BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1740

Length=70
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308231916|ref|ZP_07414265.2|  antitoxin [Mycobacterium tubercu...   134    4e-30
gi|15608878|ref|NP_216256.1|  hypothetical protein Rv1740 [Mycoba...   134    5e-30
gi|289753831|ref|ZP_06513209.1|  conserved hypothetical protein [...   132    2e-29
gi|253799218|ref|YP_003032219.1|  antitoxin [Mycobacterium tuberc...   132    2e-29
gi|340626748|ref|YP_004745200.1|  hypothetical protein MCAN_17541...   130    9e-29
gi|254231933|ref|ZP_04925260.1|  conserved hypothetical protein [...   124    6e-27
gi|118468950|ref|YP_885673.1|  ribbon-helix-helix transcription f...   100    9e-20
gi|15607763|ref|NP_215137.1|  hypothetical protein Rv0623 [Mycoba...  93.2    1e-17
gi|153875417|ref|ZP_02003229.1|  Rv0623-like transcription factor...  69.7    1e-10
gi|220919622|ref|YP_002494925.1|  Rv0623 family protein transcrip...  64.7    4e-09
gi|92109699|ref|YP_571985.1|  Rv0623-like transcription factor [N...  64.3    6e-09
gi|298529280|ref|ZP_07016683.1|  Rv0623 family protein transcript...  63.9    8e-09
gi|15964558|ref|NP_384911.1|  hypothetical protein SMc00899 [Sino...  63.2    1e-08
gi|90425418|ref|YP_533788.1|  transcription factor [Rhodopseudomo...  62.8    1e-08
gi|115526059|ref|YP_782970.1|  transcription factor [Rhodopseudom...  62.0    3e-08
gi|91975925|ref|YP_568584.1|  Rv0623-like transcription factor [R...  61.2    5e-08
gi|39937201|ref|NP_949477.1|  hypothetical protein RPA4141 [Rhodo...  59.7    1e-07
gi|318040913|ref|ZP_07972869.1|  ribbon-helix-helix transcription...  59.3    2e-07
gi|192292980|ref|YP_001993585.1|  Rv0623 family protein transcrip...  58.5    3e-07
gi|37522793|ref|NP_926170.1|  hypothetical protein gsr3224 [Gloeo...  57.4    6e-07
gi|316934114|ref|YP_004109096.1|  protein transcription factor [R...  56.6    1e-06
gi|90422854|ref|YP_531224.1|  transcription factor [Rhodopseudomo...  56.6    1e-06
gi|318040906|ref|ZP_07972862.1|  ribbon-helix-helix transcription...  53.9    8e-06
gi|227819247|ref|YP_002823218.1|  hypothetical protein NGR_b10120...  50.8    7e-05
gi|154243677|ref|YP_001409250.1|  transcription factor [Xanthobac...  50.1    1e-04
gi|254423155|ref|ZP_05036873.1|  hypothetical protein S7335_3309 ...  49.7    2e-04
gi|258650322|ref|YP_003199478.1|  Rv0623 family protein transcrip...  48.9    2e-04
gi|270208573|ref|YP_003329344.1|  hypothetical protein pSmeSM11ap...  48.9    2e-04
gi|84495503|ref|ZP_00994622.1|  hypothetical protein JNB_11894 [J...  48.5    4e-04
gi|340776554|ref|ZP_08696497.1|  protein transcription factor [Ac...  45.8    0.002
gi|336116292|ref|YP_004571058.1|  hypothetical protein MLP_06410 ...  43.5    0.011
gi|254430858|ref|ZP_05044561.1|  probable ribbon-helix-helix tran...  43.1    0.013
gi|153869461|ref|ZP_01999054.1|  hypothetical protein BGP_1681 [B...  40.0    0.12 
gi|86738963|ref|YP_479363.1|  Rv0623-like transcription factor [F...  39.3    0.22 
gi|282895550|ref|ZP_06303687.1|  hypothetical protein CRD_00182 [...  38.9    0.27 
gi|339499338|ref|YP_004697373.1|  ribbon-helix-helix transcriptio...  36.6    1.2  
gi|15607748|ref|NP_215122.1|  hypothetical protein Rv0608 [Mycoba...  36.2    1.6  
gi|299138781|ref|ZP_07031959.1|  Rv0623 family protein transcript...  35.0    3.9  
gi|120402182|ref|YP_952011.1|  transcription factor [Mycobacteriu...  34.7    4.3  
gi|284041785|ref|YP_003392125.1|  hypothetical protein Cwoe_0314 ...  34.3    5.8  
gi|326775306|ref|ZP_08234571.1|  Saccharopine dehydrogenase (NAD(...  33.5    9.9  


>gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308370808|ref|ZP_07422802.2| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|308372041|ref|ZP_07427168.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 15 more sequence titles
 Length=72

 Score =  134 bits (337),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%), Gaps = 0/70 (0%)

Query  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI
Sbjct  3   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  62

Query  61  LGYDERGLPA  70
           LGYDERGLPA
Sbjct  63  LGYDERGLPA  72


>gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycobacterium tuberculosis H37Rv]
 gi|15841204|ref|NP_336241.1| hypothetical protein MT1782 [Mycobacterium tuberculosis CDC1551]
 gi|31792928|ref|NP_855421.1| hypothetical protein Mb1769 [Mycobacterium bovis AF2122/97]
 45 more sequence titles
 Length=70

 Score =  134 bits (337),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%), Gaps = 0/70 (0%)

Query  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI
Sbjct  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60

Query  61  LGYDERGLPA  70
           LGYDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289694418|gb|EFD61847.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%)

Query  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           MELAARMGETLTQAVVVAVREQLARR GRTRSISLREELAAIGRRCAALPVLDTRAADTI
Sbjct  1   MELAARMGETLTQAVVVAVREQLARRAGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60

Query  61  LGYDERGLPA  70
           LGYDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289554486|ref|ZP_06443696.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297634295|ref|ZP_06952075.1| antitoxin [Mycobacterium tuberculosis KZN 4207]
 gi|297731282|ref|ZP_06960400.1| antitoxin [Mycobacterium tuberculosis KZN R506]
 gi|313658614|ref|ZP_07815494.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
 gi|253320721|gb|ACT25324.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289439118|gb|EFD21611.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328458973|gb|AEB04396.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=70

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%)

Query  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRC ALPVLDTRAADTI
Sbjct  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCEALPVLDTRAADTI  60

Query  61  LGYDERGLPA  70
           LGYDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541 [Mycobacterium canettii CIPT 
140010059]
 gi|340004938|emb|CCC44086.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=70

 Score =  130 bits (326),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 68/70 (98%), Positives = 68/70 (98%), Gaps = 0/70 (0%)

Query  1   MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           MELAAR GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAAD I
Sbjct  1   MELAARTGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADKI  60

Query  61  LGYDERGLPA  70
           LGYDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254550753|ref|ZP_05141200.1| hypothetical protein Mtube_09889 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|124600992|gb|EAY60002.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=64

 Score =  124 bits (310),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  7   MGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDER  66
           MGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDER
Sbjct  1   MGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDER  60

Query  67  GLPA  70
           GLPA
Sbjct  61  GLPA  64


>gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium 
smegmatis str. MC2 155]
 gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein 
[Mycobacterium smegmatis str. MC2 155]
Length=84

 Score =  100 bits (248),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 51/69 (74%), Positives = 61/69 (89%), Gaps = 0/69 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           ELAAR GETLT+AVV+A+RE+LAR  GRT+ + LREELAAI RRCAALPVLD R A++IL
Sbjct  16  ELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRCAALPVLDDRTAESIL  75

Query  62  GYDERGLPA  70
           GYD+RGLP+
Sbjct  76  GYDDRGLPS  84


>gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycobacterium tuberculosis H37Rv]
 gi|15840024|ref|NP_335061.1| hypothetical protein MT0651 [Mycobacterium tuberculosis CDC1551]
 gi|31791805|ref|NP_854298.1| hypothetical protein Mb0639 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=84

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)

Query  8   GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDERG  67
           GETLT+AVV A+RE+LAR TGR R + LR+ELAAI  RCAALPV+D R+A+ ILGYDERG
Sbjct  22  GETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDERG  81

Query  68  LPA  70
           LPA
Sbjct  82  LPA  84


>gi|153875417|ref|ZP_02003229.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
 gi|152068117|gb|EDN66769.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
Length=102

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 33/67 (50%), Positives = 47/67 (71%), Gaps = 0/67 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           EL +  GETLTQAV+ A+RE++     +  +ISL++EL  IG+ CAALP+LD R  + IL
Sbjct  4   ELISYTGETLTQAVLNALRERIKTEKRKGAAISLKDELLQIGKECAALPILDNRTPEEIL  63

Query  62  GYDERGL  68
           GY+  G+
Sbjct  64  GYNNNGV  70


>gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium 
nodulans ORS 2060]
 gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium 
nodulans ORS 2060]
Length=84

 Score = 64.7 bits (156),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 37/67 (56%), Positives = 44/67 (66%), Gaps = 0/67 (0%)

Query  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62
           LA R GET+T A   A+ E+L R     R  +L E+LAA  RR + LPVLD R+AD ILG
Sbjct  17  LAERTGETITVATRKALEERLRRVGSDARKAALLEDLAACRRRWSTLPVLDPRSADEILG  76

Query  63  YDERGLP  69
           YDE GLP
Sbjct  77  YDENGLP  83


>gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
 gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
Length=84

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 32/67 (48%), Positives = 44/67 (66%), Gaps = 0/67 (0%)

Query  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62
           LA R GET+T A   A+ E+L R   + R  +L E++ A+ RR  ALP+LD R+ D I+G
Sbjct  17  LAQRTGETITVATRRAIEERLKRTESQARKAALLEDMEAMQRRLNALPILDPRSPDDIIG  76

Query  63  YDERGLP  69
           YDE G+P
Sbjct  77  YDENGVP  83


>gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira 
thiodismutans ASO3-1]
 gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira 
thiodismutans ASO3-1]
Length=83

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 32/66 (49%), Positives = 45/66 (69%), Gaps = 0/66 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           E+AAR GE +TQA++ ++ E+L R   + ++ +  EEL AI  RC ALP LD R+ + IL
Sbjct  16  EVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRCQALPDLDQRSEEEIL  75

Query  62  GYDERG  67
           GYDE G
Sbjct  76  GYDEHG  81


>gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sinorhizobium meliloti 1021]
 gi|334315271|ref|YP_004547890.1| protein transcription factor [Sinorhizobium meliloti AK83]
 gi|15073736|emb|CAC45377.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810692|gb|AEG03361.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
BL225C]
 gi|334094265|gb|AEG52276.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
AK83]
 gi|336031809|gb|AEH77741.1| hypothetical protein SM11_chr0460 [Sinorhizobium meliloti SM11]
Length=84

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (68%), Gaps = 0/68 (0%)

Query  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62
           LA R GE++T A   A+ E+L R     R  +L E+L AI RR  A+PVLD+R++D I+G
Sbjct  17  LARRTGESITLATKRALEERLRRTDTAARRAALLEDLEAIQRRWNAMPVLDSRSSDDIIG  76

Query  63  YDERGLPA  70
           YDE GLP+
Sbjct  77  YDEDGLPS  84


>gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomonas palustris BisB18]
 gi|90107432|gb|ABD89469.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB18]
Length=83

 Score = 62.8 bits (151),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 38/69 (56%), Positives = 46/69 (67%), Gaps = 3/69 (4%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI  60
           ELA   GE+LT AV  A+REQL R   R ++    E+L  IGRR A+LP  D+ R+AD I
Sbjct  16  ELAELTGESLTAAVTAALREQLVRERRRRQTDQAAEQLMKIGRRYASLP--DSGRSADDI  73

Query  61  LGYDERGLP  69
           LGYDE GLP
Sbjct  74  LGYDEHGLP  82


>gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53]
 gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris BisA53]
Length=86

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 38/69 (56%), Positives = 44/69 (64%), Gaps = 3/69 (4%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI  60
           ELA   GE+LT AV  A+REQLAR   R +S  + E L  IG   A+LP  DT R+ D I
Sbjct  19  ELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHYASLP--DTGRSPDEI  76

Query  61  LGYDERGLP  69
           LGYDE GLP
Sbjct  77  LGYDEHGLP  85


>gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB5]
 gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB5]
Length=83

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 38/69 (56%), Positives = 44/69 (64%), Gaps = 3/69 (4%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI  60
           ELA   GE+LT AV  A+REQLAR   R ++  + E L  IG R AALP  DT R  D +
Sbjct  16  ELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRYAALP--DTGRTPDDV  73

Query  61  LGYDERGLP  69
           LGYDE GLP
Sbjct  74  LGYDEHGLP  82


>gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodopseudomonas palustris CGA009]
 gi|316935648|ref|YP_004110630.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
 gi|39651059|emb|CAE29582.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|315603362|gb|ADU45897.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris DX-1]
Length=83

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 38/69 (56%), Positives = 44/69 (64%), Gaps = 3/69 (4%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI  60
           ELA   GE+LT AV  A+REQLAR   R ++  + + L  IG R AALP  DT R  D I
Sbjct  16  ELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRYAALP--DTGRTPDEI  73

Query  61  LGYDERGLP  69
           LGYDE GLP
Sbjct  74  LGYDENGLP  82


>gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus 
sp. CB0101]
Length=89

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/74 (45%), Positives = 45/74 (61%), Gaps = 5/74 (6%)

Query  2   ELAARMGETLTQAVVVAVREQLAR-----RTGRTRSISLREELAAIGRRCAALPVLDTRA  56
           ++A   GET T AV++A++E+L R       G+ R  SL   L  I  RCAA P+LD+ +
Sbjct  16  QVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRLDQIALRCAARPILDSSS  75

Query  57  ADTILGYDERGLPA  70
           AD I GYD  GLP+
Sbjct  76  ADEICGYDASGLPS  89


>gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris TIE-1]
 gi|192286729|gb|ACF03110.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris TIE-1]
Length=83

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 37/69 (54%), Positives = 44/69 (64%), Gaps = 3/69 (4%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDT-RAADTI  60
           ELA   GE+LT AV  A+REQLAR   R ++  + + L  IG R AA+P  DT R  D I
Sbjct  16  ELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRYAAVP--DTGRTPDEI  73

Query  61  LGYDERGLP  69
           LGYDE GLP
Sbjct  74  LGYDENGLP  82


>gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeobacter violaceus PCC 7421]
 gi|35213795|dbj|BAC91165.1| gsr3224 [Gloeobacter violaceus PCC 7421]
Length=92

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 34/70 (49%), Positives = 45/70 (65%), Gaps = 3/70 (4%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRS--ISLREELAAIGRRCAALPVLDTRAADT  59
           EL+   GE++TQA+  A+ E+L +   +TRS    + E L A+G R  ALP+LD RA D 
Sbjct  17  ELSRLTGESVTQAITTAIEERLEKIRAQTRSRREGIAERLLALGTRSVALPILDPRAPDE  76

Query  60  ILGYDERGLP  69
           IL YDE GLP
Sbjct  77  IL-YDENGLP  85


>gi|316934114|ref|YP_004109096.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
 gi|315601828|gb|ADU44363.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris DX-1]
Length=84

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 35/68 (52%), Positives = 45/68 (67%), Gaps = 0/68 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
            LA   GET+TQA   A+ E+L R  G++R   L E++AAI +R  A+PV D R AD I+
Sbjct  16  HLAQATGETITQATRRALEERLRRVGGQSRRAELLEDMAAIRQRWRAMPVRDDRTADEIV  75

Query  62  GYDERGLP  69
           GYDE GLP
Sbjct  76  GYDEHGLP  83


>gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18]
 gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB18]
Length=84

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/67 (45%), Positives = 42/67 (63%), Gaps = 0/67 (0%)

Query  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62
           LA   GE +T A   A+ ++L+R  G +R  +L +E+A I RR + LPV+D R  + ILG
Sbjct  17  LARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRRWSELPVVDDRTPEEILG  76

Query  63  YDERGLP  69
           YD  GLP
Sbjct  77  YDAHGLP  83


>gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription factor, family protein [Synechococcus 
sp. CB0101]
Length=76

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 42/69 (61%), Gaps = 8/69 (11%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           ++A   GET + AV++A++E+L R        SL   L  I  RCAA P+LD R+AD I 
Sbjct  16  QVACLAGETKSDAVILALKERLQR--------SLIYRLDQIALRCAARPILDLRSADEIC  67

Query  62  GYDERGLPA  70
           GYD  GLP+
Sbjct  68  GYDASGLPS  76


>gi|227819247|ref|YP_002823218.1| hypothetical protein NGR_b10120 [Sinorhizobium fredii NGR234]
 gi|227338246|gb|ACP22465.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=84

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 34/67 (51%), Positives = 40/67 (60%), Gaps = 0/67 (0%)

Query  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62
           LA + GET+T A   A+ E+L R         L EELAA  +R A LPV D R+AD ILG
Sbjct  17  LAEKTGETITMATRRALEERLRRLANAGNRDVLLEELAASRKRWARLPVADNRSADEILG  76

Query  63  YDERGLP  69
           YD  GLP
Sbjct  77  YDGNGLP  83


>gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2]
 gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus 
Py2]
Length=85

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 33/69 (48%), Positives = 41/69 (60%), Gaps = 1/69 (1%)

Query  2   ELAARMGETLTQAVVVAVREQLARR-TGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           ELA R G T T A+  A+ E+L R   G T    L  EL AI  R A LP LDTR+ + I
Sbjct  16  ELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLLGELRAIRERVARLPELDTRSDEEI  75

Query  61  LGYDERGLP  69
           +G+DE G+P
Sbjct  76  VGFDEHGIP  84


>gi|254423155|ref|ZP_05036873.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
 gi|196190644|gb|EDX85608.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
Length=63

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 35/62 (57%), Gaps = 3/62 (4%)

Query  11  LTQAVVVAVREQLARRTGR---TRSISLREELAAIGRRCAALPVLDTRAADTILGYDERG  67
           +T+ V  A+++ L R       ++   L E L  I  RCAALP  D R+AD I GYDE G
Sbjct  1   MTETVKTALQQALFRHKTEQEGSKPRPLAERLNEIALRCAALPDCDKRSADDIFGYDEDG  60

Query  68  LP  69
           LP
Sbjct  61  LP  62


>gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita 
DSM 44233]
 gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita 
DSM 44233]
Length=84

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/68 (46%), Positives = 38/68 (56%), Gaps = 0/68 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           ELAA  GE+LT A   A+ E+L+R   R R+      L    RR     VLD R+ D I+
Sbjct  16  ELAAEAGESLTVATRRAIEERLSRLRARKRANDPDLGLDEFIRRGRERAVLDERSPDDII  75

Query  62  GYDERGLP  69
           GYDE GLP
Sbjct  76  GYDEHGLP  83


>gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti]
 gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=85

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 41/69 (60%), Gaps = 1/69 (1%)

Query  2   ELAARMGETLTQAVVVAVREQLARR-TGRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           ELA R G + T A+  A+ E+L R   G      L  EL AI +R A LP LD+R+ + I
Sbjct  16  ELARRQGISKTAAIHQALSERLHRMGHGEVSQDRLLGELRAIRQRIARLPELDSRSDEEI  75

Query  61  LGYDERGLP  69
           +GYDE G+P
Sbjct  76  IGYDEHGIP  84


>gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
 gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
Length=86

 Score = 48.5 bits (114),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 32/71 (46%), Positives = 41/71 (58%), Gaps = 2/71 (2%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISL--REELAAIGRRCAALPVLDTRAADT  59
           ELAA  GE++T A   A+ E+L R   + R+I     + +  I  R  A PVLD R  D 
Sbjct  16  ELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGIIARGRARPVLDARPVDE  75

Query  60  ILGYDERGLPA  70
           ILGYDE GLP+
Sbjct  76  ILGYDENGLPS  86


>gi|340776554|ref|ZP_08696497.1| protein transcription factor [Acetobacter aceti NBRC 14818]
Length=84

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 39/68 (58%), Gaps = 0/68 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           ELA   GE LT AV  A+RE+L R   R     + E L  IGRR AALP   +   D IL
Sbjct  16  ELARLTGENLTSAVTTALRERLDRERRRHARNDVAERLMTIGRRYAALPDGASTDPDAIL  75

Query  62  GYDERGLP  69
           GYDE G+P
Sbjct  76  GYDENGVP  83


>gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
 gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
Length=84

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 28/68 (42%), Positives = 39/68 (58%), Gaps = 0/68 (0%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTIL  61
           ELAA  GE++T A   A+ E+L R   R  + S   +L  +  R  + P LD R+A+ IL
Sbjct  16  ELAAATGESITVAARRAIEERLERVRARADAGSASVDLGDLIERARSRPDLDVRSAEEIL  75

Query  62  GYDERGLP  69
           GY + GLP
Sbjct  76  GYGDDGLP  83


>gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix transcription factor, Rv0623 family 
[Cyanobium sp. PCC 7001]
 gi|197625311|gb|EDY37870.1| probable ribbon-helix-helix transcription factor, Rv0623 family 
[Cyanobium sp. PCC 7001]
Length=89

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 32/74 (44%), Positives = 40/74 (55%), Gaps = 5/74 (6%)

Query  2   ELAARMGETLTQAVVVAVREQL-----ARRTGRTRSISLREELAAIGRRCAALPVLDTRA  56
           ELAA  G+T T AV+ A++E+L      +  G        E L AI  R AA P  D R 
Sbjct  16  ELAALSGQTKTDAVIQALKERLETLKRQQEDGGQARRRRLERLEAIALRAAARPQRDPRC  75

Query  57  ADTILGYDERGLPA  70
           A+ ILGYD  GLP+
Sbjct  76  AEEILGYDSSGLPS  89


>gi|153869461|ref|ZP_01999054.1| hypothetical protein BGP_1681 [Beggiatoa sp. PS]
 gi|152074052|gb|EDN70952.1| hypothetical protein BGP_1681 [Beggiatoa sp. PS]
Length=99

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 25/35 (72%), Gaps = 0/35 (0%)

Query  33  ISLREELAAIGRRCAALPVLDTRAADTILGYDERG  67
           + +  ++  I +RCAALP  D+R+ + ILGY+++G
Sbjct  62  LQIFHQVMEISKRCAALPTQDSRSENDILGYNDQG  96


>gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [Frankia sp. CcI3]
 gi|86565825|gb|ABD09634.1| Rv0623-like transcription factor [Frankia sp. CcI3]
Length=89

 Score = 39.3 bits (90),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 32/71 (46%), Positives = 39/71 (55%), Gaps = 5/71 (7%)

Query  2   ELAARMGETLTQAVVVAVREQLAR-RTGRTRSISLREELAAIGRR-CAALPVLDTRAADT  59
           ELA   GET+T AV+VAVRE+L R R  R         + A+GR+  AA+P       D 
Sbjct  22  ELAELTGETVTTAVLVAVRERLERMRADRDEGEQRAARIVALGRQTAAAVPPPGLSIEDL  81

Query  60  ILGYDERGLPA  70
              YDE GLPA
Sbjct  82  ---YDEHGLPA  89


>gi|282895550|ref|ZP_06303687.1| hypothetical protein CRD_00182 [Raphidiopsis brookii D9]
 gi|281199583|gb|EFA74446.1| hypothetical protein CRD_00182 [Raphidiopsis brookii D9]
Length=89

 Score = 38.9 bits (89),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 20/55 (37%), Positives = 30/55 (55%), Gaps = 3/55 (5%)

Query  16  VVAVREQLARRTGRTRSISLREELAAI---GRRCAALPVLDTRAADTILGYDERG  67
           ++++ E     T  +  +S  +  AAI    RRC  LP LD+R+ D I+GYD  G
Sbjct  32  LISLLENCRDNTENSLELSSDDRFAAIMNISRRCRTLPQLDSRSPDEIVGYDANG  86


>gi|339499338|ref|YP_004697373.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta 
caldaria DSM 7334]
 gi|338833687|gb|AEJ18865.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta 
caldaria DSM 7334]
Length=85

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 39/69 (57%), Gaps = 6/69 (8%)

Query  2   ELAARMGETLTQAVVVAVR--EQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT  59
           ELA   G+++T+ ++ A++  +  A   G  + + L+E    I R CA  P LD R  + 
Sbjct  15  ELATAEGKSMTETILEALQRLKTEAAGEGERKKVILKE----IARTCALAPDLDLRQPEK  70

Query  60  ILGYDERGL  68
           ILGYD+ G+
Sbjct  71  ILGYDDIGV  79


>gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycobacterium tuberculosis H37Rv]
 gi|15840008|ref|NP_335045.1| hypothetical protein MT0637 [Mycobacterium tuberculosis CDC1551]
 gi|31791790|ref|NP_854283.1| hypothetical protein Mb0624 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=81

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 5/70 (7%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-I  60
           ++A   GE+  +AV  AV E+LA    R RS  L   L AIG + A+    + +  D   
Sbjct  16  QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA  71

Query  61  LGYDERGLPA  70
           L YDERGLPA
Sbjct  72  LLYDERGLPA  81


>gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcription factor [Acidobacterium sp. 
MP5ACTX8]
 gi|298599417|gb|EFI55577.1| Rv0623 family protein transcription factor [Acidobacterium sp. 
MP5ACTX8]
Length=91

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query  3   LAARMGETLTQAVVVAVREQLARRT--GRTRSISLREELAAIGRRCAALPVLDTRAADTI  60
           LA+  GE++T+A+  A  E+L R    G+  S    EE+ A+ R     P+ +    D I
Sbjct  22  LASVTGESITEAIGAAAEERLIRFNAAGKNLSSPSVEEVLAMIRSFNLKPINEDLTDDEI  81

Query  61  LGYDERGL  68
           LGY   G 
Sbjct  82  LGYGPEGF  89


>gi|120402182|ref|YP_952011.1| transcription factor [Mycobacterium vanbaalenii PYR-1]
 gi|119955000|gb|ABM12005.1| Rv0623 family protein transcription factor [Mycobacterium vanbaalenii 
PYR-1]
Length=81

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 37/69 (54%), Gaps = 5/69 (7%)

Query  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-I  60
           +LA   GE+  QAV  AV+E+L+    R +   L E L A+GRR A      T+  D   
Sbjct  16  QLARLTGESQAQAVATAVQERLS----RVQQDDLAERLLALGRRTAQRMTSATKNLDHGE  71

Query  61  LGYDERGLP  69
           L YD+ GLP
Sbjct  72  LLYDDAGLP  80


>gi|284041785|ref|YP_003392125.1| hypothetical protein Cwoe_0314 [Conexibacter woesei DSM 14684]
 gi|283946006|gb|ADB48750.1| hypothetical protein Cwoe_0314 [Conexibacter woesei DSM 14684]
Length=72

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 17/28 (61%), Positives = 20/28 (72%), Gaps = 0/28 (0%)

Query  42  IGRRCAALPVLDTRAADTILGYDERGLP  69
           I RR A+  VLD R+ D ILGYD+ GLP
Sbjct  44  IVRRAASRRVLDPRSPDEILGYDDDGLP  71


>gi|326775306|ref|ZP_08234571.1| Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) [Streptomyces 
cf. griseus XylebKG-1]
 gi|326655639|gb|EGE40485.1| Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) [Streptomyces 
griseus XylebKG-1]
Length=396

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query  9   ETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAAD  58
           E L       VR  LA R+ RT+   LRE L AI   CA LP+L+T A D
Sbjct  28  EYLAAHAPAGVRWALAGRS-RTKLEGLRERLTAIAPGCAELPLLETDADD  76



Lambda     K      H
   0.322    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128245544896


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40