BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1778c
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841247|ref|NP_336284.1| hypothetical protein MT1828 [Mycoba... 304 2e-81
gi|15608916|ref|NP_216294.1| hypothetical protein Rv1778c [Mycob... 304 3e-81
gi|31792967|ref|NP_855460.1| hypothetical protein Mb1807c [Mycob... 302 1e-80
gi|307084389|ref|ZP_07493502.1| hypothetical protein TMLG_01046 ... 288 2e-76
gi|183982666|ref|YP_001850957.1| hypothetical protein MMAR_2659 ... 263 8e-69
gi|240172008|ref|ZP_04750667.1| hypothetical protein MkanA1_2202... 259 7e-68
gi|118618479|ref|YP_906811.1| hypothetical protein MUL_3098 [Myc... 201 3e-50
gi|117928602|ref|YP_873153.1| hypothetical protein Acel_1395 [Ac... 85.9 2e-15
gi|284045077|ref|YP_003395417.1| hypothetical protein Cwoe_3625 ... 77.0 8e-13
gi|284044566|ref|YP_003394906.1| hypothetical protein Cwoe_3112 ... 73.2 1e-11
gi|256372375|ref|YP_003110199.1| hypothetical protein Afer_1604 ... 48.1 5e-04
gi|312194791|ref|YP_004014852.1| hypothetical protein FraEuI1c_0... 41.6 0.041
gi|254582154|ref|XP_002497062.1| ZYRO0D14542p [Zygosaccharomyces... 38.1 0.49
gi|288920630|ref|ZP_06414934.1| hypothetical protein FrEUN1fDRAF... 37.7 0.55
gi|341819954|emb|CCC56171.1| DNA gyrase subunit A [Weissella tha... 36.6 1.2
gi|319793583|ref|YP_004155223.1| type VI secretion protein icmf ... 36.2 1.8
gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella ... 33.9 7.9
gi|304394764|ref|ZP_07376662.1| putative hemolysin-type calcium-... 33.9 9.1
>gi|15841247|ref|NP_336284.1| hypothetical protein MT1828 [Mycobacterium tuberculosis CDC1551]
gi|148822994|ref|YP_001287748.1| hypothetical protein TBFG_11809 [Mycobacterium tuberculosis F11]
gi|167967973|ref|ZP_02550250.1| hypothetical protein MtubH3_08008 [Mycobacterium tuberculosis
H37Ra]
36 more sequence titles
Length=168
Score = 304 bits (779), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct 20 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 79
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct 80 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 139
Query 121 RVEVEGYERATAVEAFIVAGGGHPPASCG 149
RVEVEGYERATAVEAFIVAGGGHPPASCG
Sbjct 140 RVEVEGYERATAVEAFIVAGGGHPPASCG 168
>gi|15608916|ref|NP_216294.1| hypothetical protein Rv1778c [Mycobacterium tuberculosis H37Rv]
gi|121637680|ref|YP_977903.1| hypothetical protein BCG_1811c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661586|ref|YP_001283109.1| hypothetical protein MRA_1794 [Mycobacterium tuberculosis H37Ra]
33 more sequence titles
Length=149
Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
Query 121 RVEVEGYERATAVEAFIVAGGGHPPASCG 149
RVEVEGYERATAVEAFIVAGGGHPPASCG
Sbjct 121 RVEVEGYERATAVEAFIVAGGGHPPASCG 149
>gi|31792967|ref|NP_855460.1| hypothetical protein Mb1807c [Mycobacterium bovis AF2122/97]
gi|31618558|emb|CAD94510.1| HYPOTHETICAL PROTEIN Mb1807c [Mycobacterium bovis AF2122/97]
Length=149
Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/149 (99%), Positives = 148/149 (99%), Gaps = 0/149 (0%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
MRVSLFLSDAAQADAQSGKVHALGLGWRQCQ PTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQRPTPPFALVLFLDIDWDETNKQHQLKCQL 60
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
Query 121 RVEVEGYERATAVEAFIVAGGGHPPASCG 149
RVEVEGYERATAVEAFIVAGGGHPPASCG
Sbjct 121 RVEVEGYERATAVEAFIVAGGGHPPASCG 149
>gi|307084389|ref|ZP_07493502.1| hypothetical protein TMLG_01046 [Mycobacterium tuberculosis SUMu012]
gi|308379031|ref|ZP_07484764.2| hypothetical protein TMJG_00023 [Mycobacterium tuberculosis SUMu010]
gi|308380188|ref|ZP_07488981.2| hypothetical protein TMKG_00024 [Mycobacterium tuberculosis SUMu011]
gi|308358421|gb|EFP47272.1| hypothetical protein TMJG_00023 [Mycobacterium tuberculosis SUMu010]
gi|308362347|gb|EFP51198.1| hypothetical protein TMKG_00024 [Mycobacterium tuberculosis SUMu011]
gi|308366011|gb|EFP54862.1| hypothetical protein TMLG_01046 [Mycobacterium tuberculosis SUMu012]
Length=203
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/141 (100%), Positives = 141/141 (100%), Gaps = 0/141 (0%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL
Sbjct 20 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 79
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct 80 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 139
Query 121 RVEVEGYERATAVEAFIVAGG 141
RVEVEGYERATAVEAFIVAGG
Sbjct 140 RVEVEGYERATAVEAFIVAGG 160
>gi|183982666|ref|YP_001850957.1| hypothetical protein MMAR_2659 [Mycobacterium marinum M]
gi|183175992|gb|ACC41102.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=149
Score = 263 bits (671), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 124/146 (85%), Positives = 136/146 (94%), Gaps = 0/146 (0%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
M+VS+FL+DAA AD QSGK+H LGLGWRQCQTPTPPFALVLF+DIDW+ETNKQH+LKCQL
Sbjct 1 MKVSVFLADAAHADVQSGKIHTLGLGWRQCQTPTPPFALVLFVDIDWNETNKQHKLKCQL 60
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
LT DGD VVVPGP+GPQR+LFEA+AEAGR PGAIHGTSVRMPLTLNIPAGIPLEPGIYEW
Sbjct 61 LTTDGDLVVVPGPNGPQRVLFEASAEAGRPPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
Query 121 RVEVEGYERATAVEAFIVAGGGHPPA 146
RVEVEGY RATAVE+F+V G G PPA
Sbjct 121 RVEVEGYARATAVESFVVTGPGVPPA 146
>gi|240172008|ref|ZP_04750667.1| hypothetical protein MkanA1_22020 [Mycobacterium kansasii ATCC
12478]
Length=149
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 125/145 (87%), Positives = 133/145 (92%), Gaps = 0/145 (0%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
M+VSL L+DAAQAD QSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETN+QH+L CQL
Sbjct 1 MKVSLLLADAAQADPQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNRQHKLTCQL 60
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEW 120
LT DGDPVVV GPHGPQ +LFEAAAEAGR PGAIHGTSVRMPL L+IP GIPLEPG+YEW
Sbjct 61 LTTDGDPVVVTGPHGPQPMLFEAAAEAGRMPGAIHGTSVRMPLALSIPPGIPLEPGLYEW 120
Query 121 RVEVEGYERATAVEAFIVAGGGHPP 145
RVEVEG+E ATAVEAFIV GGGH P
Sbjct 121 RVEVEGFEHATAVEAFIVTGGGHSP 145
>gi|118618479|ref|YP_906811.1| hypothetical protein MUL_3098 [Mycobacterium ulcerans Agy99]
gi|118570589|gb|ABL05340.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=143
Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/118 (83%), Positives = 106/118 (90%), Gaps = 0/118 (0%)
Query 29 QCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLTADGDPVVVPGPHGPQRILFEAAAEAG 88
+ P P FALVLF+DIDW+ETNKQH+LKCQLLT DGD VVVPGP+GPQR+LFEA+AEAG
Sbjct 23 SAKHPRPLFALVLFVDIDWNETNKQHKLKCQLLTTDGDLVVVPGPNGPQRVLFEASAEAG 82
Query 89 RAPGAIHGTSVRMPLTLNIPAGIPLEPGIYEWRVEVEGYERATAVEAFIVAGGGHPPA 146
R PGAIHGTSVRMPLTLNIPAGIPLEPGIYEWRVEVEGY RATAVE+F+V G G PPA
Sbjct 83 RPPGAIHGTSVRMPLTLNIPAGIPLEPGIYEWRVEVEGYARATAVESFVVTGPGVPPA 140
>gi|117928602|ref|YP_873153.1| hypothetical protein Acel_1395 [Acidothermus cellulolyticus 11B]
gi|117649065|gb|ABK53167.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B]
Length=143
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/142 (37%), Positives = 76/142 (54%), Gaps = 5/142 (3%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQT-PT---PPFALVLFLDIDWDETNKQHQL 56
M +L L DAA+ D +GKVH LG GW PT P A+V+ + + W T + H L
Sbjct 1 MHATLLLCDAAEVDP-AGKVHMLGAGWTVVGAGPTGALPGQAVVVLVHVPWHRTGEDHLL 59
Query 57 KCQLLTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPG 116
+ L ADG V+ P PQ ++ + A R PGA G ++ +P+ + I G+ L PG
Sbjct 60 RLSLEDADGRAVLAGAPENPQPLVHQQAFRVQRPPGAPEGITIDVPVVVTIGPGLVLPPG 119
Query 117 IYEWRVEVEGYERATAVEAFIV 138
Y WR+E++G R + +F V
Sbjct 120 RYAWRLEIDGETREDWLVSFHV 141
>gi|284045077|ref|YP_003395417.1| hypothetical protein Cwoe_3625 [Conexibacter woesei DSM 14684]
gi|283949298|gb|ADB52042.1| hypothetical protein Cwoe_3625 [Conexibacter woesei DSM 14684]
Length=150
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/127 (35%), Positives = 67/127 (53%), Gaps = 4/127 (3%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
+RV++ L+D AQ GK++ +G GW PFA+ ++ W ++ H + +L
Sbjct 10 LRVNVMLADYAQV--ADGKLNVIGGGWSVTGPEPSPFAIAGLFEVPWHLADQLHTFRFEL 67
Query 61 LTADGDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI-YE 119
+ DG V+ P G Q + FE + E G A G+ R+P LN +PLEPG YE
Sbjct 68 IDMDGTAVMCRTPDGMQEVFFEGSFELGHPEDAKPGSVQRVPFALN-GGMLPLEPGTHYE 126
Query 120 WRVEVEG 126
WR+ V+G
Sbjct 127 WRLSVDG 133
>gi|284044566|ref|YP_003394906.1| hypothetical protein Cwoe_3112 [Conexibacter woesei DSM 14684]
gi|283948787|gb|ADB51531.1| hypothetical protein Cwoe_3112 [Conexibacter woesei DSM 14684]
Length=138
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/129 (35%), Positives = 68/129 (53%), Gaps = 11/129 (8%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTP--PFALVLFLDIDWDETNKQHQLKC 58
M L L D A+A +GK++ +G W Q P AL + + + WDE + H+L
Sbjct 1 MEADLLLCD--HAEAINGKLYIMGAAWNLLQAPEQAITIALAIVVKVAWDEADTSHELIA 58
Query 59 QLLTADGDPVVVPG-PHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI 117
+LL ADG+ +V+ G P P E GR G G+++ MPL N+ +G+ L G
Sbjct 59 ELLDADGERIVMNGEPVAPS-----GRFELGRPTGVKPGSTLNMPLAFNL-SGLVLGVGQ 112
Query 118 YEWRVEVEG 126
YEWR+ ++G
Sbjct 113 YEWRLTIDG 121
>gi|256372375|ref|YP_003110199.1| hypothetical protein Afer_1604 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008959|gb|ACU54526.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
10331]
Length=161
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/122 (29%), Positives = 54/122 (45%), Gaps = 4/122 (3%)
Query 6 FLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLTADG 65
L DAAQ GK++ LG GW P A+ + L++ W E H + L G
Sbjct 1 MLCDAAQV--CDGKLYILGGGWSMTVAGLAPMAIAMRLELAWGEAPNPHHWELFLQDEAG 58
Query 66 DPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNI-PAGIPLEPGIYEWRVEV 124
+ V + P GPQ + + G G G+ + + L + I P +P Y W++ V
Sbjct 59 EQVTIETPEGPQPVEIRGDFQLGTPQGVPLGSDIPLNLAVTIGPLPLPAN-SRYRWQLVV 117
Query 125 EG 126
+G
Sbjct 118 DG 119
>gi|312194791|ref|YP_004014852.1| hypothetical protein FraEuI1c_0908 [Frankia sp. EuI1c]
gi|311226127|gb|ADP78982.1| hypothetical protein FraEuI1c_0908 [Frankia sp. EuI1c]
Length=261
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/71 (33%), Positives = 36/71 (51%), Gaps = 2/71 (2%)
Query 1 MRVSLFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQL 60
+++++ L DAAQ GK++ LG GW P AL + + + WD N L+ +L
Sbjct 47 VKLTMILCDAAQV--AGGKLYILGGGWNLIGPSPAPSALGILIALPWDRANAPCTLRLKL 104
Query 61 LTADGDPVVVP 71
DG P + P
Sbjct 105 HDQDGAPAIQP 115
>gi|254582154|ref|XP_002497062.1| ZYRO0D14542p [Zygosaccharomyces rouxii]
gi|238939954|emb|CAR28129.1| ZYRO0D14542p [Zygosaccharomyces rouxii]
Length=263
Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/94 (31%), Positives = 39/94 (42%), Gaps = 13/94 (13%)
Query 14 DAQSGKVHALGLGWRQCQTPT------PPFALVLFLDIDWDETNKQHQLKC--QLLTADG 65
D+ KV G W P F L++ D ++ T + L+C LL DG
Sbjct 138 DSNDRKVVVEGYIWGNEYEPILSHTGGSKFDLIILSDCVFNHTEHRKLLRCIKDLLANDG 197
Query 66 DPVVVPGPHGPQRI-----LFEAAAEAGRAPGAI 94
+VV PH P+ + FE A E G AP I
Sbjct 198 KALVVFSPHRPRLLDVDLSFFETAKEFGLAPEFI 231
>gi|288920630|ref|ZP_06414934.1| hypothetical protein FrEUN1fDRAFT_4632 [Frankia sp. EUN1f]
gi|288347970|gb|EFC82243.1| hypothetical protein FrEUN1fDRAFT_4632 [Frankia sp. EUN1f]
Length=103
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 31/68 (46%), Gaps = 2/68 (2%)
Query 5 LFLSDAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLTAD 64
+ L DAAQ GK++ LG GW P AL L +++ WD N L+ +L D
Sbjct 1 MILCDAAQVS--EGKLYILGGGWNLVGPSPAPSALGLLIEVPWDRANSPFTLQLELHDQD 58
Query 65 GDPVVVPG 72
PG
Sbjct 59 AHQPSSPG 66
>gi|341819954|emb|CCC56171.1| DNA gyrase subunit A [Weissella thailandensis fsh4-2]
Length=863
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 25/85 (30%), Positives = 42/85 (50%), Gaps = 4/85 (4%)
Query 60 LLTADGDPVVVPGPHGPQRILF--EAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI 117
+L DGD ++ G HG + F EA GR+ + G ++R P + A + +E G
Sbjct 656 VLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLR-PDDYVVGAQVLIENG- 713
Query 118 YEWRVEVEGYERATAVEAFIVAGGG 142
+ + GY + TAV+ + + G G
Sbjct 714 HVLIITENGYGKQTAVDQYPIKGRG 738
>gi|319793583|ref|YP_004155223.1| type VI secretion protein icmf [Variovorax paradoxus EPS]
gi|315596046|gb|ADU37112.1| type VI secretion protein IcmF [Variovorax paradoxus EPS]
Length=1211
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/85 (29%), Positives = 38/85 (45%), Gaps = 18/85 (21%)
Query 45 IDWDETNKQHQLKCQLLTADGDP---VVVPGPHGPQRILFEAAAEAGRAPGAIHGT---- 97
+ W +Q++ Q+ TA+G P +V GP R+ +A+ AGR+P + + T
Sbjct 1121 VKWPGPRNSNQVRLQVTTANGTPAGGIVTEGPWALHRLFDKASISAGRSPESFNATFDLQ 1180
Query 98 -----------SVRMPLTLNIPAGI 111
SV PL LN +G
Sbjct 1181 GKKVVLAVTANSVYNPLRLNQMSGF 1205
>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
Length=858
Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 23/85 (28%), Positives = 42/85 (50%), Gaps = 4/85 (4%)
Query 60 LLTADGDPVVVPGPHGPQRILF--EAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEPGI 117
+L DGD ++ G HG + F EA GR+ + G ++R P + A + ++ G
Sbjct 656 VLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLR-PDDYVVGAQVLIDNG- 713
Query 118 YEWRVEVEGYERATAVEAFIVAGGG 142
+ + +GY + T V+ + + G G
Sbjct 714 HVLIITEKGYGKQTPVDQYPIKGRG 738
>gi|304394764|ref|ZP_07376662.1| putative hemolysin-type calcium-binding region [Ahrensia sp.
R2A130]
gi|303293063|gb|EFL87465.1| putative hemolysin-type calcium-binding region [Ahrensia sp.
R2A130]
Length=1865
Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/111 (27%), Positives = 45/111 (41%), Gaps = 9/111 (8%)
Query 9 DAAQADAQSGKVHALGLGWRQCQTPTPPFALVLFLDIDWDETNKQHQLKCQLLT----AD 64
D A AQS ++ + G R TP ++ F+D D +Q LLT AD
Sbjct 1162 DVANGQAQSETIYYIVSGLRDPGTP-----ILAFVDSAGDPIGLNNQDGTWLLTPAEIAD 1216
Query 65 GDPVVVPGPHGPQRILFEAAAEAGRAPGAIHGTSVRMPLTLNIPAGIPLEP 115
+ + G G + A A + T+ + +T N +G P+EP
Sbjct 1217 LNVITPSGESGTANLTLTTVATENDGDQATNATTFTIDITANGVSGTPIEP 1267
Lambda K H
0.319 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130023393564
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40