BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1778c

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841247|ref|NP_336284.1|  hypothetical protein MT1828 [Mycoba...   304    2e-81
gi|15608916|ref|NP_216294.1|  hypothetical protein Rv1778c [Mycob...   304    3e-81
gi|31792967|ref|NP_855460.1|  hypothetical protein Mb1807c [Mycob...   302    1e-80
gi|307084389|ref|ZP_07493502.1|  hypothetical protein TMLG_01046 ...   288    2e-76
gi|183982666|ref|YP_001850957.1|  hypothetical protein MMAR_2659 ...   263    8e-69
gi|240172008|ref|ZP_04750667.1|  hypothetical protein MkanA1_2202...   259    7e-68
gi|118618479|ref|YP_906811.1|  hypothetical protein MUL_3098 [Myc...   201    3e-50
gi|117928602|ref|YP_873153.1|  hypothetical protein Acel_1395 [Ac...  85.9    2e-15
gi|284045077|ref|YP_003395417.1|  hypothetical protein Cwoe_3625 ...  77.0    8e-13
gi|284044566|ref|YP_003394906.1|  hypothetical protein Cwoe_3112 ...  73.2    1e-11
gi|256372375|ref|YP_003110199.1|  hypothetical protein Afer_1604 ...  48.1    5e-04
gi|312194791|ref|YP_004014852.1|  hypothetical protein FraEuI1c_0...  41.6    0.041
gi|254582154|ref|XP_002497062.1|  ZYRO0D14542p [Zygosaccharomyces...  38.1    0.49 
gi|288920630|ref|ZP_06414934.1|  hypothetical protein FrEUN1fDRAF...  37.7    0.55 
gi|341819954|emb|CCC56171.1|  DNA gyrase subunit A [Weissella tha...  36.6    1.2  
gi|319793583|ref|YP_004155223.1|  type VI secretion protein icmf ...  36.2    1.8  
gi|241895512|ref|ZP_04782808.1|  DNA gyrase subunit A [Weissella ...  33.9    7.9  
gi|304394764|ref|ZP_07376662.1|  putative hemolysin-type calcium-...  33.9    9.1  


>gi|15841247|ref|NP_336284.1| hypothetical protein MT1828 [Mycobacterium tuberculosis CDC1551]
 gi|148822994|ref|YP_001287748.1| hypothetical protein TBFG_11809 [Mycobacterium tuberculosis F11]
 gi|167967973|ref|ZP_02550250.1| hypothetical protein MtubH3_08008 [Mycobacterium tuberculosis 
H37Ra]
 36 more sequence titles
 Length=168

 Score =  304 bits (779),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct  20   MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  79

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120
            LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct  80   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  139

Query  121  RVEVEGYERATAVEAFIVAGGGHPPASCG  149
            RVEVEGYERATAVEAFIVAGGGHPPASCG
Sbjct  140  RVEVEGYERATAVEAFIVAGGGHPPASCG  168


>gi|15608916|ref|NP_216294.1| hypothetical protein Rv1778c [Mycobacterium tuberculosis H37Rv]
 gi|121637680|ref|YP_977903.1| hypothetical protein BCG_1811c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148661586|ref|YP_001283109.1| hypothetical protein MRA_1794 [Mycobacterium tuberculosis H37Ra]
 33 more sequence titles
 Length=149

 Score =  304 bits (779),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120
            LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120

Query  121  RVEVEGYERATAVEAFIVAGGGHPPASCG  149
            RVEVEGYERATAVEAFIVAGGGHPPASCG
Sbjct  121  RVEVEGYERATAVEAFIVAGGGHPPASCG  149


>gi|31792967|ref|NP_855460.1| hypothetical protein Mb1807c [Mycobacterium bovis AF2122/97]
 gi|31618558|emb|CAD94510.1| HYPOTHETICAL PROTEIN Mb1807c [Mycobacterium bovis AF2122/97]
Length=149

 Score =  302 bits (773),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 148/149 (99%), Positives = 148/149 (99%), Gaps = 0/149 (0%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            MRVSLFLSDAAQADAQSGKVHALGLGWRQCQ PTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQRPTPPFALVLFLDIDWDETNKQHQLKCQL  60

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120
            LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120

Query  121  RVEVEGYERATAVEAFIVAGGGHPPASCG  149
            RVEVEGYERATAVEAFIVAGGGHPPASCG
Sbjct  121  RVEVEGYERATAVEAFIVAGGGHPPASCG  149


>gi|307084389|ref|ZP_07493502.1| hypothetical protein TMLG_01046 [Mycobacterium tuberculosis SUMu012]
 gi|308379031|ref|ZP_07484764.2| hypothetical protein TMJG_00023 [Mycobacterium tuberculosis SUMu010]
 gi|308380188|ref|ZP_07488981.2| hypothetical protein TMKG_00024 [Mycobacterium tuberculosis SUMu011]
 gi|308358421|gb|EFP47272.1| hypothetical protein TMJG_00023 [Mycobacterium tuberculosis SUMu010]
 gi|308362347|gb|EFP51198.1| hypothetical protein TMKG_00024 [Mycobacterium tuberculosis SUMu011]
 gi|308366011|gb|EFP54862.1| hypothetical protein TMLG_01046 [Mycobacterium tuberculosis SUMu012]
Length=203

 Score =  288 bits (737),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%), Gaps = 0/141 (0%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct  20   MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  79

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120
            LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct  80   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  139

Query  121  RVEVEGYERATAVEAFIVAGG  141
            RVEVEGYERATAVEAFIVAGG
Sbjct  140  RVEVEGYERATAVEAFIVAGG  160


>gi|183982666|ref|YP_001850957.1| hypothetical protein MMAR_2659 [Mycobacterium marinum M]
 gi|183175992|gb|ACC41102.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=149

 Score =  263 bits (671),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 124/146 (85%), Positives = 136/146 (94%), Gaps = 0/146 (0%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            M+VS+FL+DAA AD QSGK+H LGLGWRQCQTPTPPFALVLF+DIDW+ETNKQH+LKCQL
Sbjct  1    MKVSVFLADAAHADVQSGKIHTLGLGWRQCQTPTPPFALVLFVDIDWNETNKQHKLKCQL  60

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120
            LT DGD VVVPGP+GPQR+LFEA+AEAGR PGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct  61   LTTDGDLVVVPGPNGPQRVLFEASAEAGRPPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120

Query  121  RVEVEGYERATAVEAFIVAGGGHPPA  146
            RVEVEGY RATAVE+F+V G G PPA
Sbjct  121  RVEVEGYARATAVESFVVTGPGVPPA  146


>gi|240172008|ref|ZP_04750667.1| hypothetical protein MkanA1_22020 [Mycobacterium kansasii ATCC 
12478]
Length=149

 Score =  259 bits (663),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 125/145 (87%), Positives = 133/145 (92%), Gaps = 0/145 (0%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            M+VSL L+DAAQAD QSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETN+QH+L CQL
Sbjct  1    MKVSLLLADAAQADPQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNRQHKLTCQL  60

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW  120
            LT DGDPVVV GPHGPQ +LFEAAAEAGR PGAIHGTSVRMPL L+IP GIPLEPG+YEW
Sbjct  61   LTTDGDPVVVTGPHGPQPMLFEAAAEAGRMPGAIHGTSVRMPLALSIPPGIPLEPGLYEW  120

Query  121  RVEVEGYERATAVEAFIVAGGGHPP  145
            RVEVEG+E ATAVEAFIV GGGH P
Sbjct  121  RVEVEGFEHATAVEAFIVTGGGHSP  145


>gi|118618479|ref|YP_906811.1| hypothetical protein MUL_3098 [Mycobacterium ulcerans Agy99]
 gi|118570589|gb|ABL05340.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=143

 Score =  201 bits (512),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 97/118 (83%), Positives = 106/118 (90%), Gaps = 0/118 (0%)

Query  29   QCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLTADGDPVVVPGPHGPQRILFEAAAEAG  88
              + P P FALVLF+DIDW+ETNKQH+LKCQLLT DGD VVVPGP+GPQR+LFEA+AEAG
Sbjct  23   SAKHPRPLFALVLFVDIDWNETNKQHKLKCQLLTTDGDLVVVPGPNGPQRVLFEASAEAG  82

Query  89   RAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEWRVEVEGYERATAVEAFIVAGGGHPPA  146
            R PGAIHGTSVRMPLTLNIPAGIPLEPGIYEWRVEVEGY RATAVE+F+V G G PPA
Sbjct  83   RPPGAIHGTSVRMPLTLNIPAGIPLEPGIYEWRVEVEGYARATAVESFVVTGPGVPPA  140


>gi|117928602|ref|YP_873153.1| hypothetical protein Acel_1395 [Acidothermus cellulolyticus 11B]
 gi|117649065|gb|ABK53167.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B]
Length=143

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 52/142 (37%), Positives = 76/142 (54%), Gaps = 5/142 (3%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQT-PT---PPFALVLFLDIDWDETNKQHQL  56
            M  +L L DAA+ D  +GKVH LG GW      PT   P  A+V+ + + W  T + H L
Sbjct  1    MHATLLLCDAAEVDP-AGKVHMLGAGWTVVGAGPTGALPGQAVVVLVHVPWHRTGEDHLL  59

Query  57   KCQLLTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPG  116
            +  L  ADG  V+   P  PQ ++ + A    R PGA  G ++ +P+ + I  G+ L PG
Sbjct  60   RLSLEDADGRAVLAGAPENPQPLVHQQAFRVQRPPGAPEGITIDVPVVVTIGPGLVLPPG  119

Query  117  IYEWRVEVEGYERATAVEAFIV  138
             Y WR+E++G  R   + +F V
Sbjct  120  RYAWRLEIDGETREDWLVSFHV  141


>gi|284045077|ref|YP_003395417.1| hypothetical protein Cwoe_3625 [Conexibacter woesei DSM 14684]
 gi|283949298|gb|ADB52042.1| hypothetical protein Cwoe_3625 [Conexibacter woesei DSM 14684]
Length=150

 Score = 77.0 bits (188),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 44/127 (35%), Positives = 67/127 (53%), Gaps = 4/127 (3%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            +RV++ L+D AQ     GK++ +G GW        PFA+    ++ W   ++ H  + +L
Sbjct  10   LRVNVMLADYAQV--ADGKLNVIGGGWSVTGPEPSPFAIAGLFEVPWHLADQLHTFRFEL  67

Query  61   LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI-YE  119
            +  DG  V+   P G Q + FE + E G    A  G+  R+P  LN    +PLEPG  YE
Sbjct  68   IDMDGTAVMCRTPDGMQEVFFEGSFELGHPEDAKPGSVQRVPFALN-GGMLPLEPGTHYE  126

Query  120  WRVEVEG  126
            WR+ V+G
Sbjct  127  WRLSVDG  133


>gi|284044566|ref|YP_003394906.1| hypothetical protein Cwoe_3112 [Conexibacter woesei DSM 14684]
 gi|283948787|gb|ADB51531.1| hypothetical protein Cwoe_3112 [Conexibacter woesei DSM 14684]
Length=138

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 45/129 (35%), Positives = 68/129 (53%), Gaps = 11/129 (8%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTP--PFALVLFLDIDWDETNKQHQLKC  58
            M   L L D   A+A +GK++ +G  W   Q P      AL + + + WDE +  H+L  
Sbjct  1    MEADLLLCD--HAEAINGKLYIMGAAWNLLQAPEQAITIALAIVVKVAWDEADTSHELIA  58

Query  59   QLLTADGDPVVVPG-PHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI  117
            +LL ADG+ +V+ G P  P         E GR  G   G+++ MPL  N+ +G+ L  G 
Sbjct  59   ELLDADGERIVMNGEPVAPS-----GRFELGRPTGVKPGSTLNMPLAFNL-SGLVLGVGQ  112

Query  118  YEWRVEVEG  126
            YEWR+ ++G
Sbjct  113  YEWRLTIDG  121


>gi|256372375|ref|YP_003110199.1| hypothetical protein Afer_1604 [Acidimicrobium ferrooxidans DSM 
10331]
 gi|256008959|gb|ACU54526.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=161

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 35/122 (29%), Positives = 54/122 (45%), Gaps = 4/122 (3%)

Query  6    FLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLTADG  65
             L DAAQ     GK++ LG GW        P A+ + L++ W E    H  +  L    G
Sbjct  1    MLCDAAQV--CDGKLYILGGGWSMTVAGLAPMAIAMRLELAWGEAPNPHHWELFLQDEAG  58

Query  66   DPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNI-PAGIPLEPGIYEWRVEV  124
            + V +  P GPQ +      + G   G   G+ + + L + I P  +P     Y W++ V
Sbjct  59   EQVTIETPEGPQPVEIRGDFQLGTPQGVPLGSDIPLNLAVTIGPLPLPAN-SRYRWQLVV  117

Query  125  EG  126
            +G
Sbjct  118  DG  119


>gi|312194791|ref|YP_004014852.1| hypothetical protein FraEuI1c_0908 [Frankia sp. EuI1c]
 gi|311226127|gb|ADP78982.1| hypothetical protein FraEuI1c_0908 [Frankia sp. EuI1c]
Length=261

 Score = 41.6 bits (96),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 23/71 (33%), Positives = 36/71 (51%), Gaps = 2/71 (2%)

Query  1    MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL  60
            +++++ L DAAQ     GK++ LG GW        P AL + + + WD  N    L+ +L
Sbjct  47   VKLTMILCDAAQV--AGGKLYILGGGWNLIGPSPAPSALGILIALPWDRANAPCTLRLKL  104

Query  61   LTADGDPVVVP  71
               DG P + P
Sbjct  105  HDQDGAPAIQP  115


>gi|254582154|ref|XP_002497062.1| ZYRO0D14542p [Zygosaccharomyces rouxii]
 gi|238939954|emb|CAR28129.1| ZYRO0D14542p [Zygosaccharomyces rouxii]
Length=263

 Score = 38.1 bits (87),  Expect = 0.49, Method: Compositional matrix adjust.
 Identities = 29/94 (31%), Positives = 39/94 (42%), Gaps = 13/94 (13%)

Query  14   DAQSGKVHALGLGWRQCQTPT------PPFALVLFLDIDWDETNKQHQLKC--QLLTADG  65
            D+   KV   G  W     P         F L++  D  ++ T  +  L+C   LL  DG
Sbjct  138  DSNDRKVVVEGYIWGNEYEPILSHTGGSKFDLIILSDCVFNHTEHRKLLRCIKDLLANDG  197

Query  66   DPVVVPGPHGPQRI-----LFEAAAEAGRAPGAI  94
              +VV  PH P+ +      FE A E G AP  I
Sbjct  198  KALVVFSPHRPRLLDVDLSFFETAKEFGLAPEFI  231


>gi|288920630|ref|ZP_06414934.1| hypothetical protein FrEUN1fDRAFT_4632 [Frankia sp. EUN1f]
 gi|288347970|gb|EFC82243.1| hypothetical protein FrEUN1fDRAFT_4632 [Frankia sp. EUN1f]
Length=103

 Score = 37.7 bits (86),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 31/68 (46%), Gaps = 2/68 (2%)

Query  5   LFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLTAD  64
           + L DAAQ     GK++ LG GW        P AL L +++ WD  N    L+ +L   D
Sbjct  1   MILCDAAQVS--EGKLYILGGGWNLVGPSPAPSALGLLIEVPWDRANSPFTLQLELHDQD  58

Query  65  GDPVVVPG  72
                 PG
Sbjct  59  AHQPSSPG  66


>gi|341819954|emb|CCC56171.1| DNA gyrase subunit A [Weissella thailandensis fsh4-2]
Length=863

 Score = 36.6 bits (83),  Expect = 1.2, Method: Composition-based stats.
 Identities = 25/85 (30%), Positives = 42/85 (50%), Gaps = 4/85 (4%)

Query  60   LLTADGDPVVVPGPHGPQRILF--EAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI  117
            +L  DGD  ++ G HG   + F  EA    GR+   + G ++R P    + A + +E G 
Sbjct  656  VLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLR-PDDYVVGAQVLIENG-  713

Query  118  YEWRVEVEGYERATAVEAFIVAGGG  142
            +   +   GY + TAV+ + + G G
Sbjct  714  HVLIITENGYGKQTAVDQYPIKGRG  738


>gi|319793583|ref|YP_004155223.1| type VI secretion protein icmf [Variovorax paradoxus EPS]
 gi|315596046|gb|ADU37112.1| type VI secretion protein IcmF [Variovorax paradoxus EPS]
Length=1211

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 24/85 (29%), Positives = 38/85 (45%), Gaps = 18/85 (21%)

Query  45    IDWDETNKQHQLKCQLLTADGDP---VVVPGPHGPQRILFEAAAEAGRAPGAIHGT----  97
             + W      +Q++ Q+ TA+G P   +V  GP    R+  +A+  AGR+P + + T    
Sbjct  1121  VKWPGPRNSNQVRLQVTTANGTPAGGIVTEGPWALHRLFDKASISAGRSPESFNATFDLQ  1180

Query  98    -----------SVRMPLTLNIPAGI  111
                        SV  PL LN  +G 
Sbjct  1181  GKKVVLAVTANSVYNPLRLNQMSGF  1205


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
Length=858

 Score = 33.9 bits (76),  Expect = 7.9, Method: Composition-based stats.
 Identities = 23/85 (28%), Positives = 42/85 (50%), Gaps = 4/85 (4%)

Query  60   LLTADGDPVVVPGPHGPQRILF--EAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI  117
            +L  DGD  ++ G HG   + F  EA    GR+   + G ++R P    + A + ++ G 
Sbjct  656  VLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLR-PDDYVVGAQVLIDNG-  713

Query  118  YEWRVEVEGYERATAVEAFIVAGGG  142
            +   +  +GY + T V+ + + G G
Sbjct  714  HVLIITEKGYGKQTPVDQYPIKGRG  738


>gi|304394764|ref|ZP_07376662.1| putative hemolysin-type calcium-binding region [Ahrensia sp. 
R2A130]
 gi|303293063|gb|EFL87465.1| putative hemolysin-type calcium-binding region [Ahrensia sp. 
R2A130]
Length=1865

 Score = 33.9 bits (76),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 29/111 (27%), Positives = 45/111 (41%), Gaps = 9/111 (8%)

Query  9     DAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLT----AD  64
             D A   AQS  ++ +  G R   TP     ++ F+D   D     +Q    LLT    AD
Sbjct  1162  DVANGQAQSETIYYIVSGLRDPGTP-----ILAFVDSAGDPIGLNNQDGTWLLTPAEIAD  1216

Query  65    GDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEP  115
              + +   G  G   +     A       A + T+  + +T N  +G P+EP
Sbjct  1217  LNVITPSGESGTANLTLTTVATENDGDQATNATTFTIDITANGVSGTPIEP  1267



Lambda     K      H
   0.319    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130023393564


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40