BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1720c

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608858|ref|NP_216236.1|  hypothetical protein Rv1720c [Mycob...   256    7e-67
gi|326903335|gb|EGE50268.1|  toxin [Mycobacterium tuberculosis W-...   253    5e-66
gi|340626727|ref|YP_004745179.1|  hypothetical protein MCAN_17311...   249    1e-64
gi|240170953|ref|ZP_04749612.1|  hypothetical protein MkanA1_1670...   214    4e-54
gi|217979588|ref|YP_002363735.1|  PilT protein domain-containing ...  97.1    8e-19
gi|297625029|ref|YP_003706463.1|  PilT domain-containing protein ...  84.0    6e-15
gi|288917657|ref|ZP_06412020.1|  PilT protein domain protein [Fra...  81.3    5e-14
gi|312195768|ref|YP_004015829.1|  PilT protein domain protein [Fr...  80.9    6e-14
gi|240168730|ref|ZP_04747389.1|  PilT domain-containing protein [...  77.4    7e-13
gi|336178825|ref|YP_004584200.1|  PilT protein domain-containing ...  77.4    7e-13
gi|218295256|ref|ZP_03496092.1|  PilT protein domain protein [The...  76.6    1e-12
gi|271964589|ref|YP_003338785.1|  PilT protein domain-containing ...  76.3    1e-12
gi|333990432|ref|YP_004523046.1|  hypothetical protein JDM601_179...  75.9    2e-12
gi|50843515|ref|YP_056742.1|  hypothetical protein PPA2073 [Propi...  73.2    1e-11
gi|313832495|gb|EFS70209.1|  toxin-antitoxin system, toxin compon...  72.8    2e-11
gi|284992100|ref|YP_003410654.1|  PilT protein domain-containing ...  71.6    4e-11
gi|289426009|ref|ZP_06427756.1|  toxin-antitoxin system, toxin co...  71.6    4e-11
gi|282854837|ref|ZP_06264171.1|  toxin-antitoxin system, toxin co...  71.2    4e-11
gi|314967266|gb|EFT11365.1|  toxin-antitoxin system, toxin compon...  70.9    6e-11
gi|313827108|gb|EFS64822.1|  toxin-antitoxin system, toxin compon...  70.5    8e-11
gi|152966078|ref|YP_001361862.1|  PilT protein-like [Kineococcus ...  67.4    6e-10
gi|336179019|ref|YP_004584394.1|  PilT protein domain-containing ...  65.1    4e-09
gi|313836325|gb|EFS74039.1|  toxin-antitoxin system, toxin compon...  64.3    5e-09
gi|269957933|ref|YP_003327722.1|  PilT protein domain-containing ...  63.2    1e-08
gi|256371478|ref|YP_003109302.1|  PilT protein domain-containing ...  62.4    2e-08
gi|284992067|ref|YP_003410621.1|  PilT domain-containing protein ...  62.4    2e-08
gi|15607207|ref|NP_214579.1|  hypothetical protein Rv0065 [Mycoba...  62.0    2e-08
gi|340625099|ref|YP_004743551.1|  hypothetical protein MCAN_00651...  62.0    3e-08
gi|289747834|ref|ZP_06507212.1|  conserved hypothetical protein [...  61.2    5e-08
gi|333025632|ref|ZP_08453696.1|  putative PilT protein-like prote...  58.5    3e-07
gi|134102274|ref|YP_001107935.1|  hypothetical protein SACE_5826 ...  57.4    6e-07
gi|167968378|ref|ZP_02550655.1|  hypothetical protein MtubH3_1022...  56.6    1e-06
gi|15607689|ref|NP_215063.1|  hypothetical protein Rv0549c [Mycob...  56.6    1e-06
gi|315446137|ref|YP_004079016.1|  nucleic acid-binding protein, c...  56.2    2e-06
gi|145225776|ref|YP_001136454.1|  PilT domain-containing protein ...  56.2    2e-06
gi|340625973|ref|YP_004744425.1|  hypothetical protein MCAN_09641...  54.3    5e-06
gi|84494959|ref|ZP_00994078.1|  hypothetical protein JNB_09174 [J...  53.9    7e-06
gi|87124166|ref|ZP_01080016.1|  hypothetical protein RS9917_11161...  53.1    1e-05
gi|87300649|ref|ZP_01083491.1|  hypothetical protein WH5701_04355...  53.1    1e-05
gi|111224206|ref|YP_715000.1|  hypothetical protein FRAAL4817 [Fr...  52.8    2e-05
gi|289753016|ref|ZP_06512394.1|  conserved hypothetical protein [...  52.4    2e-05
gi|15608100|ref|NP_215475.1|  hypothetical protein Rv0960 [Mycoba...  52.4    2e-05
gi|311896050|dbj|BAJ28458.1|  hypothetical protein KSE_26460 [Kit...  52.0    3e-05
gi|297161843|gb|ADI11555.1|  hypothetical protein SBI_08437 [Stre...  51.6    4e-05
gi|330465116|ref|YP_004402859.1|  toxin [Verrucosispora maris AB-...  51.2    4e-05
gi|336118169|ref|YP_004572938.1|  hypothetical protein MLP_25210 ...  51.2    5e-05
gi|339444248|ref|YP_004710252.1|  hypothetical protein EGYY_06500...  48.5    3e-04
gi|86740207|ref|YP_480607.1|  PilT protein-like protein [Frankia ...  48.1    4e-04
gi|336177502|ref|YP_004582877.1|  PilT protein domain-containing ...  46.2    0.001
gi|327310250|ref|YP_004337147.1|  PilT protein domain-containing ...  43.1    0.013


>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
 gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
 gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=129

 Score =  256 bits (654),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 128/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL
Sbjct  1    MIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
            VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG
Sbjct  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120

Query  121  HNAEIELVA  129
            HNAEIELVA
Sbjct  121  HNAEIELVA  129


>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129

 Score =  253 bits (647),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 127/129 (99%), Positives = 128/129 (99%), Gaps = 0/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +IVLDASAAVELMLTTPAGAAVARRLRGETV APAHFDVEVIGAIRQAVVRQLISDHEGL
Sbjct  1    MIVLDASAAVELMLTTPAGAAVARRLRGETVRAPAHFDVEVIGAIRQAVVRQLISDHEGL  60

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
            VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG
Sbjct  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120

Query  121  HNAEIELVA  129
            HNAEIELVA
Sbjct  121  HNAEIELVA  129


>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT 
140010059]
 gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129

 Score =  249 bits (636),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 125/129 (97%), Positives = 126/129 (98%), Gaps = 0/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +IVLDASAAVELML TPAGAAVARRLRGETVHAPAHFDVEVIGAI QAVVRQLISDHEGL
Sbjct  1    MIVLDASAAVELMLATPAGAAVARRLRGETVHAPAHFDVEVIGAIHQAVVRQLISDHEGL  60

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
            VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG
Sbjct  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120

Query  121  HNAEIELVA  129
            H AEIELVA
Sbjct  121  HTAEIELVA  129


>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC 
12478]
Length=129

 Score =  214 bits (544),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 106/129 (83%), Positives = 116/129 (90%), Gaps = 0/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +IVLDASAAVEL+L TP GAAVARRLR ETVHAPAH DVEVIGAIR+AVVR+LISDHEG+
Sbjct  1    MIVLDASAAVELVLATPPGAAVARRLRDETVHAPAHIDVEVIGAIRRAVVRRLISDHEGV  60

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
            V V +FLSL +RRWP+KPF QRAYQLR+TH VAD  YVALAEG GV LITCDGRLAQSHG
Sbjct  61   VAVADFLSLQIRRWPIKPFAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQSHG  120

Query  121  HNAEIELVA  129
            H+AEIELVA
Sbjct  121  HDAEIELVA  129


>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris 
BL2]
 gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130

 Score = 97.1 bits (240),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 58/130 (45%), Positives = 76/130 (59%), Gaps = 2/130 (1%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRL--RGETVHAPAHFDVEVIGAIRQAVVRQLISDHE  58
            +IV+DASA +E +L TP+   V  RL   G+T+HAP   DVEV   IR+  +   I    
Sbjct  1    MIVVDASALLEALLRTPSAKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRAR  60

Query  59   GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118
            G + + +   LP+RR+P      R + LR+  T  D AYVALAE L  PL+T D RLA +
Sbjct  61   GGLALADLADLPLRRYPHDFLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA  120

Query  119  HGHNAEIELV  128
             GH A IELV
Sbjct  121  AGHRARIELV  130


>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134

 Score = 84.0 bits (206),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 52/129 (41%), Positives = 72/129 (56%), Gaps = 2/129 (1%)

Query  1    VIVLDASAAVELMLT-TPAGAAVARR-LRGETVHAPAHFDVEVIGAIRQAVVRQLISDHE  58
            +IVLDASA V  +L   PA A +  R LR  T+H P  FD+EV+ A+R+   ++ IS   
Sbjct  1    MIVLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPAR  60

Query  59   GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118
                      L   R P  P  +R ++LR+  +  D  YVALAE L  PLIT D RL ++
Sbjct  61   AERAFARLRELRCERHPHVPLAERVWELRANLSAYDATYVALAEILEAPLITLDARLGRA  120

Query  119  HGHNAEIEL  127
             GH A++E+
Sbjct  121  PGHRAQLEV  129


>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 52/132 (40%), Positives = 72/132 (55%), Gaps = 4/132 (3%)

Query  1    VIVLDASAAVELML--TTPAGAAVARRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDH  57
            +IV+DAS  V+L+    +P   A   RL G +  +APAH DVEVI A+R    R      
Sbjct  3    LIVVDASVIVDLLAGDDSPRRKAARDRLTGGDVFYAPAHLDVEVISALRGLARRTSRLAE  62

Query  58   EGLVVVVNFLSLPVRRWPLK-PFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLA  116
                ++ + + LP+RR  L  P  QR ++LR T T  D  YVALAE +   L+TCD + A
Sbjct  63   HTPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKYA  122

Query  117  QSHGHNAEIELV  128
             + G    IEL+
Sbjct  123  ATAGPRCAIELI  134


>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
 gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 47/125 (38%), Positives = 68/125 (55%), Gaps = 1/125 (0%)

Query  2    IVLDASAAVELMLTT-PAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +VLDASAAV L+    PAG  VA+ + G  + AP     E    +R+ ++  ++   E  
Sbjct  9    VVLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEAT  68

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
            +   + L++PVRR        RA+ LR+  T  D AYVALAE L  PL+T D RL ++ G
Sbjct  69   LAHADLLAMPVRRLAYASLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRASG  128

Query  121  HNAEI  125
               E+
Sbjct  129  PRCEV  133


>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162

 Score = 77.4 bits (189),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 49/130 (38%), Positives = 71/130 (55%), Gaps = 1/130 (0%)

Query  1    VIVLDASA-AVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            VIV+DAS  AV L      G     RL  ET+ AP   D+EV+   R+ V  + +     
Sbjct  28   VIVVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAKRMPARRA  87

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119
               V +  +LP+RR   +P   R ++L+   T  D AYVALAE L + L+T D RL+++ 
Sbjct  88   ASAVADLTNLPLRRSSHQPLLHRVWELQHVLTAYDAAYVALAEALDIVLVTADARLSRAS  147

Query  120  GHNAEIELVA  129
            G + EIE+V+
Sbjct  148  GTHCEIEVVS  157


>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133

 Score = 77.4 bits (189),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 41/124 (34%), Positives = 67/124 (55%), Gaps = 1/124 (0%)

Query  3    VLDASAAVELMLTTPAGAAVARRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            V+D S  ++++        + +RL    T+HAP H DVEV   +R     + I+DH G  
Sbjct  6    VVDCSLVIDVLSVRNGDEVLRQRLSAPRTLHAPHHLDVEVASTVRGLAAGKKITDHRGEQ  65

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGH  121
            ++ ++  L + R P+ P+  R ++LR      D AY+ALAE LG  L+T D ++  + GH
Sbjct  66   MLADYARLRITRHPVWPYHPRLWELRHNLGAYDAAYIALAEALGCELLTGDTKIKNAAGH  125

Query  122  NAEI  125
             A +
Sbjct  126  RATV  129


>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 46/119 (39%), Positives = 65/119 (55%), Gaps = 0/119 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +VLDASAA E +L TP G  VA  + G+ + APA  D EV+  +R+A +   +S      
Sbjct  4    LVLDASAAAEYLLRTPLGRQVAALVEGKRLFAPALLDAEVLAVVRKATLSGRLSPTRAQE  63

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
             + +  S P+ R    P    A+ LR   T  D  YVALA+ L  P++T DG LA++ G
Sbjct  64   ALEDLFSWPLFRVDHGPLLLPAFALRDRLTAYDALYVALAQRLSAPILTADGPLARAPG  122


>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum 
DSM 43021]
 gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137

 Score = 76.3 bits (186),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 48/128 (38%), Positives = 67/128 (53%), Gaps = 5/128 (3%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVV----RQLISDH  57
            +V+DAS    L+        + +RL    VHAPA  DVE+   +R  VV       IS+ 
Sbjct  3    LVVDASIVFRLLANVKGDDLLRQRL-ARKVHAPALIDVEIASVVRGHVVTGKPEVRISEA  61

Query  58   EGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ  117
               +++  +  L + R P+ P   R  +LR+  T  DG YVALAE LGVP++T D + A 
Sbjct  62   RAQIMLERYAQLKIVRHPMLPLQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAKFAG  121

Query  118  SHGHNAEI  125
            S GH  EI
Sbjct  122  STGHRTEI  129


>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
 gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/126 (39%), Positives = 67/126 (54%), Gaps = 1/126 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +IV+DA+A V+ +        +   L  E +HAPA  D EV+ A+R       +S     
Sbjct  1    MIVVDAAALVDALTGVDGTDELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAH  60

Query  61   VVVVNFLSLPVRRWP-LKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119
              + +F +L +RRWP       RA+ LR   T  D AYVALAE L   ++T D RLA+S 
Sbjct  61   DALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARSG  120

Query  120  GHNAEI  125
            GH+ EI
Sbjct  121  GHSVEI  126


>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
 gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL030PA1]
 gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes 
6609]
Length=129

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 38/114 (34%), Positives = 63/114 (56%), Gaps = 0/114 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +V+DAS   E+++ +  G A  ++  GE   AP H   E+   +R   +  LI+D E + 
Sbjct  3    LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            ++ +F +  V  +P++P    A+++R   +  D  YV LA  LGV L+TCD RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL  116


>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL056PA1]
Length=129

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 38/114 (34%), Positives = 63/114 (56%), Gaps = 0/114 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +V+DAS   E+++ +  G A  ++  GE   AP H   E+   +R   +  LI+D E + 
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            ++ +F +L V  +P++P    A+++R   +  D  YV LA  LG  L+TCD RL
Sbjct  63   ILSDFRALKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus 
DSM 43160]
 gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 49/129 (38%), Positives = 65/129 (51%), Gaps = 1/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARR-LRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            +IV+DAS  V  +L    G   AR  + G+  HAP   DVEV+ A+R+  +   + D   
Sbjct  1    MIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAA  60

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119
               V     LPV R        RA QLR + T  DG YVALAE LG  L+T D RL+ + 
Sbjct  61   RDAVTAMRDLPVIRHGHDLLLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAP  120

Query  120  GHNAEIELV  128
            G    + +V
Sbjct  121  GLRCPVSVV  129


>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes SK187]
 gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J165]
 gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
 55 more sequence titles
 Length=129

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 62/114 (55%), Gaps = 0/114 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +V+DAS   E+++ +  G A  ++  GE   AP H   E+   +R   +  LI+D E + 
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            ++ +F +  V  +P++P    A+++R   +  D  YV LA  LG  L+TCD RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J139]
 gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
 gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
 7 more sequence titles
 Length=129

 Score = 71.2 bits (173),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 62/114 (55%), Gaps = 0/114 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +V+DAS   E+++ +  G A  ++  GE   AP H   E+   +R   +  LI+D E + 
Sbjct  3    LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            ++ +F +  V  +P++P    A+++R   +  D  YV LA  LG  L+TCD RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL082PA2]
 gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA3]
 gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA4]
 gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL060PA1]
 gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL103PA1]
Length=129

 Score = 70.9 bits (172),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 62/114 (55%), Gaps = 0/114 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +V+DAS   E+++ +  G A  ++  GE   AP H   E+   +R   +  LI+D E + 
Sbjct  3    LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLLAEIAHVVRNLSLGHLITDAEAMR  62

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            ++ +F +  V  +P++P    A+++R   +  D  YV LA  LG  L+TCD RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL063PA1]
Length=129

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 61/114 (54%), Gaps = 0/114 (0%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61
            +V+DAS   E+++ +  G A  ++  GE   AP H   E+   +R      LI+D E + 
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSSGHLITDAEAMR  62

Query  62   VVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            ++ +F +  V  +P++P    A+++R   +  D  YV LA  LG  L+TCD RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
 gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100

 Score = 67.4 bits (163),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 35/96 (37%), Positives = 55/96 (58%), Gaps = 0/96 (0%)

Query  33   APAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTV  92
            AP   D+EV   +R+A     + D    +   + + LP+RR   +P  +R ++LR T T 
Sbjct  4    APEVIDLEVASVLRRAAASGRLPDRRADLAWNDLIDLPLRRAGHRPLLRRCWELRHTVTS  63

Query  93   ADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
             D AYVALAE L + L+T D RL+++ G   E+E++
Sbjct  64   YDAAYVALAEALDIVLVTADARLSRAPGITCEVEVL  99


>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135

 Score = 65.1 bits (157),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 46/129 (36%), Positives = 67/129 (52%), Gaps = 2/129 (1%)

Query  3    VLDASAAVELMLTTPAGA-AVARRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            V+D SA V  +    AG  AV RRL G E++ AP   D E++ A+   +    I+  E  
Sbjct  7    VIDCSALVRTLTDQGAGGVAVRRRLAGLESLAAPGLLDYEIVSALFGMLRGNKITKRETT  66

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
              V ++  LP+ R       +R ++L    +  D  YVALAE LG+PLIT D R+A+S  
Sbjct  67   KAVADYQILPLVRHETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARSGT  126

Query  121  HNAEIELVA  129
                +E+ A
Sbjct  127  AACAVEVFA  135


>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA2]
 gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL044PA1]
 gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA3]
 gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
humerusii P08]
Length=197

 Score = 64.3 bits (155),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 35/115 (31%), Positives = 61/115 (54%), Gaps = 0/115 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
             +V++ S   E+++ +  G A  ++  GE   AP H   E+   +R   + QLI+D E +
Sbjct  2    TLVVEVSVLAEMLVGSTVGCAAWQQWGGEEFIAPQHLSAEIAHVVRNLSLGQLITDAEAM  61

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
             ++ +F +  V  +P++P    A+++R   +  D  YV LA  LG  L+T D RL
Sbjct  62   QILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTRDHRL  116


>gi|269957933|ref|YP_003327722.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306614|gb|ACZ32164.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM 
15894]
Length=138

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 40/118 (34%), Positives = 62/118 (53%), Gaps = 2/118 (1%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGE--TVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            +V+DASA  E ++++ AG A+   LR     +H P    VE +  +R  V+   ++    
Sbjct  5    LVVDASALAEYLVSSAAGQAIGEELRAHDGALHVPHLAVVETVSVLRGLVLGGFLTAERA  64

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ  117
               + +   LP  RWP +P   R ++LRS  +  D  YVALAE L   ++T D RLA+
Sbjct  65   AAALADLADLPAERWPSEPLLPRIWELRSNLSAYDATYVALAEALDADVVTRDARLAR  122


>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans 
DSM 10331]
 gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=146

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/113 (36%), Positives = 57/113 (51%), Gaps = 0/113 (0%)

Query  3    VLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVV  62
            V+DASA V+L+L    G AV RR+ G  +HAPAH D EV+ A+ +      +      V 
Sbjct  23   VVDASALVDLLLDNELGRAVRRRIAGHALHAPAHVDAEVLSALGRLHRADSLDAGTVEVK  82

Query  63   VVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
            +    + P+ R P+       +  R    + D  Y+ LA   GVPL+T D RL
Sbjct  83   LRELAAAPIERHPVHDLLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRL  135


>gi|284992067|ref|YP_003410621.1| PilT domain-containing protein [Geodermatophilus obscurus DSM 
43160]
 gi|284065312|gb|ADB76250.1| PilT domain-containing protein [Geodermatophilus obscurus DSM 
43160]
Length=131

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 34/95 (36%), Positives = 51/95 (54%), Gaps = 0/95 (0%)

Query  26   LRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQ  85
            LRGE + AP H  ++    +R+AV+   +      +  ++   + VR +   P   R ++
Sbjct  28   LRGEDLTAPTHMQIQASNVLRRAVLAGRLGVDAASLAHLDLTRMSVRSFGFDPLATRIWE  87

Query  86   LRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
            L    T  D AYVALAE L VPL+T D RLA++ G
Sbjct  88   LHPAVTAYDAAYVALAEELAVPLVTLDRRLARASG  122


>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
 gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
 gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=133

 Score = 62.0 bits (149),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 45/113 (40%), Positives = 60/113 (54%), Gaps = 2/113 (1%)

Query  18   AGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPL  76
            A A V R L  E++ +AP   D EV  A+R+AV+   IS+ +    +     L   R+P 
Sbjct  20   ASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPH  79

Query  77   KP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
             P   +  +QLR   T  D  YVALA  L VPL+T D RLA + G   EI+LV
Sbjct  80   SPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132


>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT 
140010059]
 gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 45/113 (40%), Positives = 60/113 (54%), Gaps = 2/113 (1%)

Query  18   AGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPL  76
            A A V R L  E++ +AP   D EV  A+R+AV+   IS+ +    +     L   R+P 
Sbjct  20   ASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPH  79

Query  77   KP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
             P   +  +QLR   T  D  YVALA  L VPL+T D RLA + G   EI+LV
Sbjct  80   SPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132


>gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688362|gb|EFD55850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=133

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 45/113 (40%), Positives = 59/113 (53%), Gaps = 2/113 (1%)

Query  18   AGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPL  76
            A A V R L  E + +AP   D EV  A+R+AV+   IS+ +    +     L   R+P 
Sbjct  20   ASAIVLRGLLKEPISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPH  79

Query  77   KP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
             P   +  +QLR   T  D  YVALA  L VPL+T D RLA + G   EI+LV
Sbjct  80   SPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132


>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
 gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/99 (35%), Positives = 50/99 (51%), Gaps = 0/99 (0%)

Query  31   VHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTH  90
            V+APA  D+E     R  +    I++H     V    S P+RR   +    R ++LR  +
Sbjct  4    VYAPALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFRVWELRHNY  63

Query  91   TVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA  129
            +  D +YVALAE LG  L+T D RL +  G    +EL+ 
Sbjct  64   SPYDASYVALAEQLGATLLTGDARLQRGTGKRCPVELIG  102


>gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291003763|ref|ZP_06561736.1| hypothetical protein SeryN2_04507 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133914897|emb|CAM05010.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL 
2338]
Length=129

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 39/117 (34%), Positives = 56/117 (48%), Gaps = 2/117 (1%)

Query  3    VLDASAAVELMLTTPAGAAVARRLRGE--TVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            ++DASA ++L+L       +   +       H P   D EVI  +R+      ++  E  
Sbjct  1    MVDASAVLDLLLQLRRAHRIGELISSPFAQSHVPDTIDREVINVLRKRERSGSLTSAEAE  60

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ  117
             V   FL LP      +PF  R + LRS  +V D  YV+LAE L   LIT D +LA+
Sbjct  61   TVFGEFLLLPFEVHDARPFAPRVWGLRSVCSVGDAYYVSLAESLDATLITSDEKLAR  117


>gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_10224 [Mycobacterium tuberculosis 
H37Ra]
 gi|289744262|ref|ZP_06503640.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308231586|ref|ZP_07412990.2| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308395796|ref|ZP_07669348.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|289684790|gb|EFD52278.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308216759|gb|EFO76158.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308367245|gb|EFP56096.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=126

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/118 (36%), Positives = 62/118 (53%), Gaps = 1/118 (0%)

Query  2    IVLDASAAVELML-TTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +V+DASA V+L+  T+   +AV  RL    +HAPAHFD EV+ A+ +      ++     
Sbjct  1    MVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  60

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118
              +     +PV R  L      A+  R T  + D  YV LAE  G+ L+T D RLA++
Sbjct  61   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  118


>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
 gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
 gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
 61 more sequence titles
 Length=137

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/118 (36%), Positives = 62/118 (53%), Gaps = 1/118 (0%)

Query  2    IVLDASAAVELML-TTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            +V+DASA V+L+  T+   +AV  RL    +HAPAHFD EV+ A+ +      ++     
Sbjct  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118
              +     +PV R  L      A+  R T  + D  YV LAE  G+ L+T D RLA++
Sbjct  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129


>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
 gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
Length=133

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 48/129 (38%), Positives = 70/129 (55%), Gaps = 1/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVAR-RLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            +IV+DAS     +    A   +AR RL GE + AP   D+EV    R+ V  +L++    
Sbjct  1    MIVVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA  60

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119
               V +   LP+RR   +P  +R + LR T T  D AY ALAE L V L+T D RLA++ 
Sbjct  61   DAAVSDLADLPLRRCSHRPLLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARAP  120

Query  120  GHNAEIELV  128
            G   ++E++
Sbjct  121  GLACDVEVI  129


>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 49/129 (38%), Positives = 69/129 (54%), Gaps = 1/129 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVAR-RLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            VIV+DAS     +    A    AR RL GE + AP   D+EV    R+ V  +L++    
Sbjct  23   VIVVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA  82

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119
               V +   LP+RR   +P  +R + LR T T  D AY ALAE L V L+T D RLA++ 
Sbjct  83   DAGVSDLEDLPLRRCSHRPLLERIWALRRTVTPYDAAYAALAEALEVVLVTADARLARAP  142

Query  120  GHNAEIELV  128
            G   ++E++
Sbjct  143  GLACDVEVI  151


>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT 
140010059]
 gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score = 54.3 bits (129),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 30/101 (30%), Positives = 51/101 (51%), Gaps = 0/101 (0%)

Query  28   GETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLR  87
             E +H P   D E+   +R+ V R  +   +G   +  +  L V R+P+    +R +++R
Sbjct  25   AERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRALQTWRRLAVTRYPVVGLFERIWEIR  84

Query  88   STHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
            +  +  D +YVALAE L   L+T D RL+ +      I +V
Sbjct  85   ANLSAYDASYVALAEALNCELVTADLRLSNTGQARCPITVV  125


>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
 gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131

 Score = 53.9 bits (128),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 36/118 (31%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGET-VHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            +IVLDASA V+ +L +P    +   + G+  + AP    +EV   + +      I+  E 
Sbjct  1    MIVLDASALVDFLLLSPGWEQIRGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES  60

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQ  117
               +     L + R P+   T  A+ +R +  ++D  YVALA  L  PL+T D +LA+
Sbjct  61   ASCLTQAGRLAIERVPMLDLTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLAR  118


>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
 gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 69/128 (54%), Gaps = 3/128 (2%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            ++V+DAS  V+ +L    GAA AR L    + AP   D E++  +R+ V+ + + +   L
Sbjct  1    MVVVDASVLVDALLLD--GAARAR-LAEANLQAPELIDAELLSVLRRLVLAERLGEQHAL  57

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
              +     L +RR   +    RA++LR+  +  D  YVALAE LG  L+T D R A++ G
Sbjct  58   QALATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARAPG  117

Query  121  HNAEIELV  128
                +E++
Sbjct  118  LRCPVEVL  125


>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
 gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 42/129 (33%), Positives = 67/129 (52%), Gaps = 3/129 (2%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60
            ++V+DAS  V+ +L      A   RL    + AP   D E++  +R+ V+   +++   L
Sbjct  1    MVVVDASVLVDALLIQ---GAARDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHAL  57

Query  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120
              +     L +RR   +    RA++LRS  T  D  YVALAE LG  L+T D R A++ G
Sbjct  58   QALATAQRLGLRRHVSRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARAPG  117

Query  121  HNAEIELVA  129
                +E++A
Sbjct  118  LRCHVEVMA  126


>gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Frankia alni ACN14a]
 gi|111151738|emb|CAJ63458.1| hypothetical protein; putative PIN domain [Frankia alni ACN14a]
Length=109

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 38/107 (36%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  24   RRLRG-ETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQR  82
            RRL G E++ AP   D E+I A+        +++ E    V ++  LP+ R       +R
Sbjct  3    RRLTGVESLLAPGLLDYEMISALFGMRRGGKLTEREMGKAVADYQLLPLVRHETLVLWRR  62

Query  83   AYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA  129
              +L  T +  D  YVALAE LG+PLIT D R+A+       IE+ A
Sbjct  63   VRELHHTLSAYDAQYVALAETLGLPLITSDARIARGGVATCTIEVYA  109


>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 0/101 (0%)

Query  28   GETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLR  87
             E +H P   D E+   +R+   R  +   +G   +  +  L V R+P+    +R +++R
Sbjct  25   AERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWALQTWRRLAVTRYPVVGLFERIWEIR  84

Query  88   STHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
            +  +  D +YVALAE L   L+T D RL+ +      I +V
Sbjct  85   ANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125


>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
 gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
 gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=127

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 0/101 (0%)

Query  28   GETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLR  87
             E +H P   D E+   +R+   R  +   +G   +  +  L V R+P+    +R +++R
Sbjct  25   AERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFERIWEIR  84

Query  88   STHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELV  128
            +  +  D +YVALAE L   L+T D RL+ +      I +V
Sbjct  85   ANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125


>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 30/93 (33%), Positives = 49/93 (53%), Gaps = 0/93 (0%)

Query  33   APAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTV  92
            AP H  +EV+ ++R   + + ++  E   +      L +R+  + P   R ++L+   T 
Sbjct  35   APEHVVIEVMQSLRGLYLAKQLTAEEVAELTRRLPGLAIRKVEVAPLLGRIWELKDNLTP  94

Query  93   ADGAYVALAEGLGVPLITCDGRLAQSHGHNAEI  125
             D AYVA+AE  G PL+T D RL ++ G   EI
Sbjct  95   DDAAYVAVAELHGAPLVTADLRLMRASGPRCEI  127


>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis 
BCW-1]
Length=139

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 45/134 (34%), Positives = 65/134 (49%), Gaps = 9/134 (6%)

Query  1    VIVLDASAAVELMLTT-PAGAAVARRLRGET-VHAPAHFDVEVIGAI------RQAVVRQ  52
            +IV+D SA +  +    P G  V  R+  E  + AP   D E++ A+      R+    +
Sbjct  1    MIVVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPK  60

Query  53   LISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCD  112
            L S+ +    V  +  L + R       +R   L S  +V D  YVALAEGLG+PLIT D
Sbjct  61   L-SEKQLRKAVATYRDLAIDRHETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSD  119

Query  113  GRLAQSHGHNAEIE  126
             R+ +S     EIE
Sbjct  120  ARIDRSGVARCEIE  133


>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
 gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138

 Score = 51.2 bits (121),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 66/131 (51%), Gaps = 2/131 (1%)

Query  1    VIVLDASAAVELMLTT-PAGAAVARRLRGET-VHAPAHFDVEVIGAIRQAVVRQLISDHE  58
            VIV+DAS   + ++   P G A    L G+    AP+H  +EV+  IR  V+   +    
Sbjct  6    VIVVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLAR  65

Query  59   GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118
                +    SL +    +     R +QLR   T  D AY+A AE L  PL+T DGRLA++
Sbjct  66   AQEAIDTLPSLVIDEVGVATLLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKA  125

Query  119  HGHNAEIELVA  129
            +G   EI L+A
Sbjct  126  NGVRCEIRLLA  136


>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
 gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 31/94 (33%), Positives = 48/94 (52%), Gaps = 0/94 (0%)

Query  34   PAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVA  93
            P    +EV  A+R+   R  ++       + + ++LP++   L+    R ++LR   T  
Sbjct  30   PDLLYLEVASAVRRLEQRGELTARRAAAAMEDLMALPLQVARLRTLLPRCWELRHNLTPY  89

Query  94   DGAYVALAEGLGVPLITCDGRLAQSHGHNAEIEL  127
            D AYV LAE    PL+T D RLA + G   +IEL
Sbjct  90   DAAYVTLAEFSESPLVTADRRLAAAAGPRCKIEL  123


>gi|339444248|ref|YP_004710252.1| hypothetical protein EGYY_06500 [Eggerthella sp. YY7918]
 gi|338904000|dbj|BAK43851.1| hypothetical protein EGYY_06500 [Eggerthella sp. YY7918]
Length=136

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 41/118 (35%), Positives = 57/118 (49%), Gaps = 3/118 (2%)

Query  1    VIVLDASAAVELMLTTPAGAAV-ARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            +IVLDA+AA+ +M  T  G A+ A  L GE+V AP     E+  A+ + V R  +S  E 
Sbjct  1    MIVLDANAAIAMMRKTEEGEALLALMLEGESVIAPTLLHFELANALAKYVRRGELSSDEL  60

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQ--LRSTHTVADGAYVALAEGLGVPLITCDGRL  115
             V +   +      +P K  T  A    +R  H V D  Y+ LA   G  L T + RL
Sbjct  61   PVALQTSVQFVDTFYPGKELTLEATSEAVRLNHPVYDLFYLVLARRTGSTLFTLNKRL  118


>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 38/121 (32%), Positives = 57/121 (48%), Gaps = 1/121 (0%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRL-RGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59
            +IVLD SA VE ++ T   A V R L   E + AP   D+E    +R       + + E 
Sbjct  1    MIVLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEA  60

Query  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119
               +     + +RR+   P   R ++LR      D AY+ALAE L   L+T + +L +  
Sbjct  61   SRALELLGRMNLRRYGHAPLLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDRVP  120

Query  120  G  120
            G
Sbjct  121  G  121


>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 37/120 (31%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query  1    VIVLDASAAVELMLTTPAGAAVARRLRGETVH--APAHFDVEVIGAIRQAVVRQLISDHE  58
            +IV+DAS     ++        AR   G      AP H+ VEV   +    + + IS+  
Sbjct  1    MIVVDASVLANALVYADERGQRARVALGHDTEWAAPEHWMVEVFSVMHGLTLGKKISEER  60

Query  59   GLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118
                +     L V    +     R +QLRS  +  D AYVALAE   + L+T D RLA++
Sbjct  61   ARSAIARLPHLGVDHVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLARA  120


>gi|327310250|ref|YP_004337147.1| PilT protein domain-containing protein [Thermoproteus uzoniensis 
768-20]
 gi|326946729|gb|AEA11835.1| PilT protein domain protein [Thermoproteus uzoniensis 768-20]
Length=138

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 38/120 (32%), Positives = 57/120 (48%), Gaps = 7/120 (5%)

Query  2    IVLDASAAVELMLTTPAGAAVARRLRGETVH------APAHFDVEVIGAIRQAVVRQLIS  55
            +V+DAS  V+  L  P     ARRLR + +       AP    +EV  A+R+ V+R +I 
Sbjct  3    LVVDASVVVKWALPEPHHQE-ARRLRDDHLAGRVRAAAPPCLWLEVASALRKYVIRGIIG  61

Query  56   DHEGLVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRL  115
              + +  +       +    ++P       LR   TV D AY++LAE LGV   T D +L
Sbjct  62   RDKAVEALRLLHQTDIEIIDVEPARVLETALRLGVTVYDAAYISLAESLGVDFYTADEKL  121



Lambda     K      H
   0.323    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128283502052


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40