BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1772 Length=103 Score E Sequences producing significant alignments: (Bits) Value gi|15608910|ref|NP_216288.1| hypothetical protein Rv1772 [Mycoba... 207 3e-52 gi|254231962|ref|ZP_04925289.1| hypothetical protein TBCG_01728 ... 190 6e-47 gi|41407590|ref|NP_960426.1| hypothetical protein MAP1492 [Mycob... 123 1e-26 gi|296164759|ref|ZP_06847322.1| conserved hypothetical protein [... 122 2e-26 gi|254818856|ref|ZP_05223857.1| ANTAR domain-containing protein ... 122 2e-26 gi|342861324|ref|ZP_08717972.1| ANTAR domain-containing protein ... 72.4 2e-11 gi|111025210|ref|YP_707630.1| hypothetical protein RHA1_ro08428 ... 52.0 3e-05 gi|111017353|ref|YP_700325.1| hypothetical protein RHA1_ro00331 ... 51.6 4e-05 gi|111025180|ref|YP_707600.1| hypothetical protein RHA1_ro08398 ... 50.1 1e-04 gi|226359893|ref|YP_002777671.1| hypothetical protein ROP_04790 ... 47.4 6e-04 gi|226349667|ref|YP_002776781.1| hypothetical protein ROP_pROB01... 45.8 0.002 gi|296165881|ref|ZP_06848363.1| conserved hypothetical protein [... 44.3 0.006 gi|226359565|ref|YP_002777343.1| hypothetical protein ROP_01510 ... 43.9 0.007 gi|108800451|ref|YP_640648.1| ANTAR [Mycobacterium sp. MCS] >gi|... 41.6 0.035 gi|240169285|ref|ZP_04747944.1| hypothetical protein MkanA1_0822... 41.2 0.053 gi|111019498|ref|YP_702470.1| hypothetical protein RHA1_ro02507 ... 41.2 0.057 gi|271964599|ref|YP_003338795.1| hypothetical protein Sros_3104 ... 40.8 0.074 gi|284988709|ref|YP_003407263.1| ANTAR domain-containing protein... 40.4 0.088 gi|111025140|ref|YP_707560.1| hypothetical protein RHA1_ro08358 ... 40.0 0.11 gi|297564118|ref|YP_003683091.1| ANTAR domain protein with unkno... 40.0 0.11 gi|226359697|ref|YP_002777475.1| hypothetical protein ROP_02830 ... 39.3 0.19 gi|111017187|ref|YP_700159.1| hypothetical protein RHA1_ro00165 ... 38.5 0.32 gi|120406282|ref|YP_956111.1| response regulator receiver/ANTAR ... 37.7 0.53 gi|337765988|emb|CCB74699.1| conserved protein of unknown functi... 37.7 0.59 gi|334335600|ref|YP_004540752.1| PAS fold-3 domain protein [Isop... 37.7 0.63 gi|326780907|ref|ZP_08240172.1| ANTAR domain protein [Streptomyc... 35.8 2.1 gi|182440244|ref|YP_001827963.1| hypothetical protein SGR_6451 [... 35.8 2.3 gi|72160697|ref|YP_288354.1| hypothetical protein Tfu_0293 [Ther... 35.4 2.5 gi|302865097|ref|YP_003833734.1| ANTAR domain-containing protein... 35.4 2.9 gi|29831174|ref|NP_825808.1| hypothetical protein SAV_4631 [Stre... 35.4 3.0 gi|226360937|ref|YP_002778715.1| hypothetical protein ROP_15230 ... 35.4 3.1 gi|291442917|ref|ZP_06582307.1| ANTAR domain-containing protein ... 35.0 3.3 gi|239985976|ref|ZP_04706640.1| hypothetical protein SrosN1_0158... 35.0 3.5 gi|226361249|ref|YP_002779027.1| hypothetical protein ROP_18350 ... 35.0 3.5 gi|333022809|ref|ZP_08450873.1| hypothetical protein STTU_0313 [... 35.0 3.9 gi|302865099|ref|YP_003833736.1| ANTAR domain-containing protein... 35.0 3.9 gi|340527545|gb|AEK42750.1| hypothetical protein RAM_21350 [Amyc... 34.7 4.3 gi|300786078|ref|YP_003766369.1| hypothetical protein AMED_4192 ... 34.7 4.4 gi|226304768|ref|YP_002764726.1| hypothetical protein RER_12790 ... 34.7 5.1 gi|111017117|ref|YP_700089.1| hypothetical protein RHA1_ro00095 ... 34.7 5.1 gi|229492400|ref|ZP_04386207.1| sensor histidine kinase [Rhodoco... 34.7 5.3 gi|229492506|ref|ZP_04386309.1| hypothetical protein RHOER0001_5... 34.3 5.6 gi|300788388|ref|YP_003768679.1| hypothetical protein AMED_6547 ... 34.3 5.9 gi|325964486|ref|YP_004242392.1| response regulator with antiter... 34.3 6.0 gi|226303720|ref|YP_002763678.1| hypothetical protein RER_02310 ... 34.3 6.0 gi|300786082|ref|YP_003766373.1| two-component system response r... 34.3 6.1 gi|297199937|ref|ZP_06917334.1| response regulator receiver and ... 33.9 7.3 gi|284992035|ref|YP_003410589.1| ANTAR domain-containing protein... 33.9 7.5 >gi|15608910|ref|NP_216288.1| hypothetical protein Rv1772 [Mycobacterium tuberculosis H37Rv] gi|31792961|ref|NP_855454.1| hypothetical protein Mb1801 [Mycobacterium bovis AF2122/97] gi|148661580|ref|YP_001283103.1| hypothetical protein MRA_1788 [Mycobacterium tuberculosis H37Ra] 51 more sequence titles Length=103 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%) Query 1 LGSTGGSQPMTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRL 60 +GSTGGSQPMTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRL Sbjct 1 MGSTGGSQPMTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRL 60 Query 61 PVFEIAWALVHLAVEGSTPCRSFVDAQSAARREWGQLFAHAAA 103 PVFEIAWALVHLAVEGSTPCRSFVDAQSAARREWGQLFAHAAA Sbjct 61 PVFEIAWALVHLAVEGSTPCRSFVDAQSAARREWGQLFAHAAA 103 >gi|254231962|ref|ZP_04925289.1| hypothetical protein TBCG_01728 [Mycobacterium tuberculosis C] gi|308231935|ref|ZP_07414318.2| hypothetical protein TMAG_03989 [Mycobacterium tuberculosis SUMu001] gi|308369522|ref|ZP_07418114.2| hypothetical protein TMBG_00309 [Mycobacterium tuberculosis SUMu002] 19 more sequence titles Length=94 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%) Query 10 MTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWAL 69 MTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWAL Sbjct 1 MTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWAL 60 Query 70 VHLAVEGSTPCRSFVDAQSAARREWGQLFAHAAA 103 VHLAVEGSTPCRSFVDAQSAARREWGQLFAHAAA Sbjct 61 VHLAVEGSTPCRSFVDAQSAARREWGQLFAHAAA 94 >gi|41407590|ref|NP_960426.1| hypothetical protein MAP1492 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464469|ref|YP_882130.1| ANTAR domain-containing protein [Mycobacterium avium 104] gi|254775417|ref|ZP_05216933.1| ANTAR domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41395943|gb|AAS03809.1| hypothetical protein MAP_1492 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165756|gb|ABK66653.1| antar domain protein [Mycobacterium avium 104] gi|336457638|gb|EGO36642.1| putative RNA-binding protein [Mycobacterium avium subsp. paratuberculosis S397] Length=95 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/94 (70%), Positives = 73/94 (78%), Gaps = 3/94 (3%) Query 10 MTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWAL 69 MT+N P S G +SGR+LDTARGILI LRRCP+E A DELH+AA RH++PVF +AWAL Sbjct 1 MTSNWVPTQTSCGPHSGRILDTARGILIGLRRCPSEAALDELHSAALRHKVPVFAMAWAL 60 Query 70 VHLAVEG-STPCRSFVDAQSAARREWGQLFAHAA 102 VHLA G TP SFVDAQSAARREWG LF AA Sbjct 61 VHLAGAGQQTP--SFVDAQSAARREWGPLFESAA 92 >gi|296164759|ref|ZP_06847322.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899892|gb|EFG79335.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=95 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/94 (69%), Positives = 73/94 (78%), Gaps = 3/94 (3%) Query 10 MTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWAL 69 MT N PA S G +SGR+LDTARGILI LRRCP+E A DELH+AA RH++PVF +AWAL Sbjct 1 MTTNWVPAQTSCGPHSGRILDTARGILIGLRRCPSEAALDELHSAALRHKVPVFAMAWAL 60 Query 70 VHLAVEG-STPCRSFVDAQSAARREWGQLFAHAA 102 VHLA +G TP SF DAQSAAR EWG LF+ AA Sbjct 61 VHLAGDGEKTP--SFTDAQSAARHEWGPLFSSAA 92 >gi|254818856|ref|ZP_05223857.1| ANTAR domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length=95 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/94 (69%), Positives = 74/94 (79%), Gaps = 3/94 (3%) Query 10 MTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWAL 69 MT+N PA S G +SGR+LDTARGILI LRRCP+E A DELH+AA RH++PVF +AWAL Sbjct 1 MTSNWVPAQTSCGPHSGRILDTARGILIGLRRCPSEAALDELHSAALRHKVPVFAMAWAL 60 Query 70 VHLAVEG-STPCRSFVDAQSAARREWGQLFAHAA 102 VHLA +G TP SF DAQSAAR EWG+LF AA Sbjct 61 VHLAGDGQQTP--SFADAQSAARHEWGRLFESAA 92 >gi|342861324|ref|ZP_08717972.1| ANTAR domain-containing protein [Mycobacterium colombiense CECT 3035] gi|342131224|gb|EGT84505.1| ANTAR domain-containing protein [Mycobacterium colombiense CECT 3035] Length=57 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/56 (70%), Positives = 44/56 (79%), Gaps = 3/56 (5%) Query 48 FDELHNAAQRHRLPVFEIAWALVHLAVEG-STPCRSFVDAQSAARREWGQLFAHAA 102 DELH+AA RH++PVF +AWALVHLA +G TP SFVDAQSAAR EWG LF AA Sbjct 1 MDELHSAAIRHKVPVFAMAWALVHLAGDGEKTP--SFVDAQSAARHEWGPLFKSAA 54 >gi|111025210|ref|YP_707630.1| hypothetical protein RHA1_ro08428 [Rhodococcus jostii RHA1] gi|110824189|gb|ABG99472.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=104 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/75 (46%), Positives = 38/75 (51%), Gaps = 2/75 (2%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVDAQ 87 L A GILIAL RC AFDEL A RH L V +A ALV LA++ P S Sbjct 24 TLSVAEGILIALLRCSQTDAFDELLRVANRHHLSVLTVAHALVDLAIDAHPPLGSPERHP 83 Query 88 SA--ARREWGQLFAH 100 +A A EW AH Sbjct 84 NAPGALAEWESRLAH 98 >gi|111017353|ref|YP_700325.1| hypothetical protein RHA1_ro00331 [Rhodococcus jostii RHA1] gi|110816883|gb|ABG92167.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=108 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/93 (45%), Positives = 50/93 (54%), Gaps = 5/93 (5%) Query 8 QPMTANRGPA-AISSGSNSGR-VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEI 65 +P+T GP I GR +L TA+GILIA R C AFDEL + A+RH L V Sbjct 7 EPLTPTPGPTRLIPRRRPDGRELLGTAKGILIAGRGCSDAQAFDELLDVARRHHLTVLGA 66 Query 66 AWALVHLAVEGSTPCRSFVDAQSAARREWGQLF 98 A +LV LA G +P R +A A EW QL Sbjct 67 ARSLVDLAA-GPSPRRRSPEA--ARFEEWEQLV 96 >gi|111025180|ref|YP_707600.1| hypothetical protein RHA1_ro08398 [Rhodococcus jostii RHA1] gi|110824159|gb|ABG99442.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=191 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/116 (39%), Positives = 54/116 (47%), Gaps = 22/116 (18%) Query 4 TGGSQPMTANRGPAAISSGSNS------------------GR-VLDTARGILIALRRCPA 44 TG S+PM + G I + + S GR +L TA+GILIA RRC Sbjct 69 TGASRPMHESEGQRMIEATAESPLSPLPAPTRLTPRRRLDGRELLATAKGILIAARRCSD 128 Query 45 ETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVDAQSAARREWGQLFAH 100 AFDEL + ++RH L V A LV LA GS R DA EW QL A Sbjct 129 ARAFDELLDVSRRHHLTVVGAARNLVDLAA-GSPSSRCAPDAVRFD--EWEQLLAQ 181 >gi|226359893|ref|YP_002777671.1| hypothetical protein ROP_04790 [Rhodococcus opacus B4] gi|226238378|dbj|BAH48726.1| hypothetical protein [Rhodococcus opacus B4] Length=109 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/73 (47%), Positives = 40/73 (55%), Gaps = 3/73 (4%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVDAQ 87 +L TA+GILIA R C AFDEL + A+RH L V A +LV LA S R A Sbjct 30 LLGTAKGILIAGRGCTDAQAFDELLDVARRHHLTVLGAARSLVELAAGPSPRPRR---AD 86 Query 88 SAARREWGQLFAH 100 +A EW QL A Sbjct 87 TARFDEWEQLVAQ 99 >gi|226349667|ref|YP_002776781.1| hypothetical protein ROP_pROB01-04300 [Rhodococcus opacus B4] gi|226245582|dbj|BAH55929.1| hypothetical protein [Rhodococcus opacus B4] Length=87 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/48 (57%), Positives = 31/48 (65%), Gaps = 1/48 (2%) Query 27 RVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAV 74 ++L TA+GI+IALR C AFDEL A RH L V A ALV LAV Sbjct 28 QLLSTAKGIVIALRGCSDTAAFDELLRMAHRHHLSVLN-ARALVDLAV 74 >gi|296165881|ref|ZP_06848363.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898756|gb|EFG78280.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=111 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/80 (38%), Positives = 41/80 (52%), Gaps = 1/80 (1%) Query 20 SSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTP 79 S R+LDTA G+L+ LRR + AF EL A+RH + +A ALV +A + + Sbjct 10 DSRRTGARILDTAEGVLVTLRRYRVDQAFVELMQTAKRHDVNPVNLADALVAIAEDQLSQ 69 Query 80 CRSFVDAQSAARREWGQLFA 99 A + A WG LFA Sbjct 70 DLDHA-AAAVALATWGNLFA 88 >gi|226359565|ref|YP_002777343.1| hypothetical protein ROP_01510 [Rhodococcus opacus B4] gi|226238050|dbj|BAH48398.1| hypothetical protein [Rhodococcus opacus B4] Length=90 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/90 (48%), Positives = 53/90 (59%), Gaps = 9/90 (10%) Query 9 PMTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWA 68 P T RG +GS + R LDTA G+LI +RR PA FDEL AA+RH + +F +A A Sbjct 8 PHTHPRG-----TGSRT-RALDTAEGVLIGIRRIPAADPFDELVGAARRHGVSLFALAEA 61 Query 69 LVHLAVEGSTPCRSFVDAQSAARREWGQLF 98 LV LA +P + A AAR EWG LF Sbjct 62 LVALAGGTESPDAA---ADDAARTEWGALF 88 >gi|108800451|ref|YP_640648.1| ANTAR [Mycobacterium sp. MCS] gi|119869580|ref|YP_939532.1| ANTAR domain-containing protein [Mycobacterium sp. KMS] gi|126436075|ref|YP_001071766.1| ANTAR domain-containing protein [Mycobacterium sp. JLS] gi|108770870|gb|ABG09592.1| ANTAR [Mycobacterium sp. MCS] gi|119695669|gb|ABL92742.1| ANTAR domain protein [Mycobacterium sp. KMS] gi|126235875|gb|ABN99275.1| ANTAR domain protein [Mycobacterium sp. JLS] Length=86 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query 24 NSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSF 83 S RV+D A GIL+ LR C AFDEL ++ L + +A LV LA S+ Sbjct 9 TSRRVIDIAIGILVGLRGCTERQAFDELVTVVKQTGLGIGRVAGGLVALAAGSSSA---- 64 Query 84 VDAQSAARREWGQLF 98 + A WG+L Sbjct 65 --EHAEAFAAWGELI 77 >gi|240169285|ref|ZP_04747944.1| hypothetical protein MkanA1_08224 [Mycobacterium kansasii ATCC 12478] Length=104 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/75 (34%), Positives = 37/75 (50%), Gaps = 1/75 (1%) Query 27 RVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVDA 86 R L A G+L+ALR C + AF ++ A++H + E+A LV +A E Sbjct 18 RRLGAAEGVLVALRHCSLDEAFSDIVQTAKQHNVAPMELAHGLVAIA-ENDVTYDVDDAV 76 Query 87 QSAARREWGQLFAHA 101 +A R WG L A + Sbjct 77 VAAVSRAWGDLLARS 91 >gi|111019498|ref|YP_702470.1| hypothetical protein RHA1_ro02507 [Rhodococcus jostii RHA1] gi|110819028|gb|ABG94312.1| hypothetical protein RHA1_ro02507 [Rhodococcus jostii RHA1] Length=94 Score = 41.2 bits (95), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/72 (39%), Positives = 37/72 (52%), Gaps = 2/72 (2%) Query 29 LDTARGILIALR--RCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVDA 86 LD A ILI R A+ AFDEL +++ RH++ V ++A AL LA A Sbjct 18 LDAAIQILITARGSSYSADQAFDELLDSSMRHQVDVGDLAEALADLADGMHPDADDHRRA 77 Query 87 QSAARREWGQLF 98 + A REWG L Sbjct 78 RDVATREWGALL 89 >gi|271964599|ref|YP_003338795.1| hypothetical protein Sros_3104 [Streptosporangium roseum DSM 43021] gi|270507774|gb|ACZ86052.1| hypothetical protein Sros_3104 [Streptosporangium roseum DSM 43021] Length=238 Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust. Identities = 18/43 (42%), Positives = 28/43 (66%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 ++D A+GI++ C AE AFDEL +Q H++ V ++A LV Sbjct 184 IIDQAKGIIMKSSGCSAEAAFDELRRVSQHHQVKVADLARLLV 226 >gi|284988709|ref|YP_003407263.1| ANTAR domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284061954|gb|ADB72892.1| ANTAR domain protein with unknown sensor [Geodermatophilus obscurus DSM 43160] Length=270 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 21/49 (43%), Positives = 31/49 (64%), Gaps = 0/49 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 V++ A+G+L+A R AE AF+ L A+QR+ + EIA A+V EG Sbjct 219 VIEQAKGVLMAQRHVDAEAAFEILREASQRYNRKLREIAQAIVDGTSEG 267 >gi|111025140|ref|YP_707560.1| hypothetical protein RHA1_ro08358 [Rhodococcus jostii RHA1] gi|110824119|gb|ABG99402.1| hypothetical protein RHA1_ro08358 [Rhodococcus jostii RHA1] Length=160 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 0/29 (0%) Query 27 RVLDTARGILIALRRCPAETAFDELHNAA 55 R LDTA G+LI +RR PA AFDEL +AA Sbjct 44 RALDTAEGVLIGIRRIPAADAFDELVSAA 72 >gi|297564118|ref|YP_003683091.1| ANTAR domain protein with unknown sensor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848567|gb|ADH70585.1| ANTAR domain protein with unknown sensor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=253 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/43 (47%), Positives = 28/43 (66%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 V+D A+GI++ R C A+TAF L AQR+R V ++A LV Sbjct 196 VIDQAKGIIMHARGCDADTAFAALREVAQRNRKRVVDVARDLV 238 >gi|226359697|ref|YP_002777475.1| hypothetical protein ROP_02830 [Rhodococcus opacus B4] gi|226238182|dbj|BAH48530.1| hypothetical protein [Rhodococcus opacus B4] Length=115 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/74 (41%), Positives = 36/74 (49%), Gaps = 2/74 (2%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVDAQ 87 VL TA+GILIA R AFDEL + ++ H + V A +LV LA T A Sbjct 41 VLATAKGILIATRGYGDAEAFDELLDVSRHHHVSVLRAAKSLVELATRRQTCPSVTTPAP 100 Query 88 SAARR--EWGQLFA 99 S A EW L A Sbjct 101 SYALEFTEWTTLLA 114 >gi|111017187|ref|YP_700159.1| hypothetical protein RHA1_ro00165 [Rhodococcus jostii RHA1] gi|110816717|gb|ABG92001.1| hypothetical protein RHA1_ro00165 [Rhodococcus jostii RHA1] Length=115 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/75 (38%), Positives = 38/75 (51%), Gaps = 4/75 (5%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVD-- 85 VL TA+GILIA R AF+EL + ++ H + V A +LV LA PC S Sbjct 41 VLATAKGILIATRGYGDAEAFEELLDVSRHHHVSVMRAAKSLVELATRRQ-PCPSVTTPA 99 Query 86 -AQSAARREWGQLFA 99 + + +EW L A Sbjct 100 PSYALEFKEWTTLLA 114 >gi|120406282|ref|YP_956111.1| response regulator receiver/ANTAR domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959100|gb|ABM16105.1| response regulator receiver and ANTAR domain protein [Mycobacterium vanbaalenii PYR-1] Length=86 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 31/75 (42%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query 25 SGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFV 84 S R +D A GIL+ALRRC + AF E+ AA R LP+ E+ AL+ +A S Sbjct 11 SRRSIDVAVGILMALRRCSEDQAFAEIAAAAHRMGLPLGEVTRALIAVADAHS----GHT 66 Query 85 DAQSAARREWGQLFA 99 + A R WG+LF+ Sbjct 67 SHRDEALRIWGELFS 81 >gi|337765988|emb|CCB74699.1| conserved protein of unknown function [Streptomyces cattleya NRRL 8057] Length=252 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/52 (41%), Positives = 30/52 (58%), Gaps = 1/52 (1%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTP 79 V+D A GI++A RRCPA A + L A+Q L + E+ +V V G+ P Sbjct 193 VIDQALGIVMARRRCPAHEALELLRRASQHRNLKLRELCAGIVE-EVSGAPP 243 >gi|334335600|ref|YP_004540752.1| PAS fold-3 domain protein [Isoptericola variabilis 225] gi|334105968|gb|AEG42858.1| PAS fold-3 domain protein [Isoptericola variabilis 225] Length=237 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/43 (42%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Query 29 LDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVH 71 ++ A+G+L+ AE AFDEL A+ R +PV E+A L+H Sbjct 152 IEQAKGVLMVAYGVDAEGAFDELRTASNRLNVPVRELAVWLIH 194 >gi|326780907|ref|ZP_08240172.1| ANTAR domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661240|gb|EGE46086.1| ANTAR domain protein [Streptomyces griseus XylebKG-1] Length=242 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/63 (31%), Positives = 33/63 (53%), Gaps = 1/63 (1%) Query 17 AAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 A + + S V+D A G+++ +RC E AFD L A+Q + + E+ L+ ++ G Sbjct 172 ADLEAALRSRTVIDQAIGVVVGQQRCTPEKAFDVLRTASQHRNIKLRELCAELIS-SITG 230 Query 77 STP 79 P Sbjct 231 EVP 233 >gi|182440244|ref|YP_001827963.1| hypothetical protein SGR_6451 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468760|dbj|BAG23280.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=273 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/63 (31%), Positives = 33/63 (53%), Gaps = 1/63 (1%) Query 17 AAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 A + + S V+D A G+++ +RC E AFD L A+Q + + E+ L+ ++ G Sbjct 203 ADLEAALRSRTVIDQAIGVVVGQQRCTPEKAFDVLRTASQHRNIKLRELCAELIS-SITG 261 Query 77 STP 79 P Sbjct 262 EVP 264 >gi|72160697|ref|YP_288354.1| hypothetical protein Tfu_0293 [Thermobifida fusca YX] gi|71914429|gb|AAZ54331.1| hypothetical protein Tfu_0293 [Thermobifida fusca YX] Length=249 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/43 (40%), Positives = 28/43 (66%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 V+D A+GIL+ R ++ AF+EL AQR+ + V ++A L+ Sbjct 197 VIDQAKGILMHARGLTSQQAFEELRKVAQRNGMKVTDVAQQLM 239 >gi|302865097|ref|YP_003833734.1| ANTAR domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501597|ref|YP_004080484.1| antar domain-containing protein [Micromonospora sp. L5] gi|302567956|gb|ADL44158.1| ANTAR domain protein [Micromonospora aurantiaca ATCC 27029] gi|315408216|gb|ADU06333.1| ANTAR domain protein [Micromonospora sp. L5] Length=236 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/49 (39%), Positives = 29/49 (60%), Gaps = 0/49 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 V++ A+GI++ RRC A+ AF L +Q + E+A +LV AV G Sbjct 185 VIEQAKGIIMGQRRCSADEAFAILARVSQDSNRKLREVAESLVDRAVHG 233 >gi|29831174|ref|NP_825808.1| hypothetical protein SAV_4631 [Streptomyces avermitilis MA-4680] gi|29608288|dbj|BAC72343.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length=94 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/43 (45%), Positives = 29/43 (68%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 V+D ARG+++AL C +E A+D L + +QR L + +A ALV Sbjct 23 VIDQARGMVMALAPCSSERAWDLLVDVSQRCNLKLRYVAAALV 65 >gi|226360937|ref|YP_002778715.1| hypothetical protein ROP_15230 [Rhodococcus opacus B4] gi|226239422|dbj|BAH49770.1| hypothetical protein [Rhodococcus opacus B4] Length=101 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 34/63 (54%), Gaps = 1/63 (1%) Query 9 PMTANRGPAAISSGSNSGRV-LDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAW 67 P+ G +++ S S R +D A G+LIA R C AF EL +++H++ + A Sbjct 3 PVPTQVGRTFMATPSYSTRTAVDIAVGVLIAYRGCSENDAFTELAETSRQHKVALARTAR 62 Query 68 ALV 70 AL+ Sbjct 63 ALI 65 >gi|291442917|ref|ZP_06582307.1| ANTAR domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|291345864|gb|EFE72768.1| ANTAR domain-containing protein [Streptomyces roseosporus NRRL 15998] Length=244 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/63 (31%), Positives = 33/63 (53%), Gaps = 1/63 (1%) Query 17 AAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 A + + S V+D A G+++ +RC E AFD L A+Q + + E+ L+ ++ G Sbjct 174 ADLEAALRSRTVIDQAIGVVVGQQRCTPEKAFDVLRTASQHRNIKLRELCAELIA-SITG 232 Query 77 STP 79 P Sbjct 233 EMP 235 >gi|239985976|ref|ZP_04706640.1| hypothetical protein SrosN1_01582 [Streptomyces roseosporus NRRL 11379] Length=237 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/63 (31%), Positives = 33/63 (53%), Gaps = 1/63 (1%) Query 17 AAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 A + + S V+D A G+++ +RC E AFD L A+Q + + E+ L+ ++ G Sbjct 167 ADLEAALRSRTVIDQAIGVVVGQQRCTPEKAFDVLRTASQHRNIKLRELCAELIA-SITG 225 Query 77 STP 79 P Sbjct 226 EMP 228 >gi|226361249|ref|YP_002779027.1| hypothetical protein ROP_18350 [Rhodococcus opacus B4] gi|226239734|dbj|BAH50082.1| hypothetical protein [Rhodococcus opacus B4] Length=251 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (67%), Gaps = 0/36 (0%) Query 25 SGRVLDTARGILIALRRCPAETAFDELHNAAQRHRL 60 S V+D A+GI++ALR AETAFD L +QR + Sbjct 193 SRSVIDQAKGIVMALRGLDAETAFDVLVTRSQRENV 228 >gi|333022809|ref|ZP_08450873.1| hypothetical protein STTU_0313 [Streptomyces sp. Tu6071] gi|332742661|gb|EGJ73102.1| hypothetical protein STTU_0313 [Streptomyces sp. Tu6071] Length=239 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/68 (33%), Positives = 35/68 (52%), Gaps = 1/68 (1%) Query 12 ANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVH 71 A R A + + S V+D A G+++ +RC AE AF L A+Q + + ++ LV Sbjct 164 AQRFAADLQAALRSRTVIDQAMGVIMGQQRCTAEEAFAYLRVASQNRNIKLRDLCTRLVE 223 Query 72 LAVEGSTP 79 V G+ P Sbjct 224 -GVSGTPP 230 >gi|302865099|ref|YP_003833736.1| ANTAR domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501599|ref|YP_004080486.1| antar domain-containing protein [Micromonospora sp. L5] gi|302567958|gb|ADL44160.1| ANTAR domain protein [Micromonospora aurantiaca ATCC 27029] gi|315408218|gb|ADU06335.1| ANTAR domain protein [Micromonospora sp. L5] Length=234 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/43 (42%), Positives = 26/43 (61%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 V++ A+GI++ RRC AE AF L +Q + E+A ALV Sbjct 186 VIEQAKGIIMGQRRCSAEEAFTLLAKLSQDSNRKLREVAEALV 228 >gi|340527545|gb|AEK42750.1| hypothetical protein RAM_21350 [Amycolatopsis mediterranei S699] Length=253 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/43 (40%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Query 29 LDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVH 71 ++ A+G ++A+RRC E A+ L A+Q + V E+A ALV Sbjct 173 IEQAKGAIMAVRRCSPEEAWQTLRRASQEFNVKVRELAVALVE 215 >gi|300786078|ref|YP_003766369.1| hypothetical protein AMED_4192 [Amycolatopsis mediterranei U32] gi|299795592|gb|ADJ45967.1| ANTAR domain-containing protein [Amycolatopsis mediterranei U32] Length=258 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/43 (40%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Query 29 LDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVH 71 ++ A+G ++A+RRC E A+ L A+Q + V E+A ALV Sbjct 178 IEQAKGAIMAVRRCSPEEAWQTLRRASQEFNVKVRELAVALVE 220 >gi|226304768|ref|YP_002764726.1| hypothetical protein RER_12790 [Rhodococcus erythropolis PR4] gi|226183883|dbj|BAH31987.1| hypothetical protein RER_12790 [Rhodococcus erythropolis PR4] Length=223 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/43 (40%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 V++ A+G+L+A R C A+ AFD L +Q + + +IA LV Sbjct 168 VIEQAKGLLMAERECSADQAFDLLVEMSQEWNVKLRDIAGGLV 210 >gi|111017117|ref|YP_700089.1| hypothetical protein RHA1_ro00095 [Rhodococcus jostii RHA1] gi|110816647|gb|ABG91931.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=256 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/53 (33%), Positives = 32/53 (61%), Gaps = 0/53 (0%) Query 19 ISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVH 71 ++ S V++ A+GI++ALR PA+ AF+ L +Q+ + + E+A +V Sbjct 197 LTKAMKSRAVIEQAKGIVMALRGVPADQAFEILVAQSQQEHVKLAEVARRIVE 249 >gi|229492400|ref|ZP_04386207.1| sensor histidine kinase [Rhodococcus erythropolis SK121] gi|229320809|gb|EEN86623.1| sensor histidine kinase [Rhodococcus erythropolis SK121] Length=223 Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/43 (40%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 +++ A+G+L+A R C A+ AFD L +Q + V +IA LV Sbjct 168 LIEQAKGLLMAERECSADQAFDFLVQMSQEWNVKVRDIAGGLV 210 >gi|229492506|ref|ZP_04386309.1| hypothetical protein RHOER0001_5039 [Rhodococcus erythropolis SK121] gi|229320492|gb|EEN86310.1| hypothetical protein RHOER0001_5039 [Rhodococcus erythropolis SK121] Length=208 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 24/73 (33%), Positives = 37/73 (51%), Gaps = 2/73 (2%) Query 28 VLDTARGILIALRRCPA--ETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVD 85 VLD+A +L+ R P E AF E+ + A R+R+ V +A AL+ ++ Sbjct 17 VLDSAEHVLVIARGKPFGREQAFHEVLSVAIRNRIEVLTLARALIDVSESRDYRAIPTDT 76 Query 86 AQSAARREWGQLF 98 A + A EWG+L Sbjct 77 AHTVAVLEWGELL 89 >gi|300788388|ref|YP_003768679.1| hypothetical protein AMED_6547 [Amycolatopsis mediterranei U32] gi|299797902|gb|ADJ48277.1| ANTAR domain-containing protein [Amycolatopsis mediterranei U32] gi|340529984|gb|AEK45189.1| hypothetical protein RAM_33580 [Amycolatopsis mediterranei S699] Length=246 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 15/39 (39%), Positives = 25/39 (65%), Gaps = 0/39 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIA 66 V+D A+G+L+A+ R A+ AFD L +Q + + E+A Sbjct 198 VIDQAKGMLMAMHRVSADQAFDLLVKRSQEQNVKLREVA 236 >gi|325964486|ref|YP_004242392.1| response regulator with antiterminator output domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470573|gb|ADX74258.1| response regulator with putative antiterminator output domain [Arthrobacter phenanthrenivorans Sphe3] Length=222 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/78 (29%), Positives = 38/78 (49%), Gaps = 2/78 (2%) Query 8 QPMTANRGPAAISSGSNSGRVLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAW 67 Q T A+ +++ V+D ARGIL+ + +E AF L + + + + +A Sbjct 127 QRETEQTAREAVKGATSTRSVIDQARGILMGQLKMGSEDAFQMLVSTSSHRNVKLVVVAA 186 Query 68 ALVHLAVEGSTPCRSFVD 85 LV LA S R+++D Sbjct 187 ELVQLA--NSAESRNYLD 202 >gi|226303720|ref|YP_002763678.1| hypothetical protein RER_02310 [Rhodococcus erythropolis PR4] gi|226182835|dbj|BAH30939.1| hypothetical protein RER_02310 [Rhodococcus erythropolis PR4] Length=208 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/73 (33%), Positives = 37/73 (51%), Gaps = 2/73 (2%) Query 28 VLDTARGILIALRRCPA--ETAFDELHNAAQRHRLPVFEIAWALVHLAVEGSTPCRSFVD 85 VLD+A +L+ R P E AF E+ + A R+R+ V +A AL+ ++ Sbjct 17 VLDSAEHVLVIARGKPFGREQAFHEVLSVAIRNRIEVLTLARALIDVSESRDYRAIPTDT 76 Query 86 AQSAARREWGQLF 98 A + A EWG+L Sbjct 77 AHTVAVLEWGELL 89 >gi|300786082|ref|YP_003766373.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795596|gb|ADJ45971.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|340527549|gb|AEK42754.1| two-component system response regulator [Amycolatopsis mediterranei S699] Length=248 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/49 (37%), Positives = 29/49 (60%), Gaps = 0/49 (0%) Query 28 VLDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 V+D A+G+L+A+R+ A+ AF L +QR + + E+A V V G Sbjct 195 VIDQAKGMLMAIRQVDADDAFALLVEQSQRENVKLREVAERFVARVVSG 243 >gi|297199937|ref|ZP_06917334.1| response regulator receiver and ANTAR domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197710406|gb|EDY54440.1| response regulator receiver and ANTAR domain-containing protein [Streptomyces sviceus ATCC 29083] Length=250 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 19/47 (41%), Positives = 30/47 (64%), Gaps = 1/47 (2%) Query 25 SGRV-LDTARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALV 70 S RV ++ A+G+L PA+ AF L A+RHRLP+ ++A A++ Sbjct 183 SSRVRIEQAKGMLAERWSVPADQAFMALRQYARRHRLPLDQVASAVI 229 >gi|284992035|ref|YP_003410589.1| ANTAR domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065280|gb|ADB76218.1| ANTAR domain protein with unknown sensor [Geodermatophilus obscurus DSM 43160] Length=241 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 0/45 (0%) Query 32 ARGILIALRRCPAETAFDELHNAAQRHRLPVFEIAWALVHLAVEG 76 A G+L+A RC A+ AFD L A+QR + + ++A +V EG Sbjct 189 AVGLLMAQERCTADRAFDLLRIASQRRNVKLRDVAAGVVTAFEEG 233 Lambda K H 0.320 0.130 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127822873252 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40