BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1740
Length=70
Score E
Sequences producing significant alignments: (Bits) Value
gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tubercu... 134 4e-30
gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycoba... 134 5e-30
gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [... 132 2e-29
gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberc... 132 2e-29
gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541... 130 9e-29
gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [... 124 6e-27
gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription f... 100 9e-20
gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycoba... 93.2 1e-17
gi|153875417|ref|ZP_02003229.1| Rv0623-like transcription factor... 69.7 1e-10
gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcrip... 64.7 4e-09
gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [N... 64.3 6e-09
gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcript... 63.9 8e-09
gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sino... 63.2 1e-08
gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomo... 62.8 1e-08
gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudom... 62.0 3e-08
gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [R... 61.2 5e-08
gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodo... 59.7 1e-07
gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription... 59.3 2e-07
gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcrip... 58.5 3e-07
gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeo... 57.4 6e-07
gi|316934114|ref|YP_004109096.1| protein transcription factor [R... 56.6 1e-06
gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomo... 56.6 1e-06
gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription... 53.9 8e-06
gi|227819247|ref|YP_002823218.1| hypothetical protein NGR_b10120... 50.8 7e-05
gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobac... 50.1 1e-04
gi|254423155|ref|ZP_05036873.1| hypothetical protein S7335_3309 ... 49.7 2e-04
gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcrip... 48.9 2e-04
gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap... 48.9 2e-04
gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [J... 48.5 4e-04
gi|340776554|ref|ZP_08696497.1| protein transcription factor [Ac... 45.8 0.002
gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 ... 43.5 0.011
gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix tran... 43.1 0.013
gi|153869461|ref|ZP_01999054.1| hypothetical protein BGP_1681 [B... 40.0 0.12
gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [F... 39.3 0.22
gi|282895550|ref|ZP_06303687.1| hypothetical protein CRD_00182 [... 38.9 0.27
gi|339499338|ref|YP_004697373.1| ribbon-helix-helix transcriptio... 36.6 1.2
gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycoba... 36.2 1.6
gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcript... 35.0 3.9
gi|120402182|ref|YP_952011.1| transcription factor [Mycobacteriu... 34.7 4.3
gi|284041785|ref|YP_003392125.1| hypothetical protein Cwoe_0314 ... 34.3 5.8
gi|326775306|ref|ZP_08234571.1| Saccharopine dehydrogenase (NAD(... 33.5 9.9
>gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tuberculosis SUMu001]
gi|308370808|ref|ZP_07422802.2| antitoxin [Mycobacterium tuberculosis SUMu003]
gi|308372041|ref|ZP_07427168.2| antitoxin [Mycobacterium tuberculosis SUMu004]
15 more sequence titles
Length=72
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/70 (100%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI
Sbjct 3 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 62
Query 61 LGYDERGLPA 70
LGYDERGLPA
Sbjct 63 LGYDERGLPA 72
>gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycobacterium tuberculosis H37Rv]
gi|15841204|ref|NP_336241.1| hypothetical protein MT1782 [Mycobacterium tuberculosis CDC1551]
gi|31792928|ref|NP_855421.1| hypothetical protein Mb1769 [Mycobacterium bovis AF2122/97]
45 more sequence titles
Length=70
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/70 (100%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI
Sbjct 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
Query 61 LGYDERGLPA 70
LGYDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289694418|gb|EFD61847.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%)
Query 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
MELAARMGETLTQAVVVAVREQLARR GRTRSISLREELAAIGRRCAALPVLDTRAADTI
Sbjct 1 MELAARMGETLTQAVVVAVREQLARRAGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
Query 61 LGYDERGLPA 70
LGYDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289554486|ref|ZP_06443696.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|297634295|ref|ZP_06952075.1| antitoxin [Mycobacterium tuberculosis KZN 4207]
gi|297731282|ref|ZP_06960400.1| antitoxin [Mycobacterium tuberculosis KZN R506]
gi|313658614|ref|ZP_07815494.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
gi|253320721|gb|ACT25324.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289439118|gb|EFD21611.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328458973|gb|AEB04396.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=70
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%)
Query 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRC ALPVLDTRAADTI
Sbjct 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCEALPVLDTRAADTI 60
Query 61 LGYDERGLPA 70
LGYDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541 [Mycobacterium canettii CIPT
140010059]
gi|340004938|emb|CCC44086.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=70
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/70 (98%), Positives = 68/70 (98%), Gaps = 0/70 (0%)
Query 1 MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
MELAAR GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAAD I
Sbjct 1 MELAARTGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADKI 60
Query 61 LGYDERGLPA 70
LGYDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254550753|ref|ZP_05141200.1| hypothetical protein Mtube_09889 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|124600992|gb|EAY60002.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=64
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)
Query 7 MGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDER 66
MGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDER
Sbjct 1 MGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDER 60
Query 67 GLPA 70
GLPA
Sbjct 61 GLPA 64
>gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein
[Mycobacterium smegmatis str. MC2 155]
Length=84
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/69 (74%), Positives = 61/69 (89%), Gaps = 0/69 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
ELAAR GETLT+AVV+A+RE+LAR GRT+ + LREELAAI RRCAALPVLD R A++IL
Sbjct 16 ELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRCAALPVLDDRTAESIL 75
Query 62 GYDERGLPA 70
GYD+RGLP+
Sbjct 76 GYDDRGLPS 84
>gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycobacterium tuberculosis H37Rv]
gi|15840024|ref|NP_335061.1| hypothetical protein MT0651 [Mycobacterium tuberculosis CDC1551]
gi|31791805|ref|NP_854298.1| hypothetical protein Mb0639 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=84
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)
Query 8 GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDERG 67
GETLT+AVV A+RE+LAR TGR R + LR+ELAAI RCAALPV+D R+A+ ILGYDERG
Sbjct 22 GETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDERG 81
Query 68 LPA 70
LPA
Sbjct 82 LPA 84
>gi|153875417|ref|ZP_02003229.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
gi|152068117|gb|EDN66769.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
Length=102
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (50%), Positives = 47/67 (71%), Gaps = 0/67 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
EL + GETLTQAV+ A+RE++ + +ISL++EL IG+ CAALP+LD R + IL
Sbjct 4 ELISYTGETLTQAVLNALRERIKTEKRKGAAISLKDELLQIGKECAALPILDNRTPEEIL 63
Query 62 GYDERGL 68
GY+ G+
Sbjct 64 GYNNNGV 70
>gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium
nodulans ORS 2060]
gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium
nodulans ORS 2060]
Length=84
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/67 (56%), Positives = 44/67 (66%), Gaps = 0/67 (0%)
Query 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
LA R GET+T A A+ E+L R R +L E+LAA RR + LPVLD R+AD ILG
Sbjct 17 LAERTGETITVATRKALEERLRRVGSDARKAALLEDLAACRRRWSTLPVLDPRSADEILG 76
Query 63 YDERGLP 69
YDE GLP
Sbjct 77 YDENGLP 83
>gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
Length=84
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/67 (48%), Positives = 44/67 (66%), Gaps = 0/67 (0%)
Query 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
LA R GET+T A A+ E+L R + R +L E++ A+ RR ALP+LD R+ D I+G
Sbjct 17 LAQRTGETITVATRRAIEERLKRTESQARKAALLEDMEAMQRRLNALPILDPRSPDDIIG 76
Query 63 YDERGLP 69
YDE G+P
Sbjct 77 YDENGVP 83
>gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira
thiodismutans ASO3-1]
Length=83
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/66 (49%), Positives = 45/66 (69%), Gaps = 0/66 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
E+AAR GE +TQA++ ++ E+L R + ++ + EEL AI RC ALP LD R+ + IL
Sbjct 16 EVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRCQALPDLDQRSEEEIL 75
Query 62 GYDERG 67
GYDE G
Sbjct 76 GYDEHG 81
>gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sinorhizobium meliloti 1021]
gi|334315271|ref|YP_004547890.1| protein transcription factor [Sinorhizobium meliloti AK83]
gi|15073736|emb|CAC45377.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810692|gb|AEG03361.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
BL225C]
gi|334094265|gb|AEG52276.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
AK83]
gi|336031809|gb|AEH77741.1| hypothetical protein SM11_chr0460 [Sinorhizobium meliloti SM11]
Length=84
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (68%), Gaps = 0/68 (0%)
Query 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
LA R GE++T A A+ E+L R R +L E+L AI RR A+PVLD+R++D I+G
Sbjct 17 LARRTGESITLATKRALEERLRRTDTAARRAALLEDLEAIQRRWNAMPVLDSRSSDDIIG 76
Query 63 YDERGLPA 70
YDE GLP+
Sbjct 77 YDEDGLPS 84
>gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomonas palustris BisB18]
gi|90107432|gb|ABD89469.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB18]
Length=83
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/69 (56%), Positives = 46/69 (67%), Gaps = 3/69 (4%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI 60
ELA GE+LT AV A+REQL R R ++ E+L IGRR A+LP D+ R+AD I
Sbjct 16 ELAELTGESLTAAVTAALREQLVRERRRRQTDQAAEQLMKIGRRYASLP--DSGRSADDI 73
Query 61 LGYDERGLP 69
LGYDE GLP
Sbjct 74 LGYDEHGLP 82
>gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53]
gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris BisA53]
Length=86
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/69 (56%), Positives = 44/69 (64%), Gaps = 3/69 (4%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI 60
ELA GE+LT AV A+REQLAR R +S + E L IG A+LP DT R+ D I
Sbjct 19 ELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHYASLP--DTGRSPDEI 76
Query 61 LGYDERGLP 69
LGYDE GLP
Sbjct 77 LGYDEHGLP 85
>gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB5]
gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB5]
Length=83
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/69 (56%), Positives = 44/69 (64%), Gaps = 3/69 (4%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI 60
ELA GE+LT AV A+REQLAR R ++ + E L IG R AALP DT R D +
Sbjct 16 ELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRYAALP--DTGRTPDDV 73
Query 61 LGYDERGLP 69
LGYDE GLP
Sbjct 74 LGYDEHGLP 82
>gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodopseudomonas palustris CGA009]
gi|316935648|ref|YP_004110630.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
gi|39651059|emb|CAE29582.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|315603362|gb|ADU45897.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris DX-1]
Length=83
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/69 (56%), Positives = 44/69 (64%), Gaps = 3/69 (4%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI 60
ELA GE+LT AV A+REQLAR R ++ + + L IG R AALP DT R D I
Sbjct 16 ELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRYAALP--DTGRTPDEI 73
Query 61 LGYDERGLP 69
LGYDE GLP
Sbjct 74 LGYDENGLP 82
>gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus
sp. CB0101]
Length=89
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (45%), Positives = 45/74 (61%), Gaps = 5/74 (6%)
Query 2 ELAARMGETLTQAVVVAVREQLAR-----RTGRTRSISLREELAAIGRRCAALPVLDTRA 56
++A GET T AV++A++E+L R G+ R SL L I RCAA P+LD+ +
Sbjct 16 QVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRLDQIALRCAARPILDSSS 75
Query 57 ADTILGYDERGLPA 70
AD I GYD GLP+
Sbjct 76 ADEICGYDASGLPS 89
>gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris TIE-1]
gi|192286729|gb|ACF03110.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris TIE-1]
Length=83
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/69 (54%), Positives = 44/69 (64%), Gaps = 3/69 (4%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI 60
ELA GE+LT AV A+REQLAR R ++ + + L IG R AA+P DT R D I
Sbjct 16 ELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRYAAVP--DTGRTPDEI 73
Query 61 LGYDERGLP 69
LGYDE GLP
Sbjct 74 LGYDENGLP 82
>gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeobacter violaceus PCC 7421]
gi|35213795|dbj|BAC91165.1| gsr3224 [Gloeobacter violaceus PCC 7421]
Length=92
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/70 (49%), Positives = 45/70 (65%), Gaps = 3/70 (4%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRS--ISLREELAAIGRRCAALPVLDTRAADT 59
EL+ GE++TQA+ A+ E+L + +TRS + E L A+G R ALP+LD RA D
Sbjct 17 ELSRLTGESVTQAITTAIEERLEKIRAQTRSRREGIAERLLALGTRSVALPILDPRAPDE 76
Query 60 ILGYDERGLP 69
IL YDE GLP
Sbjct 77 IL-YDENGLP 85
>gi|316934114|ref|YP_004109096.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
gi|315601828|gb|ADU44363.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris DX-1]
Length=84
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/68 (52%), Positives = 45/68 (67%), Gaps = 0/68 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
LA GET+TQA A+ E+L R G++R L E++AAI +R A+PV D R AD I+
Sbjct 16 HLAQATGETITQATRRALEERLRRVGGQSRRAELLEDMAAIRQRWRAMPVRDDRTADEIV 75
Query 62 GYDERGLP 69
GYDE GLP
Sbjct 76 GYDEHGLP 83
>gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18]
gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB18]
Length=84
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/67 (45%), Positives = 42/67 (63%), Gaps = 0/67 (0%)
Query 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
LA GE +T A A+ ++L+R G +R +L +E+A I RR + LPV+D R + ILG
Sbjct 17 LARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRRWSELPVVDDRTPEEILG 76
Query 63 YDERGLP 69
YD GLP
Sbjct 77 YDAHGLP 83
>gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription factor, family protein [Synechococcus
sp. CB0101]
Length=76
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/69 (45%), Positives = 42/69 (61%), Gaps = 8/69 (11%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
++A GET + AV++A++E+L R SL L I RCAA P+LD R+AD I
Sbjct 16 QVACLAGETKSDAVILALKERLQR--------SLIYRLDQIALRCAARPILDLRSADEIC 67
Query 62 GYDERGLPA 70
GYD GLP+
Sbjct 68 GYDASGLPS 76
>gi|227819247|ref|YP_002823218.1| hypothetical protein NGR_b10120 [Sinorhizobium fredii NGR234]
gi|227338246|gb|ACP22465.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=84
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/67 (51%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
LA + GET+T A A+ E+L R L EELAA +R A LPV D R+AD ILG
Sbjct 17 LAEKTGETITMATRRALEERLRRLANAGNRDVLLEELAASRKRWARLPVADNRSADEILG 76
Query 63 YDERGLP 69
YD GLP
Sbjct 77 YDGNGLP 83
>gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2]
gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus
Py2]
Length=85
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/69 (48%), Positives = 41/69 (60%), Gaps = 1/69 (1%)
Query 2 ELAARMGETLTQAVVVAVREQLARR-TGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
ELA R G T T A+ A+ E+L R G T L EL AI R A LP LDTR+ + I
Sbjct 16 ELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLLGELRAIRERVARLPELDTRSDEEI 75
Query 61 LGYDERGLP 69
+G+DE G+P
Sbjct 76 VGFDEHGIP 84
>gi|254423155|ref|ZP_05036873.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
gi|196190644|gb|EDX85608.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
Length=63
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (44%), Positives = 35/62 (57%), Gaps = 3/62 (4%)
Query 11 LTQAVVVAVREQLARRTGR---TRSISLREELAAIGRRCAALPVLDTRAADTILGYDERG 67
+T+ V A+++ L R ++ L E L I RCAALP D R+AD I GYDE G
Sbjct 1 MTETVKTALQQALFRHKTEQEGSKPRPLAERLNEIALRCAALPDCDKRSADDIFGYDEDG 60
Query 68 LP 69
LP
Sbjct 61 LP 62
>gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita
DSM 44233]
gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita
DSM 44233]
Length=84
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/68 (46%), Positives = 38/68 (56%), Gaps = 0/68 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
ELAA GE+LT A A+ E+L+R R R+ L RR VLD R+ D I+
Sbjct 16 ELAAEAGESLTVATRRAIEERLSRLRARKRANDPDLGLDEFIRRGRERAVLDERSPDDII 75
Query 62 GYDERGLP 69
GYDE GLP
Sbjct 76 GYDEHGLP 83
>gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti]
gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=85
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/69 (45%), Positives = 41/69 (60%), Gaps = 1/69 (1%)
Query 2 ELAARMGETLTQAVVVAVREQLARR-TGRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
ELA R G + T A+ A+ E+L R G L EL AI +R A LP LD+R+ + I
Sbjct 16 ELARRQGISKTAAIHQALSERLHRMGHGEVSQDRLLGELRAIRQRIARLPELDSRSDEEI 75
Query 61 LGYDERGLP 69
+GYDE G+P
Sbjct 76 IGYDEHGIP 84
>gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
Length=86
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/71 (46%), Positives = 41/71 (58%), Gaps = 2/71 (2%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISL--REELAAIGRRCAALPVLDTRAADT 59
ELAA GE++T A A+ E+L R + R+I + + I R A PVLD R D
Sbjct 16 ELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGIIARGRARPVLDARPVDE 75
Query 60 ILGYDERGLPA 70
ILGYDE GLP+
Sbjct 76 ILGYDENGLPS 86
>gi|340776554|ref|ZP_08696497.1| protein transcription factor [Acetobacter aceti NBRC 14818]
Length=84
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 39/68 (58%), Gaps = 0/68 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
ELA GE LT AV A+RE+L R R + E L IGRR AALP + D IL
Sbjct 16 ELARLTGENLTSAVTTALRERLDRERRRHARNDVAERLMTIGRRYAALPDGASTDPDAIL 75
Query 62 GYDERGLP 69
GYDE G+P
Sbjct 76 GYDENGVP 83
>gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
Length=84
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/68 (42%), Positives = 39/68 (58%), Gaps = 0/68 (0%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL 61
ELAA GE++T A A+ E+L R R + S +L + R + P LD R+A+ IL
Sbjct 16 ELAAATGESITVAARRAIEERLERVRARADAGSASVDLGDLIERARSRPDLDVRSAEEIL 75
Query 62 GYDERGLP 69
GY + GLP
Sbjct 76 GYGDDGLP 83
>gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix transcription factor, Rv0623 family
[Cyanobium sp. PCC 7001]
gi|197625311|gb|EDY37870.1| probable ribbon-helix-helix transcription factor, Rv0623 family
[Cyanobium sp. PCC 7001]
Length=89
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/74 (44%), Positives = 40/74 (55%), Gaps = 5/74 (6%)
Query 2 ELAARMGETLTQAVVVAVREQL-----ARRTGRTRSISLREELAAIGRRCAALPVLDTRA 56
ELAA G+T T AV+ A++E+L + G E L AI R AA P D R
Sbjct 16 ELAALSGQTKTDAVIQALKERLETLKRQQEDGGQARRRRLERLEAIALRAAARPQRDPRC 75
Query 57 ADTILGYDERGLPA 70
A+ ILGYD GLP+
Sbjct 76 AEEILGYDSSGLPS 89
>gi|153869461|ref|ZP_01999054.1| hypothetical protein BGP_1681 [Beggiatoa sp. PS]
gi|152074052|gb|EDN70952.1| hypothetical protein BGP_1681 [Beggiatoa sp. PS]
Length=99
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (72%), Gaps = 0/35 (0%)
Query 33 ISLREELAAIGRRCAALPVLDTRAADTILGYDERG 67
+ + ++ I +RCAALP D+R+ + ILGY+++G
Sbjct 62 LQIFHQVMEISKRCAALPTQDSRSENDILGYNDQG 96
>gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [Frankia sp. CcI3]
gi|86565825|gb|ABD09634.1| Rv0623-like transcription factor [Frankia sp. CcI3]
Length=89
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/71 (46%), Positives = 39/71 (55%), Gaps = 5/71 (7%)
Query 2 ELAARMGETLTQAVVVAVREQLAR-RTGRTRSISLREELAAIGRR-CAALPVLDTRAADT 59
ELA GET+T AV+VAVRE+L R R R + A+GR+ AA+P D
Sbjct 22 ELAELTGETVTTAVLVAVRERLERMRADRDEGEQRAARIVALGRQTAAAVPPPGLSIEDL 81
Query 60 ILGYDERGLPA 70
YDE GLPA
Sbjct 82 ---YDEHGLPA 89
>gi|282895550|ref|ZP_06303687.1| hypothetical protein CRD_00182 [Raphidiopsis brookii D9]
gi|281199583|gb|EFA74446.1| hypothetical protein CRD_00182 [Raphidiopsis brookii D9]
Length=89
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/55 (37%), Positives = 30/55 (55%), Gaps = 3/55 (5%)
Query 16 VVAVREQLARRTGRTRSISLREELAAI---GRRCAALPVLDTRAADTILGYDERG 67
++++ E T + +S + AAI RRC LP LD+R+ D I+GYD G
Sbjct 32 LISLLENCRDNTENSLELSSDDRFAAIMNISRRCRTLPQLDSRSPDEIVGYDANG 86
>gi|339499338|ref|YP_004697373.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta
caldaria DSM 7334]
gi|338833687|gb|AEJ18865.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta
caldaria DSM 7334]
Length=85
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (35%), Positives = 39/69 (57%), Gaps = 6/69 (8%)
Query 2 ELAARMGETLTQAVVVAVR--EQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT 59
ELA G+++T+ ++ A++ + A G + + L+E I R CA P LD R +
Sbjct 15 ELATAEGKSMTETILEALQRLKTEAAGEGERKKVILKE----IARTCALAPDLDLRQPEK 70
Query 60 ILGYDERGL 68
ILGYD+ G+
Sbjct 71 ILGYDDIGV 79
>gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycobacterium tuberculosis H37Rv]
gi|15840008|ref|NP_335045.1| hypothetical protein MT0637 [Mycobacterium tuberculosis CDC1551]
gi|31791790|ref|NP_854283.1| hypothetical protein Mb0624 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=81
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 5/70 (7%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-I 60
++A GE+ +AV AV E+LA R RS L L AIG + A+ + + D
Sbjct 16 QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA 71
Query 61 LGYDERGLPA 70
L YDERGLPA
Sbjct 72 LLYDERGLPA 81
>gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcription factor [Acidobacterium sp.
MP5ACTX8]
gi|298599417|gb|EFI55577.1| Rv0623 family protein transcription factor [Acidobacterium sp.
MP5ACTX8]
Length=91
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query 3 LAARMGETLTQAVVVAVREQLARRT--GRTRSISLREELAAIGRRCAALPVLDTRAADTI 60
LA+ GE++T+A+ A E+L R G+ S EE+ A+ R P+ + D I
Sbjct 22 LASVTGESITEAIGAAAEERLIRFNAAGKNLSSPSVEEVLAMIRSFNLKPINEDLTDDEI 81
Query 61 LGYDERGL 68
LGY G
Sbjct 82 LGYGPEGF 89
>gi|120402182|ref|YP_952011.1| transcription factor [Mycobacterium vanbaalenii PYR-1]
gi|119955000|gb|ABM12005.1| Rv0623 family protein transcription factor [Mycobacterium vanbaalenii
PYR-1]
Length=81
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/69 (41%), Positives = 37/69 (54%), Gaps = 5/69 (7%)
Query 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-I 60
+LA GE+ QAV AV+E+L+ R + L E L A+GRR A T+ D
Sbjct 16 QLARLTGESQAQAVATAVQERLS----RVQQDDLAERLLALGRRTAQRMTSATKNLDHGE 71
Query 61 LGYDERGLP 69
L YD+ GLP
Sbjct 72 LLYDDAGLP 80
>gi|284041785|ref|YP_003392125.1| hypothetical protein Cwoe_0314 [Conexibacter woesei DSM 14684]
gi|283946006|gb|ADB48750.1| hypothetical protein Cwoe_0314 [Conexibacter woesei DSM 14684]
Length=72
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/28 (61%), Positives = 20/28 (72%), Gaps = 0/28 (0%)
Query 42 IGRRCAALPVLDTRAADTILGYDERGLP 69
I RR A+ VLD R+ D ILGYD+ GLP
Sbjct 44 IVRRAASRRVLDPRSPDEILGYDDDGLP 71
>gi|326775306|ref|ZP_08234571.1| Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) [Streptomyces
cf. griseus XylebKG-1]
gi|326655639|gb|EGE40485.1| Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) [Streptomyces
griseus XylebKG-1]
Length=396
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query 9 ETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAAD 58
E L VR LA R+ RT+ LRE L AI CA LP+L+T A D
Sbjct 28 EYLAAHAPAGVRWALAGRS-RTKLEGLRERLTAIAPGCAELPLLETDADD 76
Lambda K H
0.322 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128245544896
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40