BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1733c
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608871|ref|NP_216249.1| transmembrane protein [Mycobacteriu... 418 3e-115
gi|31792921|ref|NP_855414.1| transmembrane protein [Mycobacteriu... 416 1e-114
gi|339294687|gb|AEJ46798.1| transmembrane protein [Mycobacterium... 414 4e-114
gi|254231926|ref|ZP_04925253.1| hypothetical protein TBCG_01688 ... 413 8e-114
gi|306779738|ref|ZP_07418075.1| conserved membrane protein [Myco... 413 9e-114
gi|294996642|ref|ZP_06802333.1| hypothetical protein Mtub2_19588... 410 8e-113
gi|340626738|ref|YP_004745190.1| hypothetical protein MCAN_17441... 409 1e-112
gi|15841196|ref|NP_336233.1| hypothetical protein MT1774 [Mycoba... 390 9e-107
gi|308401441|ref|ZP_07493432.2| conserved membrane protein [Myco... 362 2e-98
gi|308377809|ref|ZP_07480494.2| conserved membrane protein [Myco... 357 5e-97
gi|289757842|ref|ZP_06517220.1| putative transmembrane protein [... 189 2e-46
gi|254822182|ref|ZP_05227183.1| transmembrane protein [Mycobacte... 149 3e-34
gi|118471142|ref|YP_885521.1| transmembrane protein [Mycobacteri... 132 2e-29
gi|254774712|ref|ZP_05216228.1| transmembrane protein [Mycobacte... 130 2e-28
gi|296164630|ref|ZP_06847197.1| transmembrane protein [Mycobacte... 121 7e-26
gi|108800369|ref|YP_640566.1| hypothetical protein Mmcs_3403 [My... 117 8e-25
gi|118470859|ref|YP_886110.1| transmembrane protein [Mycobacteri... 114 7e-24
gi|118466849|ref|YP_881205.1| transmembrane protein [Mycobacteri... 111 8e-23
gi|336458147|gb|EGO37130.1| hypothetical protein MAPs_16050 [Myc... 108 5e-22
gi|296169062|ref|ZP_06850722.1| conserved hypothetical protein [... 108 6e-22
gi|183983484|ref|YP_001851775.1| hypothetical protein MMAR_3501 ... 106 2e-21
gi|240171845|ref|ZP_04750504.1| hypothetical protein MkanA1_2119... 104 1e-20
gi|240170742|ref|ZP_04749401.1| transmembrane protein [Mycobacte... 98.6 6e-19
gi|118473428|ref|YP_888235.1| transmembrane protein [Mycobacteri... 97.4 1e-18
gi|300784432|ref|YP_003764723.1| transmembrane protein [Amycolat... 97.4 1e-18
gi|118472480|ref|YP_890884.1| transmembrane protein [Mycobacteri... 93.6 2e-17
gi|145225574|ref|YP_001136252.1| hypothetical protein Mflv_4998 ... 86.7 2e-15
gi|120402390|ref|YP_952219.1| putative transmembrane protein [My... 86.7 2e-15
gi|226363187|ref|YP_002780969.1| hypothetical protein ROP_37770 ... 84.7 7e-15
gi|111017068|ref|YP_700040.1| hypothetical protein RHA1_ro00046 ... 84.7 9e-15
gi|226363306|ref|YP_002781088.1| hypothetical protein ROP_38960 ... 82.4 4e-14
gi|111020998|ref|YP_703970.1| hypothetical protein RHA1_ro04015 ... 82.0 5e-14
gi|111020900|ref|YP_703872.1| hypothetical protein RHA1_ro03914 ... 82.0 5e-14
gi|111025107|ref|YP_707527.1| hypothetical protein RHA1_ro08325 ... 72.0 6e-11
gi|258652215|ref|YP_003201371.1| hypothetical protein Namu_1997 ... 65.5 5e-09
gi|302529611|ref|ZP_07281953.1| predicted protein [Streptomyces ... 64.3 1e-08
gi|118468561|ref|YP_884588.1| transmembrane protein [Mycobacteri... 63.9 1e-08
gi|226303656|ref|YP_002763614.1| hypothetical protein RER_01670 ... 63.5 2e-08
gi|229492810|ref|ZP_04386608.1| conserved hypothetical protein [... 61.2 9e-08
gi|111025122|ref|YP_707542.1| transmembrane protein [Rhodococcus... 61.2 1e-07
gi|256376541|ref|YP_003100201.1| hypothetical protein Amir_2415 ... 60.8 1e-07
gi|291300929|ref|YP_003512207.1| hypothetical protein Snas_3450 ... 60.1 2e-07
gi|111017047|ref|YP_700019.1| hypothetical protein RHA1_ro00025 ... 58.9 5e-07
gi|296270086|ref|YP_003652718.1| hypothetical protein Tbis_2114 ... 58.9 5e-07
gi|284991228|ref|YP_003409782.1| proline rich protein membrane p... 57.4 1e-06
gi|29827971|ref|NP_822605.1| hypothetical protein SAV_1430 [Stre... 57.0 2e-06
gi|291455559|ref|ZP_06594949.1| conserved hypothetical protein [... 56.6 2e-06
gi|294628027|ref|ZP_06706587.1| membrane protein [Streptomyces s... 55.5 6e-06
gi|226306902|ref|YP_002766862.1| hypothetical protein RER_34150 ... 55.1 7e-06
gi|256376539|ref|YP_003100199.1| hypothetical protein Amir_2413 ... 55.1 7e-06
>gi|15608871|ref|NP_216249.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|148661531|ref|YP_001283054.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
gi|167968654|ref|ZP_02550931.1| putative conserved transmembrane protein [Mycobacterium tuberculosis
H37Ra]
9 more sequence titles
Length=210
Score = 418 bits (1074), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|31792921|ref|NP_855414.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121637641|ref|YP_977864.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148822939|ref|YP_001287693.1| transmembrane protein [Mycobacterium tuberculosis F11]
40 more sequence titles
Length=210
Score = 416 bits (1068), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 209/210 (99%), Positives = 209/210 (99%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|339294687|gb|AEJ46798.1| transmembrane protein [Mycobacterium tuberculosis CCDC5079]
Length=210
Score = 414 bits (1064), Expect = 4e-114, Method: Compositional matrix adjust.
Identities = 208/210 (99%), Positives = 208/210 (99%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPP RAIADAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPTRAIADAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|254231926|ref|ZP_04925253.1| hypothetical protein TBCG_01688 [Mycobacterium tuberculosis C]
gi|124600985|gb|EAY59995.1| hypothetical protein TBCG_01688 [Mycobacterium tuberculosis C]
gi|323719826|gb|EGB28940.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=210
Score = 413 bits (1061), Expect = 8e-114, Method: Compositional matrix adjust.
Identities = 208/210 (99%), Positives = 208/210 (99%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILRVFSRN LVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNSLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|306779738|ref|ZP_07418075.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306784472|ref|ZP_07422794.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306788838|ref|ZP_07427160.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
11 more sequence titles
Length=210
Score = 413 bits (1061), Expect = 9e-114, Method: Compositional matrix adjust.
Identities = 208/210 (99%), Positives = 208/210 (99%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILRVFSRN LVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNALVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|294996642|ref|ZP_06802333.1| hypothetical protein Mtub2_19588 [Mycobacterium tuberculosis
210]
Length=210
Score = 410 bits (1053), Expect = 8e-113, Method: Compositional matrix adjust.
Identities = 207/210 (99%), Positives = 207/210 (99%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILR SRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRGVSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|340626738|ref|YP_004745190.1| hypothetical protein MCAN_17441 [Mycobacterium canettii CIPT
140010059]
gi|340004928|emb|CCC44076.1| putative conserved transmembrane protein [Mycobacterium canettii
CIPT 140010059]
Length=210
Score = 409 bits (1052), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 206/210 (99%), Positives = 206/210 (99%), Gaps = 0/210 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCR ILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRPILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVN 120
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGVIDSN TATSAPPRTKITVPARWVVN
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGVIDSNATATSAPPRTKITVPARWVVN 120
Query 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAG 180
GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAI DAALAALGLWLSVAAVAG
Sbjct 121 GIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAITDAALAALGLWLSVAAVAG 180
Query 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
ALLALTRAILIRVRNASWQHDIDSLFCTQR
Sbjct 181 ALLALTRAILIRVRNASWQHDIDSLFCTQR 210
>gi|15841196|ref|NP_336233.1| hypothetical protein MT1774 [Mycobacterium tuberculosis CDC1551]
gi|13881418|gb|AAK46047.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=198
Score = 390 bits (1001), Expect = 9e-107, Method: Compositional matrix adjust.
Identities = 196/198 (99%), Positives = 196/198 (99%), Gaps = 0/198 (0%)
Query 13 MITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRS 72
MITFRLRLPCRTILRVFSRN LVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAV DSRS
Sbjct 1 MITFRLRLPCRTILRVFSRNSLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVHDSRS 60
Query 73 HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKP 132
HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKP
Sbjct 61 HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKP 120
Query 133 GTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIR 192
GTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIR
Sbjct 121 GTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIR 180
Query 193 VRNASWQHDIDSLFCTQR 210
VRNASWQHDIDSLFCTQR
Sbjct 181 VRNASWQHDIDSLFCTQR 198
>gi|308401441|ref|ZP_07493432.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|308366067|gb|EFP54918.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=183
Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/183 (99%), Positives = 183/183 (100%), Gaps = 0/183 (0%)
Query 28 VFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATA 87
+FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATA
Sbjct 1 MFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATA 60
Query 88 TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA 147
TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA
Sbjct 61 TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA 120
Query 148 GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSLFC 207
GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSLFC
Sbjct 121 GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSLFC 180
Query 208 TQR 210
TQR
Sbjct 181 TQR 183
>gi|308377809|ref|ZP_07480494.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308354572|gb|EFP43423.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
Length=183
Score = 357 bits (917), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/183 (99%), Positives = 181/183 (99%), Gaps = 0/183 (0%)
Query 28 VFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATA 87
+FSRN LVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAV DSRSHVYAHQAQTRHPATA
Sbjct 1 MFSRNALVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVHDSRSHVYAHQAQTRHPATA 60
Query 88 TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA 147
TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA
Sbjct 61 TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA 120
Query 148 GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSLFC 207
GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSLFC
Sbjct 121 GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSLFC 180
Query 208 TQR 210
TQR
Sbjct 181 TQR 183
>gi|289757842|ref|ZP_06517220.1| putative transmembrane protein [Mycobacterium tuberculosis T85]
gi|289713406|gb|EFD77418.1| putative transmembrane protein [Mycobacterium tuberculosis T85]
Length=95
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/95 (99%), Positives = 94/95 (99%), Gaps = 0/95 (0%)
Query 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA
Sbjct 1 MIATTRDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFA 60
Query 61 AAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEGV 95
AAAGTAV DSRSHVYAHQAQTRHPATATVIDHEGV
Sbjct 61 AAAGTAVHDSRSHVYAHQAQTRHPATATVIDHEGV 95
>gi|254822182|ref|ZP_05227183.1| transmembrane protein [Mycobacterium intracellulare ATCC 13950]
Length=208
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/198 (46%), Positives = 119/198 (61%), Gaps = 11/198 (5%)
Query 9 EGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQ 68
+GA M +F + LP R R+F RNPL+R +DRLEA++++LA+ +SLL IP AA GTAV
Sbjct 17 DGAAMESFTVPLPRRLSSRLFGRNPLIRASDRLEALMLVLAIAISLLAIPIGAAVGTAVH 76
Query 69 DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEV 128
+S S V+A QAQ R TAT V DS+ P +TVPARW V+GIE +G+V
Sbjct 77 ESSSRVHAEQAQGRRQVTAT-----SVGDSHPRRDLESP--TVTVPARWSVDGIEHTGDV 129
Query 129 NAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALA-ALGLWLSVAAVAGALLALTR 187
A K+GD + IWVD+ G V PP R DA +A A+ W +++ +A L + R
Sbjct 130 AAPLNMKTGDAIEIWVDAKGAPV---RPPVRTAVDAGVAFAVATWSTMSLLAAGLFGVVR 186
Query 188 AILIRVRNASWQHDIDSL 205
L R R A WQ D DSL
Sbjct 187 VALDRSRYARWQRDFDSL 204
>gi|118471142|ref|YP_885521.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118172429|gb|ABK73325.1| probable conserved transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=198
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/201 (44%), Positives = 115/201 (58%), Gaps = 14/201 (6%)
Query 13 MITFRLRLP-CRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSR 71
M TF L +P +LR++ R+PLVR TDR+EA ++L V V L+T P AAA GT V D+R
Sbjct 1 MDTFTLGMPRWPFLLRLWGRHPLVRPTDRIEAFAVVLTVVVMLVTAPIAAAIGTTVYDAR 60
Query 72 SHVYAHQAQTRHPATATVIDH---EGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEV 128
+YA QA TR TATVID + V+ +NT +PARW V G+E +G V
Sbjct 61 RTMYAEQADTRQVVTATVIDDDAAQAVLRTNTA----------LMPARWSVAGVEHTGAV 110
Query 129 NAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRA 188
+ K+GD V IWVD G+ P P A +A AL LWL V + G LL RA
Sbjct 111 DVASTAKTGDVVEIWVDDRGERTSAPTPVGLAAVEAVTGALVLWLVVGGIQGGLLMAIRA 170
Query 189 ILIRVRNASWQHDIDSLFCTQ 209
+ RVR+A+WQ ++D L T
Sbjct 171 LCDRVRSAAWQRELDHLAGTD 191
>gi|254774712|ref|ZP_05216228.1| transmembrane protein [Mycobacterium avium subsp. avium ATCC
25291]
Length=186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/194 (44%), Positives = 110/194 (57%), Gaps = 13/194 (6%)
Query 13 MITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRS 72
M +F + LP R+F NPL+R +DR+EA+V++LAV +SLL +P AA GTAV +S S
Sbjct 1 MESFTVPLPRGLSSRLFGHNPLIRASDRVEALVLVLAVAISLLGVPIGAAVGTAVHESSS 60
Query 73 HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKP 132
V+ QA R TAT I DS++ P +TVPARW V+GIE +G+V+A
Sbjct 61 RVHVEQA--RRQVTATSIG-----DSHSRRDLESP--TVTVPARWSVDGIEHTGDVSAPL 111
Query 133 GTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALA-ALGLWLSVAAVAGALLALTRAILI 191
KSGD IWVD G V P R DA +A A+ W +V +A L + R L
Sbjct 112 NVKSGDAFEIWVDGKGAPVR---PAVRTAVDAGVAFAVATWSTVRLLAAGLFGVVRVALD 168
Query 192 RVRNASWQHDIDSL 205
R R A WQ D DSL
Sbjct 169 RSRYARWQRDFDSL 182
>gi|296164630|ref|ZP_06847197.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900049|gb|EFG79488.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=217
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/202 (47%), Positives = 114/202 (57%), Gaps = 13/202 (6%)
Query 6 RDREGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGT 65
R +GA + TF + LP + R+FSRNPLVR +DRLEAV+++LAV VSLLT+P AAA GT
Sbjct 23 RRGDGAALETFTVPLPRTLLARLFSRNPLVRASDRLEAVLLVLAVAVSLLTVPIAAAVGT 82
Query 66 AVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERS 125
AV +SRS YA Q R P ATV+ G TT T T PARW G ER+
Sbjct 83 AVHESRSGAYAEWVQARQPVNATVV---GAAHPRTTLGG----TAATAPARWEFAGAERT 135
Query 126 GEVNAKPGTKSGDRVGIWVDSAGQLVDEP--APPARAIADAALAALGLWLSVAAVAGALL 183
G+V A K GDRV IWVD G V P +P A+A AA +W +V+ A
Sbjct 136 GDVAAPLTAKVGDRVEIWVDRRGAPVSRPVVSPRDEAVAIAA----AIWCAVSLSVAASF 191
Query 184 ALTRAILIRVRNASWQHDIDSL 205
A R L R A WQH+ D L
Sbjct 192 AGVRHALDSARGARWQHEFDRL 213
>gi|108800369|ref|YP_640566.1| hypothetical protein Mmcs_3403 [Mycobacterium sp. MCS]
gi|119869498|ref|YP_939450.1| hypothetical protein Mkms_3466 [Mycobacterium sp. KMS]
gi|126435992|ref|YP_001071683.1| hypothetical protein Mjls_3414 [Mycobacterium sp. JLS]
gi|108770788|gb|ABG09510.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
gi|119695587|gb|ABL92660.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
gi|126235792|gb|ABN99192.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=218
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/203 (42%), Positives = 109/203 (54%), Gaps = 8/203 (3%)
Query 4 TTRDREGATMITFRLRLPCRTIL-RVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAA 62
T+R R M F +R+P +L R+F R PLVR TDR EA+V+ LA+ V LL +P AAA
Sbjct 12 TSRRRRDDAMEPFEIRVPRWPLLVRLFDRGPLVRPTDRFEALVVTLAIVVVLLAVPVAAA 71
Query 63 AGTAVQDSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGI 122
GTA+ DSRSH Y Q TR TA V D T +TVP W
Sbjct 72 IGTAIHDSRSHFYNEQNATRQHVTAVVTDVPEYRSFTRTGM-------MTVPVEWWEGDT 124
Query 123 ERSGEVNAKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGAL 182
+ V A GD V +W+D+ G V PAP +RA +A A +WLSVAA A L
Sbjct 125 RHTETVQAHGSVDPGDAVDLWIDADGARVLAPAPASRAAVEAVAGAAAIWLSVAAGAAIL 184
Query 183 LALTRAILIRVRNASWQHDIDSL 205
L + R+R+A+WQHD+D+L
Sbjct 185 STLVQMTCDRIRSAAWQHDLDTL 207
>gi|118470859|ref|YP_886110.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118172146|gb|ABK73042.1| probable conserved transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=195
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/182 (39%), Positives = 99/182 (55%), Gaps = 8/182 (4%)
Query 25 ILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHP 84
+LR +NPLVR TDR+EA+ ++LA+ VS+L IP+ + G V + QAQTRH
Sbjct 11 VLRALGKNPLVRRTDRIEALAVVLAIVVSVLVIPYVISFGDEVHADQLREATVQAQTRHQ 70
Query 85 ATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWV 144
ATV++ DS + A R V +W VNG ER+G + + GD+V IWV
Sbjct 71 VDATVVN-----DSQSNVEGANVRI---VGIKWNVNGEERTGALRPTGKVQPGDKVQIWV 122
Query 145 DSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDS 204
D+ GQ V P P A A A +A+ LW ++ + G L ALTR +L R +W ++
Sbjct 123 DAKGQRVPPPISPTTARAYATGSAVALWAAITVLCGLLAALTRKVLDHQRAHAWSDELHL 182
Query 205 LF 206
L
Sbjct 183 LL 184
>gi|118466849|ref|YP_881205.1| transmembrane protein [Mycobacterium avium 104]
gi|118168136|gb|ABK69033.1| probable conserved transmembrane protein [Mycobacterium avium
104]
Length=210
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/196 (45%), Positives = 111/196 (57%), Gaps = 11/196 (5%)
Query 11 ATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDS 70
A + T + LP + +F RNPLVR +DR++A++ +LAV VSL +P AA GTAV +S
Sbjct 21 AELETVHIPLPRILLAHLFGRNPLVRVSDRVQALIFVLAVAVSLAAVPVAATIGTAVHES 80
Query 71 RSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNA 130
RS VYA Q+QT TAT + DS+ P + VPARW G E +G+V A
Sbjct 81 RSRVYAEQSQTWRTVTATAVG-----DSHPRRDLDSP--TVRVPARWQYAGAEHAGDVIA 133
Query 131 KPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALA-ALGLWLSVAAVAGALLALTRAI 189
K+GDRV IWVD G V PP R D A+A A+ W +V+ A AL A RA
Sbjct 134 PLNVKAGDRVEIWVDDTGSPV---TPPDRTALDEAVAFAVVSWCAVSLPAAALFAAARAA 190
Query 190 LIRVRNASWQHDIDSL 205
L R R A+WQ D D L
Sbjct 191 LDRRRYAAWQRDFDRL 206
>gi|336458147|gb|EGO37130.1| hypothetical protein MAPs_16050 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=210
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/196 (44%), Positives = 111/196 (57%), Gaps = 11/196 (5%)
Query 11 ATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDS 70
A + T + LP + +F RNPLVR +DR++A++++LAVTVSL +P AA GTAV +S
Sbjct 21 AELETVHIPLPRILLAHLFGRNPLVRVSDRVQALILVLAVTVSLAAVPVAATIGTAVHES 80
Query 71 RSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNA 130
RS VYA Q+QT TAT + DS+ P + VPARW G E + +V A
Sbjct 81 RSRVYAEQSQTWRTVTATAVG-----DSHPRRDLDSP--TVRVPARWQYAGAEHASDVIA 133
Query 131 KPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALA-ALGLWLSVAAVAGALLALTRAI 189
K+GD V IWVD G V PP R D A+A A+ W +V+ A AL A RA
Sbjct 134 PLNVKAGDTVEIWVDDTGSPV---TPPDRTALDEAVAFAVVSWCAVSLPAAALFAAARAA 190
Query 190 LIRVRNASWQHDIDSL 205
L R R A+WQ D D L
Sbjct 191 LDRRRYAAWQRDFDRL 206
>gi|296169062|ref|ZP_06850722.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896253|gb|EFG75914.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=186
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 98/185 (53%), Gaps = 13/185 (7%)
Query 22 CRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQT 81
C I RVF RNPL+R DR+EA V+L+A+ VSL+ +P A G A +R VY H+A
Sbjct 10 CWRIARVFGRNPLLRRADRIEAAVILVALAVSLIAVPVAGLVGAATYSARDRVYTHEAHQ 69
Query 82 RHPATATVIDHEGVIDSNTTATSAPPRTKIT-VPARWVVNGIERSGEVNAKPGTKSGDRV 140
RHP ATVID + P +T V A+W ERSG + K+G V
Sbjct 70 RHPLMATVID------------ARPEDLGVTVVQAKWPGPRGERSGTLETAEHAKAGGTV 117
Query 141 GIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQH 200
IWVD+ G V P P A A+A A+ L A AL+A+ R+ L R+R+ W+
Sbjct 118 EIWVDAHGNPVVPPTPTWLAAAEAVGVAVVTALGAAMAMSALVAVVRSRLDRIRDELWER 177
Query 201 DIDSL 205
DI+ L
Sbjct 178 DIEFL 182
>gi|183983484|ref|YP_001851775.1| hypothetical protein MMAR_3501 [Mycobacterium marinum M]
gi|183176810|gb|ACC41920.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=193
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/194 (39%), Positives = 101/194 (53%), Gaps = 12/194 (6%)
Query 13 MITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRS 72
M TF+L I R+ RNPL+R DR+EA+V+L+A+ SL+ IP AA G V ++R+
Sbjct 1 METFKLDPRDWWIARIAGRNPLLRRADRVEALVVLIALAASLVAIPVAAVLGAVVFNARA 60
Query 73 HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTK-ITVPARWVVNGIERSGEVNAK 131
YA QAQ RHP TA V T T+ P T+ + V RW + SG +
Sbjct 61 DQYAEQAQVRHPVTAEV-----------TGTTRNPNTEAVVVQVRWPGAAAQHSGSLQRT 109
Query 132 PGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILI 191
K+G R+ +WVD LV P P A DA + + LS+ V AL+A R L
Sbjct 110 SPVKAGQRIQVWVDRDDNLVRPPTPTWHAAVDAVGVTMVILLSMCVVLAALVAAVRTQLD 169
Query 192 RVRNASWQHDIDSL 205
RVR+A W ++ L
Sbjct 170 RVRDAQWDRELSCL 183
>gi|240171845|ref|ZP_04750504.1| hypothetical protein MkanA1_21195 [Mycobacterium kansasii ATCC
12478]
Length=193
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/193 (40%), Positives = 100/193 (52%), Gaps = 10/193 (5%)
Query 13 MITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRS 72
M TF + C + R+ RNPL+R TDRLEA+++L+A+ SL IP A G V D+R
Sbjct 1 METFTIDPRCWRLARLVGRNPLLRRTDRLEALLLLVALIASLFLIPATAVVGAEVFDARD 60
Query 73 HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKP 132
YA QAQ RHP TATV T AT P I V RW+ ER+G
Sbjct 61 RQYAAQAQARHPVTATV----------TGATHNPNSEGIVVHVRWLAASDERTGSFRHSA 110
Query 133 GTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIR 192
G RV IWVD G LV P P A DA + ++ + L+ A ++A R+ L R
Sbjct 111 PLNVGQRVEIWVDRDGNLVRPPTPRWHAGVDAVVTSVLIVLTCAVAMALVVASVRSRLDR 170
Query 193 VRNASWQHDIDSL 205
R+A+W+ DI L
Sbjct 171 ARDAAWERDIRCL 183
>gi|240170742|ref|ZP_04749401.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=212
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/177 (43%), Positives = 93/177 (53%), Gaps = 14/177 (7%)
Query 9 EGATMITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQ 68
+ A+M LR P ++ SR P RG L A M +AV V L +P A A GT
Sbjct 18 DDASMDINTLRRP-HPLVAWLSRMPTTRGFQMLLA--MWVAVVV-LAGLPIAVALGTKEH 73
Query 69 DSRSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEV 128
+SRS YA QAQTR TA V D A P+T ++VPARWVV G+E +G V
Sbjct 74 ESRSRFYAEQAQTRQSVTAVVTG-----DKAGHQELADPQT-VSVPARWVVGGVEHAGPV 127
Query 129 NAKPGTKSGDRVGIWVDSAGQLVDEPAPPAR-AIADAALAALGLWLSVAAVAGALLA 184
+A G K+GD V IWVD G PP R A+ DA A L WL ++AV LLA
Sbjct 128 DAPRGVKAGDSVDIWVDENGY---HAGPPLRTALDDAVAAGLSAWLMISAVTAVLLA 181
>gi|118473428|ref|YP_888235.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118174715|gb|ABK75611.1| probable conserved transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=191
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/176 (35%), Positives = 86/176 (49%), Gaps = 6/176 (3%)
Query 28 VFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATA 87
V+SRNPLVR DR+E + L AV + +L IP A+ G +V R VYA QA+ A
Sbjct 11 VWSRNPLVRRRDRIEGALRLAAVVLCVLAIPLTASIGISVYHDREQVYAAQARDARQVIA 70
Query 88 TVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSA 147
+ ++ NT + P R T W V+G + G + GD IWV+ +
Sbjct 71 VAAERGALV--NTEGHAQPYRADAT----WTVDGQQHRGRLVWADFPNVGDEQTIWVNPS 124
Query 148 GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDID 203
G+++D P RA+ DA L AL W+ AA G L L R R A W+ + +
Sbjct 125 GKVIDPPHGEGRAVGDAVLTALWAWILFAAGVGGGLILLHRRFDRARYAEWEREFE 180
>gi|300784432|ref|YP_003764723.1| transmembrane protein [Amycolatopsis mediterranei U32]
gi|299793946|gb|ADJ44321.1| putative transmembrane protein [Amycolatopsis mediterranei U32]
gi|340525853|gb|AEK41058.1| transmembrane protein [Amycolatopsis mediterranei S699]
Length=199
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/170 (39%), Positives = 91/170 (54%), Gaps = 2/170 (1%)
Query 31 RNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATVI 90
RNPL R DR+EA ++LLAV +LL IPFAAA G+ +++ A + TRHPATA +
Sbjct 19 RNPLARAGDRVEAFLLLLAVAGALLAIPFAAAFGSETYGAQTARAAEERTTRHPATAVSL 78
Query 91 DHEGVIDSNTTATSAPPRTKITVPARWV-VNGIERSGEVNAKPGTKSGDRVGIWVDSAGQ 149
+T AP + TVPA W G +G+V A PG+ +G RV +W+D G+
Sbjct 79 AAASSPSYSTDGAGAPA-AQTTVPAAWFDARGTRHTGDVLADPGSPAGTRVAVWLDQHGE 137
Query 150 LVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQ 199
L EP + + AD AA+ LW + L TR +L R A+W
Sbjct 138 LTGEPLSASTSAADGVFAAILLWAVITGALAGLYGATRFVLARFHAAAWD 187
>gi|118472480|ref|YP_890884.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118173767|gb|ABK74663.1| probable conserved transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=204
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/195 (40%), Positives = 105/195 (54%), Gaps = 8/195 (4%)
Query 13 MITFRLRLP-CRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSR 71
+ TF LR+P ++R+ R+PLVR DR+EA++ L V V++L +P A GTAV D+R
Sbjct 7 LTTFALRMPRWPALVRLRGRDPLVRAVDRVEALIFCLVVVVAVLAVPVVGAIGTAVHDAR 66
Query 72 SHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAK 131
S A A +R P ATV+D +T A A T TV RW+V+G E +G V A
Sbjct 67 SQHNAQAAASRTPVEATVVD------ISTDAGDAFANTH-TVTGRWLVDGTEHTGVVPAS 119
Query 132 PGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILI 191
P GD V IWVD +G P P + A ADA ++ + +A +L LTR
Sbjct 120 PNVSVGDTVQIWVDRSGAWAPAPPPASSAAADAITLSVLILFGLAGATLTVLVLTRKSCD 179
Query 192 RVRNASWQHDIDSLF 206
RVR WQH +D+
Sbjct 180 RVRFNRWQHGLDAFI 194
>gi|145225574|ref|YP_001136252.1| hypothetical protein Mflv_4998 [Mycobacterium gilvum PYR-GCK]
gi|315445927|ref|YP_004078806.1| hypothetical protein Mspyr1_44160 [Mycobacterium sp. Spyr1]
gi|145218060|gb|ABP47464.1| putative conserved transmembrane protein [Mycobacterium gilvum
PYR-GCK]
gi|315264230|gb|ADU00972.1| hypothetical protein Mspyr1_44160 [Mycobacterium sp. Spyr1]
Length=195
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/193 (36%), Positives = 93/193 (49%), Gaps = 9/193 (4%)
Query 13 MITFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRS 72
M TF L + R+ SR+PLVR TDR+EA VM L V + +P A A GTA D +
Sbjct 1 MQTFTLGFGVW-LRRLASRSPLVRSTDRVEAAVMTLIVVAGVCAVPIAGAVGTAEYDRLT 59
Query 73 HVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKP 132
+ A + T ATV V DS T S P T W V + R+ E+
Sbjct 60 NSLAAERLTHREVDATV-----VRDSRT--VSEPYETTYLTEIGWNVGSVARTAEITTTR 112
Query 133 GTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIR 192
+GDR+ IWVD +G LV + A A + ALG+W +V + A L R L
Sbjct 113 -KSAGDRLTIWVDDSGDLVRKGLTDGDAATQAVVGALGVWFAVTGLGVATWMLLRLRLDH 171
Query 193 VRNASWQHDIDSL 205
+R+ +W ++D L
Sbjct 172 LRSQNWDRELDDL 184
>gi|120402390|ref|YP_952219.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
gi|119955208|gb|ABM12213.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=196
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/191 (35%), Positives = 93/191 (49%), Gaps = 11/191 (5%)
Query 15 TFRLRLPCRTILRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHV 74
TF R+ R R+ +R+P+VRGTDR+EA +LL V +S+LT+P A A GTA D +H
Sbjct 5 TFGTRVWMR---RLVARSPIVRGTDRIEAAGLLLVVALSILTVPIAGAVGTAEYDRLAHT 61
Query 75 YAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGT 134
+A Q +H AT + S++ P W G + E+ +
Sbjct 62 FAEQRLVKHEVDATAV-------SDSRGVPQPYEKPYVTEVSWNYAGTTHTAEIRTRQ-M 113
Query 135 KSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVR 194
+GDRV IWVD AG A A+A +AAL LW + A L R L R+R
Sbjct 114 SAGDRVRIWVDDAGNRTVMVPSDHDAAAEAVIAALALWSVASGTGLAGWLLLRMRLNRMR 173
Query 195 NASWQHDIDSL 205
+W ++D L
Sbjct 174 FQAWDRELDDL 184
>gi|226363187|ref|YP_002780969.1| hypothetical protein ROP_37770 [Rhodococcus opacus B4]
gi|226241676|dbj|BAH52024.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=211
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/146 (35%), Positives = 75/146 (52%), Gaps = 1/146 (0%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
+SRNPL+RG DRL + ++L+ V LL IP AAA GT + TRH AT
Sbjct 27 WSRNPLMRGCDRLRSAMVLIGVVFVLLMIPLAAAVGTETYSRLDQQTQAELATRHSTPAT 86
Query 89 VIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAG 148
+++ + S A SA P+ + +W VNG + +V G K+G V +W+D G
Sbjct 87 LVE-DSRTGSAGEALSASPQYQAHARVQWSVNGQTHTADVPTAAGAKAGQTVTVWLDPNG 145
Query 149 QLVDEPAPPARAIADAALAALGLWLS 174
LV P ++ A A A G+W++
Sbjct 146 DLVAAPETGSQNAATAVSVACGIWVT 171
>gi|111017068|ref|YP_700040.1| hypothetical protein RHA1_ro00046 [Rhodococcus jostii RHA1]
gi|110816598|gb|ABG91882.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=200
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/179 (37%), Positives = 94/179 (53%), Gaps = 4/179 (2%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
+SRNPL+R TDR ++VV + +TV L+ +PFAAA GT + + QTRH +A
Sbjct 15 WSRNPLMRATDRCDSVVAAVLITVVLIVVPFAAAFGTVTYTGLAERSHTELQTRHAQSAV 74
Query 89 VIDH-EGVIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVNAKPGTKSGDRVGIWVDS 146
++D V+ ++ A S P T+ A+W +G RS V +PGT GD V +WVD+
Sbjct 75 LVDDPRQVVVAD--ARSRSPETQDRGTAQWKAPDGTLRSTAVETRPGTHRGDTVTVWVDT 132
Query 147 AGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSL 205
G +V EP + A A AAL +W A A L + R I R R W + + L
Sbjct 133 NGNVVAEPRSGVQNAAIAVSAALSVWAGAAVGALLLYSGVRWISGRSRMRQWDREWNDL 191
>gi|226363306|ref|YP_002781088.1| hypothetical protein ROP_38960 [Rhodococcus opacus B4]
gi|226241795|dbj|BAH52143.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=197
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/172 (31%), Positives = 79/172 (46%), Gaps = 5/172 (2%)
Query 32 NPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATVI- 90
NPL+R +DR+E ++ L V ++ +P A G DS+ + Q TAT +
Sbjct 20 NPLLRRSDRIENMLTLAVVVLAFAMLPLAILVGARTIDSQLTLAEKQVADYRTVTATTVA 79
Query 91 DHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAGQL 150
D GV + + P T PA+W R ++ P T SG R IWV++ G L
Sbjct 80 DSTGV----SVTSDVAPSGVDTAPAKWTWGNETRHADITVDPATPSGTRQDIWVNADGNL 135
Query 151 VDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDI 202
EP + A +A L W +V +A + + RA L R R+A W D+
Sbjct 136 TTEPMSSSAARVAGVIAGLFTWFAVMMIALSGFLICRASLNRARDAQWDRDL 187
>gi|111020998|ref|YP_703970.1| hypothetical protein RHA1_ro04015 [Rhodococcus jostii RHA1]
gi|110820528|gb|ABG95812.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=197
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/172 (31%), Positives = 80/172 (47%), Gaps = 5/172 (2%)
Query 32 NPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQ-AQTRHPATATVI 90
NPL+R +DR+E ++ L V ++ +P A G DS+ + Q A R + T+
Sbjct 20 NPLLRRSDRIENMLTLAVVVLAFAMLPLAILVGARTIDSQLTLAEKQVADYRTVSATTLA 79
Query 91 DHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAGQL 150
D GV + + P T PA W R ++ P T SG + IWV++ G L
Sbjct 80 DSTGV----SVTSDVAPSGVDTAPAEWTWGNETRHADITVDPATPSGTKEDIWVNADGNL 135
Query 151 VDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDI 202
EP P+ A +A L W +V +A + + RA L R R+A W D+
Sbjct 136 TTEPMSPSAARIAGVIAGLFTWFAVMMIALSGFLVCRASLNRARDAQWDRDL 187
>gi|111020900|ref|YP_703872.1| hypothetical protein RHA1_ro03914 [Rhodococcus jostii RHA1]
gi|110820430|gb|ABG95714.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=201
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/159 (34%), Positives = 77/159 (49%), Gaps = 11/159 (6%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
+SRNPL+RG DRL + ++L+ V L+ IP AAA GT + T+HP AT
Sbjct 17 WSRNPLMRGCDRLRSAMVLIGVFFVLMMIPLAAAYGTETYSRLDQQTRAELATQHPTPAT 76
Query 89 VIDHEGVIDSNTTATSAP----PRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWV 144
++D DS T + P P+ + +W NG + +V + K+G V +W+
Sbjct 77 LVD-----DSRTGSAGEPLPASPQYQAHARVQWSANGQTHTADVPTESAAKAGQTVTVWL 131
Query 145 DSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALL 183
D G LV P ++ A A A G+W V A G L
Sbjct 132 DQNGDLVPAPETGSQNAATAVSVACGIW--VTATGGYCL 168
>gi|111025107|ref|YP_707527.1| hypothetical protein RHA1_ro08325 [Rhodococcus jostii RHA1]
gi|110824086|gb|ABG99369.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=202
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/176 (35%), Positives = 83/176 (48%), Gaps = 1/176 (0%)
Query 26 LRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPA 85
LR +SRN L+RG DR EAV +L+ V +PFAA+ GTA +R A +T
Sbjct 17 LRPWSRNRLMRGGDRAEAVALLVTAMVLAALVPFAASFGTATY-TRMQRQAEIVRTTVRP 75
Query 86 TATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVD 145
V+ + ++ A+ P + ARW G ER+G V G +G V + VD
Sbjct 76 VPAVLLGDAHPAAHIEASLQHPEPGDSALARWSAAGRERTGVVPTAAGATAGQTVTVLVD 135
Query 146 SAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHD 201
+AG L D + A A AA G+W A VA +L IL+R R W +
Sbjct 136 AAGNLADPGRSGTQNAAVAVTAACGVWALGAGVANLVLVGLHRILLRQRMRRWDRE 191
>gi|258652215|ref|YP_003201371.1| hypothetical protein Namu_1997 [Nakamurella multipartita DSM
44233]
gi|258555440|gb|ACV78382.1| hypothetical protein Namu_1997 [Nakamurella multipartita DSM
44233]
Length=200
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/181 (33%), Positives = 84/181 (47%), Gaps = 4/181 (2%)
Query 26 LRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPA 85
LRV+ NP+ RG DR EA++++ + LL++P A +A S A Q+ A
Sbjct 16 LRVWG-NPVARGADRAEALLIIGLTLIWLLSVPVIATVASAEWTSVDARVAAD-QSADVA 73
Query 86 TATVIDHEGVIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVNAKPGTKSGDRVGIWV 144
V+ + + A AP T T PA W+ +G G V G ++G RV IW+
Sbjct 74 VVAVLQADAPPLTAGDA-HAPSLTSPTAPAIWLGRDGQSAHGMVTVPAGARAGQRVTIWL 132
Query 145 DSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDS 204
D AG +VD P A LAALG W+ + V + R +L R R W+ +
Sbjct 133 DPAGAVVDRPMTTQVAAGLVVLAALGGWVGLGVVFAGVWWTARVVLNRHRAQLWEQGWTN 192
Query 205 L 205
L
Sbjct 193 L 193
>gi|302529611|ref|ZP_07281953.1| predicted protein [Streptomyces sp. AA4]
gi|302438506|gb|EFL10322.1| predicted protein [Streptomyces sp. AA4]
Length=210
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/174 (30%), Positives = 80/174 (46%), Gaps = 5/174 (2%)
Query 21 PCRTILRVFS--RNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQ 78
P + +LR RNPLVR +DR+E V+ + ++L+ IPFA G+ + + Q
Sbjct 16 PGKRLLRRLGAVRNPLVRRSDRIEGVLAGIVTLLALIAIPFAMMIGSEDIAAETAASDAQ 75
Query 79 AQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWV-VNGIERSGEVNAKPGTKS- 136
Q+RH TATV+ + + SAP V A W +G +R+G + + +
Sbjct 76 LQSRHQVTATVLT-TAAQPAASVGDSAPIANTARVNAVWKPPHGAQRTGVITVPASSATE 134
Query 137 GDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAIL 190
G IW+D +G+ P A A+ + L A WL V G R +L
Sbjct 135 GSTTDIWLDDSGKQTTAPLTHADAVTNGVLVAAFCWLCAVGVLGGAFWAARRVL 188
>gi|118468561|ref|YP_884588.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118169848|gb|ABK70744.1| probable conserved transmembrane protein, putative [Mycobacterium
smegmatis str. MC2 155]
Length=200
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (30%), Positives = 82/181 (46%), Gaps = 11/181 (6%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
F R PLVR DR++A ++ + ++++ + AA G A R+ A +A TRH AT
Sbjct 25 FVRTPLVRRADRIQAWALIAGLLLAVVALYPAALLGQAGYAGRAETIAAEAATRHAVDAT 84
Query 89 VIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAG 148
ID +SA VP +W N R+ E + K+GD V IW+D G
Sbjct 85 ATKGS-TIDPTVAESSAA--ASFRVPVKWETNRGVRTAETSVDHPVKAGDTVQIWLDEKG 141
Query 149 QLVDEPAPPARAIADAALAALG----LWLSVAAVAGALLALTRAILIRVRNASWQHDIDS 204
+ P + +DA +A +G WL++ + G A +L R RN W +
Sbjct 142 AVTSAP----KTESDARIAGIGAFVFAWLAMVGLIGGGYAALHVVLNRSRNREWDLGLRE 197
Query 205 L 205
L
Sbjct 198 L 198
>gi|226303656|ref|YP_002763614.1| hypothetical protein RER_01670 [Rhodococcus erythropolis PR4]
gi|226182771|dbj|BAH30875.1| hypothetical protein RER_01670 [Rhodococcus erythropolis PR4]
Length=198
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (30%), Positives = 79/174 (46%), Gaps = 6/174 (3%)
Query 31 RNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATVI 90
+P+VR +DR+E + + ++L +P A AG A S++ + A Q+ H +AT
Sbjct 20 HDPMVRRSDRIEGFMSFGLIIFAILLLPLAVWAGAATASSQNALIAKQSAELHSISATTT 79
Query 91 DHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAGQL 150
++T AP T A+W NG +G+V T G V I+V+ G
Sbjct 80 ADSTQTTASTADYIAP--TTEMASAQWNWNGEVHTGDVTVDSATPVGTEVPIYVNDHGD- 136
Query 151 VDEPAPPARAIADAALAALGL--WLSVAAVAGALLALTRAILIRVRNASWQHDI 202
AP ++ AD A G+ W SV ++ L R L R R+A W D+
Sbjct 137 -KTVAPITQSAADVAAVVTGVFTWFSVMSLLVIAFMLVRVFLDRSRSAQWDRDL 189
>gi|229492810|ref|ZP_04386608.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229320250|gb|EEN86073.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=176
Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/171 (30%), Positives = 78/171 (46%), Gaps = 6/171 (3%)
Query 34 LVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATVIDHE 93
+VR +DR+E + + ++L +P A AG A S++ + A Q+ H +AT
Sbjct 1 MVRRSDRIEGFMSFGLIIFAILLLPLAVWAGAATASSQNALIAKQSAELHSISATTTADS 60
Query 94 GVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAGQLVDE 153
++T AP T A+W NG +G+V T +G V I+V+ G
Sbjct 61 TQTTASTADYIAP--TTEMASAQWNWNGQVHTGDVTVDSATPAGTEVPIYVNDQGD--KT 116
Query 154 PAPPARAIADAALAALGL--WLSVAAVAGALLALTRAILIRVRNASWQHDI 202
AP ++ AD A G+ W SV ++ L R L R R+A W D+
Sbjct 117 VAPITQSAADVAAVVTGVFTWFSVMSLLVIAFMLVRVFLDRSRSAQWDRDL 167
>gi|111025122|ref|YP_707542.1| transmembrane protein [Rhodococcus jostii RHA1]
gi|110824101|gb|ABG99384.1| probable transmembrane protein [Rhodococcus jostii RHA1]
Length=216
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/183 (36%), Positives = 88/183 (49%), Gaps = 8/183 (4%)
Query 26 LRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPA 85
L+ SRNPL+RGTDR+EAVV+ L VTV LL +P AA GT S A P
Sbjct 34 LQPCSRNPLMRGTDRVEAVVVALVVTVVLLLVPVCAAVGTETFTSLQQQSRALAAQARPV 93
Query 86 TATVIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVD 145
A ++ G ID T + ARW V+G E +G+V A P ++GD V + V
Sbjct 94 PAVLLVDAG-IDPQAEPAVRIIDTGASSWARWTVDGREHTGQVPAPPQARAGDTVTVQVG 152
Query 146 SAGQLVDEPAPPARAIADAAL---AALGLWLSVAAVAGALLALTRAILIRVRNASWQHDI 202
G+L+D P +A L AA GLW +A G ++ +L+R R W +
Sbjct 153 PDGELLD----PRGGTENAVLAIAAACGLWAVLAGAGGLVIGGVHRMLVRSRLRVWDQAL 208
Query 203 DSL 205
Sbjct 209 KKF 211
>gi|256376541|ref|YP_003100201.1| hypothetical protein Amir_2415 [Actinosynnema mirum DSM 43827]
gi|255920844|gb|ACU36355.1| hypothetical protein Amir_2415 [Actinosynnema mirum DSM 43827]
Length=195
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/168 (39%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query 30 SRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATV 89
RN L R D LE VV+ +AV + LL +P AAA G+ V R+ A +HP TAT+
Sbjct 17 GRNSLARPGDLLERVVIAIAVLLVLLALPVAAAIGSEVHSMRADFIATDVAEKHPVTATL 76
Query 90 IDHEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAGQ 149
+ V+ T + R T PA G R+G V A G+ +G V IWVD G
Sbjct 77 TEDAPVVAGITGFENVEARAGWTTPA-----GATRTGLVGAPNGSPAGAEVEIWVDGLGG 131
Query 150 LVDEPAPPARAIADAALAALGLWLSVAAVAGALL---ALTRAILIRVR 194
LV P A+ ALGLW AA AGA++ + RA+L R+R
Sbjct 132 LVPPPPQSDGALIAGVTVALGLW---AAFAGAIVLSCMVLRALLNRLR 176
>gi|291300929|ref|YP_003512207.1| hypothetical protein Snas_3450 [Stackebrandtia nassauensis DSM
44728]
gi|290570149|gb|ADD43114.1| hypothetical protein Snas_3450 [Stackebrandtia nassauensis DSM
44728]
Length=192
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/190 (31%), Positives = 84/190 (45%), Gaps = 9/190 (4%)
Query 13 MITFRLRLPCRTILRVFS--RNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDS 70
MI +RL R+ S NPL R DR+EA+ + + +P G + +
Sbjct 1 MIRWRLVTDAARFARLLSLDDNPLRREVDRVEAMAARFVILIVAALLPVCVWLGMRIHED 60
Query 71 RSHVYAHQAQTRHPATATVIDHEGVIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVN 129
QA T + TA V+ H+ I +S R ARW +GIE SG V
Sbjct 61 GLATMESQALTHYQVTA-VLTHD--IQPAVATSSYQQRWG---EARWQTRHGIEDSGRVK 114
Query 130 AKPGTKSGDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAI 189
A G ++GD V IW+D QL + P +A A AA+ ++ V + + L R
Sbjct 115 APAGARAGDTVTIWLDGDDQLAEPPLTRQQASGRAVFAAVFAYIGVVELGFGVCWLVRRR 174
Query 190 LIRVRNASWQ 199
L R+R SW+
Sbjct 175 LDRIRMRSWE 184
>gi|111017047|ref|YP_700019.1| hypothetical protein RHA1_ro00025 [Rhodococcus jostii RHA1]
gi|110816577|gb|ABG91861.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=177
Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/173 (32%), Positives = 77/173 (45%), Gaps = 7/173 (4%)
Query 35 VRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATVIDHEG 94
+RG+ RLE+ V LL V V L +P AAA GTA + TR A +++
Sbjct 1 MRGSCRLESSVFLLVVAVVLSLVPLAAAFGTATRTRLDDQSRADRATRQQIAAVLLE--- 57
Query 95 VIDSNTTATSAPPRTKIT--VPARWVVNGIERSGEVNAKPGTKSGDRVGIWVDSAGQLVD 152
D+N P T T PARW V G +G V P K+G + IW+D AG++V
Sbjct 58 --DANVNLADTTPATGATGQAPARWAVAGTTHTGLVQTAPEAKTGQTISIWIDPAGKIVS 115
Query 153 EPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHDIDSL 205
P +A AAL LW + ++ R R R + W + +L
Sbjct 116 APKTGTENAFEAVGAALALWTMGTTICLTMMIGIRWAGTRYRMSQWDREWRNL 168
>gi|296270086|ref|YP_003652718.1| hypothetical protein Tbis_2114 [Thermobispora bispora DSM 43833]
gi|296092873|gb|ADG88825.1| hypothetical protein Tbis_2114 [Thermobispora bispora DSM 43833]
Length=202
Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/172 (32%), Positives = 71/172 (42%), Gaps = 6/172 (3%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
F RNPL R DR EA V LLAV L+ + G + V A Q + RH +AT
Sbjct 21 FDRNPLRRPCDRFEAAVRLLAVIGVLVAMVAGIMLGIREYEKGLRVEAEQQRARHEVSAT 80
Query 89 VIDHEGVIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVNAKPGTKSGDRVGIWVDSA 147
+I E V + + AP ARW NG + P ++GD V +WVD
Sbjct 81 LI--EDVAMARFSPAGAP---VGQAKARWTAPNGTVWQDTLTVAPTKRAGDTVRLWVDER 135
Query 148 GQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQ 199
G P + A G+ + AAV G L RAI R W+
Sbjct 136 GAPTTRPQDRDATVVRAVTVGGGIPVLAAAVLGTLTVSVRAINQRRARRMWE 187
>gi|284991228|ref|YP_003409782.1| proline rich protein membrane protein [Geodermatophilus obscurus
DSM 43160]
gi|284064473|gb|ADB75411.1| proline rich protein membrane protein [Geodermatophilus obscurus
DSM 43160]
Length=196
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 72/131 (55%), Gaps = 7/131 (5%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
PL R +D +E V ++ + V LL++P A A GTAV+ + QA+ R TA
Sbjct 16 LGSGPLKRTSDTVEFVSRVVVLLVVLLSVPVALAVGTAVRSDLAATARQQAEERTRVTA- 74
Query 89 VIDHEGVIDSNTTATSAPPRTKITVPARWVVNGIER-SGEVNAKPGTKSGDRVGIWVDSA 147
V+ + V ++ A PRT++ VPARW G E GEV A+P T++GD + +W +
Sbjct 75 VVTADAVAPAD-----ASPRTRVPVPARWTSPGGEPVGGEVPARPTTRAGDTLTLWTTAD 129
Query 148 GQLVDEPAPPA 158
G+ DEP PA
Sbjct 130 GRRSDEPMTPA 140
>gi|29827971|ref|NP_822605.1| hypothetical protein SAV_1430 [Streptomyces avermitilis MA-4680]
gi|29605072|dbj|BAC69140.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length=201
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/183 (31%), Positives = 79/183 (44%), Gaps = 12/183 (6%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIP-FAAAAGTAVQDSRSHVYAHQAQTRHPATA 87
+ NPL R TD +EA V L A+ + L+ +P A G QD+ Q + RH A
Sbjct 10 WRHNPLRRTTDLIEAWVTLTALLLILVAVPVIGAVVGAVAQDALQQSVRDQHRARHETVA 69
Query 88 TVID--HEGVIDSNTTATSAPPRTKITVPARWVVNGIERSGEVNAKPGT-KSGDRVGIWV 144
TV+ + G +D + +SA + A +G G V A T GD +W
Sbjct 70 TVVKKLNRGPLDPDPETSSARDAHSRVLAAWTGPDGSAHHGAVLADLKTPHRGDHFTLWT 129
Query 145 DSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAI----LIRVRNASWQH 200
D G++V P A A A LA G AA++ L+ R + ++R R A W
Sbjct 130 DQQGRMVGRPLDTATATTHAMLAGFG----AAAMSAGLVEGGRRLIVWRMVRRRYARWDQ 185
Query 201 DID 203
D
Sbjct 186 AWD 188
>gi|291455559|ref|ZP_06594949.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291358508|gb|EFE85410.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=201
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/197 (32%), Positives = 89/197 (46%), Gaps = 22/197 (11%)
Query 23 RTI--LRVFSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAA-AAGTAVQDSRSHVYAHQA 79
RTI L + RNPL R TDR+EA + LL + L P+ A G+A + + A +
Sbjct 2 RTIPGLWRWRRNPLYRRTDRVEAWLALLCGVLLLAGAPWVALTVGSATEHALLETAAAER 61
Query 80 QTRHPATATVIDHEG--VIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVNAKPGTKS 136
R ATV G V D++ AP T+I V A W +G R+G++ A PG+++
Sbjct 62 AQRRQTVATVDRPLGRPVYDADPETAQAP-HTRIRVVAHWTAPDGTARTGKIVAPPGSEA 120
Query 137 -GDRVGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAI------ 189
GDR IW D G PAR +A WL+ A A L +
Sbjct 121 PGDRFRIWTDLRGS-------PARPPMPPMMAQTHAWLAGIGAATAWGVLVEGVRRGARW 173
Query 190 -LIRVRNASWQHDIDSL 205
++R R A W + + +
Sbjct 174 RIVRFRYACWDREWERV 190
>gi|294628027|ref|ZP_06706587.1| membrane protein [Streptomyces sp. e14]
gi|292831360|gb|EFF89709.1| membrane protein [Streptomyces sp. e14]
Length=201
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/188 (34%), Positives = 84/188 (45%), Gaps = 22/188 (11%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAA-AGTAVQDSRSHVYAHQAQTRHPATA 87
+ NPL R TD +E V L+++ + L+ P A + G+A QD+ Q Q+RH A
Sbjct 10 WRHNPLRRTTDLVECWVALVSLLLVLVAAPVAGSLVGSAAQDALQQSVRDQRQSRHLVQA 69
Query 88 TVI----DHEGVIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVN---AKPGTKSGDR 139
TV+ D D +A A V A W +G R G V KP + GDR
Sbjct 70 TVVARATDEVPRPDPEISAGRA---VGSRVVADWTAPDGTRRHGRVATDLKKP--RPGDR 124
Query 140 VGIWVDSAGQLVDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAI----LIRVRN 195
+W D+ G+ V P A A A LA LG A VA AL+ R + L+R R
Sbjct 125 FALWTDAHGRTVPRPLDSGTATAHAVLAGLG----TAMVAAALVECVRRLILWRLVRRRY 180
Query 196 ASWQHDID 203
A W D
Sbjct 181 ARWDQAWD 188
>gi|226306902|ref|YP_002766862.1| hypothetical protein RER_34150 [Rhodococcus erythropolis PR4]
gi|226186019|dbj|BAH34123.1| hypothetical protein RER_34150 [Rhodococcus erythropolis PR4]
Length=194
Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/187 (30%), Positives = 85/187 (46%), Gaps = 26/187 (13%)
Query 29 FSRNPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATAT 88
+S N L+R +DR+ + +++ AV + L IP AAA T+V S + R
Sbjct 21 WSSNRLMRPSDRIWSSLVIAAVAIGTLAIPVAAAVCTSVYAS--------GRAR------ 66
Query 89 VIDHEGVIDSNTTATSAP---PRTKITVPAR----WVVNGIERSGEVNAKPGTKSGDRVG 141
I+ + +DS + T +P P TK AR W +NG R+ + A + GD +
Sbjct 67 -IEQQQHVDSQWSGTVSPDPVPGTKDMGAARKVVAWTMNGTARTEPLVAHFSARPGDTIA 125
Query 142 IWVDSAGQLVDEPAPPARAIADAALAALGLWL-SVAAVAGALLALTRAILIRVRNA-SWQ 199
+W ++ G V P + D AA+ L+ SV AV G L A LI RN +W
Sbjct 126 VWTNATGDQVPPPPQTSSTAVDGIAAAIKLYCASVLAVHGILTAAR--TLISWRNGRTWD 183
Query 200 HDIDSLF 206
+ F
Sbjct 184 AEWSGAF 190
>gi|256376539|ref|YP_003100199.1| hypothetical protein Amir_2413 [Actinosynnema mirum DSM 43827]
gi|255920842|gb|ACU36353.1| hypothetical protein Amir_2413 [Actinosynnema mirum DSM 43827]
Length=186
Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/171 (31%), Positives = 75/171 (44%), Gaps = 4/171 (2%)
Query 32 NPLVRGTDRLEAVVMLLAVTVSLLTIPFAAAAGTAVQDSRSHVYAHQAQTRHPATATVID 91
NPL R DRL + L V+ + +P A A GT S + HQ T PA A ++
Sbjct 8 NPLARAGDRLVGALFGLVWVVAAIGMPVAGAVGTRTHTHLSDLSDHQTSTTTPAQAVLLT 67
Query 92 HEGVIDSNTTATSAPPRTKITVPARWVV-NGIERSGEVNAKPGTKSGDRVGIWVDSAGQL 150
D++T A + VPA W +G R+G V A +G V IW++ G
Sbjct 68 DSPHSDASTIGAGA---ERTQVPATWQTQDGTLRTGTVEAANDLTAGTPVPIWLNPEGTP 124
Query 151 VDEPAPPARAIADAALAALGLWLSVAAVAGALLALTRAILIRVRNASWQHD 201
+P A+ AA A LG WL++ A A A + R +W+ +
Sbjct 125 TPKPLTSGEALLGAAGAGLGTWLALVATATGCGATAHIAVRRAHLRAWERE 175
Lambda K H
0.321 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 245963417238
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40