BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1741

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608879|ref|NP_216257.1|  hypothetical protein Rv1741 [Mycoba...   170    7e-41
gi|31792929|ref|NP_855422.1|  hypothetical protein Mb1770 [Mycoba...   168    3e-40
gi|308380165|ref|ZP_07669134.1|  hypothetical protein TMKG_02250 ...   111    4e-23
gi|15607764|ref|NP_215138.1|  hypothetical protein Rv0624 [Mycoba...  97.8    5e-19
gi|118472447|ref|YP_885674.1|  PilT domain-containing protein [My...  82.0    2e-14
gi|220919621|ref|YP_002494924.1|  PilT protein domain protein [Me...  63.5    9e-09
gi|92109698|ref|YP_571984.1|  PilT protein-like [Nitrobacter hamb...  60.1    9e-08
gi|90422855|ref|YP_531225.1|  PilT protein-like protein [Rhodopse...  56.6    1e-06
gi|153869463|ref|ZP_01999056.1|  conserved hypothetical protein [...  54.3    5e-06
gi|316934115|ref|YP_004109097.1|  PilT domain-containing protein ...  53.5    1e-05
gi|116254471|ref|YP_770307.1|  hypothetical protein pRL100005 [Rh...  53.1    1e-05
gi|241554096|ref|YP_002979309.1|  PilT protein domain protein [Rh...  52.8    1e-05
gi|227819246|ref|YP_002823217.1|  hypothetical protein NGR_b10110...  52.8    2e-05
gi|334321234|ref|YP_004557774.1|  PilT protein domain-containing ...  51.6    4e-05
gi|293980661|ref|YP_003543419.1|  hypothetical protein SJA_P2-001...  50.4    8e-05
gi|15964557|ref|NP_384910.1|  hypothetical protein SMc00900 [Sino...  49.3    2e-04
gi|318040907|ref|ZP_07972863.1|  hypothetical protein SCB01_04334...  48.1    4e-04
gi|318040914|ref|ZP_07972870.1|  hypothetical protein SCB01_04369...  47.0    0.001
gi|254424570|ref|ZP_05038288.1|  hypothetical protein S7335_4730 ...  46.6    0.001
gi|298529281|ref|ZP_07016684.1|  PilT protein domain protein [Des...  46.2    0.001
gi|84495502|ref|ZP_00994621.1|  hypothetical protein JNB_11889 [J...  43.9    0.007
gi|254431434|ref|ZP_05045137.1|  hypothetical protein CPCC7001_13...  43.9    0.008
gi|339499339|ref|YP_004697374.1|  PilT protein domain-containing ...  43.9    0.009
gi|153012021|ref|YP_001373233.1|  PilT domain-containing protein ...  43.5    0.009
gi|270208572|ref|YP_003329343.1|  hypothetical protein pSmeSM11ap...  42.7    0.015
gi|167648431|ref|YP_001686094.1|  PilT domain-containing protein ...  42.0    0.032
gi|296444876|ref|ZP_06886838.1|  PilT protein domain protein [Met...  40.4    0.083
gi|37522794|ref|NP_926171.1|  hypothetical protein glr3225 [Gloeo...  40.0    0.11 
gi|254419336|ref|ZP_05033060.1|  hypothetical protein BBAL3_1646 ...  40.0    0.12 
gi|120402183|ref|YP_952012.1|  PilT domain-containing protein [My...  38.5    0.35 
gi|84497913|ref|ZP_00996710.1|  hypothetical protein JNB_17538 [J...  38.1    0.41 
gi|192292981|ref|YP_001993586.1|  PilT protein domain-containing ...  37.7    0.53 
gi|39937202|ref|NP_949478.1|  PilT protein N-terminal [Rhodopseud...  37.7    0.54 
gi|325293169|ref|YP_004279033.1|  PilT domain-containing protein ...  37.4    0.75 
gi|87123252|ref|ZP_01079103.1|  hypothetical protein RS9917_05315...  37.0    0.99 
gi|154243676|ref|YP_001409249.1|  PilT domain-containing protein ...  37.0    1.0  
gi|299138782|ref|ZP_07031960.1|  PilT protein domain protein [Aci...  36.2    1.7  
gi|256824143|ref|YP_003148103.1|  hypothetical protein Ksed_02550...  36.2    1.7  
gi|240171116|ref|ZP_04749775.1|  PilT domain-containing protein [...  35.4    3.1  
gi|91975924|ref|YP_568583.1|  PilT protein-like protein [Rhodopse...  35.0    3.5  
gi|114328764|ref|YP_745921.1|  putative cytoplasmic protein [Gran...  34.7    4.4  
gi|316935649|ref|YP_004110631.1|  PilT domain-containing protein ...  33.9    7.3  
gi|335036413|ref|ZP_08529740.1|  PilT domain-containing protein [...  33.9    7.6  
gi|338822860|gb|EGP56828.1|  PilT domain-containing protein [Agro...  33.9    7.7  
gi|332305622|ref|YP_004433473.1|  flagellar hook-associated prote...  33.9    9.1  


>gi|15608879|ref|NP_216257.1| hypothetical protein Rv1741 [Mycobacterium tuberculosis H37Rv]
 gi|15841205|ref|NP_336242.1| hypothetical protein MT1783 [Mycobacterium tuberculosis CDC1551]
 gi|148661540|ref|YP_001283063.1| hypothetical protein MRA_1752 [Mycobacterium tuberculosis H37Ra]
 63 more sequence titles
 Length=82

 Score =  170 bits (430),  Expect = 7e-41, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS  60
           MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS
Sbjct  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS  60

Query  61  GQPLLYKGDDFACIDIRAVLAG  82
           GQPLLYKGDDFACIDIRAVLAG
Sbjct  61  GQPLLYKGDDFACIDIRAVLAG  82


>gi|31792929|ref|NP_855422.1| hypothetical protein Mb1770 [Mycobacterium bovis AF2122/97]
 gi|121637649|ref|YP_977872.1| hypothetical protein BCG_1780 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990124|ref|YP_002644811.1| hypothetical protein JTY_1755 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=82

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 81/82 (99%), Positives = 81/82 (99%), Gaps = 0/82 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS  60
           MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS
Sbjct  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS  60

Query  61  GQPLLYKGDDFACIDIRAVLAG  82
           GQPLLY GDDFACIDIRAVLAG
Sbjct  61  GQPLLYTGDDFACIDIRAVLAG  82


>gi|308380165|ref|ZP_07669134.1| hypothetical protein TMKG_02250 [Mycobacterium tuberculosis SUMu011]
 gi|308362396|gb|EFP51247.1| hypothetical protein TMKG_02250 [Mycobacterium tuberculosis SUMu011]
Length=330

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 54/58 (94%), Positives = 55/58 (95%), Gaps = 0/58 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPK  58
           MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG   P+
Sbjct  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGDVNPR  58


>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
 gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
 gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=131

 Score = 97.8 bits (242),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 59/128 (47%), Positives = 66/128 (52%), Gaps = 49/128 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE----  56
            MVIDTSALVAML+DEP+A+RFE AV ADH+ LMSTASY E A VIE RFGEPGGRE    
Sbjct  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60

Query  57   ---------------------------------------------PKVSGQPLLYKGDDF  71
                                                          K+SGQPLL+KG+DF
Sbjct  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120

Query  72   ACIDIRAV  79
               DI  V
Sbjct  121  QHTDIATV  128


>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129

 Score = 82.0 bits (201),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 55/128 (43%), Positives = 62/128 (49%), Gaps = 49/128 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE----  56
            MVIDTSALVA+L DEP+A+  E AVA D V  MSTASY E A VIE+RFGEPGGRE    
Sbjct  1    MVIDTSALVAILTDEPDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDLW  60

Query  57   ---------------------------------------------PKVSGQPLLYKGDDF  71
                                                          KVSGQPLL+KG+ F
Sbjct  61   LHRASVALVAVDADQADAARLAYRRYGKGRHRAGLNYGDCFSYALAKVSGQPLLFKGEAF  120

Query  72   ACIDIRAV  79
               D+ AV
Sbjct  121  RLTDVAAV  128


>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
 gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 44/127 (35%), Positives = 57/127 (45%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE----  56
            MVIDTSA+VA+  DEPEA  FE  +A D V L+S A+  E A V+ETR GE GG E    
Sbjct  1    MVIDTSAIVAIALDEPEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDLW  60

Query  57   ---------------------------------------------PKVSGQPLLYKGDDF  71
                                                           ++G+PLL+KG+DF
Sbjct  61   LHKAEVEIVAVEPEHADRARRAWRRYGKGRHSAGLNFGDCFSYALAALTGEPLLFKGNDF  120

Query  72   ACIDIRA  78
            +  D+RA
Sbjct  121  SQTDVRA  127


>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
 gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128

 Score = 60.1 bits (144),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 44/127 (35%), Positives = 56/127 (45%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG-------  53
            MVIDTS +VA+  +EP+A RF   +A D V L+S A+  E A VIE R GE G       
Sbjct  1    MVIDTSPIVAIFFNEPDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDLW  60

Query  54   ----------------------------GREP--------------KVSGQPLLYKGDDF  71
                                        GR P               +SG+PLLYKG+DF
Sbjct  61   LHKADVEIVPVTAEHADQARRAWRRYGKGRHPAGLNFGDCFSYALAALSGEPLLYKGNDF  120

Query  72   ACIDIRA  78
            +  DI+A
Sbjct  121  SQTDIKA  127


>gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopseudomonas palustris BisB18]
 gi|90104869|gb|ABD86906.1| PilT protein-like [Rhodopseudomonas palustris BisB18]
Length=132

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 41/125 (33%), Positives = 53/125 (43%), Gaps = 49/125 (39%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKV-  59
            MVIDTSA+VA+  +E +A   EI +A D V L+S A+  E   V+ETR GE GGRE  + 
Sbjct  1    MVIDTSAIVAIALNEADASDIEIRIADDPVRLISAATVVEATMVLETRLGETGGREFDLR  60

Query  60   ------------------------------------------------SGQPLLYKGDDF  71
                                                             G+PLL+KG+DF
Sbjct  61   LLKIGAEIVAGDAEQADAARRAWRRYGKGHHAAALNYGDCFSYALAVTRGEPLLFKGEDF  120

Query  72   ACIDI  76
            A  DI
Sbjct  121  AQTDI  125


>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131

 Score = 54.3 bits (129),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (67%), Gaps = 0/56 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE  56
           MVIDTSAL+A+L  EPEA++F  A+ ++   L+S  S  E   VIE R G PG +E
Sbjct  1   MVIDTSALIAILLREPEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQE  56


>gi|316934115|ref|YP_004109097.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315601829|gb|ADU44364.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=126

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 39/125 (32%), Positives = 53/125 (43%), Gaps = 49/125 (39%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKV-  59
            MVIDTS +VA+  DEP+A   E  +A D V L+S A+  E   V+ET+ G+ GGRE  + 
Sbjct  1    MVIDTSVIVAIALDEPDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDLW  60

Query  60   ------------------------------------------------SGQPLLYKGDDF  71
                                                             G+PLLYKG+DF
Sbjct  61   LLKIGAEIVPVDAEQMEAARRAWRRTGKGRHAADLNYGDCFAHALAITRGEPLLYKGEDF  120

Query  72   ACIDI  76
            A ++I
Sbjct  121  AKMEI  125


>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum 
bv. viciae 3841]
Length=128

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 40/127 (32%), Positives = 54/127 (43%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR-----  55
            M+IDTSALVA+L  EPEA  F   +    +  +S A+Y E++ V+E + G  G R     
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADAF  60

Query  56   --------EP------------------------------------KVSGQPLLYKGDDF  71
                    EP                                    K SG+PLL+KG+DF
Sbjct  61   FRRAGIIIEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF  120

Query  72   ACIDIRA  78
            A  D+RA
Sbjct  121  AQTDVRA  127


>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=128

 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 40/127 (32%), Positives = 54/127 (43%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR-----  55
            M+IDTSALVA+L  EPEA  F   +    +  +S A+Y E++ V+E + G  G R     
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAF  60

Query  56   --------EP------------------------------------KVSGQPLLYKGDDF  71
                    EP                                    K SG+PLL+KG+DF
Sbjct  61   FRRAGIIIEPVTLEHCELARQAFLDFGQGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF  120

Query  72   ACIDIRA  78
            A  D+RA
Sbjct  121  AQTDVRA  127


>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
 gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 40/127 (32%), Positives = 53/127 (42%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG-------  53
            MVIDTSA++A+  +EPEA+ +E  V       +S A+  E+A VIE R GE G       
Sbjct  1    MVIDTSAILAIAFNEPEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDLW  60

Query  54   ----------------------------GREP--------------KVSGQPLLYKGDDF  71
                                        GR P              +   +PLLYKGDDF
Sbjct  61   LYKAGVEVVAVDAEQIAVARRAWRSYGKGRHPAGLNYGDCFSYALARTRNEPLLYKGDDF  120

Query  72   ACIDIRA  78
            +  DI+A
Sbjct  121  SRTDIQA  127


>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 38/128 (30%), Positives = 54/128 (43%), Gaps = 49/128 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR-----  55
            M++DTSALVA+L  EP+A RF   +       +S ASY E++ V+E++ G  G R     
Sbjct  1    MIVDTSALVAILYREPQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEAF  60

Query  56   --------EP------------------------------------KVSGQPLLYKGDDF  71
                    EP                                    K SG+PLL+KG+DF
Sbjct  61   FRRAGIIVEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF  120

Query  72   ACIDIRAV  79
            +  D+  V
Sbjct  121  SQTDVLTV  128


>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
 gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 40/127 (32%), Positives = 52/127 (41%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR-----  55
            M++DTSALVA+L  EPEA  F  A+       +S ASY E++ VIE + G  G R     
Sbjct  1    MILDTSALVAILYREPEAATFAQAIHDADACRISVASYVELSMVIERQLGPEGMRQTEAF  60

Query  56   --------EP------------------------------------KVSGQPLLYKGDDF  71
                    EP                                    K + +PLL+KG+DF
Sbjct  61   FRRAGITIEPVTLDHGELARQAFLDFGKGRHKAGLNFGDCFSYALAKATDEPLLFKGNDF  120

Query  72   ACIDIRA  78
            A  DI A
Sbjct  121  ALTDIEA  127


>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
 gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
 gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
 gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 37/81 (46%), Positives = 46/81 (57%), Gaps = 8/81 (9%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS  60
           MVIDTSA+ A+  +E EA  F   +A D V L+S A+  E A VIETR GE  G E  + 
Sbjct  1   MVIDTSAIAAIAFNEQEAGSFREKIADDPVRLISAATALEAAMVIETRLGEAAGAELDL-  59

Query  61  GQPLLYKGDDFACIDIRAVLA  81
               LYK    A ++I AV A
Sbjct  60  ---WLYK----ANVEIVAVTA  73


>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 28/54 (52%), Positives = 36/54 (67%), Gaps = 2/54 (3%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVA-ADHVWLMSTASYPEMATVIETRFGEPG  53
           MVID SA++A+L +EPE Q F  A+A ADH  L S A   E++ VIE R+G  G
Sbjct  1   MVIDPSAVLAILQNEPERQAFNAAIASADHCAL-SAALLVELSIVIEARYGSDG  53


>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 28/54 (52%), Positives = 36/54 (67%), Gaps = 2/54 (3%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVA-ADHVWLMSTASYPEMATVIETRFGEPG  53
           MVID SA++A+L +EPE   F  A+A ADH  L S AS  E++ VIE R+G  G
Sbjct  1   MVIDPSAVLAILQNEPERPAFNAAIASADHCAL-SAASLVELSIVIEARYGSDG  53


>gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
 gi|196192059|gb|EDX87023.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
Length=131

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/48 (55%), Positives = 32/48 (67%), Gaps = 0/48 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR  48
           MVIDTSA+VA+L DEPE   F  A+AA    LMS ++  E   VIE+R
Sbjct  1   MVIDTSAIVAVLFDEPERTDFVYAIAAASTRLMSASTLLECYLVIESR  48


>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=130

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 33/56 (59%), Gaps = 0/56 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE  56
           MV DTSA++A+L  EPEA      +A     +MS+ S  E   V+E R GE GGRE
Sbjct  1   MVSDTSAIIAILTGEPEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRE  56


>gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
 gi|84384995|gb|EAQ00875.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
Length=132

 Score = 43.9 bits (102),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 40/131 (31%), Positives = 56/131 (43%), Gaps = 51/131 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAV--AADHVWLMSTASYPEMATVIETRFG--------  50
            MV+DTSALVA++  EP+A+ F+ A+  A     +MS  +  E A V+E R G        
Sbjct  1    MVVDTSALVAIVLGEPDAESFKDALRAAPPGSLVMSPVTAVEAAMVVEARQGPDAARELE  60

Query  51   ----------EP-----------------GGREP--------------KVSGQPLLYKGD  69
                      EP                  GR P              + +G+ LL+KGD
Sbjct  61   GLIATLFLRIEPLDGDQSAAAIEGWRRFGKGRHPASLNLGDLFPYALARTTGEALLFKGD  120

Query  70   DFACIDIRAVL  80
            DFA  D+R+ L
Sbjct  121  DFARTDVRSAL  131


>gi|254431434|ref|ZP_05045137.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
 gi|197625887|gb|EDY38446.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
Length=133

 Score = 43.9 bits (102),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 44/133 (34%), Positives = 55/133 (42%), Gaps = 53/133 (39%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIET-------------  47
            MVID SALVA+L +EPE + F  A+AA  V  +S AS  E++ VIE              
Sbjct  1    MVIDPSALVAILLNEPERRAFIEAIAAAEVCWLSAASLVELSIVIEVKLGPDGLDDLDLF  60

Query  48   ------------------------RFGEPGGREP--------------KVSGQPLLYKGD  69
                                    RFG+  GR P              +V   PLL+KG 
Sbjct  61   LATAGVETVAFDHDQALIARAAFQRFGK--GRHPAGLNLGDCCAYALARVREAPLLFKGR  118

Query  70   DFACIDIRAVLAG  82
            DF   DIR+ L G
Sbjct  119  DFVHTDIRSALTG  131


>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria 
DSM 7334]
 gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131

 Score = 43.9 bits (102),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 37/127 (30%), Positives = 51/127 (41%), Gaps = 49/127 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG-------  53
            MV+D+SA++A+L  E +A  +  A+ +    L+S  ++ E+A VIE R G  G       
Sbjct  1    MVVDSSAILAILLGESDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHSL  60

Query  54   ----------------------------GREP--------------KVSGQPLLYKGDDF  71
                                        GR P              K   QPLLYKGDDF
Sbjct  61   MTHSGIEVLPLDASQAEIALAAWRTYGKGRHPAALNLGDCAAYALAKTLNQPLLYKGDDF  120

Query  72   ACIDIRA  78
            +  DI A
Sbjct  121  SKTDIVA  127


>gi|153012021|ref|YP_001373233.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563909|gb|ABS17404.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=128

 Score = 43.5 bits (101),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 23/51 (46%), Positives = 33/51 (65%), Gaps = 0/51 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGE  51
           MVIDTSA+V +L +EP+A+R E A+ AD + L+      E   V+ +R GE
Sbjct  1   MVIDTSAIVTILRNEPQAERLERAIVADPIRLVPATCVFEARMVMVSRRGE  51


>gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap045 [Sinorhizobium meliloti]
 gi|76880846|gb|ABA56016.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=128

 Score = 42.7 bits (99),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 33/51 (65%), Gaps = 0/51 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGE  51
           MVIDTSA+VA+L +EPEA + E A+ A+ V L+      E   V+ +R GE
Sbjct  1   MVIDTSAIVAILRNEPEAAKLERALVANPVRLVPATCVLEARMVLVSRRGE  51


>gi|167648431|ref|YP_001686094.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167350861|gb|ABZ73596.1| PilT protein domain protein [Caulobacter sp. K31]
Length=131

 Score = 42.0 bits (97),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 40/129 (32%), Positives = 51/129 (40%), Gaps = 50/129 (38%)

Query  1    MVIDTSALVAMLNDEPEAQRF-EIAVAADHVWLMSTASYPEMATVIETRFGEPG------  53
            +VIDTSALVA+  +EPE   F E+  AAD++ L+S  +Y E   V+  R   P       
Sbjct  3    LVIDTSALVAIATEEPECDSFIEVLEAADNL-LISPMNYVEAGVVLVGRRFFPSRETFDE  61

Query  54   ----------------------------GREP--------------KVSGQPLLYKGDDF  71
                                        GR P              K    PLLYKGDDF
Sbjct  62   WLSNYRIQVAAEPVIDALALDAYLSFGKGRHPAKLNLADCFAYALAKQLDAPLLYKGDDF  121

Query  72   ACIDIRAVL  80
               D+R+ L
Sbjct  122  PLTDVRSAL  130


>gi|296444876|ref|ZP_06886838.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
 gi|296257544|gb|EFH04609.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
Length=134

 Score = 40.4 bits (93),  Expect = 0.083, Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 0/50 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG  50
           +V+D+SAL+A+L DEPE + F   + ++   +MS  +  E A V+  R G
Sbjct  2   IVVDSSALIAILFDEPEGRAFTTILTSEERCVMSAVNVHETACVLRARHG  51


>gi|37522794|ref|NP_926171.1| hypothetical protein glr3225 [Gloeobacter violaceus PCC 7421]
 gi|35213796|dbj|BAC91166.1| glr3225 [Gloeobacter violaceus PCC 7421]
Length=125

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 0/50 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG  50
           + IDTSA+VA+L  EPEA+RF  A+  D   L+S AS  E+   ++ + G
Sbjct  2   IAIDTSAIVAILLGEPEAERFARAIEQDEEPLLSAASLVELFLAMKHKQG  51


>gi|254419336|ref|ZP_05033060.1| hypothetical protein BBAL3_1646 [Brevundimonas sp. BAL3]
 gi|196185513|gb|EDX80489.1| hypothetical protein BBAL3_1646 [Brevundimonas sp. BAL3]
Length=129

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 0/50 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG  50
           MV+DTSA VA++  EPEA  F+  + +     +S A++ E+A V+ +R G
Sbjct  1   MVVDTSAFVAIVLREPEAAAFDERIRSATTRRVSVATWAELAAVLTSRLG  50


>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 23/60 (39%), Positives = 36/60 (60%), Gaps = 6/60 (10%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS  60
           M+ D+SA++A+L DE +A  +  A+AA  V  +S ASY E   V++ +      R+P VS
Sbjct  1   MIADSSAIIAILRDEDDAVDYARALAAADVRRLSAASYLECGIVLDAQ------RDPVVS  54


>gi|84497913|ref|ZP_00996710.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
 gi|84381413|gb|EAP97296.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
Length=132

 Score = 38.1 bits (87),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 31/127 (25%), Positives = 49/127 (39%), Gaps = 50/127 (39%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR------------  48
            M++D+SA+VA+   EPE  RF   +AA    L+S A+Y E   V++ +            
Sbjct  1    MIVDSSAIVAIHEGEPERARFLDVLAAARGSLISAATYVECGVVLDLKRPEQPTNRLDEL  60

Query  49   -------------------------FGEPGGREPKV-------------SGQPLLYKGDD  70
                                     +G   G   K+             + +PLL+KG+D
Sbjct  61   LDEFDIKVVALTPEQARVARRAHRRYGRGSGHPAKLNLGDCFSYALAMSTDEPLLFKGED  120

Query  71   FACIDIR  77
            F   D+R
Sbjct  121  FTHTDVR  127


>gi|192292981|ref|YP_001993586.1| PilT protein domain-containing protein [Rhodopseudomonas palustris 
TIE-1]
 gi|192286730|gb|ACF03111.1| PilT protein domain protein [Rhodopseudomonas palustris TIE-1]
Length=134

 Score = 37.7 bits (86),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 18/46 (40%), Positives = 31/46 (68%), Gaps = 0/46 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE  46
           +VIDTSA++A+  +EPEA +F   +A+D   ++S+ +  E A V+ 
Sbjct  2   IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLR  47


>gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseudomonas palustris CGA009]
 gi|39651060|emb|CAE29583.1| PilT protein, N-terminal [Rhodopseudomonas palustris CGA009]
Length=134

 Score = 37.7 bits (86),  Expect = 0.54, Method: Compositional matrix adjust.
 Identities = 18/46 (40%), Positives = 31/46 (68%), Gaps = 0/46 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE  46
           +VIDTSA++A+  +EPEA +F   +A+D   ++S+ +  E A V+ 
Sbjct  2   IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLR  47


>gi|325293169|ref|YP_004279033.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
 gi|325061022|gb|ADY64713.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
Length=127

 Score = 37.4 bits (85),  Expect = 0.75, Method: Compositional matrix adjust.
 Identities = 35/126 (28%), Positives = 46/126 (37%), Gaps = 46/126 (36%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR------------  48
            MVIDTSAL+A+L DEP A    +A+  D   L+S  +  E     + R            
Sbjct  2    MVIDTSALLAILLDEPTADACAMALDTDEPLLISAGTLAEAVIAAQRRGRSRELEMLIEG  61

Query  49   ---------------------------------FGEPGGRE-PKVSGQPLLYKGDDFACI  74
                                             FG+    E  K  G PLLY G+DF+  
Sbjct  62   LSVEIKPVTAKSIRGISEAYRIWGKGIHPAGLNFGDCFAYELAKAEGCPLLYVGNDFSQT  121

Query  75   DIRAVL  80
            DI  +L
Sbjct  122  DISGLL  127


>gi|87123252|ref|ZP_01079103.1| hypothetical protein RS9917_05315 [Synechococcus sp. RS9917]
 gi|86168972|gb|EAQ70228.1| hypothetical protein RS9917_05315 [Synechococcus sp. RS9917]
Length=130

 Score = 37.0 bits (84),  Expect = 0.99, Method: Compositional matrix adjust.
 Identities = 24/53 (46%), Positives = 34/53 (65%), Gaps = 0/53 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG  53
           MVIDTSAL+A+L  EPEA  F   ++   + L+STA+  E + V+E + G  G
Sbjct  1   MVIDTSALMAILKAEPEAADFLRCLSRSELSLLSTATRLETSLVVEGQLGAAG  53


>gi|154243676|ref|YP_001409249.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162798|gb|ABS70013.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=128

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 22/51 (44%), Positives = 29/51 (57%), Gaps = 0/51 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGE  51
           MVIDTSA+VA+L +EPEA   E  +    V L+      E   V+ +R GE
Sbjct  1   MVIDTSAIVAILRNEPEADALERLIVGAPVRLVPATCVFEARMVLVSRRGE  51


>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 33/57 (58%), Gaps = 6/57 (10%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREP  57
           MVID+SALVA+L  EP+A  +  A+  D   L+S A+  E + V+  R      REP
Sbjct  1   MVIDSSALVAILLAEPDASIYISAILNDVTRLISAATLVETSIVMIRR------REP  51


>gi|256824143|ref|YP_003148103.1| hypothetical protein Ksed_02550 [Kytococcus sedentarius DSM 20547]
 gi|256687536|gb|ACV05338.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 
20547]
Length=130

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 22/52 (43%), Positives = 31/52 (60%), Gaps = 1/52 (1%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEP  52
           M++D+SALVA+L  EPE Q    A+       M+ ASY E+  V++ R G P
Sbjct  1   MIVDSSALVAILLAEPERQALLEAIQQAPEAAMTAASYLEVGMVVDGR-GNP  51


>gi|240171116|ref|ZP_04749775.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
 gi|296165342|ref|ZP_06847883.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295899233|gb|EFG78698.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=140

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 20/51 (40%), Positives = 32/51 (63%), Gaps = 1/51 (1%)

Query  1   MVIDTSALVAMLNDE-PEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG  50
           ++ID+SA+VA++  E P  ++   A+AAD   +MSTA+  E   V+  R G
Sbjct  3   LIIDSSAIVALIQGEDPYTEQIAAAIAADPSPVMSTANAAECLIVLTNRHG  53


>gi|91975924|ref|YP_568583.1| PilT protein-like protein [Rhodopseudomonas palustris BisB5]
 gi|91682380|gb|ABE38682.1| PilT protein-like [Rhodopseudomonas palustris BisB5]
Length=133

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 18/46 (40%), Positives = 28/46 (61%), Gaps = 0/46 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE  46
           +V+DTS ++A+   E EA RF   +AAD   +MS A+  E + V+ 
Sbjct  2   IVLDTSVVIAIFRKEEEATRFAHRIAADDQPIMSAANLIEASIVLR  47


>gi|114328764|ref|YP_745921.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316938|gb|ABI62998.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1]
Length=141

 Score = 34.7 bits (78),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 19/54 (36%), Positives = 33/54 (62%), Gaps = 0/54 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGG  54
           M++DTSAL+A++  EP+  R+  A+ A     MS A++ E + ++E + G   G
Sbjct  1   MILDTSALLAIVLGEPDGPRYLEALVAAERPRMSAANWLEASMMVEEKGGRLAG  54


>gi|316935649|ref|YP_004110631.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315603363|gb|ADU45898.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=134

 Score = 33.9 bits (76),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 17/46 (37%), Positives = 29/46 (64%), Gaps = 0/46 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE  46
           +VIDTSA++A+   E EA +F   +A+D   ++S+ +  E A V+ 
Sbjct  2   IVIDTSAIIAIFRKEQEAAQFARLIASDDQPVLSSGNLLETAIVLR  47


>gi|335036413|ref|ZP_08529740.1| PilT domain-containing protein [Agrobacterium sp. ATCC 31749]
 gi|333792304|gb|EGL63674.1| PilT domain-containing protein [Agrobacterium sp. ATCC 31749]
Length=127

 Score = 33.9 bits (76),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 37/126 (30%), Positives = 49/126 (39%), Gaps = 46/126 (36%)

Query  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR------------  48
            +VIDTSAL+A+L +EP A     A+A D   L+S  +  E  TV + R            
Sbjct  2    IVIDTSALMAILLEEPGANACAAALATDEPLLISAGTLAEAMTVAQRRNRSRAFEMLIEA  61

Query  49   ---------------------------------FGEPGGRE-PKVSGQPLLYKGDDFACI  74
                                             FG+    E  K  G PLLY G+DF+  
Sbjct  62   LSVEIRHVTPKSVHGISEAYSMWGKGVHPAGLNFGDCFAYELAKTEGCPLLYVGNDFSQT  121

Query  75   DIRAVL  80
            DI +VL
Sbjct  122  DIASVL  127


>gi|338822860|gb|EGP56828.1| PilT domain-containing protein [Agrobacterium tumefaciens F2]
Length=127

 Score = 33.9 bits (76),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 20/48 (42%), Positives = 27/48 (57%), Gaps = 0/48 (0%)

Query  1   MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR  48
           +VIDTSAL+A+L DEP A     A+  D   L+S  +  E   V + R
Sbjct  2   IVIDTSALMAILLDEPTADACTAALETDEPLLISAGTLAEAMIVAQRR  49


>gi|332305622|ref|YP_004433473.1| flagellar hook-associated protein 3 [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172951|gb|AEE22205.1| flagellar hook-associated protein 3 [Glaciecola sp. 4H-3-7+YE-5]
Length=408

 Score = 33.9 bits (76),  Expect = 9.1, Method: Composition-based stats.
 Identities = 17/58 (30%), Positives = 33/58 (57%), Gaps = 1/58 (1%)

Query  14   DEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVSGQPLLYKGDDF  71
            D+  +Q ++  VAA++ + +S ++  E  T+     G   G +P +SG+P  +KG +F
Sbjct  217  DQFHSQNYDPVVAANNEFQISISA-AEQVTITNVGTGAVVGTQPFISGEPFEFKGQEF  273



Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127967590486


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40