BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1741
Length=82
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608879|ref|NP_216257.1| hypothetical protein Rv1741 [Mycoba... 170 7e-41
gi|31792929|ref|NP_855422.1| hypothetical protein Mb1770 [Mycoba... 168 3e-40
gi|308380165|ref|ZP_07669134.1| hypothetical protein TMKG_02250 ... 111 4e-23
gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycoba... 97.8 5e-19
gi|118472447|ref|YP_885674.1| PilT domain-containing protein [My... 82.0 2e-14
gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Me... 63.5 9e-09
gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamb... 60.1 9e-08
gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopse... 56.6 1e-06
gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [... 54.3 5e-06
gi|316934115|ref|YP_004109097.1| PilT domain-containing protein ... 53.5 1e-05
gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rh... 53.1 1e-05
gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rh... 52.8 1e-05
gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110... 52.8 2e-05
gi|334321234|ref|YP_004557774.1| PilT protein domain-containing ... 51.6 4e-05
gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-001... 50.4 8e-05
gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sino... 49.3 2e-04
gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334... 48.1 4e-04
gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369... 47.0 0.001
gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 ... 46.6 0.001
gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Des... 46.2 0.001
gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [J... 43.9 0.007
gi|254431434|ref|ZP_05045137.1| hypothetical protein CPCC7001_13... 43.9 0.008
gi|339499339|ref|YP_004697374.1| PilT protein domain-containing ... 43.9 0.009
gi|153012021|ref|YP_001373233.1| PilT domain-containing protein ... 43.5 0.009
gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap... 42.7 0.015
gi|167648431|ref|YP_001686094.1| PilT domain-containing protein ... 42.0 0.032
gi|296444876|ref|ZP_06886838.1| PilT protein domain protein [Met... 40.4 0.083
gi|37522794|ref|NP_926171.1| hypothetical protein glr3225 [Gloeo... 40.0 0.11
gi|254419336|ref|ZP_05033060.1| hypothetical protein BBAL3_1646 ... 40.0 0.12
gi|120402183|ref|YP_952012.1| PilT domain-containing protein [My... 38.5 0.35
gi|84497913|ref|ZP_00996710.1| hypothetical protein JNB_17538 [J... 38.1 0.41
gi|192292981|ref|YP_001993586.1| PilT protein domain-containing ... 37.7 0.53
gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseud... 37.7 0.54
gi|325293169|ref|YP_004279033.1| PilT domain-containing protein ... 37.4 0.75
gi|87123252|ref|ZP_01079103.1| hypothetical protein RS9917_05315... 37.0 0.99
gi|154243676|ref|YP_001409249.1| PilT domain-containing protein ... 37.0 1.0
gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Aci... 36.2 1.7
gi|256824143|ref|YP_003148103.1| hypothetical protein Ksed_02550... 36.2 1.7
gi|240171116|ref|ZP_04749775.1| PilT domain-containing protein [... 35.4 3.1
gi|91975924|ref|YP_568583.1| PilT protein-like protein [Rhodopse... 35.0 3.5
gi|114328764|ref|YP_745921.1| putative cytoplasmic protein [Gran... 34.7 4.4
gi|316935649|ref|YP_004110631.1| PilT domain-containing protein ... 33.9 7.3
gi|335036413|ref|ZP_08529740.1| PilT domain-containing protein [... 33.9 7.6
gi|338822860|gb|EGP56828.1| PilT domain-containing protein [Agro... 33.9 7.7
gi|332305622|ref|YP_004433473.1| flagellar hook-associated prote... 33.9 9.1
>gi|15608879|ref|NP_216257.1| hypothetical protein Rv1741 [Mycobacterium tuberculosis H37Rv]
gi|15841205|ref|NP_336242.1| hypothetical protein MT1783 [Mycobacterium tuberculosis CDC1551]
gi|148661540|ref|YP_001283063.1| hypothetical protein MRA_1752 [Mycobacterium tuberculosis H37Ra]
63 more sequence titles
Length=82
Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS 60
MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS
Sbjct 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS 60
Query 61 GQPLLYKGDDFACIDIRAVLAG 82
GQPLLYKGDDFACIDIRAVLAG
Sbjct 61 GQPLLYKGDDFACIDIRAVLAG 82
>gi|31792929|ref|NP_855422.1| hypothetical protein Mb1770 [Mycobacterium bovis AF2122/97]
gi|121637649|ref|YP_977872.1| hypothetical protein BCG_1780 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990124|ref|YP_002644811.1| hypothetical protein JTY_1755 [Mycobacterium bovis BCG str. Tokyo
172]
8 more sequence titles
Length=82
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/82 (99%), Positives = 81/82 (99%), Gaps = 0/82 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS 60
MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS
Sbjct 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS 60
Query 61 GQPLLYKGDDFACIDIRAVLAG 82
GQPLLY GDDFACIDIRAVLAG
Sbjct 61 GQPLLYTGDDFACIDIRAVLAG 82
>gi|308380165|ref|ZP_07669134.1| hypothetical protein TMKG_02250 [Mycobacterium tuberculosis SUMu011]
gi|308362396|gb|EFP51247.1| hypothetical protein TMKG_02250 [Mycobacterium tuberculosis SUMu011]
Length=330
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/58 (94%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPK 58
MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG P+
Sbjct 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGDVNPR 58
>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=131
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/128 (47%), Positives = 66/128 (52%), Gaps = 49/128 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE---- 56
MVIDTSALVAML+DEP+A+RFE AV ADH+ LMSTASY E A VIE RFGEPGGRE
Sbjct 1 MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW 60
Query 57 ---------------------------------------------PKVSGQPLLYKGDDF 71
K+SGQPLL+KG+DF
Sbjct 61 LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF 120
Query 72 ACIDIRAV 79
DI V
Sbjct 121 QHTDIATV 128
>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str.
MC2 155]
gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/128 (43%), Positives = 62/128 (49%), Gaps = 49/128 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE---- 56
MVIDTSALVA+L DEP+A+ E AVA D V MSTASY E A VIE+RFGEPGGRE
Sbjct 1 MVIDTSALVAILTDEPDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDLW 60
Query 57 ---------------------------------------------PKVSGQPLLYKGDDF 71
KVSGQPLL+KG+ F
Sbjct 61 LHRASVALVAVDADQADAARLAYRRYGKGRHRAGLNYGDCFSYALAKVSGQPLLFKGEAF 120
Query 72 ACIDIRAV 79
D+ AV
Sbjct 121 RLTDVAAV 128
>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/127 (35%), Positives = 57/127 (45%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE---- 56
MVIDTSA+VA+ DEPEA FE +A D V L+S A+ E A V+ETR GE GG E
Sbjct 1 MVIDTSAIVAIALDEPEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDLW 60
Query 57 ---------------------------------------------PKVSGQPLLYKGDDF 71
++G+PLL+KG+DF
Sbjct 61 LHKAEVEIVAVEPEHADRARRAWRRYGKGRHSAGLNFGDCFSYALAALTGEPLLFKGNDF 120
Query 72 ACIDIRA 78
+ D+RA
Sbjct 121 SQTDVRA 127
>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/127 (35%), Positives = 56/127 (45%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG------- 53
MVIDTS +VA+ +EP+A RF +A D V L+S A+ E A VIE R GE G
Sbjct 1 MVIDTSPIVAIFFNEPDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDLW 60
Query 54 ----------------------------GREP--------------KVSGQPLLYKGDDF 71
GR P +SG+PLLYKG+DF
Sbjct 61 LHKADVEIVPVTAEHADQARRAWRRYGKGRHPAGLNFGDCFSYALAALSGEPLLYKGNDF 120
Query 72 ACIDIRA 78
+ DI+A
Sbjct 121 SQTDIKA 127
>gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopseudomonas palustris BisB18]
gi|90104869|gb|ABD86906.1| PilT protein-like [Rhodopseudomonas palustris BisB18]
Length=132
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/125 (33%), Positives = 53/125 (43%), Gaps = 49/125 (39%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKV- 59
MVIDTSA+VA+ +E +A EI +A D V L+S A+ E V+ETR GE GGRE +
Sbjct 1 MVIDTSAIVAIALNEADASDIEIRIADDPVRLISAATVVEATMVLETRLGETGGREFDLR 60
Query 60 ------------------------------------------------SGQPLLYKGDDF 71
G+PLL+KG+DF
Sbjct 61 LLKIGAEIVAGDAEQADAARRAWRRYGKGHHAAALNYGDCFSYALAVTRGEPLLFKGEDF 120
Query 72 ACIDI 76
A DI
Sbjct 121 AQTDI 125
>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (67%), Gaps = 0/56 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE 56
MVIDTSAL+A+L EPEA++F A+ ++ L+S S E VIE R G PG +E
Sbjct 1 MVIDTSALIAILLREPEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQE 56
>gi|316934115|ref|YP_004109097.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
gi|315601829|gb|ADU44364.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=126
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (32%), Positives = 53/125 (43%), Gaps = 49/125 (39%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKV- 59
MVIDTS +VA+ DEP+A E +A D V L+S A+ E V+ET+ G+ GGRE +
Sbjct 1 MVIDTSVIVAIALDEPDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDLW 60
Query 60 ------------------------------------------------SGQPLLYKGDDF 71
G+PLLYKG+DF
Sbjct 61 LLKIGAEIVPVDAEQMEAARRAWRRTGKGRHAADLNYGDCFAHALAITRGEPLLYKGEDF 120
Query 72 ACIDI 76
A ++I
Sbjct 121 AKMEI 125
>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae
3841]
gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum
bv. viciae 3841]
Length=128
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 54/127 (43%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR----- 55
M+IDTSALVA+L EPEA F + + +S A+Y E++ V+E + G G R
Sbjct 1 MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADAF 60
Query 56 --------EP------------------------------------KVSGQPLLYKGDDF 71
EP K SG+PLL+KG+DF
Sbjct 61 FRRAGIIIEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF 120
Query 72 ACIDIRA 78
A D+RA
Sbjct 121 AQTDVRA 127
>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length=128
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 54/127 (43%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR----- 55
M+IDTSALVA+L EPEA F + + +S A+Y E++ V+E + G G R
Sbjct 1 MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAF 60
Query 56 --------EP------------------------------------KVSGQPLLYKGDDF 71
EP K SG+PLL+KG+DF
Sbjct 61 FRRAGIIIEPVTLEHCELARQAFLDFGQGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF 120
Query 72 ACIDIRA 78
A D+RA
Sbjct 121 AQTDVRA 127
>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 53/127 (42%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG------- 53
MVIDTSA++A+ +EPEA+ +E V +S A+ E+A VIE R GE G
Sbjct 1 MVIDTSAILAIAFNEPEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDLW 60
Query 54 ----------------------------GREP--------------KVSGQPLLYKGDDF 71
GR P + +PLLYKGDDF
Sbjct 61 LYKAGVEVVAVDAEQIAVARRAWRSYGKGRHPAGLNYGDCFSYALARTRNEPLLYKGDDF 120
Query 72 ACIDIRA 78
+ DI+A
Sbjct 121 SRTDIQA 127
>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti
AK83]
gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/128 (30%), Positives = 54/128 (43%), Gaps = 49/128 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR----- 55
M++DTSALVA+L EP+A RF + +S ASY E++ V+E++ G G R
Sbjct 1 MIVDTSALVAILYREPQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEAF 60
Query 56 --------EP------------------------------------KVSGQPLLYKGDDF 71
EP K SG+PLL+KG+DF
Sbjct 61 FRRAGIIVEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF 120
Query 72 ACIDIRAV 79
+ D+ V
Sbjct 121 SQTDVLTV 128
>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 52/127 (41%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGR----- 55
M++DTSALVA+L EPEA F A+ +S ASY E++ VIE + G G R
Sbjct 1 MILDTSALVAILYREPEAATFAQAIHDADACRISVASYVELSMVIERQLGPEGMRQTEAF 60
Query 56 --------EP------------------------------------KVSGQPLLYKGDDF 71
EP K + +PLL+KG+DF
Sbjct 61 FRRAGITIEPVTLDHGELARQAFLDFGKGRHKAGLNFGDCFSYALAKATDEPLLFKGNDF 120
Query 72 ACIDIRA 78
A DI A
Sbjct 121 ALTDIEA 127
>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti
AK83]
gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/81 (46%), Positives = 46/81 (57%), Gaps = 8/81 (9%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS 60
MVIDTSA+ A+ +E EA F +A D V L+S A+ E A VIETR GE G E +
Sbjct 1 MVIDTSAIAAIAFNEQEAGSFREKIADDPVRLISAATALEAAMVIETRLGEAAGAELDL- 59
Query 61 GQPLLYKGDDFACIDIRAVLA 81
LYK A ++I AV A
Sbjct 60 ---WLYK----ANVEIVAVTA 73
>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/54 (52%), Positives = 36/54 (67%), Gaps = 2/54 (3%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVA-ADHVWLMSTASYPEMATVIETRFGEPG 53
MVID SA++A+L +EPE Q F A+A ADH L S A E++ VIE R+G G
Sbjct 1 MVIDPSAVLAILQNEPERQAFNAAIASADHCAL-SAALLVELSIVIEARYGSDG 53
>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/54 (52%), Positives = 36/54 (67%), Gaps = 2/54 (3%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVA-ADHVWLMSTASYPEMATVIETRFGEPG 53
MVID SA++A+L +EPE F A+A ADH L S AS E++ VIE R+G G
Sbjct 1 MVIDPSAVLAILQNEPERPAFNAAIASADHCAL-SAASLVELSIVIEARYGSDG 53
>gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
gi|196192059|gb|EDX87023.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
Length=131
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/48 (55%), Positives = 32/48 (67%), Gaps = 0/48 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR 48
MVIDTSA+VA+L DEPE F A+AA LMS ++ E VIE+R
Sbjct 1 MVIDTSAIVAVLFDEPERTDFVYAIAAASTRLMSASTLLECYLVIESR 48
>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=130
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (47%), Positives = 33/56 (59%), Gaps = 0/56 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE 56
MV DTSA++A+L EPEA +A +MS+ S E V+E R GE GGRE
Sbjct 1 MVSDTSAIIAILTGEPEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRE 56
>gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
gi|84384995|gb|EAQ00875.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
Length=132
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/131 (31%), Positives = 56/131 (43%), Gaps = 51/131 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAV--AADHVWLMSTASYPEMATVIETRFG-------- 50
MV+DTSALVA++ EP+A+ F+ A+ A +MS + E A V+E R G
Sbjct 1 MVVDTSALVAIVLGEPDAESFKDALRAAPPGSLVMSPVTAVEAAMVVEARQGPDAARELE 60
Query 51 ----------EP-----------------GGREP--------------KVSGQPLLYKGD 69
EP GR P + +G+ LL+KGD
Sbjct 61 GLIATLFLRIEPLDGDQSAAAIEGWRRFGKGRHPASLNLGDLFPYALARTTGEALLFKGD 120
Query 70 DFACIDIRAVL 80
DFA D+R+ L
Sbjct 121 DFARTDVRSAL 131
>gi|254431434|ref|ZP_05045137.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
gi|197625887|gb|EDY38446.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
Length=133
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/133 (34%), Positives = 55/133 (42%), Gaps = 53/133 (39%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIET------------- 47
MVID SALVA+L +EPE + F A+AA V +S AS E++ VIE
Sbjct 1 MVIDPSALVAILLNEPERRAFIEAIAAAEVCWLSAASLVELSIVIEVKLGPDGLDDLDLF 60
Query 48 ------------------------RFGEPGGREP--------------KVSGQPLLYKGD 69
RFG+ GR P +V PLL+KG
Sbjct 61 LATAGVETVAFDHDQALIARAAFQRFGK--GRHPAGLNLGDCCAYALARVREAPLLFKGR 118
Query 70 DFACIDIRAVLAG 82
DF DIR+ L G
Sbjct 119 DFVHTDIRSALTG 131
>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria
DSM 7334]
gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/127 (30%), Positives = 51/127 (41%), Gaps = 49/127 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG------- 53
MV+D+SA++A+L E +A + A+ + L+S ++ E+A VIE R G G
Sbjct 1 MVVDSSAILAILLGESDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHSL 60
Query 54 ----------------------------GREP--------------KVSGQPLLYKGDDF 71
GR P K QPLLYKGDDF
Sbjct 61 MTHSGIEVLPLDASQAEIALAAWRTYGKGRHPAALNLGDCAAYALAKTLNQPLLYKGDDF 120
Query 72 ACIDIRA 78
+ DI A
Sbjct 121 SKTDIVA 127
>gi|153012021|ref|YP_001373233.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
gi|151563909|gb|ABS17404.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=128
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/51 (46%), Positives = 33/51 (65%), Gaps = 0/51 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGE 51
MVIDTSA+V +L +EP+A+R E A+ AD + L+ E V+ +R GE
Sbjct 1 MVIDTSAIVTILRNEPQAERLERAIVADPIRLVPATCVFEARMVMVSRRGE 51
>gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap045 [Sinorhizobium meliloti]
gi|76880846|gb|ABA56016.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=128
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/51 (48%), Positives = 33/51 (65%), Gaps = 0/51 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGE 51
MVIDTSA+VA+L +EPEA + E A+ A+ V L+ E V+ +R GE
Sbjct 1 MVIDTSAIVAILRNEPEAAKLERALVANPVRLVPATCVLEARMVLVSRRGE 51
>gi|167648431|ref|YP_001686094.1| PilT domain-containing protein [Caulobacter sp. K31]
gi|167350861|gb|ABZ73596.1| PilT protein domain protein [Caulobacter sp. K31]
Length=131
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/129 (32%), Positives = 51/129 (40%), Gaps = 50/129 (38%)
Query 1 MVIDTSALVAMLNDEPEAQRF-EIAVAADHVWLMSTASYPEMATVIETRFGEPG------ 53
+VIDTSALVA+ +EPE F E+ AAD++ L+S +Y E V+ R P
Sbjct 3 LVIDTSALVAIATEEPECDSFIEVLEAADNL-LISPMNYVEAGVVLVGRRFFPSRETFDE 61
Query 54 ----------------------------GREP--------------KVSGQPLLYKGDDF 71
GR P K PLLYKGDDF
Sbjct 62 WLSNYRIQVAAEPVIDALALDAYLSFGKGRHPAKLNLADCFAYALAKQLDAPLLYKGDDF 121
Query 72 ACIDIRAVL 80
D+R+ L
Sbjct 122 PLTDVRSAL 130
>gi|296444876|ref|ZP_06886838.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
gi|296257544|gb|EFH04609.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
Length=134
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 0/50 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG 50
+V+D+SAL+A+L DEPE + F + ++ +MS + E A V+ R G
Sbjct 2 IVVDSSALIAILFDEPEGRAFTTILTSEERCVMSAVNVHETACVLRARHG 51
>gi|37522794|ref|NP_926171.1| hypothetical protein glr3225 [Gloeobacter violaceus PCC 7421]
gi|35213796|dbj|BAC91166.1| glr3225 [Gloeobacter violaceus PCC 7421]
Length=125
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 0/50 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG 50
+ IDTSA+VA+L EPEA+RF A+ D L+S AS E+ ++ + G
Sbjct 2 IAIDTSAIVAILLGEPEAERFARAIEQDEEPLLSAASLVELFLAMKHKQG 51
>gi|254419336|ref|ZP_05033060.1| hypothetical protein BBAL3_1646 [Brevundimonas sp. BAL3]
gi|196185513|gb|EDX80489.1| hypothetical protein BBAL3_1646 [Brevundimonas sp. BAL3]
Length=129
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 0/50 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG 50
MV+DTSA VA++ EPEA F+ + + +S A++ E+A V+ +R G
Sbjct 1 MVVDTSAFVAIVLREPEAAAFDERIRSATTRRVSVATWAELAAVLTSRLG 50
>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/60 (39%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVS 60
M+ D+SA++A+L DE +A + A+AA V +S ASY E V++ + R+P VS
Sbjct 1 MIADSSAIIAILRDEDDAVDYARALAAADVRRLSAASYLECGIVLDAQ------RDPVVS 54
>gi|84497913|ref|ZP_00996710.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
gi|84381413|gb|EAP97296.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
Length=132
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/127 (25%), Positives = 49/127 (39%), Gaps = 50/127 (39%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR------------ 48
M++D+SA+VA+ EPE RF +AA L+S A+Y E V++ +
Sbjct 1 MIVDSSAIVAIHEGEPERARFLDVLAAARGSLISAATYVECGVVLDLKRPEQPTNRLDEL 60
Query 49 -------------------------FGEPGGREPKV-------------SGQPLLYKGDD 70
+G G K+ + +PLL+KG+D
Sbjct 61 LDEFDIKVVALTPEQARVARRAHRRYGRGSGHPAKLNLGDCFSYALAMSTDEPLLFKGED 120
Query 71 FACIDIR 77
F D+R
Sbjct 121 FTHTDVR 127
>gi|192292981|ref|YP_001993586.1| PilT protein domain-containing protein [Rhodopseudomonas palustris
TIE-1]
gi|192286730|gb|ACF03111.1| PilT protein domain protein [Rhodopseudomonas palustris TIE-1]
Length=134
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/46 (40%), Positives = 31/46 (68%), Gaps = 0/46 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE 46
+VIDTSA++A+ +EPEA +F +A+D ++S+ + E A V+
Sbjct 2 IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLR 47
>gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseudomonas palustris CGA009]
gi|39651060|emb|CAE29583.1| PilT protein, N-terminal [Rhodopseudomonas palustris CGA009]
Length=134
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/46 (40%), Positives = 31/46 (68%), Gaps = 0/46 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE 46
+VIDTSA++A+ +EPEA +F +A+D ++S+ + E A V+
Sbjct 2 IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLR 47
>gi|325293169|ref|YP_004279033.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
gi|325061022|gb|ADY64713.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
Length=127
Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/126 (28%), Positives = 46/126 (37%), Gaps = 46/126 (36%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR------------ 48
MVIDTSAL+A+L DEP A +A+ D L+S + E + R
Sbjct 2 MVIDTSALLAILLDEPTADACAMALDTDEPLLISAGTLAEAVIAAQRRGRSRELEMLIEG 61
Query 49 ---------------------------------FGEPGGRE-PKVSGQPLLYKGDDFACI 74
FG+ E K G PLLY G+DF+
Sbjct 62 LSVEIKPVTAKSIRGISEAYRIWGKGIHPAGLNFGDCFAYELAKAEGCPLLYVGNDFSQT 121
Query 75 DIRAVL 80
DI +L
Sbjct 122 DISGLL 127
>gi|87123252|ref|ZP_01079103.1| hypothetical protein RS9917_05315 [Synechococcus sp. RS9917]
gi|86168972|gb|EAQ70228.1| hypothetical protein RS9917_05315 [Synechococcus sp. RS9917]
Length=130
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/53 (46%), Positives = 34/53 (65%), Gaps = 0/53 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPG 53
MVIDTSAL+A+L EPEA F ++ + L+STA+ E + V+E + G G
Sbjct 1 MVIDTSALMAILKAEPEAADFLRCLSRSELSLLSTATRLETSLVVEGQLGAAG 53
>gi|154243676|ref|YP_001409249.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154162798|gb|ABS70013.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=128
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/51 (44%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGE 51
MVIDTSA+VA+L +EPEA E + V L+ E V+ +R GE
Sbjct 1 MVIDTSAIVAILRNEPEADALERLIVGAPVRLVPATCVFEARMVLVSRRGE 51
>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/57 (43%), Positives = 33/57 (58%), Gaps = 6/57 (10%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREP 57
MVID+SALVA+L EP+A + A+ D L+S A+ E + V+ R REP
Sbjct 1 MVIDSSALVAILLAEPDASIYISAILNDVTRLISAATLVETSIVMIRR------REP 51
>gi|256824143|ref|YP_003148103.1| hypothetical protein Ksed_02550 [Kytococcus sedentarius DSM 20547]
gi|256687536|gb|ACV05338.1| uncharacterized conserved protein [Kytococcus sedentarius DSM
20547]
Length=130
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/52 (43%), Positives = 31/52 (60%), Gaps = 1/52 (1%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEP 52
M++D+SALVA+L EPE Q A+ M+ ASY E+ V++ R G P
Sbjct 1 MIVDSSALVAILLAEPERQALLEAIQQAPEAAMTAASYLEVGMVVDGR-GNP 51
>gi|240171116|ref|ZP_04749775.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
gi|296165342|ref|ZP_06847883.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899233|gb|EFG78698.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=140
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/51 (40%), Positives = 32/51 (63%), Gaps = 1/51 (1%)
Query 1 MVIDTSALVAMLNDE-PEAQRFEIAVAADHVWLMSTASYPEMATVIETRFG 50
++ID+SA+VA++ E P ++ A+AAD +MSTA+ E V+ R G
Sbjct 3 LIIDSSAIVALIQGEDPYTEQIAAAIAADPSPVMSTANAAECLIVLTNRHG 53
>gi|91975924|ref|YP_568583.1| PilT protein-like protein [Rhodopseudomonas palustris BisB5]
gi|91682380|gb|ABE38682.1| PilT protein-like [Rhodopseudomonas palustris BisB5]
Length=133
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/46 (40%), Positives = 28/46 (61%), Gaps = 0/46 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE 46
+V+DTS ++A+ E EA RF +AAD +MS A+ E + V+
Sbjct 2 IVLDTSVVIAIFRKEEEATRFAHRIAADDQPIMSAANLIEASIVLR 47
>gi|114328764|ref|YP_745921.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1]
gi|114316938|gb|ABI62998.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1]
Length=141
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/54 (36%), Positives = 33/54 (62%), Gaps = 0/54 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGG 54
M++DTSAL+A++ EP+ R+ A+ A MS A++ E + ++E + G G
Sbjct 1 MILDTSALLAIVLGEPDGPRYLEALVAAERPRMSAANWLEASMMVEEKGGRLAG 54
>gi|316935649|ref|YP_004110631.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
gi|315603363|gb|ADU45898.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=134
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/46 (37%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIE 46
+VIDTSA++A+ E EA +F +A+D ++S+ + E A V+
Sbjct 2 IVIDTSAIIAIFRKEQEAAQFARLIASDDQPVLSSGNLLETAIVLR 47
>gi|335036413|ref|ZP_08529740.1| PilT domain-containing protein [Agrobacterium sp. ATCC 31749]
gi|333792304|gb|EGL63674.1| PilT domain-containing protein [Agrobacterium sp. ATCC 31749]
Length=127
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/126 (30%), Positives = 49/126 (39%), Gaps = 46/126 (36%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR------------ 48
+VIDTSAL+A+L +EP A A+A D L+S + E TV + R
Sbjct 2 IVIDTSALMAILLEEPGANACAAALATDEPLLISAGTLAEAMTVAQRRNRSRAFEMLIEA 61
Query 49 ---------------------------------FGEPGGRE-PKVSGQPLLYKGDDFACI 74
FG+ E K G PLLY G+DF+
Sbjct 62 LSVEIRHVTPKSVHGISEAYSMWGKGVHPAGLNFGDCFAYELAKTEGCPLLYVGNDFSQT 121
Query 75 DIRAVL 80
DI +VL
Sbjct 122 DIASVL 127
>gi|338822860|gb|EGP56828.1| PilT domain-containing protein [Agrobacterium tumefaciens F2]
Length=127
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/48 (42%), Positives = 27/48 (57%), Gaps = 0/48 (0%)
Query 1 MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETR 48
+VIDTSAL+A+L DEP A A+ D L+S + E V + R
Sbjct 2 IVIDTSALMAILLDEPTADACTAALETDEPLLISAGTLAEAMIVAQRR 49
>gi|332305622|ref|YP_004433473.1| flagellar hook-associated protein 3 [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172951|gb|AEE22205.1| flagellar hook-associated protein 3 [Glaciecola sp. 4H-3-7+YE-5]
Length=408
Score = 33.9 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 17/58 (30%), Positives = 33/58 (57%), Gaps = 1/58 (1%)
Query 14 DEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVSGQPLLYKGDDF 71
D+ +Q ++ VAA++ + +S ++ E T+ G G +P +SG+P +KG +F
Sbjct 217 DQFHSQNYDPVVAANNEFQISISA-AEQVTITNVGTGAVVGTQPFISGEPFEFKGQEF 273
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127967590486
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40