BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1773c
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
gi|308231936|ref|ZP_07414319.2| transcriptional regulator [Mycob... 487 8e-136
gi|15608911|ref|NP_216289.1| transcriptional regulatory protein ... 486 2e-135
gi|15841242|ref|NP_336279.1| IclR family transcriptional regulat... 485 3e-135
gi|254364607|ref|ZP_04980653.1| hypothetical transcriptional reg... 484 7e-135
gi|340626785|ref|YP_004745237.1| putative transcriptional regula... 479 1e-133
gi|167966732|ref|ZP_02549009.1| hypothetical transcriptional reg... 448 3e-124
gi|254231963|ref|ZP_04925290.1| hypothetical protein TBCG_01729 ... 447 7e-124
gi|289569839|ref|ZP_06450066.1| transcriptional regulator [Mycob... 422 2e-116
gi|339631827|ref|YP_004723469.1| transcriptional regulator [Myco... 412 2e-113
gi|296164761|ref|ZP_06847324.1| IclR family transcriptional regu... 337 1e-90
gi|240172005|ref|ZP_04750664.1| transcriptional regulatory prote... 321 8e-86
gi|121637675|ref|YP_977898.1| hypothetical protein BCG_1806c [My... 306 2e-81
gi|120401183|ref|YP_951012.1| regulatory proteins IclR [Mycobact... 273 2e-71
gi|289750337|ref|ZP_06509715.1| transcriptional regulator [Mycob... 238 9e-61
gi|289750341|ref|ZP_06509719.1| predicted protein [Mycobacterium... 227 1e-57
gi|289750336|ref|ZP_06509714.1| transcriptional regulator [Mycob... 185 6e-45
gi|296164612|ref|ZP_06847179.1| crp family transcriptional regul... 146 3e-33
gi|340626726|ref|YP_004745178.1| putative transcriptional regula... 140 3e-31
gi|289750275|ref|ZP_06509653.1| conserved hypothetical protein [... 137 1e-30
gi|15608857|ref|NP_216235.1| transcriptional regulatory protein ... 137 2e-30
gi|289443178|ref|ZP_06432922.1| transcriptional regulator [Mycob... 137 2e-30
gi|240169428|ref|ZP_04748087.1| putative transcriptional regulat... 132 5e-29
gi|118592788|ref|ZP_01550177.1| probable transcriptional regulat... 132 5e-29
gi|332306835|ref|YP_004434686.1| transcriptional regulator, IclR... 128 7e-28
gi|109898642|ref|YP_661897.1| IclR family transcriptional regula... 126 2e-27
gi|87122108|ref|ZP_01077992.1| probable transcriptional regulato... 122 4e-26
gi|300714988|ref|YP_003739791.1| transcriptional regulator, IclR... 110 2e-22
gi|307130701|ref|YP_003882717.1| IclR family transcriptional reg... 106 2e-21
gi|148551009|ref|YP_001260439.1| transcriptional regulator IclR-... 103 2e-20
gi|302533756|ref|ZP_07286098.1| IclR family transcriptional regu... 98.6 7e-19
gi|317049018|ref|YP_004116666.1| IclR family transcriptional reg... 98.2 9e-19
gi|121534031|ref|ZP_01665857.1| transcriptional regulator, IclR ... 97.8 1e-18
gi|291618289|ref|YP_003521031.1| TtgV [Pantoea ananatis LMG 2010... 97.1 2e-18
gi|327394679|dbj|BAK12101.1| HTH-type transcriptional regulator ... 96.7 3e-18
gi|317053334|ref|YP_004119101.1| transcriptional regulator, IclR... 95.9 5e-18
gi|118472632|ref|YP_886822.1| IclR family transcriptional regula... 94.7 1e-17
gi|335042085|ref|ZP_08535112.1| transcriptional regulator, IclR ... 94.0 2e-17
gi|290956343|ref|YP_003487525.1| transcriptional regulator [Stre... 94.0 2e-17
gi|158318700|ref|YP_001511208.1| IclR family transcriptional reg... 93.6 2e-17
gi|222085035|ref|YP_002543564.1| transcriptional regulator prote... 93.6 3e-17
gi|163758444|ref|ZP_02165532.1| putative IclR family transcripti... 93.2 3e-17
gi|326440345|ref|ZP_08215079.1| IclR family transcriptional regu... 93.2 4e-17
gi|294811920|ref|ZP_06770563.1| IclR-family transcriptional regu... 92.8 4e-17
gi|302546398|ref|ZP_07298740.1| putative IclR-family transcripti... 92.8 4e-17
gi|297195104|ref|ZP_06912502.1| IclR family transcriptional regu... 92.4 5e-17
gi|300717818|ref|YP_003742621.1| transcriptional regulator, IclR... 92.4 6e-17
gi|320011490|gb|ADW06340.1| transcriptional regulator, IclR fami... 92.0 6e-17
gi|328881565|emb|CCA54804.1| Transcriptional regulator, IclR fam... 92.0 6e-17
gi|297198799|ref|ZP_06916196.1| IclR-family transcriptional regu... 91.7 8e-17
gi|344998911|ref|YP_004801765.1| IclR family transcriptional reg... 91.3 1e-16
>gi|308231936|ref|ZP_07414319.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|308369523|ref|ZP_07418115.2| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|308370821|ref|ZP_07422839.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
20 more sequence titles
Length=259
Score = 487 bits (1253), Expect = 8e-136, Method: Compositional matrix adjust.
Identities = 248/248 (100%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 12 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 71
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 72 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 131
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE
Sbjct 132 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 191
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA
Sbjct 192 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 251
Query 241 ADSPDWTR 248
ADSPDWTR
Sbjct 252 ADSPDWTR 259
>gi|15608911|ref|NP_216289.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|31792962|ref|NP_855455.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|148661581|ref|YP_001283104.1| IclR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
36 more sequence titles
Length=248
Score = 486 bits (1250), Expect = 2e-135, Method: Compositional matrix adjust.
Identities = 247/248 (99%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
+PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 1 MPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE
Sbjct 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA
Sbjct 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
Query 241 ADSPDWTR 248
ADSPDWTR
Sbjct 241 ADSPDWTR 248
>gi|15841242|ref|NP_336279.1| IclR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|13881467|gb|AAK46093.1| transcriptional regulator, IclR family [Mycobacterium tuberculosis
CDC1551]
gi|323719705|gb|EGB28824.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
Length=259
Score = 485 bits (1248), Expect = 3e-135, Method: Compositional matrix adjust.
Identities = 247/248 (99%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 12 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 71
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGA+IAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 72 EVGLVSVDSHGRFALGERLLGFGSVTGAYIAAAFRPTVERVARATDGETVDLSVLRGQRM 131
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE
Sbjct 132 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 191
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA
Sbjct 192 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 251
Query 241 ADSPDWTR 248
ADSPDWTR
Sbjct 252 ADSPDWTR 259
>gi|254364607|ref|ZP_04980653.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|134150121|gb|EBA42166.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
Length=248
Score = 484 bits (1245), Expect = 7e-135, Method: Compositional matrix adjust.
Identities = 246/248 (99%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
+PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 1 MPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGA+IAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 61 EVGLVSVDSHGRFALGERLLGFGSVTGAYIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE
Sbjct 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA
Sbjct 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
Query 241 ADSPDWTR 248
ADSPDWTR
Sbjct 241 ADSPDWTR 248
>gi|340626785|ref|YP_004745237.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340004975|emb|CCC44123.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=248
Score = 479 bits (1233), Expect = 1e-133, Method: Compositional matrix adjust.
Identities = 245/248 (99%), Positives = 246/248 (99%), Gaps = 0/248 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
+PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDL ERLGLAKSTTRRLLVGLV
Sbjct 1 MPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLWERLGLAKSTTRRLLVGLV 60
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE
Sbjct 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
I EIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA
Sbjct 181 IAEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
Query 241 ADSPDWTR 248
ADSPDWTR
Sbjct 241 ADSPDWTR 248
>gi|167966732|ref|ZP_02549009.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis H37Ra]
gi|339298343|gb|AEJ50453.1| IclR family transcriptional regulator [Mycobacterium tuberculosis
CCDC5180]
Length=231
Score = 448 bits (1153), Expect = 3e-124, Method: Compositional matrix adjust.
Identities = 230/231 (99%), Positives = 231/231 (100%), Gaps = 0/231 (0%)
Query 18 VLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE 77
+LRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE
Sbjct 1 MLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE 60
Query 78 RLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
RLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA
Sbjct 61 RLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 120
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT 197
VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT
Sbjct 121 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT 180
Query 198 PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 248
PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR
Sbjct 181 PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 231
>gi|254231963|ref|ZP_04925290.1| hypothetical protein TBCG_01729 [Mycobacterium tuberculosis C]
gi|124601022|gb|EAY60032.1| hypothetical protein TBCG_01729 [Mycobacterium tuberculosis C]
Length=231
Score = 447 bits (1150), Expect = 7e-124, Method: Compositional matrix adjust.
Identities = 229/231 (99%), Positives = 231/231 (100%), Gaps = 0/231 (0%)
Query 18 VLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE 77
+LRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE
Sbjct 1 MLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE 60
Query 78 RLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
RLLGFGSVTGA+IAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA
Sbjct 61 RLLGFGSVTGAYIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 120
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT 197
VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT
Sbjct 121 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT 180
Query 198 PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 248
PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR
Sbjct 181 PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 231
>gi|289569839|ref|ZP_06450066.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289543593|gb|EFD47241.1| transcriptional regulator [Mycobacterium tuberculosis T17]
Length=293
Score = 422 bits (1085), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%)
Query 34 GHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGERLLGFGSVTGAHIAAA 93
GHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGERLLGFGSVTGAHIAAA
Sbjct 79 GHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGERLLGFGSVTGAHIAAA 138
Query 94 FRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSAVGLRFPLNGTANGKAA 153
FRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSAVGLRFPLNGTANGKAA
Sbjct 139 FRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSAVGLRFPLNGTANGKAA 198
Query 154 LAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN 213
LAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN
Sbjct 199 LAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN 258
Query 214 VIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 248
VIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR
Sbjct 259 VIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 293
>gi|339631827|ref|YP_004723469.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|339331183|emb|CCC26865.1| putative transcriptional regulatory protein [Mycobacterium africanum
GM041182]
Length=246
Score = 412 bits (1059), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 244/248 (99%), Positives = 245/248 (99%), Gaps = 2/248 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
+PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 1 MPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRRE 180
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAAL DAEAALCRLDPMVAEGLRRE
Sbjct 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAAL--DDAEAALCRLDPMVAEGLRRE 178
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 240
IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA
Sbjct 179 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAA 238
Query 241 ADSPDWTR 248
ADSPDWTR
Sbjct 239 ADSPDWTR 246
>gi|296164761|ref|ZP_06847324.1| IclR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899894|gb|EFG79337.1| IclR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=248
Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 193/247 (79%), Positives = 215/247 (88%), Gaps = 1/247 (0%)
Query 3 PTEGKS-TTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVE 61
P+ G++ T RDEGIQVLRRA AALDEIAAEPG LRLVDL +RLGLAKST RRLLVGLVE
Sbjct 2 PSPGENFPTGRDEGIQVLRRAAAALDEIAAEPGRLRLVDLGDRLGLAKSTARRLLVGLVE 61
Query 62 VGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMW 121
VGL SVD+ GRF+LG+RLLGFG+ A ++A FRPT+ERVARATDGETVDLSVLRG RMW
Sbjct 62 VGLASVDAQGRFSLGDRLLGFGNSDAARVSAIFRPTIERVARATDGETVDLSVLRGGRMW 121
Query 122 FVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREI 181
FVDQIESS+RLRAVSA+G+RFPL TANGKAALAALDD DAEAA+ RL A+ LR E+
Sbjct 122 FVDQIESSHRLRAVSAIGVRFPLESTANGKAALAALDDGDAEAAISRLGREAADRLRAEV 181
Query 182 VEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAA 241
EIRRTG+AFDR++HTPGISAAAIARRA GD V+AISVPAPT RFLEKE RI+AALRAAA
Sbjct 182 AEIRRTGVAFDRDQHTPGISAAAIARRAAGDTVVAISVPAPTDRFLEKEDRIVAALRAAA 241
Query 242 DSPDWTR 248
DSP WTR
Sbjct 242 DSPVWTR 248
>gi|240172005|ref|ZP_04750664.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=231
Score = 321 bits (822), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 184/231 (80%), Positives = 201/231 (88%), Gaps = 0/231 (0%)
Query 18 VLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGE 77
+LRRA AALDEIAA+PG LRLVDL ERL LAKSTTRRLLVGLVEVGL SVD G F+LGE
Sbjct 1 MLRRAAAALDEIAADPGQLRLVDLSERLQLAKSTTRRLLVGLVEVGLASVDDRGHFSLGE 60
Query 78 RLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
RLLGFG+ TGAHIAA FRPT+ERVA AT GETVDLS+LR Q+MWF+DQIESS+RLRAVSA
Sbjct 61 RLLGFGNATGAHIAAVFRPTIERVAAATGGETVDLSILRSQKMWFIDQIESSHRLRAVSA 120
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHT 197
+G+RFPLNGTANGKAALA LD+A A AAL P VA LRREI EIR TGIAFDR+EHT
Sbjct 121 IGVRFPLNGTANGKAALAVLDEAAAAAALASFTPEVAAALRREIAEIRSTGIAFDRDEHT 180
Query 198 PGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 248
PGISAAAIA RALGDNVIAISVP PT RF+EKE RI++ALR+AADSP WTR
Sbjct 181 PGISAAAIAGRALGDNVIAISVPTPTERFVEKEDRIVSALRSAADSPAWTR 231
>gi|121637675|ref|YP_977898.1| hypothetical protein BCG_1806c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|121493322|emb|CAL71793.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
Length=479
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
+PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 1 MPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALD 158
WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAAL+
Sbjct 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALE 158
>gi|120401183|ref|YP_951012.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1]
gi|119954001|gb|ABM11006.1| transcriptional regulator, IclR family [Mycobacterium vanbaalenii
PYR-1]
Length=243
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/239 (64%), Positives = 180/239 (76%), Gaps = 12/239 (5%)
Query 8 STTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSV 67
+T RD+G+QVLRRA AALDEIA PG LRLVD+ LGLAKST RRLLV LV+VG +V
Sbjct 12 ATEGRDDGLQVLRRAAAALDEIATAPGRLRLVDVGTNLGLAKSTARRLLVALVDVGFAAV 71
Query 68 DSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIE 127
D GR+ LG+RLLG S G+ +AA RP +ER+A AT GETVDLSVLRG++MWFVDQIE
Sbjct 72 DDSGRYHLGDRLLGLTSADGSTLAARLRPVIERLALAT-GETVDLSVLRGRQMWFVDQIE 130
Query 128 SSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIVEIRRT 187
S++RLRAVSAVG RFPL+ TANGKAALA ++D DA + +GL EI E+RRT
Sbjct 131 SAHRLRAVSAVGGRFPLHDTANGKAALALMED-DA----------IPDGLLDEIAEVRRT 179
Query 188 GIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAADSPDW 246
GIA+DR+EHT GISAA IA R G +V+AISVPAPT RF +E I+ ALRAAA P W
Sbjct 180 GIAYDRDEHTAGISAAGIAVRLPGGHVVAISVPAPTERFRAQESTIVDALRAAAADPVW 238
>gi|289750337|ref|ZP_06509715.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289690924|gb|EFD58353.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=125
Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
+PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 1 MPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM
Sbjct 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRM 120
Query 121 W 121
W
Sbjct 121 W 121
>gi|289750341|ref|ZP_06509719.1| predicted protein [Mycobacterium tuberculosis T92]
gi|289690928|gb|EFD58357.1| predicted protein [Mycobacterium tuberculosis T92]
Length=127
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/116 (100%), Positives = 116/116 (100%), Gaps = 0/116 (0%)
Query 1 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 60
VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV
Sbjct 12 VPPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV 71
Query 61 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLR 116
EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLR
Sbjct 72 EVGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLR 127
>gi|289750336|ref|ZP_06509714.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289690923|gb|EFD58352.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=95
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 94/95 (99%), Positives = 95/95 (100%), Gaps = 0/95 (0%)
Query 154 LAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN 213
+AALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN
Sbjct 1 MAALDDADAEAALCRLDPMVAEGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN 60
Query 214 VIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 248
VIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR
Sbjct 61 VIAISVPAPTARFLEKEQRIIAALRAAADSPDWTR 95
>gi|296164612|ref|ZP_06847179.1| crp family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900031|gb|EFG79470.1| crp family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=270
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/229 (42%), Positives = 126/229 (56%), Gaps = 5/229 (2%)
Query 15 GIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SVDSHGRF 73
G+QV+ RA L + A PG L ++ +RLGLA+ST R+L L + GLV S G +
Sbjct 7 GVQVIARAAEILRLLQAHPGGLSQAEIGDRLGLARSTVSRILGALDDEGLVASPRGRGGY 66
Query 74 ALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLR 133
LG + S + P +E ++R GETVDLS+L G R FVDQ+ S +RLR
Sbjct 67 RLGPEIARMASTVRLGVVMDVHPFMEELSRDL-GETVDLSILDGDRATFVDQVVSPHRLR 125
Query 134 AVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMV---AEGLRREIVEIRRTGIA 190
A+SAVG FPL+ ANGKA LA L + L RL P LR E+ +R G+A
Sbjct 126 AISAVGESFPLHCCANGKALLAGLPPERLPSRLARLTPNTITSPAALREELERVRAEGVA 185
Query 191 FDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRA 239
+DR E T GI A R + + +A+SVP P RF +E + ALRA
Sbjct 186 YDREEQTEGICAVGAVLRGVTGHAVAVSVPVPAQRFYGREAELTQALRA 234
>gi|340626726|ref|YP_004745178.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340004916|emb|CCC44062.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=259
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/245 (41%), Positives = 129/245 (53%), Gaps = 10/245 (4%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SVDS 69
R GIQV+ RA L + A PG L ++ ER+G+A+ST R+L L + GLV S +
Sbjct 8 TRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGA 67
Query 70 HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESS 129
G + LG + + + P + ++R D ETVDLS+L G R FVDQ+
Sbjct 68 RGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELD-ETVDLSILDGDRADFVDQVVPP 126
Query 130 YRLRAVSAVGLRFPLNGTANGKAALAAL-DDADAEAALCRLDPMVAE------GLRREIV 182
RLRAVSAVG FPL ANGKA LAAL + A A RL P+ A LR E+
Sbjct 127 RRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELN 186
Query 183 EIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAAD 242
IR G+A+DR E T GI A R + ++A+SVP P RF +E + AL A
Sbjct 187 RIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVS 246
Query 243 SPD-W 246
D W
Sbjct 247 KVDAW 251
>gi|289750275|ref|ZP_06509653.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289690862|gb|EFD58291.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=535
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/243 (40%), Positives = 127/243 (53%), Gaps = 9/243 (3%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SVDS 69
R GIQV+ RA L + A PG L ++ ER+G+A+ST R+L L + GLV S +
Sbjct 284 TRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGA 343
Query 70 HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESS 129
G + LG + + + P + ++R D ETVDLS+L G R VDQ+
Sbjct 344 RGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELD-ETVDLSILDGDRADVVDQVVPP 402
Query 130 YRLRAVSAVGLRFPLNGTANGKAALAAL-DDADAEAALCRLDPMVAE------GLRREIV 182
RLRAVSAVG FPL ANGKA LAAL + A A RL P+ A LR E+
Sbjct 403 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELN 462
Query 183 EIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAAD 242
IR G+A+DR E T GI A R + ++A+SVP P RF +E + AL A
Sbjct 463 RIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVS 522
Query 243 SPD 245
D
Sbjct 523 KVD 525
>gi|15608857|ref|NP_216235.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841179|ref|NP_336216.1| Crp family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31792907|ref|NP_855400.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=259
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 128/245 (53%), Gaps = 10/245 (4%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SVDS 69
R GIQV+ RA L + A PG L ++ ER+G+A+ST R+L L + GLV S +
Sbjct 8 TRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRGA 67
Query 70 HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESS 129
G + LG + + + P + ++R D ETVDLS+L G R VDQ+
Sbjct 68 RGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELD-ETVDLSILDGDRADVVDQVVPP 126
Query 130 YRLRAVSAVGLRFPLNGTANGKAALAAL-DDADAEAALCRLDPMVAE------GLRREIV 182
RLRAVSAVG FPL ANGKA LAAL + A A RL P+ A LR E+
Sbjct 127 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELN 186
Query 183 EIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAAD 242
IR G+A+DR E T GI A R + ++A+SVP P RF +E + AL A
Sbjct 187 RIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVS 246
Query 243 SPD-W 246
D W
Sbjct 247 KVDAW 251
>gi|289443178|ref|ZP_06432922.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289569770|ref|ZP_06449997.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289416097|gb|EFD13337.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289543524|gb|EFD47172.1| transcriptional regulator [Mycobacterium tuberculosis T17]
Length=259
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 128/245 (53%), Gaps = 10/245 (4%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SVDS 69
R GIQV+ RA L + A PG L ++ ER+G+A+ST R+L L + GLV S +
Sbjct 8 TRSGGIQVIARAAELLRVLQAHPGGLSQAEIGERVGMARSTVSRILNALEDEGLVASRRA 67
Query 70 HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESS 129
G + LG + + + P + ++R D ETVDLS+L G R VDQ+
Sbjct 68 RGPYRLGPEITRMATTVRLGVVTEMHPFLTELSRELD-ETVDLSILDGDRADVVDQVVPP 126
Query 130 YRLRAVSAVGLRFPLNGTANGKAALAAL-DDADAEAALCRLDPMVAE------GLRREIV 182
RLRAVSAVG FPL ANGKA LAAL + A A RL P+ A LR E+
Sbjct 127 QRLRAVSAVGESFPLYCCANGKALLAALPPERQARALPSRLAPLTANTITDRAALRDELN 186
Query 183 EIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAAD 242
IR G+A+DR E T GI A R + ++A+SVP P RF +E + AL A
Sbjct 187 RIRVDGVAYDREEQTEGICAVGAVLRGVSVELVAVSVPVPAQRFYGREAELAGALLAWVS 246
Query 243 SPD-W 246
D W
Sbjct 247 KVDAW 251
>gi|240169428|ref|ZP_04748087.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=257
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/235 (43%), Positives = 131/235 (56%), Gaps = 9/235 (3%)
Query 12 RDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SVDSH 70
R GIQV+ RA L + A PG L V++ ER+G+A+ST R+L L + GLV S
Sbjct 11 RSGGIQVIARAAEILRVLQAHPGGLSQVEIGERVGMARSTVSRILNALEDEGLVASRGVR 70
Query 71 GRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSY 130
G + LG + S + A P + +++R D ETVDLS+L G R F+DQ+
Sbjct 71 GPYRLGPEIARMASTVRLSVVADLHPFLTQLSRELD-ETVDLSILDGDRADFIDQVVPPR 129
Query 131 RLRAVSAVGLRFPLNGTANGKAALAAL-DDADAEAALCRLDPMVAE------GLRREIVE 183
RLRAVSAVG FPL ANGKA LA+L + A+ RL P+ A LR E+ +
Sbjct 130 RLRAVSAVGESFPLYCCANGKALLASLPPERQAQVLPSRLMPLTANTITDRAALREELAQ 189
Query 184 IRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALR 238
I R GIA+DR E T GI A + D+V+A+SVP P RF +E + ALR
Sbjct 190 ISRDGIAYDREEQTDGICAVGTVLHGVTDHVVAVSVPVPAQRFYGREAELAKALR 244
>gi|118592788|ref|ZP_01550177.1| probable transcriptional regulatory protein [Stappia aggregata
IAM 12614]
gi|118434558|gb|EAV41210.1| probable transcriptional regulatory protein [Stappia aggregata
IAM 12614]
Length=267
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/242 (38%), Positives = 137/242 (57%), Gaps = 12/242 (4%)
Query 4 TEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVG 63
TE K+ +N +GIQV+ RA L + + L L + +R+ L +ST +R++ L+
Sbjct 19 TERKTQSN--QGIQVISRAAEILRILKKDNSGLSLGQIADRVHLPRSTVQRIVNALIAER 76
Query 64 LVSVDS-HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWF 122
LV + G LG + + ++A RP + ++R T ETVDL+ R M F
Sbjct 77 LVMASAAEGGLRLGSEIQSLAAAGRINMAELVRPILAELSRETK-ETVDLAAFRDDHMVF 135
Query 123 VDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALC----RLDPMVAEGLR 178
VDQ+ S+RLR VSAVG FP+ TANGKAAL+ ++D D A+ + D A+ L
Sbjct 136 VDQVVGSHRLRTVSAVGEVFPMTDTANGKAALSLMED-DVLVAIAGPELKADGKTAKPLS 194
Query 179 ---REIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIA 235
+E+ +IR+TGIA+D NEHT GISAA A + + A+SVP P+ RF + + +++
Sbjct 195 EFMKEVEDIRKTGIAWDLNEHTDGISAAGFAFKDPMGLIYAVSVPVPSHRFEKLKDKLVE 254
Query 236 AL 237
L
Sbjct 255 LL 256
>gi|332306835|ref|YP_004434686.1| transcriptional regulator, IclR family [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174164|gb|AEE23418.1| transcriptional regulator, IclR family [Glaciecola sp. 4H-3-7+YE-5]
Length=257
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/238 (37%), Positives = 125/238 (53%), Gaps = 11/238 (4%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVG-LVSVDS 69
N +GIQV+ RA L + P L L + + + LA+ST +R++ L G L++
Sbjct 6 NARQGIQVISRAANILRTLEGHPEGLSLSAIAKNVKLARSTVQRIVNSLASEGFLIAASP 65
Query 70 HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIES- 128
R LG L+ GS A I P ++ ++ GETVDLSV + M F+DQ+ +
Sbjct 66 TSRVRLGPGLVSLGSAAKADIDRVLLPHMKNLSDEV-GETVDLSVQDAENMIFIDQVTTD 124
Query 129 SYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEA--------ALCRLDPMVAEGLRRE 180
+++LRAVSAVG F + ANGKA LA + D + A AL R E L E
Sbjct 125 AHQLRAVSAVGHAFSIYCCANGKAMLATMSDDEVMAFVEAHPIKALTRSTITSTEQLLTE 184
Query 181 IVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALR 238
I IR+ G+AFD+ EH G+ A +A IAIS+P PT RF ++++ A LR
Sbjct 185 IASIRKNGVAFDKEEHCEGVCAIGVAIEDPYGRNIAISIPVPTIRFNRNKKQLAARLR 242
>gi|109898642|ref|YP_661897.1| IclR family transcriptional regulator [Pseudoalteromonas atlantica
T6c]
gi|109700923|gb|ABG40843.1| transcriptional regulator, IclR family [Pseudoalteromonas atlantica
T6c]
Length=257
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/236 (37%), Positives = 124/236 (53%), Gaps = 13/236 (5%)
Query 14 EGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVG-LVSVDSHGR 72
+GIQV+ RA L + P L L + + + LA+ST +R++ L G L++ R
Sbjct 9 QGIQVISRAANILRTLEGHPEGLSLSAIAKNVKLARSTVQRIVNSLASEGFLIAASPTSR 68
Query 73 FALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIES-SYR 131
LG L+ GS A I P ++ ++ GETVDLSV + M F+DQ+ + +++
Sbjct 69 VRLGPGLVSLGSAAKADIDRVLIPHMKNLSDEV-GETVDLSVQDAENMIFIDQVTTDTHQ 127
Query 132 LRAVSAVGLRFPLNGTANGKAALAALDDADAEA--------ALCRLDPMVAEGLRREIVE 183
LRAVSAVG F + ANGKA LA + D + A AL E L EI
Sbjct 128 LRAVSAVGHAFSIYSCANGKAMLATMSDEEVMAFVDAHPIKALTHSTITSTEQLLTEIAS 187
Query 184 IRRTGIAFDRNEHTPGISAAAIA-RRALGDNVIAISVPAPTARFLEKEQRIIAALR 238
IR+ G+AFD+ EH G+ A +A G N IAIS+P PT RF ++++ LR
Sbjct 188 IRKNGVAFDKEEHCEGVCAIGVAIEDPYGRN-IAISIPVPTVRFNRNKKQLAKQLR 242
>gi|87122108|ref|ZP_01077992.1| probable transcriptional regulatory protein [Marinomonas sp.
MED121]
gi|86162655|gb|EAQ63936.1| probable transcriptional regulatory protein [Marinomonas sp.
MED121]
Length=255
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/246 (37%), Positives = 132/246 (54%), Gaps = 13/246 (5%)
Query 7 KSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVS 66
K +++R +G+QV+ RA A L + +P L L + + LGLA+ST +R++ L E V
Sbjct 3 KESSSR-QGVQVIARAAAILRVLENQPDGLSLGAIAKALGLARSTVQRIVYALDEERFVI 61
Query 67 VDS-HGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQ 125
S GR LG L+ GS A I P +++++ + ETVDLSV G M F+DQ
Sbjct 62 AASPTGRVRLGPGLVSLGSAAKADIDRVILPYMKQLSDEIE-ETVDLSVHDGASMIFIDQ 120
Query 126 I-ESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRL------DPMVAEG-L 177
I RL AVSAVG FP++ ANGKA LAA++D + + L ++ E +
Sbjct 121 IITEKQRLMAVSAVGQPFPIHSCANGKAVLAAMNDDEIKKLLSYPLEKSTNKTLIEENEI 180
Query 178 RREIVEIRRTGIAFDRNEHTPGISAA-AIARRALGDNVIAISVPAPTARFLEKEQRIIAA 236
+EI IR+ G+AFD EH G+ A A G N +A+S+P P+ RF E ++
Sbjct 181 LKEIDNIRQMGVAFDLEEHHQGLCAVGACISGPYGQN-LALSIPVPSVRFYGNEDKLAKV 239
Query 237 LRAAAD 242
L D
Sbjct 240 LLKYCD 245
>gi|300714988|ref|YP_003739791.1| transcriptional regulator, IclR-type [Erwinia billingiae Eb661]
gi|299060824|emb|CAX57931.1| Transcriptional regulator, IclR-type [Erwinia billingiae Eb661]
Length=255
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/239 (38%), Positives = 118/239 (50%), Gaps = 9/239 (3%)
Query 6 GKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV 65
G ST + V+ RA A L + + P L L L + GL ++T RL+ L V
Sbjct 6 GGSTVKAEGESGVIARAAAVLKVLESCPSGLSLTQLARQCGLPRTTVYRLVASLEAQQFV 65
Query 66 SVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQ 125
+ G LG L + I A RP VE +AR T ETVDL V RG V+Q
Sbjct 66 MQTAEG-VTLGPALARLAAAAHTDIVALARPAVEALARRTR-ETVDLVVFRGLHAILVEQ 123
Query 126 IESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCR------LDPMVA-EGLR 178
S LR VS VG FP+N TA GKA LAAL D +A L + ++ V E L
Sbjct 124 CVSDQELRVVSPVGTAFPVNATAPGKALLAALPDDQLQALLSQPLEQRTVNTRVGREALL 183
Query 179 REIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAAL 237
+I +R G+A DR EH G+SA A+ G+ A+SV PT RF E+ + ++ AL
Sbjct 184 ADIGSVRHKGMAIDREEHALGVSALAVVLALPGNERYALSVAVPTLRFDERLESLLRAL 242
>gi|307130701|ref|YP_003882717.1| IclR family transcriptional regulator [Dickeya dadantii 3937]
gi|306528230|gb|ADM98160.1| Transcriptional regulator, IclR family [Dickeya dadantii 3937]
Length=255
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/237 (36%), Positives = 115/237 (49%), Gaps = 12/237 (5%)
Query 15 GIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RF 73
GIQV+ RA A L EI P L L + GLA+ST +R++ L LV + G R
Sbjct 8 GIQVISRAAAILREICESPDGLSLGQIASLTGLARSTVQRIVDALEGEHLVQAGAKGVRP 67
Query 74 ALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLR 133
G R LG ++ + RP + R+ T ETVDLS L G + F+D+ S R+R
Sbjct 68 GWGLRRLG--EISNPEPSHNLRPLLYRLYERTK-ETVDLSTLDGTSVLFMDRFLSEQRIR 124
Query 134 AVSAVGLRFPLNGTANGKAALAALDDAD-----AEAALCRLDP---MVAEGLRREIVEIR 185
AV + +R+P ANGKA L+ L D + L R+ P + + L +++ IR
Sbjct 125 AVPDIRVRYPAYTMANGKALLSTLSDREIHNLYGSGMLERITPNSVVNVDDLVKQLNAIR 184
Query 186 RTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALRAAAD 242
G A+DR EH A + R G +AISV PT RF I ALR D
Sbjct 185 AGGFAYDREEHAVDSCAIGLPLRIWGGLNLAISVVVPTHRFHSHRSEIETALRLCVD 241
>gi|148551009|ref|YP_001260439.1| transcriptional regulator IclR-like protein [Sphingomonas wittichii
RW1]
gi|148503420|gb|ABQ71672.1| Transcriptional regulator IclR-like protein [Sphingomonas wittichii
RW1]
Length=254
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/245 (32%), Positives = 122/245 (50%), Gaps = 21/245 (8%)
Query 11 NRDE--GIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLV-SV 67
N DE G V+ R+ A + +A+ L + +++G+A+ST +RL+ L GLV S
Sbjct 3 NSDEKGGPGVVARSAAIMRALASSQDGFSLGQIAKQVGMARSTVQRLVYALESEGLVMSG 62
Query 68 DSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIE 127
+ G+ LG +L S +A RP + +++ T ET+DL+ +R + + F+DQI
Sbjct 63 AAAGQITLGPEILRLASSMMPALATRVRPIMTKLSEQTQ-ETIDLATIRRRGVLFIDQIP 121
Query 128 SSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEA------------ALCRLDPMVAE 175
+RL AVS VG +FPL+ ++ GKA LA + A+ EA L + P++A
Sbjct 122 GQHRLAAVSHVGDQFPLHCSSVGKAFLARMKRAEIEALIGTSYERRTPHTLTEIGPLLA- 180
Query 176 GLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIA 235
+ + +TG FD EH+ GI A R + +S+P P R+ + A
Sbjct 181 ----SLEQTAQTGFGFDEEEHSEGICAIGFVLRDASSHWYGLSIPVPLQRYTATRDHLTA 236
Query 236 ALRAA 240
L A
Sbjct 237 MLSLA 241
>gi|302533756|ref|ZP_07286098.1| IclR family transcriptional regulator [Streptomyces sp. C]
gi|302442651|gb|EFL14467.1| IclR family transcriptional regulator [Streptomyces sp. C]
Length=266
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/228 (36%), Positives = 117/228 (52%), Gaps = 15/228 (6%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGERL 79
R V L+ AA PG L D+ L L KS+ LL LV +G V D+ G R+ +G R
Sbjct 26 RTVLLLEHFAARPGLHSLADIQNDLSLPKSSLYMLLRTLVNLGWVETDATGTRYGIGVRA 85
Query 80 LGFGS--VTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L GS + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 86 LLVGSSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTSVVYLATRQSQHYLRPFTR 144
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGL---RREIVE----IRRTGIA 190
VG R P++ TA GKA LA+ D + A L + V E R ++VE +R G A
Sbjct 145 VGRRLPVHSTALGKALLASHTDEEVRALLPKRLEAVTEHTITDREQLVEELALVREQGYA 204
Query 191 FDRNEHTPGISA--AAIARRALGDNVIAISVPAPTARFLEKEQRIIAA 236
DR E+T G+ AI R + ++ SVP AR E +R I A
Sbjct 205 VDREENTLGLRCFGVAIPYRTPARDAVSCSVPV--ARLTEDHERAIKA 250
>gi|317049018|ref|YP_004116666.1| IclR family transcriptional regulator [Pantoea sp. At-9b]
gi|316950635|gb|ADU70110.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
Length=261
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/225 (34%), Positives = 114/225 (51%), Gaps = 9/225 (4%)
Query 15 GIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFA 74
GIQV+ RA L+ + PG + L ++ + + L +ST +R++ L LV G
Sbjct 15 GIQVIARAAKILNALGEHPGGMSLGEIAQAVDLPRSTVQRIVAALDNAQLVRSTGAGGLR 74
Query 75 LGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRA 134
LG LL S + + RP +ER++ T+ ETV L+ G ++ V + +S LR
Sbjct 75 LGPALLKLISSVHSDVVEVVRPFLERLSAETN-ETVSLARASGTQLAIVHYVVASRELRV 133
Query 135 VSAVGLRFPLNGTANGKAALAALDDADAEA----ALCRLDPMVAEGLRR--EIV-EIRRT 187
V +GL PL T+ G+A LA D D A L M + L + E++ E+R+T
Sbjct 134 VPRMGLNLPLYSTSGGRALLALESDEDVRVMVGEAYKELTEMTIKTLPQLLELIGEVRKT 193
Query 188 GIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQR 232
G ++DR E GIS A+A L +IS+ PTARF + E R
Sbjct 194 GFSYDRGETLEGISTMAVAIDTLFGR-FSISLLVPTARFRKHEAR 237
>gi|121534031|ref|ZP_01665857.1| transcriptional regulator, IclR family [Thermosinus carboxydivorans
Nor1]
gi|121307542|gb|EAX48458.1| transcriptional regulator, IclR family [Thermosinus carboxydivorans
Nor1]
Length=258
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/243 (32%), Positives = 118/243 (49%), Gaps = 21/243 (8%)
Query 8 STTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSV 67
S +N IQ + RAV L+ +AA L ++ +GL+KSTT L+ L ++G V
Sbjct 3 SESNSGRQIQSVARAVKILEHLAASGNEDSLSNISRAIGLSKSTTHSLISTLEQLGYVHQ 62
Query 68 D-SHGRFALGERLLGFGSVTGAHI------AAAFRPTVERVARATDGETVDLSVLRGQRM 120
D S GR++LG +L G V + + R VE+ GET ++VL +
Sbjct 63 DQSTGRYSLGMKLFELGQVVYSSMDIRRLTIPHLRKLVEKY-----GETAHIAVLSKGEV 117
Query 121 WFVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALC--RLDPMVA---- 174
++D+++S + +R S +G R P T GK LA L D + E + L +
Sbjct 118 IYIDKVDSPHSIRIASQIGGRNPAYCTGVGKVLLAWLSDTELEKVMAGRVLHKFTSNTIT 177
Query 175 --EGLRREIVEIRRTGIAFDRNEHTPGISA-AAIARRALGDNVIAISVPAPTARFLEKEQ 231
E L++ ++EIR+ G A D+ E G++ AA + G + A S+ PT R EK
Sbjct 178 SYEQLKQHLLEIRQCGYALDKEEFEIGLTCVAAPIKNHRGLVIAAFSISGPTMRMNEKLN 237
Query 232 RII 234
II
Sbjct 238 MII 240
>gi|291618289|ref|YP_003521031.1| TtgV [Pantoea ananatis LMG 20103]
gi|291153319|gb|ADD77903.1| TtgV [Pantoea ananatis LMG 20103]
Length=261
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/236 (32%), Positives = 116/236 (50%), Gaps = 12/236 (5%)
Query 7 KSTTNRDE---GIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVG 63
+S++ DE GIQV+ RA L+ + PG + L ++ + + L +ST +R++ L
Sbjct 4 QSSSREDEKTGGIQVIARAAKILNALGEHPGGMSLGEIAQVVDLPRSTVQRIVAALDSAE 63
Query 64 LVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFV 123
LV G LG LL S + +P +E+++ T+ ETV L+ G ++ V
Sbjct 64 LVRSSGAGGLRLGPALLKLLSSVNTDVVDLVKPLLEKLSADTN-ETVSLARASGSQLAVV 122
Query 124 DQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEA-------ALCRLDPMVAEG 176
+ +S LR V +GL PL T+ G+A LA DAD +A L
Sbjct 123 HYVVASRELRVVPRIGLDLPLYSTSGGRALLALESDADVQARVGDDWRELTDKTVKTLAA 182
Query 177 LRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQR 232
L + I E+R+T I++DR E G+S A A + A+S+ PTARF + E R
Sbjct 183 LLQMIHEVRKTSISYDRGETLEGVSTMAFALDTIFGR-FAVSLLVPTARFKKHEAR 237
>gi|327394679|dbj|BAK12101.1| HTH-type transcriptional regulator TtgV TtgV [Pantoea ananatis
AJ13355]
Length=323
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/236 (32%), Positives = 116/236 (50%), Gaps = 12/236 (5%)
Query 7 KSTTNRDE---GIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVG 63
+S++ DE GIQV+ RA L+ + PG + L ++ + + L +ST +R++ L
Sbjct 66 QSSSREDEKTGGIQVIARAAKILNALGEHPGGMSLGEIAQVVDLPRSTVQRIVAALDSAE 125
Query 64 LVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFV 123
LV G LG LL S + +P +E+++ T+ ETV L+ G ++ V
Sbjct 126 LVRSSGAGGLRLGPALLKLLSSVNTDVVDLVKPLLEKLSADTN-ETVSLARASGSQLAVV 184
Query 124 DQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEA-------ALCRLDPMVAEG 176
+ +S LR V +GL PL T+ G+A LA DAD +A L
Sbjct 185 HYVVASRELRVVPRIGLDLPLYSTSGGRALLALESDADVQARVGDDWRELTDKTVKTLAA 244
Query 177 LRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQR 232
L + I E+R+T I++DR E G+S A A + A+S+ PTARF + E R
Sbjct 245 LLQMIHEVRKTSISYDRGETLEGVSTMAFALDTIFGR-FAVSLLVPTARFKKHEAR 299
>gi|317053334|ref|YP_004119101.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
gi|316953073|gb|ADU72545.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
Length=250
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/235 (33%), Positives = 112/235 (48%), Gaps = 9/235 (3%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSH 70
+ G QV+ RA L + +P L + +L + GLA++T RL+ L + L+ +
Sbjct 5 SEQSGSQVIARAAIILRTLETQPKGLTITELARQTGLARATVHRLVASLEQQQLLMANG- 63
Query 71 GRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSY 130
G LG L + + A RP +E + R T ETVDLSV RG V Q S
Sbjct 64 GEIRLGPALARLAAAAHTDVIALARPAMETLGRRTR-ETVDLSVYRGSHAVSVSQYVSDQ 122
Query 131 RLRAVSAVGLRFPLNGTANGKAALAALDDADAEAAL---CRLDPMVAEG----LRREIVE 183
LR VSAVG FP + TA+GKA LA +DD + + + G L ++ +
Sbjct 123 ELRVVSAVGTAFPSHCTAHGKALLAQIDDQTIASVFGEQIEVRTQYSHGNLAALLADVAQ 182
Query 184 IRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALR 238
IR G A D EH G+ ++ A + AIS+ P RF + +++AL+
Sbjct 183 IRERGYAVDTEEHALGVCGLGVSINAHLNEHYAISLAIPALRFEDNFTLLLSALK 237
>gi|118472632|ref|YP_886822.1| IclR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118173919|gb|ABK74815.1| transcriptional regulator, IclR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=240
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/230 (36%), Positives = 113/230 (50%), Gaps = 17/230 (7%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLV-EVGLV-SVDSHGRFALGER 78
R+ LD +A L L +L R GL +ST R++ L + LV VD HG ++LG
Sbjct 6 RSTLVLDALAEASKPLTLSELATRTGLPRSTVHRIVQSLERSLYLVRGVDRHG-YSLGPG 64
Query 79 LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSAV 138
LL FG + A RP + R+ R GE V+L++ G+ + VDQ+ S RL V+ V
Sbjct 65 LLKFGMNAHLRLLAGNRPLLARLVREV-GENVELAIFSGREVVVVDQLASVNRLHGVTKV 123
Query 139 GLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGLRREIV----------EIRRTG 188
G F L+ + G A LA L D D A L L P + + E+RRT
Sbjct 124 GKSFSLHASCIGLALLAHLPD-DQVAGL--LSPPLQRFTEHTVTDLPAIMGRLDEVRRTQ 180
Query 189 IAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAALR 238
IA D EH GI A A A + A++V PTARF K +R + +L+
Sbjct 181 IAVDTEEHDVGICAVATAFPGPTGALQAVAVVMPTARFRAKRERAVESLQ 230
>gi|335042085|ref|ZP_08535112.1| transcriptional regulator, IclR family [Methylophaga aminisulfidivorans
MP]
gi|333788699|gb|EGL54581.1| transcriptional regulator, IclR family [Methylophaga aminisulfidivorans
MP]
Length=249
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/228 (31%), Positives = 108/228 (48%), Gaps = 9/228 (3%)
Query 17 QVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALG 76
QV+ RA L + P + + L +R+ L +ST RL+ L + LV G LG
Sbjct 11 QVISRAATILKALQHYPQGISITALAKRVELPRSTVHRLVSSLEQASLVIHTRQG-IQLG 69
Query 77 ERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVS 136
LL + +P ++ +AR T ETVD+ V RGQ +DQI S LR +S
Sbjct 70 AALLQMTHTAHTDFISVAKPHIDTLARRTR-ETVDVCVFRGQYSLSIDQIASDQELRVMS 128
Query 137 AVGLRFPLNGTANGKAALAALDDADAEAAL-------CRLDPMVAEGLRREIVEIRRTGI 189
VG FP+ +A+GKA LA L + + + + + + L R++ IR+ G
Sbjct 129 PVGTAFPVYTSAHGKAILATLSNEEVKTVIGDKWIQRTESSHVSYDTLFRDLDLIRKNGW 188
Query 190 AFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRIIAAL 237
A D EH G+ A ++ ++ AI+V P RF + + +AL
Sbjct 189 AVDIEEHAEGVCAVGVSIQSSLAERYAIAVALPVIRFNKNMTEVTSAL 236
>gi|290956343|ref|YP_003487525.1| transcriptional regulator [Streptomyces scabiei 87.22]
gi|260645869|emb|CBG68960.1| transcriptional regulator for glyoxylate bypass [Streptomyces
scabiei 87.22]
Length=269
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/246 (33%), Positives = 116/246 (48%), Gaps = 15/246 (6%)
Query 7 KSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVS 66
+ST + G+Q L RA L+ +A G + L +L GL T RL+ LV G V
Sbjct 10 ESTKSSSGGVQSLERAFDLLERMADAGGEVGLSELSASSGLPLPTIHRLMRTLVVCGYVR 69
Query 67 VDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQI 126
S+ R+ALG RL+ G + RP + R+ T GET ++++L G + +V Q+
Sbjct 70 QQSNRRYALGPRLIRLGESASRLLGTWARPYLARLVEET-GETANMALLDGDEIVYVAQV 128
Query 127 ESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVA--------EGLR 178
S + +R + VG R + T GKA LA + + A L R A EG
Sbjct 129 PSKHSMRMFTEVGRRVLPHSTGVGKALLADVPAEEVRALLSRTGMPAATEKTITTPEGFL 188
Query 179 REIVEIRRTGIAFDRNEHTPGISAAAIARRALGDN--VIAISVPAPTARFLE-KEQRIIA 235
+ E+RR G A D NE G+ A+ ++ D+ AIS+ P R E +RI+
Sbjct 189 SALEEVRRVGYAVDDNEQEIGVRCLAV---SVPDSPTAAAISISGPAGRVTEAATERIVP 245
Query 236 ALRAAA 241
LR A
Sbjct 246 VLRQVA 251
>gi|158318700|ref|YP_001511208.1| IclR family transcriptional regulator [Frankia sp. EAN1pec]
gi|158114105|gb|ABW16302.1| transcriptional regulator, IclR family [Frankia sp. EAN1pec]
Length=283
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/249 (34%), Positives = 115/249 (47%), Gaps = 10/249 (4%)
Query 2 PPTEGKSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVE 61
PP S G+Q + RA+ L+ +AA G L + ++ R L T RLL +VE
Sbjct 27 PPEAASSQGPAVPGVQSVHRALDLLEILAAAGGRLPMAEVAARAQLPTPTVHRLLRTMVE 86
Query 62 VGLVSVDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMW 121
G + +ALG RL+ G+ A + A + + A GET +L+VL G +
Sbjct 87 RGYLRQLPDRSYALGFRLVPLGARANAMVGANASGVLHDLV-AELGETANLAVLSGDQAE 145
Query 122 FVDQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADA-----EAALCRLDPMVA-- 174
+V Q S Y +R + VG R L+ T GKA LA LDD +A L R
Sbjct 146 YVAQAPSRYAMRMFTEVGRRVDLHSTGVGKALLAQLDDDEALGIIRSRGLPRYTAHTVGT 205
Query 175 -EGLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFL-EKEQR 232
LR E+ IR G A D E G+ AIA +A+SV PTAR E +R
Sbjct 206 ETALRAELRRIRERGFALDEQEQEIGVRCVAIALDPASAPGVAVSVSGPTARMTDELVER 265
Query 233 IIAALRAAA 241
+ L+AAA
Sbjct 266 AVGLLQAAA 274
>gi|222085035|ref|YP_002543564.1| transcriptional regulator protein [Agrobacterium radiobacter
K84]
gi|221722483|gb|ACM25639.1| transcriptional regulator protein [Agrobacterium radiobacter
K84]
Length=245
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/234 (36%), Positives = 110/234 (48%), Gaps = 15/234 (6%)
Query 23 VAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHGRFALGERLLGF 82
+A LD +A +R D+ + T R L LVE GL+ +D GR+ G RLL
Sbjct 1 MALLDLVALADYPMRFTDILSLSDQPRGTLHRQLSHLVEEGLLEIDRDGRYLPGIRLLSL 60
Query 83 GSVTGAHIAAAFRPTVE---RVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSAVG 139
S + A FR E R+ + GETV L VLRG + ++D++E +R S +G
Sbjct 61 ASRSWAR--NEFRTIAEPHLRLLQERTGETVHLGVLRGIEVIYLDKVEGRQSVRMYSQIG 118
Query 140 LRFPLNGTANGKAALAALDDADAEAALCRLD-PMVAEGLRR-------EIVEIRRTGIAF 191
P T GKAAL+ LDDA EA+ L E R +I IR G AF
Sbjct 119 NASPAYCTGVGKAALSVLDDATIEASHAGLQFHAYTEHTHRGVADLLADIAAIRVRGYAF 178
Query 192 DRNEHTPGISAAAIARRALGDNVIA-ISVPAPTARFL-EKEQRIIAALRAAADS 243
DR EH GI A R+ N++A +SV P R EK + +R AA S
Sbjct 179 DREEHESGICCVAAPIRSDDGNMLAGVSVTGPAYRVTPEKLEEWAPLVRVAAAS 232
>gi|163758444|ref|ZP_02165532.1| putative IclR family transcriptional regulator [Hoeflea phototrophica
DFL-43]
gi|162284733|gb|EDQ35016.1| putative IclR family transcriptional regulator [Hoeflea phototrophica
DFL-43]
Length=283
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/231 (33%), Positives = 112/231 (49%), Gaps = 16/231 (6%)
Query 7 KSTTNRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVS 66
K+ + D G L +AV+ LD +A+ +R D+ + T R L LVE GL+S
Sbjct 25 KTRNHADTG--TLGKAVSVLDIVASSEEPMRFTDILAVSDQPRGTLHRQLSNLVEEGLLS 82
Query 67 VDSHGRFALGERLLGFGSVTGAHIAAAFRPTVERVARATD---GETVDLSVLRGQRMWFV 123
++ ++LG RLL F + A FR E RA GETV L VLRG + ++
Sbjct 83 LNRDHSYSLGLRLLKFAAKAWA--GNQFRSIAEPHLRALHNRTGETVHLGVLRGTEVIYL 140
Query 124 DQIESSYRLRAVSAVGLRFPLNGTANGKAALAALDDADAEAALCRLD--------PMVAE 175
D++ES +R S +G P+ T GKAA++AL + + ++ + E
Sbjct 141 DKVESRQAVRMYSQIGNSSPVFCTGVGKAAMSALGEEALSEVISKISFRRFTEHTLVTPE 200
Query 176 GLRREIVEIRRTGIAFDRNEHTPGISAAAIARRALGDNVIA-ISVPAPTAR 225
LR EI +IR +G A+DR EH GI A + +A +SV P R
Sbjct 201 ALRAEIGDIRESGNAYDREEHELGIRCVAAPIYTPDRSFVAGVSVTGPAYR 251
>gi|326440345|ref|ZP_08215079.1| IclR family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
Length=242
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/229 (34%), Positives = 113/229 (50%), Gaps = 21/229 (9%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 2 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 61
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 62 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 120
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVA----------EGLRREIVEIRRT 187
VG R P + T+ GKA LA D A L P ++ E L RE+ +R
Sbjct 121 VGRRLPAHSTSLGKALLATYSDEQVRAM---LPPTLSSLTEHTTTDREKLIRELHTVREQ 177
Query 188 GIAFDRNEHTPGISA--AAIARRALGDNVIAISVPAPTARFLEKEQRII 234
G A DR E+T G+ AI R + I+ SVP AR +++I
Sbjct 178 GYAVDREENTLGLRCFGVAIPYRTPARDAISCSVPV--ARLTPAHEQLI 224
>gi|294811920|ref|ZP_06770563.1| IclR-family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294324519|gb|EFG06162.1| IclR-family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
Length=259
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/229 (34%), Positives = 113/229 (50%), Gaps = 21/229 (9%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 19 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 78
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 79 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 137
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVA----------EGLRREIVEIRRT 187
VG R P + T+ GKA LA D A L P ++ E L RE+ +R
Sbjct 138 VGRRLPAHSTSLGKALLATYSDEQVRAM---LPPTLSSLTEHTTTDREKLIRELHTVREQ 194
Query 188 GIAFDRNEHTPGISA--AAIARRALGDNVIAISVPAPTARFLEKEQRII 234
G A DR E+T G+ AI R + I+ SVP AR +++I
Sbjct 195 GYAVDREENTLGLRCFGVAIPYRTPARDAISCSVPV--ARLTPAHEQLI 241
>gi|302546398|ref|ZP_07298740.1| putative IclR-family transcriptional regulator [Streptomyces
hygroscopicus ATCC 53653]
gi|302464016|gb|EFL27109.1| putative IclR-family transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length=256
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/233 (36%), Positives = 112/233 (49%), Gaps = 12/233 (5%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 16 RTVELLEFFAGRPGMHSLASVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 75
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 76 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 134
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCR-LDPMVA------EGLRREIVEIRRTGIA 190
VG R P + T+ GKA LA D L L P+ E L E+ IR G A
Sbjct 135 VGRRLPAHSTSLGKALLATYTDEQVRKLLPETLSPLTEHTITDREKLIEELHLIREQGYA 194
Query 191 FDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFL-EKEQRIIAALRAAAD 242
DR E+T G+ IA + AIS P AR EQ I AL A D
Sbjct 195 VDREENTLGLRCFGIAIPYRTPSRDAISCSVPVARLTGAHEQMIKDALFDARD 247
>gi|297195104|ref|ZP_06912502.1| IclR family transcriptional regulator [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152628|gb|EFH31886.1| IclR family transcriptional regulator [Streptomyces pristinaespiralis
ATCC 25486]
Length=256
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/224 (34%), Positives = 110/224 (50%), Gaps = 11/224 (4%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 16 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 75
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 76 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 134
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCR-LDPMVAEGL--RREIVE----IRRTGIA 190
VG R P + T+ GKA LA D L L P+ L R +++E IR G A
Sbjct 135 VGRRLPAHSTSLGKALLATYSDEQVRKMLPETLAPLTEHTLTDREKLIEELHLIREQGYA 194
Query 191 FDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRII 234
DR E+T G+ IA AIS P AR +++I
Sbjct 195 VDREENTLGLRCFGIAIPYRTPARDAISCSVPVARLTPAHEQMI 238
>gi|300717818|ref|YP_003742621.1| transcriptional regulator, IclR family [Erwinia billingiae Eb661]
gi|299063654|emb|CAX60774.1| Transcriptional regulator, IclR family [Erwinia billingiae Eb661]
Length=260
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/230 (33%), Positives = 111/230 (49%), Gaps = 15/230 (6%)
Query 11 NRDEGIQVLRRAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSH 70
R GIQV+ RA LD + P + L ++ + + L +ST +R++ L V LV
Sbjct 11 ERTGGIQVISRAAKILDALGNRPDGMSLGEIAQAVDLPRSTVQRIVAALDSVQLVRSPGA 70
Query 71 GRFALGERLLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSY 130
G LG LL + + A +P ++ + AT GETV L+ G ++ V + +
Sbjct 71 GGVRLGPALLRLIATLHTDVVAIAQPWLQALCDAT-GETVSLARASGLQLAIVHYVVADR 129
Query 131 RLRAVSAVGLRFPLNGTANGKAALAALDD-------ADAEAALCRLDPMVAEGLRREIVE 183
LR V +GL PL T+ GKA LA D DA A+ L L + E
Sbjct 130 ELRVVPRIGLNLPLYSTSGGKALLALDSDEQARAVVGDAYEAITDLTVKAFPELIERLKE 189
Query 184 IRRTGIAFDRNEHTPGISAAAIARRALGDNVI---AISVPAPTARFLEKE 230
IRRTG+++DR E GIS A+A D ++ +IS+ P+ RF + E
Sbjct 190 IRRTGLSYDRGETLEGISTMAVAI----DTILGRFSISLLVPSTRFQKHE 235
>gi|320011490|gb|ADW06340.1| transcriptional regulator, IclR family [Streptomyces flavogriseus
ATCC 33331]
Length=256
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/224 (33%), Positives = 110/224 (50%), Gaps = 11/224 (4%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 16 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 75
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 76 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 134
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGL---RREIVE----IRRTGIA 190
VG R P + T+ GKA LA D L P + E R +++E IR G A
Sbjct 135 VGRRLPAHSTSLGKALLATHSDEQVRTMLPETLPALTEHTLTDREKLIEELHVIREQGYA 194
Query 191 FDRNEHTPGISAAAIARRALGDNVIAISVPAPTARFLEKEQRII 234
DR E+T G+ +A + AIS P AR ++++
Sbjct 195 VDREENTLGLRCFGVAIPYRTPSRDAISCSVPVARLTPAHEQMV 238
>gi|328881565|emb|CCA54804.1| Transcriptional regulator, IclR family [Streptomyces venezuelae
ATCC 10712]
Length=270
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/226 (34%), Positives = 113/226 (50%), Gaps = 15/226 (6%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 30 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 89
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 90 LLVGTSYIDGDEVVAASRPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 148
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGL---RREIVE----IRRTGIA 190
VG R P + T+ GKA LA D L P + E R +++E IR GI+
Sbjct 149 VGRRLPAHSTSLGKALLATHTDDQVRKLLPETLPALTEHTITDREQLIEELHAIREQGIS 208
Query 191 FDRNEHTPGISA--AAIARRALGDNVIAISVPAPTARFLEKEQRII 234
DR E+T G+ AI R + I+ SVP AR +++I
Sbjct 209 VDREENTLGLRCFGVAIPYRTPARDAISCSVPV--ARLTPAHEQMI 252
>gi|297198799|ref|ZP_06916196.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
29083]
gi|197711284|gb|EDY55318.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
29083]
Length=257
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/226 (33%), Positives = 111/226 (50%), Gaps = 15/226 (6%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 17 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 76
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 77 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 135
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVA-------EGLRREIVEIRRTGIA 190
VG R P + T+ GKA L+ D L P + E L E+ +IR G +
Sbjct 136 VGRRLPAHSTSLGKALLSTYSDEQVRKMLPETLPALTEHTITDREKLIEELHQIREQGFS 195
Query 191 FDRNEHTPGISA--AAIARRALGDNVIAISVPAPTARFLEKEQRII 234
DR E+T G+ AI R + I+ SVP AR ++++
Sbjct 196 VDREENTLGLRCFGVAIPYRTPARDAISCSVPV--ARLTPAHEQMV 239
>gi|344998911|ref|YP_004801765.1| IclR family transcriptional regulator [Streptomyces sp. SirexAA-E]
gi|344314537|gb|AEN09225.1| transcriptional regulator, IclR family [Streptomyces sp. SirexAA-E]
Length=264
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/212 (35%), Positives = 107/212 (51%), Gaps = 13/212 (6%)
Query 21 RAVAALDEIAAEPGHLRLVDLCERLGLAKSTTRRLLVGLVEVGLVSVDSHG-RFALGER- 78
R V L+ A PG L + E +G KS+ LL LVE+G V D+ G R+ +G R
Sbjct 24 RTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRA 83
Query 79 -LLGFGSVTGAHIAAAFRPTVERVARATDGETVDLSVLRGQRMWFVDQIESSYRLRAVSA 137
L+G + G + AA RPT++R++ T ET+ L+ L G + ++ +S + LR +
Sbjct 84 LLVGTSYIDGDEVVAAARPTLDRLSDDTT-ETIHLARLDGTNVVYLATRQSQHYLRPFTR 142
Query 138 VGLRFPLNGTANGKAALAALDDADAEAALCRLDPMVAEGL---RREIVE----IRRTGIA 190
VG R P + T+ GKA LA D A L P + E R +++E +R G A
Sbjct 143 VGRRLPAHSTSLGKALLATHSDEQVRAMLPETLPALTEHTITDREKLIEELRLVREQGYA 202
Query 191 FDRNEHTPGISA--AAIARRALGDNVIAISVP 220
DR E+T G+ AI R + I+ SVP
Sbjct 203 VDREENTLGLRCFGVAIPYRTPARDAISCSVP 234
Lambda K H
0.321 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 352647919680
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40