/114 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+V+DAS E+++ + G A ++ GE AP H E+ +R + LI+D E +
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F + V +P++P A+++R + D YV LA LG L+TCD RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
7 more sequence titles
gi|282581983|gb|EFB87366.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|313813817|gb|EFS51531.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA1]
gi|314924524|gb|EFS88355.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL001PA1]
gi|315102935|gb|EFT74911.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA2]
gi|327335217|gb|EGE76927.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL097PA1]
gi|333766217|gb|EGL43529.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|340768857|gb|EGR91382.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
Length=129
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/114 (33%), Positives = 62/114 (55%), Gaps = 0/114 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+V+DAS E+++ + G A ++ GE AP H E+ +R + LI+D E +
Sbjct 3 LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F + V +P++P A+++R + D YV LA LG L+TCD RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA2]
gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA3]
gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA4]
gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL060PA1]
gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL103PA1]
Length=129
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/114 (33%), Positives = 62/114 (55%), Gaps = 0/114 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+V+DAS E+++ + G A ++ GE AP H E+ +R + LI+D E +
Sbjct 3 LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLLAEIAHVVRNLSLGHLITDAEAMR 62
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F + V +P++P A+++R + D YV LA LG L+TCD RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA1]
Length=129
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/114 (33%), Positives = 61/114 (54%), Gaps = 0/114 (0%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
+V+DAS E+++ + G A ++ GE AP H E+ +R LI+D E +
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSSGHLITDAEAMR 62
Query 62 VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F + V +P++P A+++R + D YV LA LG L+TCD RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/96 (37%), Positives = 55/96 (58%), Gaps = 0/96 (0%)
Query 33 APAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTV 92
AP D+EV +R+A + D + + + LP+RR +P +R ++LR T T
Sbjct 4 APEVIDLEVASVLRRAAASGRLPDRRADLAWNDLIDLPLRRAGHRPLLRRCWELRHTVTS 63
Query 93 ADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
D AYVALAE L + L+T D RL+++ G E+E++
Sbjct 64 YDAAYVALAEALDIVLVTADARLSRAPGITCEVEVL 99
>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/129 (36%), Positives = 67/129 (52%), Gaps = 2/129 (1%)
Query 3 VLDASAAVELMLTTPAGA-AVARRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
V+D SA V + AG AV RRL G E++ AP D E++ A+ + I+ E
Sbjct 7 VIDCSALVRTLTDQGAGGVAVRRRLAGLESLAAPGLLDYEIVSALFGMLRGNKITKRETT 66
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
V ++ LP+ R +R ++L + D YVALAE LG+PLIT D R+A+S
Sbjct 67 KAVADYQILPLVRHETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARSGT 126
Query 121 HNAEIELVA 129
+E+ A
Sbjct 127 AACAVEVFA 135
>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA2]
gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL044PA1]
gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA3]
gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
humerusii P08]
Length=197
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 61/115 (54%), Gaps = 0/115 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+V++ S E+++ + G A ++ GE AP H E+ +R + QLI+D E +
Sbjct 2 TLVVEVSVLAEMLVGSTVGCAAWQQWGGEEFIAPQHLSAEIAHVVRNLSLGQLITDAEAM 61
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
++ +F + V +P++P A+++R + D YV LA LG L+T D RL
Sbjct 62 QILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTRDHRL 116
>gi|269957933|ref|YP_003327722.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269306614|gb|ACZ32164.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM
15894]
Length=138
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/118 (34%), Positives = 62/118 (53%), Gaps = 2/118 (1%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGE--TVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
+V+DASA E ++++ AG A+ LR +H P VE + +R V+ ++
Sbjct 5 LVVDASALAEYLVSSAAGQAIGEELRAHDGALHVPHLAVVETVSVLRGLVLGGFLTAERA 64
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ 117
+ + LP RWP +P R ++LRS + D YVALAE L ++T D RLA+
Sbjct 65 AAALADLADLPAERWPSEPLLPRIWELRSNLSAYDATYVALAEALDADVVTRDARLAR 122
>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length=146
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (36%), Positives = 57/113 (51%), Gaps = 0/113 (0%)
Query 3 VLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVV 62
V+DASA V+L+L G AV RR+ G +HAPAH D EV+ A+ + + V
Sbjct 23 VVDASALVDLLLDNELGRAVRRRIAGHALHAPAHVDAEVLSALGRLHRADSLDAGTVEVK 82
Query 63 VVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
+ + P+ R P+ + R + D Y+ LA GVPL+T D RL
Sbjct 83 LRELAAAPIERHPVHDLLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRL 135
>gi|284992067|ref|YP_003410621.1| PilT domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284065312|gb|ADB76250.1| PilT domain-containing protein [Geodermatophilus obscurus DSM
43160]
Length=131
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (36%), Positives = 51/95 (54%), Gaps = 0/95 (0%)
Query 26 LRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQ 85
LRGE + AP H ++ +R+AV+ + + ++ + VR + P R ++
Sbjct 28 LRGEDLTAPTHMQIQASNVLRRAVLAGRLGVDAASLAHLDLTRMSVRSFGFDPLATRIWE 87
Query 86 LRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
L T D AYVALAE L VPL+T D RLA++ G
Sbjct 88 LHPAVTAYDAAYVALAEELAVPLVTLDRRLARASG 122
>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=133
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/113 (40%), Positives = 60/113 (54%), Gaps = 2/113 (1%)
Query 18 AGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPL 76
A A V R L E++ +AP D EV A+R+AV+ IS+ + + L R+P
Sbjct 20 ASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPH 79
Query 77 KP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
P + +QLR T D YVALA L VPL+T D RLA + G EI+LV
Sbjct 80 SPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT
140010059]
gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/113 (40%), Positives = 60/113 (54%), Gaps = 2/113 (1%)
Query 18 AGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPL 76
A A V R L E++ +AP D EV A+R+AV+ IS+ + + L R+P
Sbjct 20 ASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPH 79
Query 77 KP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
P + +QLR T D YVALA L VPL+T D RLA + G EI+LV
Sbjct 80 SPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
>gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289688362|gb|EFD55850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=133
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/113 (40%), Positives = 59/113 (53%), Gaps = 2/113 (1%)
Query 18 AGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPL 76
A A V R L E + +AP D EV A+R+AV+ IS+ + + L R+P
Sbjct 20 ASAIVLRGLLKEPISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPH 79
Query 77 KP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
P + +QLR T D YVALA L VPL+T D RLA + G EI+LV
Sbjct 80 SPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (35%), Positives = 50/99 (51%), Gaps = 0/99 (0%)
Query 31 VHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTH 90
V+APA D+E R + I++H V S P+RR + R ++LR +
Sbjct 4 VYAPALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFRVWELRHNY 63
Query 91 TVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA 129
+ D +YVALAE LG L+T D RL + G +EL+
Sbjct 64 SPYDASYVALAEQLGATLLTGDARLQRGTGKRCPVELIG 102
>gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL
2338]
gi|291003763|ref|ZP_06561736.1| hypothetical protein SeryN2_04507 [Saccharopolyspora erythraea
NRRL 2338]
gi|133914897|emb|CAM05010.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL
2338]
Length=129
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/117 (34%), Positives = 56/117 (48%), Gaps = 2/117 (1%)
Query 3 VLDASAAVELMLTTPAGAAVARRLRGE--TVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
++DASA ++L+L + + H P D EVI +R+ ++ E
Sbjct 1 MVDASAVLDLLLQLRRAHRIGELISSPFAQSHVPDTIDREVINVLRKRERSGSLTSAEAE 60
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ 117
V FL LP +PF R + LRS +V D YV+LAE L LIT D +LA+
Sbjct 61 TVFGEFLLLPFEVHDARPFAPRVWGLRSVCSVGDAYYVSLAESLDATLITSDEKLAR 117
>gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_10224 [Mycobacterium tuberculosis
H37Ra]
gi|289744262|ref|ZP_06503640.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308231586|ref|ZP_07412990.2| toxin [Mycobacterium tuberculosis SUMu001]
gi|308395796|ref|ZP_07669348.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|289684790|gb|EFD52278.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308216759|gb|EFO76158.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308367245|gb|EFP56096.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=126
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/118 (36%), Positives = 62/118 (53%), Gaps = 1/118 (0%)
Query 2 IVLDASAAVELML-TTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+V+DASA V+L+ T+ +AV RL +HAPAHFD EV+ A+ + ++
Sbjct 1 MVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 60
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
+ +PV R L A+ R T + D YV LAE G+ L+T D RLA++
Sbjct 61 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 118
>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
61 more sequence titles
Length=137
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/118 (36%), Positives = 62/118 (53%), Gaps = 1/118 (0%)
Query 2 IVLDASAAVELML-TTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
+V+DASA V+L+ T+ +AV RL +HAPAHFD EV+ A+ + ++
Sbjct 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
+ +PV R L A+ R T + D YV LAE G+ L+T D RLA++
Sbjct 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
Length=133
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/129 (38%), Positives = 70/129 (55%), Gaps = 1/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVAR-RLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
+IV+DAS + A +AR RL GE + AP D+EV R+ V +L++
Sbjct 1 MIVVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA 60
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
V + LP+RR +P +R + LR T T D AY ALAE L V L+T D RLA++
Sbjct 61 DAAVSDLADLPLRRCSHRPLLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARAP 120
Query 120 GHNAEIELV 128
G ++E++
Sbjct 121 GLACDVEVI 129
>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/129 (38%), Positives = 69/129 (54%), Gaps = 1/129 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVAR-RLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
VIV+DAS + A AR RL GE + AP D+EV R+ V +L++
Sbjct 23 VIVVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA 82
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
V + LP+RR +P +R + LR T T D AY ALAE L V L+T D RLA++
Sbjct 83 DAGVSDLEDLPLRRCSHRPLLERIWALRRTVTPYDAAYAALAEALEVVLVTADARLARAP 142
Query 120 GHNAEIELV 128
G ++E++
Sbjct 143 GLACDVEVI 151
>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT
140010059]
gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/101 (30%), Positives = 51/101 (51%), Gaps = 0/101 (0%)
Query 28 GETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLR 87
E +H P D E+ +R+ V R + +G + + L V R+P+ +R +++R
Sbjct 25 AERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRALQTWRRLAVTRYPVVGLFERIWEIR 84
Query 88 STHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
+ + D +YVALAE L L+T D RL+ + I +V
Sbjct 85 ANLSAYDASYVALAEALNCELVTADLRLSNTGQARCPITVV 125
>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/118 (31%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGET-VHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
+IVLDASA V+ +L +P + + G+ + AP +EV + + I+ E
Sbjct 1 MIVLDASALVDFLLLSPGWEQIRGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES 60
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ 117
+ L + R P+ T A+ +R + ++D YVALA L PL+T D +LA+
Sbjct 61 ASCLTQAGRLAIERVPMLDLTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLAR 118
>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 69/128 (54%), Gaps = 3/128 (2%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
++V+DAS V+ +L GAA AR L + AP D E++ +R+ V+ + + + L
Sbjct 1 MVVVDASVLVDALLLD--GAARAR-LAEANLQAPELIDAELLSVLRRLVLAERLGEQHAL 57
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
+ L +RR + RA++LR+ + D YVALAE LG L+T D R A++ G
Sbjct 58 QALATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARAPG 117
Query 121 HNAEIELV 128
+E++
Sbjct 118 LRCPVEVL 125
>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (33%), Positives = 67/129 (52%), Gaps = 3/129 (2%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
++V+DAS V+ +L A RL + AP D E++ +R+ V+ +++ L
Sbjct 1 MVVVDASVLVDALLIQ---GAARDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHAL 57
Query 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
+ L +RR + RA++LRS T D YVALAE LG L+T D R A++ G
Sbjct 58 QALATAQRLGLRRHVSRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARAPG 117
Query 121 HNAEIELVA 129
+E++A
Sbjct 118 LRCHVEVMA 126
>gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Frankia alni ACN14a]
gi|111151738|emb|CAJ63458.1| hypothetical protein; putative PIN domain [Frankia alni ACN14a]
Length=109
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/107 (36%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 24 RRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQR 82
RRL G E++ AP D E+I A+ +++ E V ++ LP+ R +R
Sbjct 3 RRLTGVESLLAPGLLDYEMISALFGMRRGGKLTEREMGKAVADYQLLPLVRHETLVLWRR 62
Query 83 AYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA 129
+L T + D YVALAE LG+PLIT D R+A+ IE+ A
Sbjct 63 VRELHHTLSAYDAQYVALAETLGLPLITSDARIARGGVATCTIEVYA 109
>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 0/101 (0%)
Query 28 GETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLR 87
E +H P D E+ +R+ R + +G + + L V R+P+ +R +++R
Sbjct 25 AERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWALQTWRRLAVTRYPVVGLFERIWEIR 84
Query 88 STHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
+ + D +YVALAE L L+T D RL+ + I +V
Sbjct 85 ANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=127
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 0/101 (0%)
Query 28 GETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLR 87
E +H P D E+ +R+ R + +G + + L V R+P+ +R +++R
Sbjct 25 AERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFERIWEIR 84
Query 88 STHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV 128
+ + D +YVALAE L L+T D RL+ + I +V
Sbjct 85 ANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (33%), Positives = 49/93 (53%), Gaps = 0/93 (0%)
Query 33 APAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTV 92
AP H +EV+ ++R + + ++ E + L +R+ + P R ++L+ T
Sbjct 35 APEHVVIEVMQSLRGLYLAKQLTAEEVAELTRRLPGLAIRKVEVAPLLGRIWELKDNLTP 94
Query 93 ADGAYVALAEGLGVPLITCDGRLAQSHGHNAEI 125
D AYVA+AE G PL+T D RL ++ G EI
Sbjct 95 DDAAYVAVAELHGAPLVTADLRLMRASGPRCEI 127
>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis
BCW-1]
Length=139
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/134 (34%), Positives = 65/134 (49%), Gaps = 9/134 (6%)
Query 1 VIVLDASAAVELMLTT-PAGAAVARRLRGET-VHAPAHFDVEVIGAI------RQAVVRQ 52
+IV+D SA + + P G V R+ E + AP D E++ A+ R+ +
Sbjct 1 MIVVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPK 60
Query 53 LISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCD 112
L S+ + V + L + R +R L S +V D YVALAEGLG+PLIT D
Sbjct 61 L-SEKQLRKAVATYRDLAIDRHETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSD 119
Query 113 GRLAQSHGHNAEIE 126
R+ +S EIE
Sbjct 120 ARIDRSGVARCEIE 133
>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 66/131 (51%), Gaps = 2/131 (1%)
Query 1 VIVLDASAAVELMLTT-PAGAAVARRLRGET-VHAPAHFDVEVIGAIRQAVVRQLISDHE 58
VIV+DAS + ++ P G A L G+ AP+H +EV+ IR V+ +
Sbjct 6 VIVVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLAR 65
Query 59 GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
+ SL + + R +QLR T D AY+A AE L PL+T DGRLA++
Sbjct 66 AQEAIDTLPSLVIDEVGVATLLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKA 125
Query 119 HGHNAEIELVA 129
+G EI L+A
Sbjct 126 NGVRCEIRLLA 136
>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/94 (33%), Positives = 48/94 (52%), Gaps = 0/94 (0%)
Query 34 PAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVA 93
P +EV A+R+ R ++ + + ++LP++ L+ R ++LR T
Sbjct 30 PDLLYLEVASAVRRLEQRGELTARRAAAAMEDLMALPLQVARLRTLLPRCWELRHNLTPY 89
Query 94 DGAYVALAEGLGVPLITCDGRLAQSHGHNAEIEL 127
D AYV LAE PL+T D RLA + G +IEL
Sbjct 90 DAAYVTLAEFSESPLVTADRRLAAAAGPRCKIEL 123
>gi|339444248|ref|YP_004710252.1| hypothetical protein EGYY_06500 [Eggerthella sp. YY7918]
gi|338904000|dbj|BAK43851.1| hypothetical protein EGYY_06500 [Eggerthella sp. YY7918]
Length=136
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/118 (35%), Positives = 57/118 (49%), Gaps = 3/118 (2%)
Query 1 VIVLDASAAVELMLTTPAGAAV-ARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
+IVLDA+AA+ +M T G A+ A L GE+V AP E+ A+ + V R +S E
Sbjct 1 MIVLDANAAIAMMRKTEEGEALLALMLEGESVIAPTLLHFELANALAKYVRRGELSSDEL 60
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQ--LRSTHTVADGAYVALAEGLGVPLITCDGRL 115
V + + +P K T A +R H V D Y+ LA G L T + RL
Sbjct 61 PVALQTSVQFVDTFYPGKELTLEATSEAVRLNHPVYDLFYLVLARRTGSTLFTLNKRL 118
>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (32%), Positives = 57/121 (48%), Gaps = 1/121 (0%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRL-RGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
+IVLD SA VE ++ T A V R L E + AP D+E +R + + E
Sbjct 1 MIVLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEA 60
Query 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
+ + +RR+ P R ++LR D AY+ALAE L L+T + +L +
Sbjct 61 SRALELLGRMNLRRYGHAPLLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDRVP 120
Query 120 G 120
G
Sbjct 121 G 121
>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (31%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query 1 VIVLDASAAVELMLTTPAGAAVARRLRGETVH--APAHFDVEVIGAIRQAVVRQLISDHE 58
+IV+DAS ++ AR G AP H+ VEV + + + IS+
Sbjct 1 MIVVDASVLANALVYADERGQRARVALGHDTEWAAPEHWMVEVFSVMHGLTLGKKISEER 60
Query 59 GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
+ L V + R +QLRS + D AYVALAE + L+T D RLA++
Sbjct 61 ARSAIARLPHLGVDHVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLARA 120
>gi|327310250|ref|YP_004337147.1| PilT protein domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326946729|gb|AEA11835.1| PilT protein domain protein [Thermoproteus uzoniensis 768-20]
Length=138
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/120 (32%), Positives = 57/120 (48%), Gaps = 7/120 (5%)
Query 2 IVLDASAAVELMLTTPAGAAVARRLRGETVH------APAHFDVEVIGAIRQAVVRQLIS 55
+V+DAS V+ L P ARRLR + + AP +EV A+R+ V+R +I
Sbjct 3 LVVDASVVVKWALPEPHHQE-ARRLRDDHLAGRVRAAAPPCLWLEVASALRKYVIRGIIG 61
Query 56 DHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL 115
+ + + + ++P LR TV D AY++LAE LGV T D +L
Sbjct 62 RDKAVEALRLLHQTDIEIIDVEPARVLETALRLGVTVYDAAYISLAESLGVDFYTADEKL 121
Lambda K H
0.323 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128283502052
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40