BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1761c

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608899|ref|NP_216277.1|  hypothetical protein Rv1761c [Mycob...   253    9e-66
gi|340626771|ref|YP_004745223.1|  hypothetical protein MCAN_17771...   251    3e-65
gi|289574436|ref|ZP_06454663.1|  hypothetical exported protein [M...   250    4e-65
gi|219689176|pdb|2K3M|A  Chain A, Rv1761c                              248    2e-64
gi|240171225|ref|ZP_04749884.1|  hypothetical protein MkanA1_1807...   214    5e-54
gi|118618488|ref|YP_906820.1|  hypothetical protein MUL_3111 [Myc...   168    2e-40
gi|183982646|ref|YP_001850937.1|  hypothetical protein MMAR_2636 ...   166    8e-40
gi|296164739|ref|ZP_06847303.1|  conserved hypothetical protein [...   166    1e-39
gi|148257261|ref|YP_001241846.1|  delta-1-pyrroline-5-carboxylate...  35.8    2.4  
gi|110677975|ref|YP_680982.1|  type I secretion target domain-con...  35.4    2.5  
gi|52222874|gb|AAU34215.1|  two component sensor kinase MppV [Str...  35.4    3.2  
gi|163857754|ref|YP_001632052.1|  hypothetical protein Bpet3441 [...  35.0    3.8  
gi|301770405|ref|XP_002920603.1|  PREDICTED: LOW QUALITY PROTEIN:...  34.3    5.7  


>gi|15608899|ref|NP_216277.1| hypothetical protein Rv1761c [Mycobacterium tuberculosis H37Rv]
 gi|15841230|ref|NP_336267.1| hypothetical protein MT1810 [Mycobacterium tuberculosis CDC1551]
 gi|31792951|ref|NP_855444.1| hypothetical protein Mb1792c [Mycobacterium bovis AF2122/97]
 43 more sequence titles
 Length=127

 Score =  253 bits (645),  Expect = 9e-66, Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY
Sbjct  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG
Sbjct  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120

Query  121  TGTDYRF  127
            TGTDYRF
Sbjct  121  TGTDYRF  127


>gi|340626771|ref|YP_004745223.1| hypothetical protein MCAN_17771 [Mycobacterium canettii CIPT 
140010059]
 gi|340004961|emb|CCC44109.1| hypothetical exported protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score =  251 bits (640),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 126/127 (99%), Positives = 126/127 (99%), Gaps = 0/127 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTP RRGFFRSNPERIQIGDWRY
Sbjct  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPVRRGFFRSNPERIQIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG
Sbjct  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120

Query  121  TGTDYRF  127
            TGTDYRF
Sbjct  121  TGTDYRF  127


>gi|289574436|ref|ZP_06454663.1| hypothetical exported protein [Mycobacterium tuberculosis K85]
 gi|289538867|gb|EFD43445.1| hypothetical exported protein [Mycobacterium tuberculosis K85]
Length=127

 Score =  250 bits (639),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 126/127 (99%), Positives = 126/127 (99%), Gaps = 0/127 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY
Sbjct  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EVA DGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG
Sbjct  61   EVAQDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120

Query  121  TGTDYRF  127
            TGTDYRF
Sbjct  121  TGTDYRF  127


>gi|219689176|pdb|2K3M|A Chain A, Rv1761c
Length=151

 Score =  248 bits (634),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 124/127 (98%), Positives = 124/127 (98%), Gaps = 0/127 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            MSDFDTERVSRAVAAALVGPGGVALVVKV AGLPGVIHTPARRGFFR NPERIQIGDWRY
Sbjct  25   MSDFDTERVSRAVAAALVGPGGVALVVKVCAGLPGVIHTPARRGFFRCNPERIQIGDWRY  84

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIV RYGATVIPNINAAIEVLG
Sbjct  85   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVCRYGATVIPNINAAIEVLG  144

Query  121  TGTDYRF  127
            TGTDYRF
Sbjct  145  TGTDYRF  151


>gi|240171225|ref|ZP_04749884.1| hypothetical protein MkanA1_18071 [Mycobacterium kansasii ATCC 
12478]
Length=127

 Score =  214 bits (544),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 104/127 (82%), Positives = 113/127 (89%), Gaps = 0/127 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            M+ FD E+VSR + AAL GPGGVALVV VFA LPGVIHT ARRG FRSNPERIQIGDWRY
Sbjct  1    MTHFDAEQVSRTIGAALAGPGGVALVVNVFANLPGVIHTAARRGLFRSNPERIQIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EVAHDGRLLAAHMVNGIVIAED L A+AVGPH++RALGQIVSRYG TVIPNINAA+E+LG
Sbjct  61   EVAHDGRLLAAHMVNGIVIAEDILAADAVGPHVSRALGQIVSRYGPTVIPNINAAVEILG  120

Query  121  TGTDYRF  127
            T T YR+
Sbjct  121  TSTGYRY  127


>gi|118618488|ref|YP_906820.1| hypothetical protein MUL_3111 [Mycobacterium ulcerans Agy99]
 gi|118570598|gb|ABL05349.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=127

 Score =  168 bits (426),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 82/121 (68%), Positives = 97/121 (81%), Gaps = 0/121 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            M+ +D +RVS AV AAL GPGGV +VVKVF  +PGV+ TPARRGFFRS PERI IGDWRY
Sbjct  1    MTGYDQQRVSDAVGAALAGPGGVGMVVKVFCAVPGVVLTPARRGFFRSEPERILIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EV  DGRL A+H+VNGIV+AE  L A AVGPH+ARAL Q+VS YG T+ P I+AA+E+L 
Sbjct  61   EVTSDGRLSASHLVNGIVLAEQVLAAGAVGPHIARALAQLVSHYGPTIQPGIDAALEMLE  120

Query  121  T  121
            T
Sbjct  121  T  121


>gi|183982646|ref|YP_001850937.1| hypothetical protein MMAR_2636 [Mycobacterium marinum M]
 gi|183175972|gb|ACC41082.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=127

 Score =  166 bits (421),  Expect = 8e-40, Method: Compositional matrix adjust.
 Identities = 81/121 (67%), Positives = 96/121 (80%), Gaps = 0/121 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            M+ +D +RVS AV AAL GPGGV +VVKVF  +PGV+ TPARRGFFRS PERI IGDWRY
Sbjct  1    MTGYDQQRVSDAVGAALAGPGGVGMVVKVFCAVPGVVLTPARRGFFRSEPERILIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EV  DGRL A+H+VNGIV+AE  L A  VGPH+ARAL Q+VS YG T+ P I+AA+E+L 
Sbjct  61   EVTSDGRLSASHLVNGIVLAEQVLAAGEVGPHIARALAQLVSHYGPTIQPGIDAALEMLE  120

Query  121  T  121
            T
Sbjct  121  T  121


>gi|296164739|ref|ZP_06847303.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899910|gb|EFG79352.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=126

 Score =  166 bits (420),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 79/126 (63%), Positives = 99/126 (79%), Gaps = 0/126 (0%)

Query  1    MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRY  60
            M+  D ERV  AV  AL GPGGV +V++VF G+PGV+  PARRGF RS PER+QIGDWRY
Sbjct  1    MASLDHERVGHAVGTALSGPGGVGMVLRVFCGVPGVVFHPARRGFLRSQPERVQIGDWRY  60

Query  61   EVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLG  120
            EV  DGRL AAH+V+GIV++E+ L A AVGPH+ARALGQ+V  YG T++PNI+AA++VL 
Sbjct  61   EVTADGRLSAAHLVSGIVLSEEILAAGAVGPHIARALGQLVGSYGPTIVPNIDAALDVLE  120

Query  121  TGTDYR  126
             G+  R
Sbjct  121  AGSGPR  126


>gi|148257261|ref|YP_001241846.1| delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase 
[Bradyrhizobium sp. BTAi1]
 gi|146409434|gb|ABQ37940.1| L-proline dehydrogenase [Bradyrhizobium sp. BTAi1]
Length=1226

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 34/106 (33%), Positives = 49/106 (47%), Gaps = 6/106 (5%)

Query  16   ALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRYEVAHDGRLLAAHMVN  75
            AL    GVAL+    A L  V  T  R    R   ++I  GDWR  + H   LL      
Sbjct  91   ALSSQEGVALMCLAEA-LLRVPDTATRDALIR---DKIATGDWRAHIGHSPSLLVNAATW  146

Query  76   GIVIAEDALIAEAVGPHLARALGQIVSRYGATVI-PNINAAIEVLG  120
            G+++    L A A    LA AL ++++R G  +I   +  A+ +LG
Sbjct  147  GLIVT-GKLTAAASEDSLASALTRLIARGGEPIIRQGVTLAMRLLG  191


>gi|110677975|ref|YP_680982.1| type I secretion target domain-containing protein [Roseobacter 
denitrificans OCh 114]
 gi|109454091|gb|ABG30296.1| type I secretion target domain protein, putative [Roseobacter 
denitrificans OCh 114]
Length=1021

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 20/76 (27%), Positives = 34/76 (45%), Gaps = 0/76 (0%)

Query  37   IHTPARRGFFRSNPERIQIGDWRYEVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARA  96
            + + +   F RS+P  I+ GDW +     G   AA  ++G+ +  D+      G +    
Sbjct  453  LQSDSGNTFLRSDPGTIEAGDWSHVAVSFGPEGAALFLDGVQVDTDSYTGGLAGNNEPWT  512

Query  97   LGQIVSRYGATVIPNI  112
            LG   +R G  V  N+
Sbjct  513  LGASQNRSGDGVATNL  528


>gi|52222874|gb|AAU34215.1| two component sensor kinase MppV [Streptomyces hygroscopicus]
Length=390

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 22/64 (35%), Positives = 34/64 (54%), Gaps = 1/64 (1%)

Query  57   DWRYEVAHDGRLLAAHMVNGIVI-AEDALIAEAVGPHLARALGQIVSRYGATVIPNINAA  115
            + R EVA D     AH V GIV+ A+ A ++E  GP   RAL Q + + G   + +++  
Sbjct  178  EQRLEVARDLHDFVAHEVTGIVLEAQAAQVSEDAGPEEHRALLQRIEKAGLRALDSMDQT  237

Query  116  IEVL  119
            +  L
Sbjct  238  VTTL  241


>gi|163857754|ref|YP_001632052.1| hypothetical protein Bpet3441 [Bordetella petrii DSM 12804]
 gi|163261482|emb|CAP43784.1| unnamed protein product [Bordetella petrii]
Length=822

 Score = 35.0 bits (79),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 19/47 (41%), Positives = 27/47 (58%), Gaps = 2/47 (4%)

Query  56   GDWRYEVAHDGRLLAAHMVNGI--VIAEDALIAEAVGPHLARALGQI  100
            GDW YEV +DG  + A + +G   +   +     A  PHLARA+GQ+
Sbjct  234  GDWLYEVKYDGYRILARLEDGKARLYTRNGHDWTARLPHLARAIGQL  280


>gi|301770405|ref|XP_002920603.1| PREDICTED: LOW QUALITY PROTEIN: DALR anticodon-binding domain-containing 
protein 3-like [Ailuropoda melanoleuca]
Length=508

 Score = 34.3 bits (77),  Expect = 5.7, Method: Compositional matrix adjust.
 Identities = 44/127 (35%), Positives = 55/127 (44%), Gaps = 23/127 (18%)

Query  7    ERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFF----RSNPERIQIGDWRYEV  62
            ERV RAVA  L GPG VA V++   GL  V+H PA RG       S    + + D     
Sbjct  58   ERVVRAVAG-LQGPG-VAPVLRCTLGLRVVLHCPALRGALGALRLSQLRAVLVAD-----  110

Query  63   AHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRY-GATVIPNI----NAAIE  117
             H  R L AH       A   L+     PH+   L Q+   +  A+  PNI    N A+ 
Sbjct  111  -HLARALRAHG------ASVRLVPAVRDPHMPTFLQQLCVDWPSASQRPNIEALRNLALA  163

Query  118  VLGTGTD  124
            VL    D
Sbjct  164  VLSPARD  170



Lambda     K      H
   0.324    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129319095676


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40