BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1725c Length=236 Score E Sequences producing significant alignments: (Bits) Value gi|15608863|ref|NP_216241.1| hypothetical protein Rv1725c [Mycob... 471 3e-131 gi|289447340|ref|ZP_06437084.1| conserved hypothetical protein [... 468 2e-130 gi|340626730|ref|YP_004745182.1| hypothetical protein MCAN_17361... 467 7e-130 gi|15841187|ref|NP_336224.1| hypothetical protein MT1766 [Mycoba... 375 2e-102 gi|284030103|ref|YP_003380034.1| HxlR family transcriptional reg... 213 2e-53 gi|333917951|ref|YP_004491532.1| hypothetical protein AS9A_0273 ... 169 3e-40 gi|331694552|ref|YP_004330791.1| HxlR family transcriptional reg... 166 2e-39 gi|317125768|ref|YP_004099880.1| HxlR family transcriptional reg... 161 7e-38 gi|116254239|ref|YP_770077.1| hypothetical protein RL4512 [Rhizo... 161 9e-38 gi|54024467|ref|YP_118709.1| putative transcriptional regulator ... 156 2e-36 gi|220906603|ref|YP_002481914.1| HxlR family transcriptional reg... 152 3e-35 gi|333984144|ref|YP_004513354.1| HxlR family transcriptional reg... 150 1e-34 gi|110634441|ref|YP_674649.1| HxlR family transcriptional regula... 148 5e-34 gi|302865925|ref|YP_003834562.1| helix-turn-helix HxlR-like prot... 147 1e-33 gi|315502481|ref|YP_004081368.1| HxlR family transcriptional reg... 147 2e-33 gi|336288061|gb|AEI30336.1| transcriptional regulator HxlR famil... 146 3e-33 gi|229489532|ref|ZP_04383395.1| conserved hypothetical protein [... 145 3e-33 gi|226305438|ref|YP_002765396.1| HxlR family transcriptional reg... 145 5e-33 gi|260429848|ref|ZP_05783824.1| transcriptional regulator [Citre... 145 6e-33 gi|158339933|ref|YP_001521103.1| transcriptional regulator [Acar... 143 2e-32 gi|170728373|ref|YP_001762399.1| HxlR family transcriptional reg... 142 3e-32 gi|319764355|ref|YP_004128292.1| helix-turn-helix hxlr type [Ali... 139 3e-31 gi|197106568|ref|YP_002131945.1| predicted transcriptional regul... 139 4e-31 gi|319782629|ref|YP_004142105.1| HxlR type helix-turn-helix- dom... 137 2e-30 gi|288921522|ref|ZP_06415797.1| transcriptional regulator, HxlR ... 137 2e-30 gi|13471772|ref|NP_103339.1| hypothetical protein mlr1855 [Mesor... 135 6e-30 gi|119714213|ref|YP_919355.1| helix-turn-helix, HxlR type [Nocar... 134 8e-30 gi|312195445|ref|YP_004015506.1| HxlR family transcriptional reg... 134 9e-30 gi|343926167|ref|ZP_08765676.1| putative HxlR family transcripti... 134 9e-30 gi|254466620|ref|ZP_05080031.1| hypothetical protein RBY4I_3230 ... 134 9e-30 gi|337267804|ref|YP_004611859.1| HxlR family transcriptional reg... 134 1e-29 gi|269837674|ref|YP_003319902.1| transcriptional regulator, HxlR... 133 2e-29 gi|91789231|ref|YP_550183.1| HxlR family transcriptional regulat... 132 4e-29 gi|299132626|ref|ZP_07025821.1| transcriptional regulator, HxlR ... 131 8e-29 gi|118618725|ref|YP_907057.1| transcriptional regulator [Mycobac... 131 9e-29 gi|183981640|ref|YP_001849931.1| transcriptional regulator [Myco... 131 1e-28 gi|254440608|ref|ZP_05054102.1| putative transcriptional regulat... 128 6e-28 gi|254489113|ref|ZP_05102317.1| transcriptional regulator, HxlR ... 124 2e-26 gi|118593791|ref|ZP_01551158.1| hypothetical protein SIAM614_287... 123 2e-26 gi|108798771|ref|YP_638968.1| HxlR family transcriptional regula... 122 6e-26 gi|83952515|ref|ZP_00961246.1| hypothetical protein ISM_10196 [R... 120 1e-25 gi|300787591|ref|YP_003767882.1| HxlR family transcriptional reg... 120 1e-25 gi|331697580|ref|YP_004333819.1| HxlR family transcriptional reg... 118 9e-25 gi|109898125|ref|YP_661380.1| HxlR family transcriptional regula... 116 3e-24 gi|326333108|ref|ZP_08199357.1| transcriptional regulator, HxlR ... 116 3e-24 gi|271961920|ref|YP_003336116.1| transcriptional regulator [Stre... 97.8 1e-18 gi|332672240|ref|YP_004455248.1| HxlR family transcriptional reg... 96.7 2e-18 gi|120402047|ref|YP_951876.1| HxlR family transcriptional regula... 92.4 5e-17 gi|333917861|ref|YP_004491442.1| MarR family transcriptional reg... 91.7 8e-17 gi|262200639|ref|YP_003271847.1| HxlR family transcriptional reg... 91.7 8e-17 >gi|15608863|ref|NP_216241.1| hypothetical protein Rv1725c [Mycobacterium tuberculosis H37Rv] gi|31792913|ref|NP_855406.1| hypothetical protein Mb1754c [Mycobacterium bovis AF2122/97] gi|121637633|ref|YP_977856.1| hypothetical protein BCG_1764c [Mycobacterium bovis BCG str. Pasteur 1173P2] 71 more sequence titles Length=236 Score = 471 bits (1212), Expect = 3e-131, Method: Compositional matrix adjust. Identities = 235/236 (99%), Positives = 236/236 (100%), Gaps = 0/236 (0%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 +QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH Sbjct 1 MQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR Sbjct 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 Query 121 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY Sbjct 121 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG 236 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG Sbjct 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG 236 >gi|289447340|ref|ZP_06437084.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289420298|gb|EFD17499.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=236 Score = 468 bits (1205), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 234/236 (99%), Positives = 235/236 (99%), Gaps = 0/236 (0%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 +QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH Sbjct 1 MQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPT AECDPELLTLWISRR Sbjct 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTLAECDPELLTLWISRR 120 Query 121 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY Sbjct 121 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG 236 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG Sbjct 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG 236 >gi|340626730|ref|YP_004745182.1| hypothetical protein MCAN_17361 [Mycobacterium canettii CIPT 140010059] gi|340004920|emb|CCC44068.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=236 Score = 467 bits (1201), Expect = 7e-130, Method: Compositional matrix adjust. Identities = 232/236 (99%), Positives = 235/236 (99%), Gaps = 0/236 (0%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 +QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH Sbjct 1 MQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 DRIIEAVPEH GGGYRFTVAGEELRPVLQTLGDWVSRWLMADP+PAECDPELLTLWISRR Sbjct 61 DRIIEAVPEHAGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPSPAECDPELLTLWISRR 120 Query 121 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY Sbjct 121 VNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQMPEAHGG 236 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQ+PEAHGG Sbjct 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQIPEAHGG 236 >gi|15841187|ref|NP_336224.1| hypothetical protein MT1766 [Mycobacterium tuberculosis CDC1551] gi|13881408|gb|AAK46038.1| hypothetical protein MT1766 [Mycobacterium tuberculosis CDC1551] gi|323719817|gb|EGB28931.1| hypothetical protein TMMG_00977 [Mycobacterium tuberculosis CDC1551A] Length=187 Score = 375 bits (964), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 186/187 (99%), Positives = 187/187 (100%), Gaps = 0/187 (0%) Query 50 VLAQRLRRLQHDRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECD 109 +LAQRLRRLQHDRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECD Sbjct 1 MLAQRLRRLQHDRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECD 60 Query 110 PELLTLWISRRVNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTV 169 PELLTLWISRRVNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTV Sbjct 61 PELLTLWISRRVNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTV 120 Query 170 RGHPRDLYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQ 229 RGHPRDLYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQ Sbjct 121 RGHPRDLYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQ 180 Query 230 MPEAHGG 236 MPEAHGG Sbjct 181 MPEAHGG 187 >gi|284030103|ref|YP_003380034.1| HxlR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809396|gb|ADB31235.1| transcriptional regulator, HxlR family [Kribbella flavida DSM 17836] Length=225 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/221 (50%), Positives = 141/221 (64%), Gaps = 0/221 (0%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y QYCPVA A+ +L DRW LIVREL+ G RF +I+RGLPGISR++L QRL L+ + Sbjct 4 YAQYCPVALASAVLADRWMPLIVRELVLGSRRFNDIDRGLPGISRTLLKQRLLHLERKGV 63 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 +E VP G Y+ T AG +L V+ +G+W RW+ A+P P E DP LT W+SRR++ Sbjct 64 LERVPVARGHEYQLTPAGRDLEGVIMAIGEWAVRWMFAEPEPREVDPITLTWWMSRRIDQ 123 Query 124 EALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGR 183 +ALPG+RV VEF Y G P WLVL+ SVC P D+ V P L RV+SG Sbjct 124 QALPGQRVSVEFDYRGADPTRIWLVLDRQQASVCTEHPGFASDVVVTTEPVALMRVFSGI 183 Query 184 STLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAV 224 TL+ +A IEL G P + RA P+W WSPFAPA+R+ + Sbjct 184 VTLSQATAAGSIELTGPPWLVRALPTWFLWSPFAPAVRERI 224 >gi|333917951|ref|YP_004491532.1| hypothetical protein AS9A_0273 [Amycolicicoccus subflavus DQS3-9A1] gi|333480172|gb|AEF38732.1| hypothetical protein AS9A_0273 [Amycolicicoccus subflavus DQS3-9A1] Length=227 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/225 (42%), Positives = 134/225 (60%), Gaps = 9/225 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQ+CPVA+AAE++ RWT+L++REL+ G RF +I RG+P +SR++LA+RLR+L I Sbjct 6 YGQFCPVAKAAEVIDQRWTVLVLRELVAGSSRFNDIHRGVPRMSRTLLARRLRQLAAGGI 65 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWL--MADPTPAECDPELLTLWISRRV 121 + G Y+ T AG + R ++ LG W RW+ +AD A+ DP L + R+V Sbjct 66 VARKEGADGPEYKLTEAGSQFRSIIDALGHWGIRWIDSLAD---ADFDPAFLLWDMHRKV 122 Query 122 NTEALPGRRVVVEFRYH---GERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYR 178 +T ALP RR+V+E +H GE W WLVL+ + VC HDP D+T++ RD R Sbjct 123 DTSALPDRRIVLEINFHDIPGELRNW-WLVLQQSQVDVCQHDPGFGTDVTLKTGIRDFIR 181 Query 179 VYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 V+ G A + A +E+ G A+RRA P W PF + R A Sbjct 182 VWRGEVAWADAVCAGELEVVGPRALRRAVPDWFRDRPFLSSARSA 226 >gi|331694552|ref|YP_004330791.1| HxlR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949241|gb|AEA22938.1| transcriptional regulator, HxlR family [Pseudonocardia dioxanivorans CB1190] Length=241 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/219 (44%), Positives = 129/219 (59%), Gaps = 12/219 (5%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQYCP+ R+ E+LGDRWTLL+VR+LL G RF E+ RGLPG+SR +L++RL +LQ + Sbjct 4 YGQYCPITRSLEVLGDRWTLLVVRDLLVGATRFNELARGLPGMSRGLLSKRLDQLQRHGL 63 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 +E H GG YR T A EELRP++ L +W +RW +P E DP +L WI ++ Sbjct 64 VE----HVGGEYRPTPACEELRPIVFGLAEWGARWAFGEPRSDELDPVVLMWWIRAGIDP 119 Query 124 EALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGR 183 GRR V+ R W V++P D+S+C+ DP VD+T+R LY+V+ GR Sbjct 120 APFDGRRAVLHVLLPDTRRQRFWFVVDPTDVSLCMTDPGHDVDVTLRSSLGVLYQVWEGR 179 Query 184 STLAAEISAERIELDG----LPAMRRAFPSWMAWSPFAP 218 L +ELDG + MRRA + SP AP Sbjct 180 IALDVATRTGLVELDGRRDTVARMRRA----LRLSPVAP 214 >gi|317125768|ref|YP_004099880.1| HxlR family transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589856|gb|ADU49153.1| transcriptional regulator, HxlR family [Intrasporangium calvum DSM 43043] Length=222 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 93/216 (44%), Positives = 126/216 (59%), Gaps = 5/216 (2%) Query 5 GQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRII 64 GQYCPV+RA ++LG+RWTLLI+R++L G RF +I RGLPG+SR++LA RLR+L+ +I Sbjct 9 GQYCPVSRALDVLGERWTLLILRDMLVGATRFNDIARGLPGLSRTLLATRLRQLERAGVI 68 Query 65 EAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNTE 124 G Y T AG L P++ + +W +RW DP E D ELL W+ R++T Sbjct 69 ----ARDGTAYALTPAGRALEPLVFGMAEWGARWAFGDPEEHELDAELLVWWMHTRLDTS 124 Query 125 ALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGRS 184 L G R VV R+ E P W+V+E G SVC DP V LT+ R LYRV+ GR Sbjct 125 RLGGDRQVVHVRFADE-PKRFWIVVERGVPSVCTVDPGFDVTLTISSDVRSLYRVWLGRL 183 Query 185 TLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAM 220 L A + + + +DG R + SP APA+ Sbjct 184 PLGAAMRSGAVAVDGPRDAVRQVGDVLRLSPVAPAV 219 >gi|116254239|ref|YP_770077.1| hypothetical protein RL4512 [Rhizobium leguminosarum bv. viciae 3841] gi|115258887|emb|CAK09996.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length=230 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 88/224 (40%), Positives = 128/224 (58%), Gaps = 7/224 (3%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQ+CPV+ A+E+L RWT L+VRE L G RF E+ RGLP +S ++L++RL+ L+ + Sbjct 7 YGQFCPVSMASEILCSRWTTLVVREFLCGSTRFNELRRGLPKMSPALLSKRLKELEQSGV 66 Query 64 IEAVPEHTG-GGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVN 122 I G Y+ T AGEELRP++ LG+W RW+ + + DP LL + R ++ Sbjct 67 ITVTRSANGITDYQLTAAGEELRPLIIGLGNWAQRWMESRLSLKNLDPSLLMWDMRRSLD 126 Query 123 TEALPGRRVVVEFRY---HGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRV 179 T LP RR ++F Y + W WLV+E G + +C DP VDL V G R + + Sbjct 127 TRRLPTRRCTIQFLYPELSAAQKSW-WLVVENGKVDLCNFDPGYDVDLLVEGLLRSMTAI 185 Query 180 YSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA--PAMR 221 + G +T+ E AE ++L+G + R W+ S FA P MR Sbjct 186 WMGLTTIRQETDAETLKLEGDRVLARDMQEWLGLSVFAKTPRMR 229 >gi|54024467|ref|YP_118709.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54015975|dbj|BAD57345.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=229 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/215 (44%), Positives = 132/215 (62%), Gaps = 5/215 (2%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQYCP+ARA +LLG+RW+LLI+R+LL G RF ++ RGLPG+SRS+LA+RLR+ + + Sbjct 8 YGQYCPIARALDLLGERWSLLILRDLLLGSTRFNDLSRGLPGLSRSLLAKRLRQFERAGL 67 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 +E V G Y T AG +L PVL L +W + W P PAE D +LL W+ R++T Sbjct 68 VEKV----GIRYVPTQAGLDLEPVLFGLAEWGASWSFGAPDPAELDADLLVWWMHTRLDT 123 Query 124 EALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGR 183 LPG R V R+ + + W+V++ G SVC+ DP PVD+T+R LY+V+ GR Sbjct 124 TGLPGLRQVFAVRFTDDARRY-WIVVDRGAPSVCVTDPGFPVDVTIRSDVASLYQVWLGR 182 Query 184 STLAAEISAERIELDGLPAMRRAFPSWMAWSPFAP 218 + R+E G PA+ R + + SP AP Sbjct 183 LPIGHAQRTGRLEFLGPPALTRRMSTILRLSPVAP 217 >gi|220906603|ref|YP_002481914.1| HxlR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863214|gb|ACL43553.1| transcriptional regulator, HxlR family [Cyanothece sp. PCC 7425] Length=250 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 78/216 (37%), Positives = 126/216 (59%), Gaps = 9/216 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQ+CPVA+AAE+LGDRW L++RE+L+G F +I RG+P +SR++L QRL+ L+ + Sbjct 5 YGQFCPVAKAAEVLGDRWNPLVLREMLYGNRHFNDISRGVPLMSRALLVQRLKELEKAGV 64 Query 64 IEAVPEHTGGGYRF--TVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 I + + TG G+ + T AGE LRP+++ +G W +W P + D LL + RR+ Sbjct 65 IVSYEKETGQGHEYVLTPAGEALRPIIEAMGVWAQQWGSEQIAPEDLDDALLMWGMRRRI 124 Query 122 NTEALPGRRVVVEFRYHG------ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRD 175 N EA+P +++V++F + G + W WLV+E G++ VC DP V++ V Sbjct 125 NLEAVPSQKIVLQFDFRGLARGRRTQRSW-WLVIENGEVDVCQKDPGFEVNVLVLADLSA 183 Query 176 LYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWM 211 ++ G + L + + +G + R PSW+ Sbjct 184 FTHIWMGYTPLNPALQQGTVCFEGDRDLLRQVPSWL 219 >gi|333984144|ref|YP_004513354.1| HxlR family transcriptional regulator [Methylomonas methanica MC09] gi|333808185|gb|AEG00855.1| transcriptional regulator, HxlR family [Methylomonas methanica MC09] Length=227 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/217 (36%), Positives = 125/217 (58%), Gaps = 3/217 (1%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQ+CP+A+A E+L +RWTLLI+REL G RF E++RGL IS ++L +RL L + + Sbjct 3 YGQFCPIAKAMEILCERWTLLILRELHMGATRFNELQRGLTLISPTILTKRLNDLTNAEL 62 Query 64 I--EAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 I + +P G Y T +G+E P+L+ +GDW W D ++ D ELL L++ R + Sbjct 63 IMRKKIPGQRGYEYFLTQSGKETLPILKVIGDWGMCWARGDLRDSDLDVELLMLYLQRSI 122 Query 122 NTEALPGRRVVVEFRYHGERPLWA-WLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 E LPG + V+ F + + WLV++ ++ +CL DP VD+ + R + + Sbjct 123 KPEQLPGNQSVIRFEFTDLSKFGSWWLVVKGDNVDICLEDPGQDVDVYFTTNLRTMIDCW 182 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 G ++ +A I + + L G A+ R +W++ S FA Sbjct 183 MGDTSYSAAIKNKSLTLVGPSALTRNVQNWLSDSIFA 219 >gi|110634441|ref|YP_674649.1| HxlR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285425|gb|ABG63484.1| transcriptional regulator, HxlR family [Chelativorans sp. BNC1] Length=216 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/215 (39%), Positives = 124/215 (58%), Gaps = 5/215 (2%) Query 13 AAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRIIEAVPEHTG 72 A+E+L RWT LI+REL+ G RF ++ RG+P +S ++L++RL+ L+ I+ P G Sbjct 2 ASEILCSRWTTLIIRELMCGTTRFNDLRRGVPRMSPALLSKRLKELERAGIVRTAPSQAG 61 Query 73 -GGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNTEALPGRRV 131 YR T AGE+LRP++ +G W RW+ + T DP LL + R +N + LP +R Sbjct 62 PMEYRLTEAGEDLRPIILGIGFWGQRWVESQLTLKNLDPSLLMWDMRRNLNPKPLPPKRC 121 Query 132 VVEFRYHG---ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGRSTLAA 188 ++F+Y R W WLV++ G++ +C DP VDL V G R + V+ G S + Sbjct 122 TIQFQYPELPPSRRNW-WLVVDAGNVDLCGFDPGFEVDLLVTGSLRSMTAVWMGLSIVRK 180 Query 189 EISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 E+ A R+EL G P + RA W+ S FAP R+ Sbjct 181 EVEAGRLELIGDPQIARAMQQWLGLSTFAPETRRV 215 >gi|302865925|ref|YP_003834562.1| helix-turn-helix HxlR-like protein [Micromonospora aurantiaca ATCC 27029] gi|302568784|gb|ADL44986.1| helix-turn-helix HxlR type [Micromonospora aurantiaca ATCC 27029] Length=224 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/221 (42%), Positives = 128/221 (58%), Gaps = 5/221 (2%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA+A ELL +RWTLL+VREL+ G RF E+ RGLP +S ++L++RL +L + Sbjct 5 YHQFCPVAKAMELLDERWTLLVVRELVSGSERFNELRRGLPRMSPTLLSRRLHQLVRAGV 64 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 +E + Y T AG ELRPV++ LG W RW+ + A+ DP+LL + R V+ Sbjct 65 VERRVDGADVRYVPTAAGRELRPVVEALGAWGVRWI-GELGDADLDPKLLLWDMHRHVDH 123 Query 124 EALPGRRVVVEFRYHG---ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 +A+P R VV FR+ + W W+V+ G+ VC DP V +TV R L +V+ Sbjct 124 DAVPLGRTVVRFRFRDVPTTQRDW-WMVIAAGEADVCDSDPGHDVTVTVTAELRALVQVW 182 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMR 221 G AA + +E+ G A+RRA P W SPFA R Sbjct 183 MGDLEWAAALRGGAVEVTGPEALRRAAPGWFTLSPFAAVPR 223 >gi|315502481|ref|YP_004081368.1| HxlR family transcriptional regulator [Micromonospora sp. L5] gi|315409100|gb|ADU07217.1| transcriptional regulator, HxlR family [Micromonospora sp. L5] Length=224 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/221 (42%), Positives = 128/221 (58%), Gaps = 5/221 (2%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA+A ELL +RWTLL+VREL+ G RF E+ RGLP +S ++L++RL +L + Sbjct 5 YHQFCPVAKAMELLDERWTLLVVRELVSGSERFNELRRGLPRMSPTLLSRRLHQLVRAGV 64 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 +E + Y T AG ELRPV++ LG W RW+ + A+ DP+LL + R V+ Sbjct 65 VERRVDGADVRYVPTAAGRELRPVVEALGAWGVRWI-GELGDADLDPKLLLWDMHRHVDH 123 Query 124 EALPGRRVVVEFRYHG---ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 +A+P R VV FR+ + W W+V+ G+ VC DP V +TV R L +V+ Sbjct 124 DAVPPGRTVVRFRFRDVPTTQRDW-WMVIAAGEADVCDSDPGHDVTVTVTADLRALVQVW 182 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMR 221 G AA + +E+ G A+RRA P W SPFA R Sbjct 183 MGDLEWAAALRGGAVEVAGPEALRRAAPGWFTLSPFAAVPR 223 >gi|336288061|gb|AEI30336.1| transcriptional regulator HxlR family [uncultured microorganism] Length=228 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/213 (39%), Positives = 121/213 (57%), Gaps = 5/213 (2%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA+A E+LG++WTLLI+RELL G RF E++RGL IS ++L +RL L + Sbjct 3 YAQFCPVAKATEILGEKWTLLIIRELLMGGTRFNELQRGLGLISPTLLTKRLNDLADAGV 62 Query 64 I--EAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 + + G Y T G EL PV+ LG+W RW + D ELL L++ R + Sbjct 63 VIKRKMGGQRGHEYLLTAMGRELLPVVMQLGEWGMRWARGALPDKDLDVELLMLYLQRSI 122 Query 122 NTEALPGRRVVVEFRYHGERPL--WAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRV 179 TEALPG+ V+ F++ + L W WL+++ I VC DP VD+ R + +V Sbjct 123 KTEALPGKETVIRFKFSDLKLLSDW-WLLVDGSGIDVCAQDPGRDVDIYFGTDLRTMIQV 181 Query 180 YSGRSTLAAEISAERIELDGLPAMRRAFPSWMA 212 + G + A ++ R+++ G A+ R SW+A Sbjct 182 WMGDLSYRAAMADGRMKIVGPSALTRDIKSWLA 214 >gi|229489532|ref|ZP_04383395.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229323629|gb|EEN89387.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=225 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/225 (38%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 Y Q+CPVA+A ELL +RWTLL++REL+ G F ++ RGLP +S ++L+ RL +L Sbjct 3 SSYHQFCPVAKAMELLDERWTLLLLRELIMGSEHFNDLRRGLPRMSPTLLSTRLHQLAVA 62 Query 62 RIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 I+E YR T AG ELRPV++ LG W +RW+ + + DP+LL + RRV Sbjct 63 GIVEREETDCVVSYRLTDAGRELRPVVEALGIWGTRWI-GELGDEDLDPKLLLWDMHRRV 121 Query 122 NTEALPGRRVVVEFRYHGERP---LWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYR 178 + +P + VV F + G R W WLV+ G++ +C DP V ++V R + Sbjct 122 DHSVVPEGKTVVHFAFSGVRGHSRNW-WLVINSGEVDMCDIDPGFDVAVSVSAGLRQMTE 180 Query 179 VYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 ++ G T + I + + + G A+RR+ PSW S FA R A Sbjct 181 IWRGNLTWSDAIRSGDVTISGPTALRRSLPSWFELSTFASIPRPA 225 >gi|226305438|ref|YP_002765396.1| HxlR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226184553|dbj|BAH32657.1| putative HxlR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=225 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/225 (38%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 Y Q+CPVA+A ELL +RWTLL++REL+ G F ++ RGLP +S ++L+ RL +L Sbjct 3 SSYHQFCPVAKAMELLDERWTLLLLRELMMGSDHFNDLRRGLPRMSPTLLSTRLHQLAIA 62 Query 62 RIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 I+E YR T AG ELRPV++ LG W +RW+ + + DP+LL + RRV Sbjct 63 GIVEREETDCVVSYRLTDAGRELRPVVEALGIWGTRWI-GELGDEDLDPKLLLWDMHRRV 121 Query 122 NTEALPGRRVVVEFRYHGERP---LWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYR 178 + +P + VV F + G R W WLV+ G++ +C DP V ++V R + Sbjct 122 DHSVVPDGKTVVHFVFSGVREHSRNW-WLVINSGEVDMCDIDPGFDVAVSVSAGLRPMTE 180 Query 179 VYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 ++ G T + I + + + G A+RR+ PSW S FA R A Sbjct 181 IWRGNLTWSDAIRSGDVTISGPTALRRSLPSWFELSTFASIPRPA 225 >gi|260429848|ref|ZP_05783824.1| transcriptional regulator [Citreicella sp. SE45] gi|260419331|gb|EEX12585.1| transcriptional regulator [Citreicella sp. SE45] Length=230 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/222 (40%), Positives = 120/222 (55%), Gaps = 6/222 (2%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 Q YGQ+CP+ARA+E+L RWT LIVREL FG R+ ++ RGLP IS ++L+QRL+ L+ Sbjct 5 QGYGQFCPIARASEVLTTRWTPLIVRELYFGSSRYADLRRGLPRISSALLSQRLKELEQG 64 Query 62 RIIEAVPEHTGGG--YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAE-CDPELLTLWIS 118 I+ +P TG G Y T AG L PVL+++G W D T E DP+LL I Sbjct 65 GIVTCIPAETGKGNVYGLTEAGRALFPVLESMGRWAQAHSRDDMTKDENLDPDLLMWNIR 124 Query 119 RRVNTEALPG-RRVVVEFRYHG--ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRD 175 RR E +P ++ V F + G R WL+ G++ +CL DP DLTV R Sbjct 125 RRATHEGIPADQQFTVCFHFLGVPARKSRFWLLFRDGEVEICLRDPGYDTDLTVTAGIRT 184 Query 176 LYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 + R++ G L + I L+G AF W + S A Sbjct 185 MTRIWLGHLPLETALRGRDIVLEGDRPHVAAFSRWFSLSALA 226 >gi|158339933|ref|YP_001521103.1| transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310174|gb|ABW31789.1| transcriptional regulator [Acaryochloris marina MBIC11017] Length=240 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/217 (36%), Positives = 120/217 (56%), Gaps = 7/217 (3%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 + YGQYCPVARAAE + +RWT L++REL+ G F EI RG+P +SR++L +RL+ L+ Sbjct 3 KSYGQYCPVARAAEAICERWTPLVLRELMSGSCHFNEISRGVPLMSRALLIKRLKELETA 62 Query 62 RIIEAVPEHTGGG--YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISR 119 II + +G G Y+ T AGE LRP+++ +G+W +W TP + DP+L + R Sbjct 63 GIITRQDKKSGQGSIYQLTPAGEALRPIIKGMGEWAQQWGSDRLTPEQLDPDLFMWGLRR 122 Query 120 RVNTEALPGRRVVVEFRYHG-----ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPR 174 N EA+P ++V++F G + W+V E + VC+ DP VD+ + Sbjct 123 GFNLEAMPDHKIVLQFDLRGIPRQRKTKRSYWVVTEKHRVDVCIQDPGFDVDVLIAADLS 182 Query 175 DLYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWM 211 + V G L + A+ I+ +G P+W+ Sbjct 183 AIIHVVMGYDPLDLALRAKTIQFEGNQDWVGQLPTWL 219 >gi|170728373|ref|YP_001762399.1| HxlR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813720|gb|ACA88304.1| transcriptional regulator, HxlR family [Shewanella woodyi ATCC 51908] Length=230 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/221 (36%), Positives = 129/221 (59%), Gaps = 10/221 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA AAE+L RWT++++REL+ G RF E+ RG+P +S ++L+QRL+ L+ I Sbjct 6 YKQFCPVAMAAEVLCTRWTMVLIRELVAGTNRFNELRRGVPKMSPTLLSQRLKELETAGI 65 Query 64 IEAVPEHTGGG---YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +E + G Y T AG++L PV++ +G+W +W+ + + DP LL + R Sbjct 66 LEKKEHSSEKGIFEYHLTKAGKDLYPVVEAMGNWGQKWVESQISLKNLDPSLLMWDMRRN 125 Query 121 VNTEALPGRRVVVEFRY---HGERPLWAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRDL 176 ++ LP ++ V++F Y + W WLV+EP GD+ +C DP +DL V R + Sbjct 126 LDPSPLPTKQTVIQFLYPELSRSKQRW-WLVIEPKGDVDLCWADPGFDIDLYVTTDLRTM 184 Query 177 YRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 ++ G +T+ E +E+++L G + + W+ SPFA Sbjct 185 TAIWMGLTTVKRE--SEQMKLIGAKEIASSMQIWLGLSPFA 223 >gi|319764355|ref|YP_004128292.1| helix-turn-helix hxlr type [Alicycliphilus denitrificans BC] gi|330826347|ref|YP_004389650.1| HxlR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118916|gb|ADV01405.1| helix-turn-helix HxlR type [Alicycliphilus denitrificans BC] gi|329311719|gb|AEB86134.1| transcriptional regulator, HxlR family [Alicycliphilus denitrificans K601] Length=232 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/225 (40%), Positives = 120/225 (54%), Gaps = 8/225 (3%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA AAE+L RWTLL+VREL+ G F ++ RG+P +S ++LA+RLR L+ I Sbjct 6 YRQFCPVAMAAEVLCCRWTLLVVRELMMGSSHFNDLRRGVPRMSSALLAKRLRELEAAGI 65 Query 64 IE---AVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +E A G YR T AG ELRP+++ +G W RW+ + T D LL I R Sbjct 66 VERTRAAGAAEGHVYRLTQAGRELRPIVEAVGAWGQRWVKTEATLRHLDANLLMWDIRRH 125 Query 121 VNTEALPGRRVVVEFRYHGERPLWA---WLVLEPG-DISVCLHDPCLPVDLTVRGHPRDL 176 V+ E P R +EF + +RPL WL++EP D+ +C DP VDL V R L Sbjct 126 VHPEPAPAARTTIEFIF-CDRPLSERNYWLIVEPACDVDLCTVDPGFEVDLYVSTDLRTL 184 Query 177 YRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMR 221 ++ G A + I G P + A W+ S FA R Sbjct 185 TALWLGHVGWAQASGSGAIRFMGTPERQSALRRWLGTSTFAAVPR 229 >gi|197106568|ref|YP_002131945.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196479988|gb|ACG79516.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length=235 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/211 (39%), Positives = 113/211 (54%), Gaps = 7/211 (3%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 ++ YGQ+CPVA+ AE+ RWT LIVREL FGP RF+E+ G+P +SR++L QRL L+ Sbjct 1 MKGYGQFCPVAKTAEIFAQRWTPLIVRELCFGPHRFSELHAGVPTMSRALLVQRLAELEE 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +I P G YR T AGE LR ++ + W R+ PA+ DP +L + R+ Sbjct 61 AGVIATEPIGQGKLYRLTPAGECLREIIVQMSAWGQRYGQGRLGPADLDPTMLVWSMKRQ 120 Query 121 VNTEALPGRRVVV--EFR----YHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPR 174 V+ LP R VVV EFR H R W W++L P D+ VC P VD+ V Sbjct 121 VDPRELPDRDVVVRLEFRGVPKAHAARRYW-WIILRPDDVEVCFKAPEQDVDVVVSADLE 179 Query 175 DLYRVYSGRSTLAAEISAERIELDGLPAMRR 205 RV+ G + +A + G P + R Sbjct 180 TFIRVWMGYAGFSAAQREGMAAISGDPQLVR 210 >gi|319782629|ref|YP_004142105.1| HxlR type helix-turn-helix- domain containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168517|gb|ADV12055.1| helix-turn-helix HxlR type [Mesorhizobium ciceri biovar biserrulae WSM1271] Length=230 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/221 (37%), Positives = 126/221 (58%), Gaps = 10/221 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CP++ AAE+L RWT++++REL+ G RF ++ RG+P +S ++L+QRL+ L+ I Sbjct 6 YKQFCPLSMAAEVLCTRWTMVLMRELVAGSTRFNDLRRGVPKMSPTLLSQRLKELEIAGI 65 Query 64 IE--AVPEHTG-GGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +E VP G YR T AG +LRPV++ +G W +W+ + + DP LL + R Sbjct 66 LERKEVPGEKGIFEYRLTEAGRDLRPVVEAMGFWGQKWVESRLSLKNLDPSLLMWDMRRN 125 Query 121 VNTEALPGRRVVVEFRYH---GERPLWAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRDL 176 +N LP R V++F Y + W WL++E G++ +C +DP VDL V + Sbjct 126 LNPSPLPEGRTVIQFLYQDLPASKRSW-WLIVEKHGEVDLCWYDPGFDVDLYVSTDLHTM 184 Query 177 YRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 ++ G L E + R+ L G A+ R +W+ SPFA Sbjct 185 TAIWMG--VLTVEKAGARVALTGDQAIGRKMQTWLGLSPFA 223 >gi|288921522|ref|ZP_06415797.1| transcriptional regulator, HxlR family [Frankia sp. EUN1f] gi|288347090|gb|EFC81392.1| transcriptional regulator, HxlR family [Frankia sp. EUN1f] Length=236 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/226 (36%), Positives = 113/226 (50%), Gaps = 2/226 (0%) Query 6 QYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRII- 64 +YCP+A E+LGDRWT L++REL G F EI RGLP +SR++L+QRLR L+ ++ Sbjct 6 EYCPIAVGVEILGDRWTPLVIRELSVGATGFNEIARGLPRLSRTLLSQRLRMLERRGLVW 65 Query 65 -EAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 E P Y T +G L V+ +LG W + W DPT ECD L + + N Sbjct 66 KEQAPRGQQVRYSLTASGAALSSVVWSLGQWAAEWTFGDPTDEECDGLTLMWRLHQCANP 125 Query 124 EALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGR 183 ALP R VV G WL + G ++VC +P DL + G ++R Sbjct 126 GALPAERTVVHLVLTGPGAAQGWLDIADGVVTVCQEEPAREPDLVIEGPTSAMHRWLMSV 185 Query 184 STLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAVVSVDQ 229 +T + ++ L G + R FP W S FA ++ +A DQ Sbjct 186 ATFRELRMSGQVRLTGPAGLVRQFPDWFITSMFAESLGRAKQRQDQ 231 >gi|13471772|ref|NP_103339.1| hypothetical protein mlr1855 [Mesorhizobium loti MAFF303099] gi|14022516|dbj|BAB49125.1| mlr1855 [Mesorhizobium loti MAFF303099] Length=230 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/221 (36%), Positives = 126/221 (58%), Gaps = 10/221 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CP++ AAE+L RWT++++REL+ G RF ++ RG+P +S ++L+QRL+ L+ I Sbjct 6 YKQFCPLSMAAEVLCTRWTMVLMRELVAGSTRFNDLRRGVPKMSPTLLSQRLKELELAGI 65 Query 64 IE--AVPEHTG-GGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +E VP G YR T AG +LRPV++ +G W +W+ + + DP LL + R Sbjct 66 VERKEVPGEKGIFDYRLTEAGRDLRPVVEAMGFWGQKWVESRLSLKNLDPSLLMWDMRRN 125 Query 121 VNTEALPGRRVVVEFRYH---GERPLWAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRDL 176 +N LP R V++F Y + W WL++E G++ +C +DP VDL V + Sbjct 126 LNPSPLPEGRTVIQFLYQDLPASKRSW-WLIVEKHGEVDLCWYDPGFDVDLYVSTDLHTM 184 Query 177 YRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 ++ G L E + ++ L G A+ + +W+ SPFA Sbjct 185 TAIWMG--LLTVEKAGGKVALTGDQAIGKKMQTWLGLSPFA 223 >gi|119714213|ref|YP_919355.1| helix-turn-helix, HxlR type [Nocardioides sp. JS614] gi|119526122|gb|ABL79492.1| helix-turn-helix, HxlR type [Nocardioides sp. JS614] Length=233 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 89/220 (41%), Positives = 125/220 (57%), Gaps = 5/220 (2%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 ++ YGQYCP+AR AE+ +RWT LI+R L G F EI G PG+S +VLAQRLR+L+ Sbjct 1 MRTYGQYCPIARGAEIFAERWTPLIIRNLHLGCETFGEILEGAPGLSHTVLAQRLRQLER 60 Query 61 DRIIEAVPEHTGGGYRF--TVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWIS 118 I+E P+ G G+R+ T +G++L V TLG+W +RWL + P DP + + Sbjct 61 LGIVEVTPKAQGRGHRYQLTTSGDDLFKVCTTLGEWGARWL--EIAPENLDPYVALWSMC 118 Query 119 RRVNTEALPGRRVVVEFRYHGERPLW-AWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLY 177 + E LP RRVVV + G RP WL+LE G+ +C P L DL + Sbjct 119 NALRPERLPRRRVVVRLDFTGFRPHERYWLLLEHGEAEICKTYPGLDEDLFITADAEAFV 178 Query 178 RVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 + ++G+ + A RI++DG + RAFP W A S FA Sbjct 179 KWHAGQLSWAEATRDSRIQVDGPSWLVRAFPQWNARSMFA 218 >gi|312195445|ref|YP_004015506.1| HxlR family transcriptional regulator [Frankia sp. EuI1c] gi|311226781|gb|ADP79636.1| transcriptional regulator, HxlR family [Frankia sp. EuI1c] Length=270 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/222 (35%), Positives = 115/222 (52%), Gaps = 2/222 (0%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 + YCP+AR E+LGDRWT L++REL+ G F +I RGLP +SR++LAQRLR L+ + Sbjct 4 HSDYCPIARGVEILGDRWTPLVIRELMVGAEGFNDIHRGLPRMSRTLLAQRLRALERHGL 63 Query 64 I--EAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 + EA G Y T AG + P++ +G W + W+ DP +CD L + + Sbjct 64 VRREAAERGRPGRYVLTEAGWSITPIIWAMGQWAAEWVFDDPEDEDCDGLSLIWRLHQHA 123 Query 122 NTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYS 181 + LP RR +V G WL +E ++VC +P V L V R+++R Sbjct 124 VADRLPPRRTLVHITLTGPGSAEGWLDVERPGMTVCSEEPRGDVHLRVTASTREMHRWLL 183 Query 182 GRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 GR+ A + A E+ G + R FP+W + FA + Sbjct 184 GRTPFRALLDAGSAEMHGPAPLARDFPTWFDTAFFAAGFERG 225 >gi|343926167|ref|ZP_08765676.1| putative HxlR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343763796|dbj|GAA12602.1| putative HxlR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=224 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/226 (38%), Positives = 118/226 (53%), Gaps = 5/226 (2%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 + YGQ+CPVA+A ELL +RWT+LIVRE+L G F E+ RG+P +S ++L +RLR L+ Sbjct 1 MTSYGQFCPVAKAMELLDERWTILIVREMLLGSRHFNELRRGVPKMSPALLTKRLRSLER 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +I Y T G+EL V++ L W RW+ + A+ DP LL + R Sbjct 61 AGVIRRSDIGGRSVYSLTDMGQELTTVVEALSQWGIRWV-GELGDADLDPHLLMWDMRRT 119 Query 121 VNTEALPGRRVVVEFRYH---GERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLY 177 + E P RR +V+FR+ G W WLV+ D VC DP VD T+ R L Sbjct 120 IAVERWPRRRTMVQFRFRDVIGRSGTW-WLVVSGDDAQVCDFDPGYEVDATIVTDLRTLT 178 Query 178 RVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 ++ G +SA+R E+ + R PSW+ S A R A Sbjct 179 EIWRGDIDWRYALSADRAEVHAPAEIAREIPSWIGQSLSAAIPRPA 224 >gi|254466620|ref|ZP_05080031.1| hypothetical protein RBY4I_3230 [Rhodobacterales bacterium Y4I] gi|206687528|gb|EDZ48010.1| hypothetical protein RBY4I_3230 [Rhodobacterales bacterium Y4I] Length=242 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 85/244 (35%), Positives = 127/244 (53%), Gaps = 14/244 (5%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 ++ YGQ+CP+A+AAE+ +RWT L++R L G RF++I RG+P +S ++L QRLR+L+ Sbjct 1 MKSYGQFCPIAKAAEIFCERWTALVIRNLGAGAERFSDIHRGVPHMSATLLTQRLRQLEA 60 Query 61 DRIIEAVPEHTGGG--YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWIS 118 + ++E TG Y T AG E P++ LG W RW + E D LL + Sbjct 61 EGLVERRRSDTGKSWTYHLTDAGAEFLPLVGALGIWGQRWTRRELAEGELDLGLLIWGLE 120 Query 119 RRVNTEALPGRRVVVEFRYHG--ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDL 176 V+ A RR V+ E + W V E G + +C+ DP DL + ++L Sbjct 121 YSVDPTAFGPRRHVLRLDVSDQPEHKRFYWFVCEDGSLDLCVSDPGGGTDLYLEATLKNL 180 Query 177 YRVYSGRSTLAAEISAERIELDGLPAMRRAFPSW-----MAWSPFA---PAMRQAVVSVD 228 RVY G LA+ I R+ +DG P + R W MA +P A PA R ++S+ Sbjct 181 IRVYRGDVALASAIEDGRLTVDGKPKLLRRLGRWFNFDTMAKTPLAVGGPARR--LISMS 238 Query 229 QMPE 232 P+ Sbjct 239 SEPQ 242 >gi|337267804|ref|YP_004611859.1| HxlR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gi|336028114|gb|AEH87765.1| transcriptional regulator, HxlR family [Mesorhizobium opportunistum WSM2075] Length=230 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/222 (37%), Positives = 128/222 (58%), Gaps = 12/222 (5%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CP++ AAE+L RWT++++REL+ G RF ++ RG+P +S ++L+QRL+ L+ I Sbjct 6 YKQFCPLSMAAEVLCTRWTMVLMRELVAGSTRFNDLRRGVPKMSPTLLSQRLKELELAGI 65 Query 64 IE--AVPEHTG-GGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +E AV G Y+ T AG +LRPV++ +G W +W+ + + DP LL + R Sbjct 66 VERKAVQGEKGIFDYQLTEAGRDLRPVVEAMGFWGQKWVESRLSLKNLDPSLLMWDMRRN 125 Query 121 VNTEALPGRRVVVEFRYHGERPL----WAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRD 175 +N LP R V++F Y E P+ W WL++E G++ +C +DP VDL V Sbjct 126 LNPSPLPDGRTVIQFLYQ-ELPVSKRSW-WLIVEKHGEVDLCWYDPGFEVDLYVSTDLHT 183 Query 176 LYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 + ++ G L E + ++ L G A+ R +W+ SPFA Sbjct 184 MTAIWMG--LLTVEKAGAKVALTGDQAIGRKMQTWLGLSPFA 223 >gi|269837674|ref|YP_003319902.1| transcriptional regulator, HxlR family [Sphaerobacter thermophilus DSM 20745] gi|269786937|gb|ACZ39080.1| transcriptional regulator, HxlR family [Sphaerobacter thermophilus DSM 20745] Length=253 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/217 (38%), Positives = 116/217 (54%), Gaps = 4/217 (1%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CP+A+ AE+ +RWT LI+RE+L G RF EI+RG+P IS+S+LA RLR L+ + I Sbjct 4 YRQFCPIAKGAEIFAERWTPLILREMLCGSHRFAEIQRGIPRISQSLLATRLRSLEREGI 63 Query 64 IEAVPEHTGGG--YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 IE P G G Y T AG EL V++ LG W RW + + DP + ++ R + Sbjct 64 IERRPARDGHGFEYHLTPAGRELGTVVELLGGWGYRWALGRLRAEDLDPPSVLWFLHRYI 123 Query 122 NTEALPGRRVVVEFRYHGERPLWA-WLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVY 180 E LP VVV + PL A WL+L + +C D VDL V L + Sbjct 124 RVERLPAETVVVRVDLRDD-PLHAWWLILRRTGVELCFRDEGFSVDLWVTADAPTLAAII 182 Query 181 SGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 G A + + R+++DG + R FP W+ + F Sbjct 183 LGELEPRAAMRSGRLQVDGPRPLVRQFPDWLGVTQFT 219 >gi|91789231|ref|YP_550183.1| HxlR family transcriptional regulator [Polaromonas sp. JS666] gi|91698456|gb|ABE45285.1| transcriptional regulator, HxlR family [Polaromonas sp. JS666] Length=238 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/225 (37%), Positives = 114/225 (51%), Gaps = 4/225 (1%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 YGQ+C VAR AE+L +RWT L+VRELL G RF ++ RG+P +S S+L QRL RL+ Sbjct 3 NTYGQFCTVARGAEVLCERWTPLVVRELLCGSKRFNDLHRGVPRMSTSLLTQRLHRLEEF 62 Query 62 RIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRV 121 ++ Y T AGEELRP++ LG W ++W+ + E D LL + R Sbjct 63 GVVRRDAVGKVWEYSLTEAGEELRPIVMALGHWGAQWIGSRLRDDELDAGLLMWDMRRFA 122 Query 122 NTEALPGRRVVVEFRYHGERP---LWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYR 178 + P R VV+ F++ R W WLV+E G +C DP + L V R L Sbjct 123 CIQEFPSRPVVIHFQFRDARARERAW-WLVVEEGVADLCRDDPGRELTLVVDASVRALTE 181 Query 179 VYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 V++G T + + I +DG W+ S FA R A Sbjct 182 VWAGDRTPQQALQSREIRVDGAKRDAEDLWRWLGTSAFASTRRAA 226 >gi|299132626|ref|ZP_07025821.1| transcriptional regulator, HxlR family [Afipia sp. 1NLS2] gi|298592763|gb|EFI52963.1| transcriptional regulator, HxlR family [Afipia sp. 1NLS2] Length=233 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/228 (34%), Positives = 127/228 (56%), Gaps = 11/228 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA A+E+L RWTL+++REL+ G RF E+ RG+P +S ++L++RL+ L+ + Sbjct 6 YNQFCPVAMASEILCTRWTLIVLRELVCGSTRFNELRRGVPRMSPALLSKRLKELEAAGV 65 Query 64 IEAVPEHTGGG---YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 + G YR T AGEEL+P+++ +G W RW+ + DP LL I RR Sbjct 66 VTRTKSAAGPDLYEYRLTPAGEELKPIIEHVGVWGHRWVSTKSSLDNLDPNLLMWDIRRR 125 Query 121 VNTEALPGR-----RVVVEFRYHGERPLWAWLVLEPGD-ISVCLHDPCLPVDLTVRGHPR 174 + +++P + +V++ +R W WLV+ PGD + +C DP VDL + R Sbjct 126 IAPKSMPPQQRHTIQVILTDLVESKRN-W-WLVVGPGDEVDLCSIDPGFEVDLYLVTDLR 183 Query 175 DLYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQ 222 + ++ G +T+A S ER+ + G + +W+ S FA ++ Sbjct 184 TMTEIWMGYTTIARAKSDERLVVTGSRELEAGLETWLGLSSFAKVEKR 231 >gi|118618725|ref|YP_907057.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118570835|gb|ABL05586.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length=224 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/225 (36%), Positives = 118/225 (53%), Gaps = 3/225 (1%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 + Y Q+CPVA+A ELL +RWTLL+VRELL G F ++ RG+P +S ++L++RL+ L Sbjct 1 MSTYSQFCPVAKAMELLDERWTLLVVRELLLGSTHFNDLRRGVPKMSPALLSKRLKSLTK 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 ++E Y T G EL V+ LG+W RW+ + + DP LL I R Sbjct 61 AAVVERSDIEGRTSYSLTTCGRELATVVDALGEWGIRWI-PELGDEDLDPHLLMWDIRRT 119 Query 121 VNTEALPGRRVVVEFRYHGERPLWA--WLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYR 178 V +A P R V+ FR G P A WL++ G+ VC DP V TV L + Sbjct 120 VPIDAWPRARTVLAFRLAGVAPKAARWWLLVSEGEADVCDFDPGYQVAATVETSLLTLTQ 179 Query 179 VYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 ++ G + + + + +DG +RR+ P+W+ S A R A Sbjct 180 LWRGDQSWSRAMLNGGVRIDGPAQVRRSVPAWLGQSRLAAVPRPA 224 >gi|183981640|ref|YP_001849931.1| transcriptional regulator [Mycobacterium marinum M] gi|183174966|gb|ACC40076.1| transcriptional regulator [Mycobacterium marinum M] Length=224 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/225 (36%), Positives = 118/225 (53%), Gaps = 3/225 (1%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 + Y Q+CPVA+A ELL +RWTLL+VRELL G F ++ RG+P +S ++L++RL+ L Sbjct 1 MSTYSQFCPVAKAMELLDERWTLLVVRELLLGSTHFNDLRRGVPKMSPALLSKRLKSLTK 60 Query 61 DRIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 ++E Y T G EL V+ LG+W RW+ + + DP LL I R Sbjct 61 AGVVERSDIEGRTSYSLTTCGRELATVVDALGEWGIRWI-PELGDEDLDPHLLMWDIRRT 119 Query 121 VNTEALPGRRVVVEFRYHGERPLWA--WLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYR 178 V +A P R V+ FR G P A WL++ G+ VC DP V TV L + Sbjct 120 VPIDAWPRARTVLAFRLAGVAPKAARWWLLVSEGEADVCDFDPGYQVAATVETSLLTLTQ 179 Query 179 VYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 ++ G + + + + +DG +RR+ P+W+ S A R A Sbjct 180 LWRGDQSWSRAMLNGGVRIDGPAQVRRSVPAWLGQSRLAAVPRPA 224 >gi|254440608|ref|ZP_05054102.1| putative transcriptional regulator family [Octadecabacter antarcticus 307] gi|198256054|gb|EDY80368.1| putative transcriptional regulator family [Octadecabacter antarcticus 307] Length=217 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/216 (37%), Positives = 116/216 (54%), Gaps = 6/216 (2%) Query 13 AAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRIIEAVPEHTG 72 A E+L RWT L++RE L G RF +I RGLP +S ++L++RL L+ +I ++ +G Sbjct 2 ATEILCSRWTPLVIREFLCGSTRFNDIRRGLPRMSPTLLSKRLSELEAAGVIVSIKGTSG 61 Query 73 GG-YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNTEALPGRRV 131 YR T AGEELRP++ +G W RW+ + + DPELL + RR+N ++LP RRV Sbjct 62 SKEYRLTKAGEELRPIVMGIGAWGQRWVESKLSLNNLDPELLIWDMHRRLNIDSLPSRRV 121 Query 132 VVEFRYHG---ERPLWAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRDLYRVYSGRSTLA 187 ++F + R + WLV +P + C DP VDL V R + ++ G T+ Sbjct 122 CLQFVFTDLAVARQNY-WLVADPQSGVEACYKDPGYDVDLFVECSLRTMTAIWMGLETVR 180 Query 188 AEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 + RI L G + W+ SPF+ R A Sbjct 181 KAENDGRIVLTGTREIVTQMQEWLGLSPFSTVERMA 216 >gi|254489113|ref|ZP_05102317.1| transcriptional regulator, HxlR family [Roseobacter sp. GAI101] gi|214042121|gb|EEB82760.1| transcriptional regulator, HxlR family [Roseobacter sp. GAI101] Length=219 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/222 (37%), Positives = 123/222 (56%), Gaps = 11/222 (4%) Query 10 VARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRIIEAVP- 68 +A AAE L RWT+++VRE++ G RF ++ RG+P +S S+L+QRL L+ I+ P Sbjct 1 MAMAAETLCTRWTMVLVREMVAGSTRFNDLRRGVPRMSPSLLSQRLNELEVAGIVTRTPV 60 Query 69 --EHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNTEAL 126 E YR T AG +L+ V++ G W +W+ T DP LL + R ++ L Sbjct 61 ANEPNVHEYRLTEAGRDLKSVVEAFGIWGQKWIETQATLKNLDPSLLMWDMRRNLDPVPL 120 Query 127 PGRRVVVEFRY---HGERPLWAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRDLYRVYSG 182 P +R VV+FRY R W WLV++P + +C DP VDL V R + ++ G Sbjct 121 PPQRTVVKFRYPELAEARRHW-WLVVDPHAAVDLCSSDPGYDVDLWVTTDLRTMTSIWMG 179 Query 183 RSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQAV 224 + + + ++I+LDG PA+ R +W+ SPF+ A R+ V Sbjct 180 LTRVFD--AGDKIQLDGDPAIARTMQTWLGLSPFS-AQRKLV 218 >gi|118593791|ref|ZP_01551158.1| hypothetical protein SIAM614_28751 [Stappia aggregata IAM 12614] gi|118433636|gb|EAV40300.1| hypothetical protein SIAM614_28751 [Stappia aggregata IAM 12614] Length=249 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/222 (34%), Positives = 114/222 (52%), Gaps = 4/222 (1%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 ++ YGQ+C +A+AAE+ +RWT L++R L G RF++I RG+P +S ++L QRLR+L+ Sbjct 1 MKSYGQFCAIAKAAEIFCERWTALVIRNLGAGAERFSDIHRGVPHMSATLLTQRLRQLEA 60 Query 61 DRIIEAVPEHTGGG--YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWIS 118 + ++E TG Y T AG E P++ LG W RW + E D LL + Sbjct 61 EGLVERRRSGTGKSWTYHLTDAGAEFMPLVGALGIWGRRWTRRELAERELDLGLLIWGLE 120 Query 119 RRVNTEAL-PGRRVV-VEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDL 176 V+ A P R V+ ++ E + W V E G++ +C+ DP DL + DL Sbjct 121 YSVDPAAFGPERHVLRLDVSDQPEHKRFYWFVCESGNLDLCVSDPGGGTDLFLEATLEDL 180 Query 177 YRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAP 218 +VY G L A I R+ + G + R W ++ A Sbjct 181 IQVYRGDVALTAAIEDGRLTVHGTRKLSRRLRHWFNFNNVAK 222 >gi|108798771|ref|YP_638968.1| HxlR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867889|ref|YP_937841.1| HxlR family transcriptional regulator [Mycobacterium sp. KMS] gi|126434373|ref|YP_001070064.1| HxlR family transcriptional regulator [Mycobacterium sp. JLS] gi|108769190|gb|ABG07912.1| transcriptional regulator, HxlR family [Mycobacterium sp. MCS] gi|119693978|gb|ABL91051.1| transcriptional regulator, HxlR family [Mycobacterium sp. KMS] gi|126234173|gb|ABN97573.1| transcriptional regulator, HxlR family [Mycobacterium sp. JLS] Length=223 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 109/220 (50%), Gaps = 3/220 (1%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQ+CPVA+A E+L +RWTLL+VRELL G F E+ RG+P +S ++L++RL+ L + Sbjct 4 YGQFCPVAKAMEVLDERWTLLVVRELLLGSTHFNELRRGVPKMSPALLSKRLKSLIRAGV 63 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 +E Y T G+EL V+ LG W RW+ + A+ DP LL + R + Sbjct 64 VERSEIDGRTTYSLTPCGKELTAVVDALGAWGVRWI-GELGEADLDPHLLMWDMRRSIPL 122 Query 124 EALPGRRVVVEFRYHG--ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYS 181 P R + FR G R WLV+ G VC DP V TV R L ++ Sbjct 123 TEWPDGRTTLAFRLDGVEARASRWWLVVADGRADVCDFDPGYEVTATVSAGLRTLTAIWR 182 Query 182 GRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMR 221 G + + + + G +RRA P W+ A R Sbjct 183 GDISWQRALLDGGVSVSGPAEVRRAVPGWIGQGSLAAVPR 222 >gi|83952515|ref|ZP_00961246.1| hypothetical protein ISM_10196 [Roseovarius nubinhibens ISM] gi|83836188|gb|EAP75486.1| hypothetical protein ISM_10196 [Roseovarius nubinhibens ISM] Length=217 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/217 (36%), Positives = 120/217 (56%), Gaps = 8/217 (3%) Query 13 AAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRIIE-AVPEHT 71 AAE+L RW +L++REL+ G RF ++ RG+P +SRS+LA RLR L+ +IE + H Sbjct 2 AAEILCRRWMMLVIRELVAGTTRFNDLRRGVPKMSRSLLATRLRELEDFGVIERHLLSHQ 61 Query 72 GG--GYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNTEALPGR 129 G YR T AG +L PV++ +G+W +W+ + + D LL + R ++ LP R Sbjct 62 SGVHEYRLTEAGRDLLPVVEAVGNWGQKWVESRLSLRNLDASLLMWDMHRNLDPAPLPNR 121 Query 130 RVVVEFRYHG--ERPLWAWLVLEP-GDISVCLHDPCLPVDLTVRGHPRDLYRVYSGRSTL 186 R +++F + R WLV+EP GD+ +C DP +DL V + ++ G +T+ Sbjct 122 RCLIQFCFPELPPRQQNYWLVVEPSGDVELCRDDPGFELDLLVTTDLHSMTMIWMGLATV 181 Query 187 AAEISAERIELDGLPAMRRAFPSWMAWSPFAPAMRQA 223 ER++L G + +W+ SPFAP R+ Sbjct 182 QE--LRERLDLSGDREIAARMQTWLGLSPFAPTERRV 216 >gi|300787591|ref|YP_003767882.1| HxlR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797105|gb|ADJ47480.1| HxlR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340529126|gb|AEK44331.1| HxlR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=233 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/215 (38%), Positives = 108/215 (51%), Gaps = 2/215 (0%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y Q+CPVA AAE+LG WTLLIVRELL G R E+ G+PG+S ++LA+RL++L + Sbjct 4 YRQHCPVATAAEVLGQSWTLLIVRELLHGSSRTGELAEGVPGMSTALLARRLKQLADAGV 63 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNT 123 + +P Y T AG +L PV++ LG W RWL P + P LL L I R ++ Sbjct 64 VTRLPSTGEVRYALTPAGRDLAPVVEHLGYWGRRWL-PPPRSGDLKPRLLLLDICRGIDP 122 Query 124 EALPGRRVVVEFRYHG-ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSG 182 LP RV + R+ P W WLVL P S DP LP + L V+ G Sbjct 123 ARLPRERVALHLRFSEVPPPRWWWLVLSPEGASSTESDPRLPTAARIDCTVSALAGVWLG 182 Query 183 RSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 ++ I DG R W+ + FA Sbjct 183 HRMWREALAERAIRFDGTREAVRNTIGWLGRNRFA 217 >gi|331697580|ref|YP_004333819.1| HxlR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952269|gb|AEA25966.1| transcriptional regulator, HxlR family [Pseudonocardia dioxanivorans CB1190] Length=269 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/222 (36%), Positives = 114/222 (52%), Gaps = 11/222 (4%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQH 60 ++ YGQYCP+ARA+E+L RWT L++R L+FG F+ I G+P +SRS+L RL L+ Sbjct 1 MRTYGQYCPLARASEILASRWTPLVIRNLMFGADTFSAIASGVPQMSRSMLVTRLDELER 60 Query 61 DRIIEAVPEHTGGGYRF--TVAGEELRPVLQTLGDWVSRWLMADPTPAECDPEL-LTLWI 117 +I AVP+ G G R+ T AG +L V+ L +W RW+ + PA DP L W Sbjct 61 AGVISAVPKPRGRGRRYLLTEAGRDLATVVTALSEWGERWV--EIGPAHTDPGFALWAWC 118 Query 118 SRRVNTEALPGRRVVVEFRY----HGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHP 173 +++ ALP RVVV F + G + WL++E VC DP L V Sbjct 119 RVQLDRAALPTGRVVVAFVFRDQPRGNQHF--WLLVENHSAEVCYTDPGGEPALFVDAES 176 Query 174 RDLYRVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSP 215 + GR + + RIE+ G + P+W + P Sbjct 177 AAFVDWHRGRLSWDQARRSGRIEVHGDRRIAAQLPTWNRYEP 218 >gi|109898125|ref|YP_661380.1| HxlR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700406|gb|ABG40326.1| transcriptional regulator, HxlR family [Pseudoalteromonas atlantica T6c] Length=236 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/220 (32%), Positives = 105/220 (48%), Gaps = 6/220 (2%) Query 3 PYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDR 62 PYGQYCP+A +A L ++WTLLI RELLFG F +I RG+P +SR++L+ RL+ L + Sbjct 5 PYGQYCPLAMSAAFLCNKWTLLIFRELLFGSTNFNDISRGVPRMSRTLLSNRLKELVNIG 64 Query 63 IIEAVPEHTGG--GYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRR 120 +I + G Y T +G+ L V+ ++ W WL +P+ D L I R Sbjct 65 LITRQEKQATGQVDYVLTESGKALESVVFSMASWGQEWLETEPSLDNIDGSFLMWDIRRN 124 Query 121 VNT-EALPGRRVVVEFRYHG--ERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLY 177 V E LP + F E WL+ E G + +C D VD+ + R+L Sbjct 125 VRIHEDLPN-LFIAHFLLTDMPENKSEYWLIFENGQVDLCYVDRGFNVDVNIEVAARELT 183 Query 178 RVYSGRSTLAAEISAERIELDGLPAMRRAFPSWMAWSPFA 217 +++ G +A + ++ G W+ S A Sbjct 184 KIWMGWEDFSAAVKDHTLKFRGPKKYTEIAEYWLGCSTLA 223 >gi|326333108|ref|ZP_08199357.1| transcriptional regulator, HxlR family [Nocardioidaceae bacterium Broad-1] gi|325949091|gb|EGD41182.1| transcriptional regulator, HxlR family [Nocardioidaceae bacterium Broad-1] Length=216 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/205 (37%), Positives = 106/205 (52%), Gaps = 3/205 (1%) Query 15 ELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRIIEAVPEHTGGG 74 E+L +RWTLL+VRELL G F E+ RG+P +S ++L++RLR L+ II+ E Sbjct 2 EVLDERWTLLVVRELLLGSTHFNELRRGVPKMSPALLSKRLRTLERAGIIQRRGEGQRTS 61 Query 75 YRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLWISRRVNTEALPGRRVVVE 134 Y T +G+EL V+ L +W +RW+ A+ DP LL + R + + P +R VVE Sbjct 62 YHLTDSGQELATVVTALNEWGARWI-GSLGQADLDPHLLFWDMRRTIPIDVWPRQRTVVE 120 Query 135 FRYHGERPLWA--WLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRVYSGRSTLAAEISA 192 FR P A WLV+ VC DP VD + R L ++ G + A Sbjct 121 FRLTDVEPKAARWWLVVAADQAEVCDFDPGFEVDARLTCSLRTLTEIWRGDLAWPMALRA 180 Query 193 ERIELDGLPAMRRAFPSWMAWSPFA 217 E + + +RRA PSW+ S A Sbjct 181 EMVGIAAAEDVRRALPSWLGQSSAA 205 >gi|271961920|ref|YP_003336116.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505095|gb|ACZ83373.1| putative transcriptional regulator [Streptosporangium roseum DSM 43021] Length=229 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/192 (35%), Positives = 95/192 (50%), Gaps = 8/192 (4%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 Y QYC AR +L+G+RWTLL+VRELL GP RF +++ L G+ +LA R++ L+ + + Sbjct 6 YNQYCATARTLDLVGERWTLLLVRELLTGPKRFGDLQHSLRGLGTGLLAARMKHLEREGL 65 Query 64 IEAV---PEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAEC-DPELLTLWISR 119 + V P Y T AGEEL P + L W +W M +P E P L + Sbjct 66 VHKVTLPPPARTAAYALTRAGEELGPAVLALARWGLKWAMDEPREQETFHPGWAVLGLRA 125 Query 120 RVNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPCLPVDLTVRGHPRDLYRV 179 + EA G + EFR E ++ G I +H P D+T+ + Sbjct 126 CFDAEAATGLHALYEFRVEEE---IFHARIDDGTIET-VHGPAQHPDVTITIGGEVFRDL 181 Query 180 YSGRSTLAAEIS 191 +GRSTLA I+ Sbjct 182 AAGRSTLAEAIN 193 >gi|332672240|ref|YP_004455248.1| HxlR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332341278|gb|AEE47861.1| transcriptional regulator, HxlR family [Cellulomonas fimi ATCC 484] Length=208 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/197 (38%), Positives = 101/197 (52%), Gaps = 6/197 (3%) Query 4 YGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHDRI 63 YGQ+C VARA +++G+RWTLL+VRELL P RFT++ GLPGI+ ++L++RL LQ + Sbjct 4 YGQFCGVARALDVVGERWTLLLVRELLVAPRRFTDLRDGLPGIAPNLLSRRLTALQDAGV 63 Query 64 IEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAEC-DPELLTLWISRRVN 122 +E G Y T GEELR V++ L W +R + P P + PE L + + ++ Sbjct 64 VERRLADRGTVYALTPWGEELRGVVRELVRWAARSMAGGPAPDDAFHPEWLVVAMDALLD 123 Query 123 TEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDP-CLPVDLTVRGHPRDLYRVYS 181 P R V V G W L P + V P PVD TV L V S Sbjct 124 DVRTP-RPVRVAVHVDG---WWGTLDAGPDGVRVATGRPDDRPVDATVSAPGPLLLGVAS 179 Query 182 GRSTLAAEISAERIELD 198 G A+ +A + D Sbjct 180 GAVPFASLATAGLVSGD 196 >gi|120402047|ref|YP_951876.1| HxlR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954865|gb|ABM11870.1| transcriptional regulator, HxlR family [Mycobacterium vanbaalenii PYR-1] Length=227 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/208 (35%), Positives = 103/208 (50%), Gaps = 11/208 (5%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 + YGQ+C +A A +++G+RWTLLIVREL GP R+ E+ L GI S+LA R+R+L+ D Sbjct 10 RSYGQFCGLAHALDVVGERWTLLIVRELGSGPKRYGELADALAGIGTSLLATRMRQLETD 69 Query 62 RIIEAVPEHTGGG----YRFTVAGEELRPVLQTLGDWVSRWLM--ADPTPAECDPELLTL 115 +I+ + G Y + AG EL + L W +R M ADP E L Sbjct 70 GVIQRRLDLDQPGSAVVYELSDAGRELAEAMIPLAMWGARHQMSHADPCAEAFRAEWLLA 129 Query 116 WISRRVNTEALPGRRVVVEFRYHGERPLWAWLVLEPGDISVCLHDPC-LPVDLTVRGHPR 174 +++ + G V EF A L + G +SV PC P D+TVR R Sbjct 130 FLAADLRGGIPEGLASVYEFHVDDST---ACLQIRDGRVSV-RPGPCATPADVTVRATAR 185 Query 175 DLYRVYSGRSTLAAEISAERIELDGLPA 202 + V + L ++ RIE+ G PA Sbjct 186 AIAAVVGQKDRLEDAVAEGRIEVTGDPA 213 >gi|333917861|ref|YP_004491442.1| MarR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333480082|gb|AEF38642.1| Transcriptional regulator, MarR family [Amycolicicoccus subflavus DQS3-9A1] Length=235 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 53/122 (44%), Positives = 78/122 (64%), Gaps = 8/122 (6%) Query 1 VQPYGQYCPVARAAELLGDRWTLLIVRELLF-GPLRFTEIERGLPGISRSVLAQRLRRLQ 59 ++ Y QYC VA+A +++GDRWTLLIVRELL G RFT+++RGLPGI+ ++L++RL+ L+ Sbjct 1 MRSYRQYCAVAKALDVVGDRWTLLIVRELLLRGGCRFTDLQRGLPGIATNLLSERLKELE 60 Query 60 HDRIIE---AVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTLW 116 I+ A P Y T AG EL PV++ L W +R++ P PA D + W Sbjct 61 RHEIVRREAAAPPVATTLYHLTDAGRELEPVVRALLRWGARFM---PNPA-GDEAFRSHW 116 Query 117 IS 118 ++ Sbjct 117 LT 118 >gi|262200639|ref|YP_003271847.1| HxlR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083986|gb|ACY19954.1| helix-turn-helix HxlR type [Gordonia bronchialis DSM 43247] Length=212 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/114 (44%), Positives = 71/114 (63%), Gaps = 0/114 (0%) Query 2 QPYGQYCPVARAAELLGDRWTLLIVRELLFGPLRFTEIERGLPGISRSVLAQRLRRLQHD 61 + YGQ+C +ARA +++GDRW LLIVRELL GPLR+ E++ LPG++ ++LA+RLR ++ Sbjct 12 RSYGQFCGLARALDVVGDRWNLLIVRELLPGPLRYGELKASLPGVASNLLAERLRTMEET 71 Query 62 RIIEAVPEHTGGGYRFTVAGEELRPVLQTLGDWVSRWLMADPTPAECDPELLTL 115 ++E TG Y T G EL+ ++ LG W L A E P LTL Sbjct 72 GVVERALGDTGVVYGLTRWGTELKEPMEALGRWGVPLLAAGRGDDEFRPRWLTL 125 Lambda K H 0.324 0.140 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 319551017258 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40