BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1780
Length=187
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608918|ref|NP_216296.1| hypothetical protein Rv1780 [Mycoba... 375 2e-102
gi|289574457|ref|ZP_06454684.1| conserved hypothetical protein [... 373 6e-102
gi|41407592|ref|NP_960428.1| hypothetical protein MAP1494 [Mycob... 333 7e-90
gi|254775415|ref|ZP_05216931.1| hypothetical protein MaviaA2_122... 331 3e-89
gi|342861322|ref|ZP_08717970.1| hypothetical protein MCOL_20661 ... 331 4e-89
gi|254820279|ref|ZP_05225280.1| hypothetical protein MintA_10141... 327 4e-88
gi|183982668|ref|YP_001850959.1| hypothetical protein MMAR_2661 ... 318 2e-85
gi|240172010|ref|ZP_04750669.1| hypothetical protein MkanA1_2203... 317 4e-85
gi|15827718|ref|NP_301981.1| hypothetical protein ML1380 [Mycoba... 316 1e-84
gi|118618478|ref|YP_906810.1| hypothetical protein MUL_3096 [Myc... 312 1e-83
gi|296164767|ref|ZP_06847329.1| conserved hypothetical protein [... 309 1e-82
gi|333990528|ref|YP_004523142.1| hypothetical protein JDM601_188... 282 2e-74
gi|118472575|ref|YP_887986.1| hypothetical protein MSMEG_3683 [M... 260 5e-68
gi|145224016|ref|YP_001134694.1| hypothetical protein Mflv_3430 ... 250 8e-65
gi|120404163|ref|YP_953992.1| hypothetical protein Mvan_3184 [My... 249 2e-64
gi|108799852|ref|YP_640049.1| hypothetical protein Mmcs_2886 [My... 230 6e-59
gi|169629470|ref|YP_001703119.1| hypothetical protein MAB_2384 [... 219 1e-55
gi|296138201|ref|YP_003645444.1| hypothetical protein Tpau_0464 ... 208 3e-52
gi|262201510|ref|YP_003272718.1| hypothetical protein Gbro_1550 ... 196 1e-48
gi|326384722|ref|ZP_08206399.1| hypothetical protein SCNU_17360 ... 181 3e-44
gi|335419951|ref|ZP_08550994.1| hypothetical protein SSPSH_04647... 144 4e-33
gi|311744409|ref|ZP_07718210.1| conserved hypothetical protein [... 129 1e-28
gi|333921340|ref|YP_004494921.1| hypothetical protein AS9A_3683 ... 120 1e-25
gi|54026740|ref|YP_120982.1| hypothetical protein nfa47660 [Noca... 81.3 7e-14
gi|162455238|ref|YP_001617605.1| anti-anti sigma factor protein ... 44.7 0.007
gi|54026356|ref|YP_120598.1| hypothetical protein nfa43850 [Noca... 43.1 0.020
gi|325118220|emb|CBZ53771.1| conserved hypothetical protein [Neo... 38.5 0.43
gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine ki... 38.1 0.57
gi|322799535|gb|EFZ20843.1| hypothetical protein SINV_13320 [Sol... 35.0 5.8
>gi|15608918|ref|NP_216296.1| hypothetical protein Rv1780 [Mycobacterium tuberculosis H37Rv]
gi|15841249|ref|NP_336286.1| hypothetical protein MT1830 [Mycobacterium tuberculosis CDC1551]
gi|31792969|ref|NP_855462.1| hypothetical protein Mb1809 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=187
Score = 375 bits (962), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR
Sbjct 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA
Sbjct 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
Query 181 DSTWSGP 187
DSTWSGP
Sbjct 181 DSTWSGP 187
>gi|289574457|ref|ZP_06454684.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289538888|gb|EFD43466.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=187
Score = 373 bits (958), Expect = 6e-102, Method: Compositional matrix adjust.
Identities = 186/187 (99%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR
Sbjct 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQ+FMVAGDIALRATARAAEPLLLIVDVA
Sbjct 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQQFMVAGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
Query 181 DSTWSGP 187
DSTWSGP
Sbjct 181 DSTWSGP 187
>gi|41407592|ref|NP_960428.1| hypothetical protein MAP1494 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465449|ref|YP_882126.1| hypothetical protein MAV_2940 [Mycobacterium avium 104]
gi|41395945|gb|AAS03811.1| hypothetical protein MAP_1494 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166736|gb|ABK67633.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336457640|gb|EGO36644.1| hypothetical protein MAPs_20990 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=186
Score = 333 bits (854), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 165/186 (89%), Positives = 176/186 (95%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M NHDYVTYEEFGRRFFEVAVTP+RVAAAFADIAGSEFAMEPI+QGPG IAKVSANVKI
Sbjct 1 MSNHDYVTYEEFGRRFFEVAVTPERVAAAFADIAGSEFAMEPIAQGPGKIAKVSANVKIH 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EPRVTR+LGD ITFVIHIPLSIDLL+DL LDKQRF+V+GDIALRATARAAEPLLLIVDVA
Sbjct 61 EPRVTRRLGDTITFVIHIPLSIDLLVDLWLDKQRFVVSGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYV+ EID+P SQAAQVI+VA+QL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVADEIDAPHSQAAQVIDVAQQL 180
Query 181 DSTWSG 186
+ W G
Sbjct 181 EQAWPG 186
>gi|254775415|ref|ZP_05216931.1| hypothetical protein MaviaA2_12201 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=186
Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/186 (89%), Positives = 175/186 (95%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M NHDYVTYEEFGRRFFEVAVTP+RVAAAFADIAGSEFAMEPI+QGPG IAKVSANVKI
Sbjct 1 MSNHDYVTYEEFGRRFFEVAVTPERVAAAFADIAGSEFAMEPIAQGPGKIAKVSANVKIH 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EP VTR+LGD ITFVIHIPLSIDLL+DL LDKQRF+V+GDIALRATARAAEPLLLIVDVA
Sbjct 61 EPHVTRRLGDTITFVIHIPLSIDLLVDLWLDKQRFVVSGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYV+ EID+P SQAAQVI+VA+QL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVADEIDAPHSQAAQVIDVAQQL 180
Query 181 DSTWSG 186
+ W G
Sbjct 181 EQAWPG 186
>gi|342861322|ref|ZP_08717970.1| hypothetical protein MCOL_20661 [Mycobacterium colombiense CECT
3035]
gi|342131222|gb|EGT84503.1| hypothetical protein MCOL_20661 [Mycobacterium colombiense CECT
3035]
Length=185
Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 162/184 (89%), Positives = 177/184 (97%), Gaps = 0/184 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M NHDYVTYEEFGRRFFEVAVTP+RVA AFADIAGSEFAMEPI+QGPGGIAKVSANVKI+
Sbjct 1 MTNHDYVTYEEFGRRFFEVAVTPERVANAFADIAGSEFAMEPIAQGPGGIAKVSANVKIQ 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
+PRVTR+LGD ITFVIHIPLSIDLL+DL LDKQRF+V+GDI LRATARAAEPLLLIVDVA
Sbjct 61 DPRVTRRLGDSITFVIHIPLSIDLLVDLWLDKQRFVVSGDIQLRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYV+AEID+P+SQAAQ+I+VA+QL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVAAEIDAPQSQAAQIIDVAQQL 180
Query 181 DSTW 184
+ W
Sbjct 181 EQAW 184
>gi|254820279|ref|ZP_05225280.1| hypothetical protein MintA_10141 [Mycobacterium intracellulare
ATCC 13950]
Length=185
Score = 327 bits (839), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 161/184 (88%), Positives = 175/184 (96%), Gaps = 0/184 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M NHD+VTYEEFGRRFFEVAVTP+RVAAAFADIAGSEFAMEPI+QGPG IAKVSANV I+
Sbjct 1 MSNHDFVTYEEFGRRFFEVAVTPERVAAAFADIAGSEFAMEPIAQGPGKIAKVSANVSIQ 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EPRVTR+LGD ITFVIHIPLSIDLL+DL LDKQRF+V+GDIALRATARAAEPLLLIVDVA
Sbjct 61 EPRVTRRLGDSITFVIHIPLSIDLLVDLWLDKQRFVVSGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSS SIRGEVLRILAGVDGEIRRFIAQYV+AEID+P SQAAQ+I+VA+QL
Sbjct 121 KPRPSDITVNVSSNSIRGEVLRILAGVDGEIRRFIAQYVAAEIDAPASQAAQIIDVAQQL 180
Query 181 DSTW 184
+ W
Sbjct 181 EQAW 184
>gi|183982668|ref|YP_001850959.1| hypothetical protein MMAR_2661 [Mycobacterium marinum M]
gi|183175994|gb|ACC41104.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=187
Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/186 (90%), Positives = 178/186 (96%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQNHDYV+YE+FGRRFFEVAVTPDRVAAAFADIAGSEFAMEPI+QGPGGIAKVSA VKI+
Sbjct 1 MQNHDYVSYEDFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPIAQGPGGIAKVSAKVKIQ 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
+PRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRF V GDIALRATARAAEPLLLIVDV+
Sbjct 61 DPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFSVTGDIALRATARAAEPLLLIVDVS 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYV+ EID+P SQAAQ+I+VA QL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVADEIDAPHSQAAQIIDVATQL 180
Query 181 DSTWSG 186
D W+G
Sbjct 181 DDAWTG 186
>gi|240172010|ref|ZP_04750669.1| hypothetical protein MkanA1_22030 [Mycobacterium kansasii ATCC
12478]
Length=187
Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/186 (90%), Positives = 179/186 (97%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQ+HDY+TYE+FGRRFFEVAVTP+RVAA+FA+IAGSEF MEPI+QGPGGIAKVSA+VKI
Sbjct 1 MQHHDYLTYEDFGRRFFEVAVTPERVAASFAEIAGSEFDMEPIAQGPGGIAKVSAHVKIN 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRF VAGDIALRATARAAEPLLLIVDVA
Sbjct 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFKVAGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYV+ EIDSP+SQAAQVI+VA QL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVAEEIDSPQSQAAQVIDVATQL 180
Query 181 DSTWSG 186
D+ W G
Sbjct 181 DTAWKG 186
>gi|15827718|ref|NP_301981.1| hypothetical protein ML1380 [Mycobacterium leprae TN]
gi|221230195|ref|YP_002503611.1| hypothetical protein MLBr_01380 [Mycobacterium leprae Br4923]
gi|467157|gb|AAA50921.1| unknown [Mycobacterium leprae]
gi|13093269|emb|CAC31761.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933302|emb|CAR71475.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=187
Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/187 (83%), Positives = 173/187 (93%), Gaps = 0/187 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQN+DY+TYEEFGR+FFEVAVTP RVAAAFADIAG+EF+MEPI QGPG IAKVSA VK+R
Sbjct 1 MQNYDYLTYEEFGRKFFEVAVTPARVAAAFADIAGNEFSMEPIGQGPGKIAKVSAKVKLR 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EPRVTR LGD ITFVI IPLSIDLL+DLRLDKQRF VAGDIALRATARAA+PLLL+V+V
Sbjct 61 EPRVTRHLGDNITFVIRIPLSIDLLVDLRLDKQRFTVAGDIALRATARAAKPLLLMVNVE 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KP PSDITVNVSSKSIRGEVLR+LAG+D EIRRF+AQYV+AEIDSP+SQAAQVI+V QL
Sbjct 121 KPLPSDITVNVSSKSIRGEVLRMLAGIDDEIRRFVAQYVTAEIDSPQSQAAQVIDVTHQL 180
Query 181 DSTWSGP 187
++TW+ P
Sbjct 181 EATWADP 187
>gi|118618478|ref|YP_906810.1| hypothetical protein MUL_3096 [Mycobacterium ulcerans Agy99]
gi|118570588|gb|ABL05339.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=187
Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/186 (89%), Positives = 177/186 (96%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQNHDYV+YE+FGRRFFEVAVTPDRVAAAFADIAGSEFAMEPI+QGPGGIAKVSA V+I+
Sbjct 1 MQNHDYVSYEDFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPIAQGPGGIAKVSAKVEIQ 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
+PRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRF V GDIALRATARAAEPLLLIVDV+
Sbjct 61 DPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFSVTGDIALRATARAAEPLLLIVDVS 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYV+ EID+P SQAAQ+I+VA QL
Sbjct 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVADEIDAPHSQAAQIIDVATQL 180
Query 181 DSTWSG 186
D +G
Sbjct 181 DDASTG 186
>gi|296164767|ref|ZP_06847329.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899868|gb|EFG79312.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=185
Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/184 (88%), Positives = 176/184 (96%), Gaps = 0/184 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M+ HDYVTYEEFGRRFFEVAVTP+RVAAAFADIAG+EFAMEPI+QGPGGIAKVSANVKI
Sbjct 1 MEIHDYVTYEEFGRRFFEVAVTPERVAAAFADIAGNEFAMEPIAQGPGGIAKVSANVKIH 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
EP+VTR+LGD ITFVIHIPLSIDLLLDLRLDKQRF+V+GDIALRATARAAEPLLLIVDVA
Sbjct 61 EPKVTRRLGDSITFVIHIPLSIDLLLDLRLDKQRFVVSGDIALRATARAAEPLLLIVDVA 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITVNVSSKS RGEVLRILAGVDGEIRRF+AQYV+ EID+P+SQAAQ+I+VA+QL
Sbjct 121 KPRPSDITVNVSSKSFRGEVLRILAGVDGEIRRFVAQYVAEEIDAPQSQAAQIIDVAQQL 180
Query 181 DSTW 184
W
Sbjct 181 QEAW 184
>gi|333990528|ref|YP_004523142.1| hypothetical protein JDM601_1888 [Mycobacterium sp. JDM601]
gi|333486496|gb|AEF35888.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=187
Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/186 (78%), Positives = 164/186 (89%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
MQN Y+TYEEFGR+FFE+AVT +RVAAAFA IAG EF M P+ QGPGGIA+VSA V+I+
Sbjct 1 MQNLSYLTYEEFGRKFFEIAVTEERVAAAFAAIAGDEFEMPPMRQGPGGIARVSAKVRIQ 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
+PRV R LGDL+TF IHIPL IDLL+DLRLDKQRF VAGDIALRATARAAEPLLLI+DV
Sbjct 61 QPRVARGLGDLLTFAIHIPLVIDLLIDLRLDKQRFTVAGDIALRATARAAEPLLLIIDVP 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDITV VSS SIRGE+LRI AGVDGEIRRFIA YV+ EI+SP+SQ AQVI+VAE+L
Sbjct 121 KPRPSDITVEVSSTSIRGELLRIFAGVDGEIRRFIASYVADEIESPQSQQAQVIDVAERL 180
Query 181 DSTWSG 186
DS W+G
Sbjct 181 DSAWTG 186
>gi|118472575|ref|YP_887986.1| hypothetical protein MSMEG_3683 [Mycobacterium smegmatis str.
MC2 155]
gi|118173862|gb|ABK74758.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=187
Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 124/186 (67%), Positives = 158/186 (85%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M +HDY+TYEEFGRRFFEVAV+ DRV A IAG EF + PI+QGPG IAKV+A VKI+
Sbjct 1 MADHDYITYEEFGRRFFEVAVSEDRVGDAIGAIAGDEFEIGPIAQGPGKIAKVTARVKIQ 60
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
+PRV+R++G+ I F I IPL ID+++DLR+D+ RFMV G+IALRA A AA+PLLLI+DV
Sbjct 61 KPRVSREIGETIVFTIRIPLEIDMVIDLRIDRPRFMVFGEIALRAHALAAKPLLLILDVK 120
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDI ++V+SKS+R EVLRILAGVD EI+RFIA +V+ EIDSP+S+ A+VI+VAE+L
Sbjct 121 KPRPSDIAIHVTSKSLRAEVLRILAGVDAEIKRFIAAHVAGEIDSPESEKAKVIDVAEEL 180
Query 181 DSTWSG 186
DS+W+G
Sbjct 181 DSSWTG 186
>gi|145224016|ref|YP_001134694.1| hypothetical protein Mflv_3430 [Mycobacterium gilvum PYR-GCK]
gi|315444352|ref|YP_004077231.1| hypothetical protein Mspyr1_27670 [Mycobacterium sp. Spyr1]
gi|145216502|gb|ABP45906.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315262655|gb|ADT99396.1| hypothetical protein Mspyr1_27670 [Mycobacterium sp. Spyr1]
Length=208
Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 117/182 (65%), Positives = 153/182 (85%), Gaps = 0/182 (0%)
Query 5 DYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRV 64
DY+TYEEFGRRFFE AV+ RVA+A IAG EF M P++QGPG IAKV+A V+I++PRV
Sbjct 26 DYMTYEEFGRRFFETAVSEQRVASAIGAIAGDEFEMGPMAQGPGRIAKVTARVRIQQPRV 85
Query 65 TRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRP 124
R+LG+LITF I IPL ID+++DLR+DK +FMV G+I+LRATA+AAEPLLLI+DV KPR
Sbjct 86 NRELGELITFAIRIPLEIDMVVDLRIDKPKFMVFGEISLRATAKAAEPLLLILDVEKPRS 145
Query 125 SDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDSTW 184
+DI+++V+SK++R EV+RI+ G+D EI+RFIA +V+ EIDSP SQ A+VINVAE +D W
Sbjct 146 ADISIHVTSKTLRAEVVRIIGGIDAEIKRFIAMHVAGEIDSPGSQKAKVINVAETIDEAW 205
Query 185 SG 186
+G
Sbjct 206 TG 207
>gi|120404163|ref|YP_953992.1| hypothetical protein Mvan_3184 [Mycobacterium vanbaalenii PYR-1]
gi|119956981|gb|ABM13986.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=194
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/182 (64%), Positives = 154/182 (85%), Gaps = 0/182 (0%)
Query 5 DYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRV 64
+++TYE FGRRFFE+AVT +RV AA +IAG F M PI+QGPG +AKV+A V I++PRV
Sbjct 12 EFLTYETFGRRFFEIAVTEERVGAAIGEIAGEAFEMGPIAQGPGRLAKVTAKVNIQQPRV 71
Query 65 TRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRP 124
+R+LG+LITF I IPL ID+++DLR+DK +F+V G+IALRATA+AAEPLLLI+DV KPRP
Sbjct 72 SRQLGELITFAIRIPLEIDMVVDLRIDKPKFIVFGEIALRATAKAAEPLLLILDVQKPRP 131
Query 125 SDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDSTW 184
+DI ++V+SKS+R EV+RI+ GVD EI+RFIA +V+ EIDSP SQ A++I+VAE+LD W
Sbjct 132 ADIAIHVTSKSLRAEVVRIIGGVDAEIKRFIALHVAGEIDSPASQKAKIIDVAERLDEAW 191
Query 185 SG 186
+G
Sbjct 192 TG 193
>gi|108799852|ref|YP_640049.1| hypothetical protein Mmcs_2886 [Mycobacterium sp. MCS]
gi|119868962|ref|YP_938914.1| hypothetical protein Mkms_2930 [Mycobacterium sp. KMS]
gi|126435495|ref|YP_001071186.1| hypothetical protein Mjls_2916 [Mycobacterium sp. JLS]
gi|108770271|gb|ABG08993.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119695051|gb|ABL92124.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126235295|gb|ABN98695.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=190
Score = 230 bits (587), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/186 (63%), Positives = 155/186 (84%), Gaps = 0/186 (0%)
Query 1 MQNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIR 60
M + ++TYE+FGRRFFE AVT +RV AA DIAG F M P+ QGPGGIAKV+A VKI+
Sbjct 4 MSDRQHMTYEDFGRRFFEFAVTEERVGAAIGDIAGDAFEMGPMGQGPGGIAKVTARVKIQ 63
Query 61 EPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVA 120
+PRVTR +G++ITF I IPL ID+++DLR+DK +F+V G+I+LRA+A AA PLLLI+DV
Sbjct 64 QPRVTRHVGEMITFAIRIPLEIDMVVDLRIDKPKFVVYGEISLRASALAAHPLLLILDVK 123
Query 121 KPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
KPRPSDI+++V+SKS+R EV+RI+ G+D EI+RFIA +V+ EI+SP+S+ AQVINVAE +
Sbjct 124 KPRPSDISIHVTSKSLRAEVVRIIGGIDSEIKRFIAAHVAGEIESPESKQAQVINVAEMI 183
Query 181 DSTWSG 186
D +W+G
Sbjct 184 DESWTG 189
>gi|169629470|ref|YP_001703119.1| hypothetical protein MAB_2384 [Mycobacterium abscessus ATCC 19977]
gi|169241437|emb|CAM62465.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=191
Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/184 (64%), Positives = 147/184 (80%), Gaps = 0/184 (0%)
Query 3 NHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREP 62
+H Y+TYEEFGR FFE+AV+ RV AA A IAG F + P++QGPG IAKV+A V+I +P
Sbjct 7 DHQYLTYEEFGRAFFEIAVSEARVRAAVASIAGEPFEVGPMAQGPGKIAKVTAKVQILDP 66
Query 63 RVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKP 122
VTR G+ ITF I +PL+IDLL+DL+LDK RF VAG+IAL+ATARAA PL L++DVA P
Sbjct 67 IVTRNDGETITFDIQVPLAIDLLIDLKLDKSRFKVAGNIALKATARAAAPLQLVIDVAPP 126
Query 123 RPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDS 182
PSDITV+VSS +IRGE+LRILAGVD I RFIA YV+ E+D+PK+ AA+ I+VA +LD
Sbjct 127 GPSDITVDVSSNTIRGELLRILAGVDQLISRFIANYVAHEVDNPKAMAARTIDVAHRLDE 186
Query 183 TWSG 186
W+G
Sbjct 187 AWTG 190
>gi|296138201|ref|YP_003645444.1| hypothetical protein Tpau_0464 [Tsukamurella paurometabola DSM
20162]
gi|296026335|gb|ADG77105.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=194
Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/176 (58%), Positives = 137/176 (78%), Gaps = 0/176 (0%)
Query 5 DYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRV 64
+YV+YEEFGRRFFE+AV +RV +AFADIAG +F + PI GPGG+AKV A V+I EP++
Sbjct 3 EYVSYEEFGRRFFEIAVNEERVGSAFADIAGGDFTVGPIPSGPGGVAKVWAKVQIDEPQL 62
Query 65 TRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRP 124
TR +G+LITF + IPL I LL+DL++D+ R+ VAG I L T RAA PL L ++V P+P
Sbjct 63 TRHVGELITFTVKIPLRIGLLIDLKVDRIRYDVAGLITLPLTVRAAAPLELRIEVDAPKP 122
Query 125 SDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQL 180
D+ V+V S SIRG ++R++A VD EIRRFIAQYV+ EID P+ + A++I+V+E+L
Sbjct 123 KDVWVDVESHSIRGSIVRVVASVDSEIRRFIAQYVAEEIDKPEVKKARIIDVSEEL 178
>gi|262201510|ref|YP_003272718.1| hypothetical protein Gbro_1550 [Gordonia bronchialis DSM 43247]
gi|262084857|gb|ACY20825.1| hypothetical protein Gbro_1550 [Gordonia bronchialis DSM 43247]
Length=184
Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/179 (53%), Positives = 137/179 (77%), Gaps = 0/179 (0%)
Query 7 VTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRVTR 66
+TYEEFGRRFFEVAV+ +RV AAF+ + G F + PIS GPGGIAKV A V+I EP +TR
Sbjct 4 LTYEEFGRRFFEVAVSEERVGAAFSSLVGESFEVGPISSGPGGIAKVLARVRIDEPEITR 63
Query 67 KLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRPSD 126
+G+LITF + IPL+I LL+DL++D+ ++ V G +AL TARAAEPL L ++V P+P D
Sbjct 64 DVGELITFEVQIPLTIRLLVDLKVDRIKYDVDGRVALALTARAAEPLELRIEVQPPKPRD 123
Query 127 ITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDSTWS 185
+TV V+S ++RGE++R++ +D EI+R IA++V+AEID P+ + A++I+V+ +L +
Sbjct 124 VTVGVASHNLRGEIIRVVGQIDDEIKRVIAKHVAAEIDKPEIRKARIIDVSTELGRAFE 182
>gi|326384722|ref|ZP_08206399.1| hypothetical protein SCNU_17360 [Gordonia neofelifaecis NRRL
B-59395]
gi|326196530|gb|EGD53727.1| hypothetical protein SCNU_17360 [Gordonia neofelifaecis NRRL
B-59395]
Length=250
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/181 (49%), Positives = 125/181 (70%), Gaps = 0/181 (0%)
Query 6 YVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRVT 65
Y++YEEFGR FFE AVT +R+ +AF IAG EF + PI GP G+ KV A V++ EP +T
Sbjct 69 YISYEEFGRSFFETAVTEERIGSAFTAIAGEEFEVGPIGSGPAGVVKVHAKVRVAEPEIT 128
Query 66 RKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRPS 125
R +G LITF + +PL I L +DL++D+ R+ V G + L T R A PL L ++V PRP
Sbjct 129 RDVGQLITFTVKLPLHIALSVDLKVDRIRYDVDGLVTLPLTVRCAAPLQLRIEVDPPRPR 188
Query 126 DITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDSTWS 185
D+ V+V+S+++RGE++R LA VD EIRR IA++V EID P+ + A+ I+V +L +
Sbjct 189 DVFVDVNSRNVRGEIIRNLAQVDDEIRRVIARFVETEIDKPEIRKARFIDVDTELGRAFE 248
Query 186 G 186
G
Sbjct 249 G 249
>gi|335419951|ref|ZP_08550994.1| hypothetical protein SSPSH_04647 [Salinisphaera shabanensis E1L3A]
gi|334895597|gb|EGM33765.1| hypothetical protein SSPSH_04647 [Salinisphaera shabanensis E1L3A]
Length=200
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/179 (44%), Positives = 112/179 (63%), Gaps = 1/179 (0%)
Query 5 DYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRV 64
DY +YE FGR FFE AVT +RV A A++ G+E P GPGG+A + A IREP V
Sbjct 14 DY-SYEAFGRDFFEHAVTVERVEQALANLTGNEVNFGPRYVGPGGLASIKAEGSIREPSV 72
Query 65 TRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRP 124
TR+ GDLI F + IP+ ++L + L RF LR TARA PL + +DV P
Sbjct 73 TRREGDLIEFALMIPIDLELSVRLAAHDHRFKTELRAHLRLTARAKAPLHIFIDVPAPSE 132
Query 125 SDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDST 183
+DI V V+++ +R VL ++A V+GE++R++A+YV +ID P+ + + I+V +L+S
Sbjct 133 NDIDVKVNAQGLRASVLDLVADVEGELKRYVARYVGKQIDKPEIRRMRDIDVRRRLESN 191
>gi|311744409|ref|ZP_07718210.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
gi|311312214|gb|EFQ82130.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length=189
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/184 (34%), Positives = 113/184 (62%), Gaps = 0/184 (0%)
Query 3 NHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREP 62
+ ++ +Y EFG+RFF AVT D++ A A + G A P+ GPG +AKV+A +I
Sbjct 2 SDEFCSYAEFGKRFFAAAVTSDKILGAVAALGGRPIAFGPMGVGPGRLAKVTATGEIGTA 61
Query 63 RVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKP 122
G I+F + +P+++D LDL+++ F A ++ L+ ARA L ++V+V P
Sbjct 62 TAQEVPGREISFDVTLPVALDFALDLQVETHHFHGALELPLKVRARATPDLRIVVEVTPP 121
Query 123 RPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDS 182
D+ +++++ R +++ LAGVD E++RF+A+YV+ E++ P+ A++++V +D+
Sbjct 122 SARDVRLDLTADGRRAGMVKKLAGVDAEVKRFVAKYVARELEKPEIARARIVDVNSAIDA 181
Query 183 TWSG 186
W+G
Sbjct 182 AWAG 185
>gi|333921340|ref|YP_004494921.1| hypothetical protein AS9A_3683 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483561|gb|AEF42121.1| hypothetical protein AS9A_3683 [Amycolicicoccus subflavus DQS3-9A1]
Length=200
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/179 (35%), Positives = 109/179 (61%), Gaps = 1/179 (0%)
Query 5 DYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRV 64
+Y TY +FG FF+ A++ R+ +A + I G+ PI GPG IAKV+A+ + +P V
Sbjct 19 EYFTYADFGLAFFDRAISKKRILSAVSGITGAPIEFGPIGAGPGRIAKVTAHGIVNDPTV 78
Query 65 TRKLGDL-ITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPR 123
TR D + F +HIP+ + ++ L RF + L+ TARAA+PL +++V P
Sbjct 79 TRVSEDEPLRFNLHIPVDLKFVVRLTGTVHRFRADVAVDLKLTARAAKPLRAVIEVEPPD 138
Query 124 PSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLDS 182
SD+ V + ++ + VL+I++G++ E++RF+A+Y+ E++ P Q A+ +++ +D+
Sbjct 139 KSDVAVEIRAEGLASSVLQIVSGMESEVKRFVAKYIKEEVNKPHIQKARDVDLGPMIDA 197
>gi|54026740|ref|YP_120982.1| hypothetical protein nfa47660 [Nocardia farcinica IFM 10152]
gi|54018248|dbj|BAD59618.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=376
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/184 (29%), Positives = 94/184 (52%), Gaps = 9/184 (4%)
Query 2 QNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIRE 61
++ D++ Y EFG RFFE VT R+ ++G + P+ GP A V+ I
Sbjct 197 EHFDWIDYGEFGHRFFERVVTRQRIEEVVGRMSGRPIEIGPLRTGPRDRATVTVRGAIGT 256
Query 62 PRVTRKLGDLIT---FVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVD 118
P ++ + +T F + +P+ +D+ +++ R+ +I L TARAA+PL +++D
Sbjct 257 PLLSEH--EAVTPRRFGLLLPVGLDITVEV-FKANRYRADVEIPLELTARAADPLRVVID 313
Query 119 VAKPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAE 178
V P P D+ + + +R L LAG+ ++ IAQ ++ ++I+VA
Sbjct 314 VTPPEPEDLRLRFKAHGVRAATLGALAGIKKQV---IAQVLAVVRQELARGEGRIIDVAA 370
Query 179 QLDS 182
++DS
Sbjct 371 RIDS 374
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/184 (28%), Positives = 96/184 (53%), Gaps = 1/184 (0%)
Query 2 QNHDYVTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIRE 61
Q ++ Y +FG RF AVT DR+ AA + + G ++ P++ PGG+A A K+
Sbjct 9 QEPGWIEYAQFGERFVTHAVTEDRIIAAVSGMVGQGVSIGPVNLAPGGMAGFLAEGKVGT 68
Query 62 PRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAK 121
P V+R +L+ F + +P+++ L + L R +I L AR AEP+L+++DV
Sbjct 69 PAVSRHERNLV-FHVTVPVTLALKILLGGKPLRLEAIVEIDLTLHARTAEPVLIVIDVPP 127
Query 122 PRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQLD 181
+++ + + ++ +L + G ++R +A V+A + P ++ +V ++ +
Sbjct 128 IAAENVSFVLRASAVDSAWEWMLDPIAGLVQREVANRVNAILAEPAARRGRVFDIEAMVA 187
Query 182 STWS 185
T S
Sbjct 188 GTRS 191
>gi|162455238|ref|YP_001617605.1| anti-anti sigma factor protein [Sorangium cellulosum 'So ce 56']
gi|161165820|emb|CAN97125.1| anti-anti sigma factor protein [Sorangium cellulosum 'So ce 56']
Length=635
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/192 (24%), Positives = 93/192 (49%), Gaps = 26/192 (13%)
Query 7 VTYEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGP-------GGIAKVSANVKI 59
+T EE GR ++A+T D + A+ P+ + G ++++ + ++
Sbjct 6 LTLEELGRSIVDLAMTEDVIRRQV-------IALLPVGRRAERELDVLGRPSRLTMDFEV 58
Query 60 REPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDV 119
EP TR + F + IP ++ + +D + + + +ALR T R PL + +DV
Sbjct 59 GEPAATRSMSG--AFDVAIPHAVTVRVDAEGEAKEHRLDAALALRITPRPCAPLGIFLDV 116
Query 120 AKPRPSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEIDSPKSQAAQVINVAEQ 179
A+ P++ S++ + LR ++ E+RR + + V A I +S+A + +++ E
Sbjct 117 AEL-PAESVRFAESRASAKDYLR--GRIEEEVRRELLRLVRARI--AESRADRTLDLEEP 171
Query 180 L-----DSTWSG 186
L D++W+G
Sbjct 172 LLRALGDASWAG 183
>gi|54026356|ref|YP_120598.1| hypothetical protein nfa43850 [Nocardia farcinica IFM 10152]
gi|54017864|dbj|BAD59234.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=230
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/184 (27%), Positives = 86/184 (47%), Gaps = 17/184 (9%)
Query 11 EFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPGGIAKVSANVKIREPRVTRKLGD 70
+F PDR+AA I G + P+ GPGG+ +A + R+T
Sbjct 17 QFADTVLATVTGPDRIAALVDRIVGDRIEVGPLPVGPGGLVSATAVARPWPVRLTAVPER 76
Query 71 LITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEP---LLLIVDVAKPRPSDI 127
F + +P+ L + +R+ + + +G +A+R T A EP L V +A+ SD+
Sbjct 77 DWEFAMFLPML--LHVRVRIPGRTMVFSGAVAVRTTI-ALEPAGRCALAVRIAEIERSDV 133
Query 128 TVNVS-SKSIRGEVLRILAGVDGEIRRFIA---QYVSAEI-DSPKSQAAQVINVAEQLD- 181
+ + ++ G L G G + R +A + V+AE+ DSP + + I+VA +D
Sbjct 134 RARLHPADTVAG-----LLGRLGRVERLVADRVRRVAAEVFDSPAVRELRHIDVAALIDR 188
Query 182 STWS 185
+ W+
Sbjct 189 ALWT 192
>gi|325118220|emb|CBZ53771.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length=3553
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/105 (33%), Positives = 47/105 (45%), Gaps = 19/105 (18%)
Query 53 VSANVKIREPRVTRKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATAR-AAE 111
V+A + +RE ++L DL TF H P S+ LL DLR A D+ LR + A
Sbjct 1443 VTALLLLRE----KRLADLATFTHHFPASLPLLADLR--------AADLLLRCHSYVGAG 1490
Query 112 PLLLIVDVAKPRPSDITVNVSSKSIRGEVLRILAG---VDGEIRR 153
P L + PR S + +G R G ++GE RR
Sbjct 1491 PALALASFLVPR---RRATTSGRRRQGRSERTWGGKTWIEGEKRR 1532
>gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length=1769
Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/135 (26%), Positives = 63/135 (47%), Gaps = 4/135 (2%)
Query 9 YEEFGRRFFEVAVTPDRVAAAFADIAGSEFAMEPISQGPG-GIAKVSANVKIREPRV--T 65
Y F R + ++P+ + F + A+ QG G G+A V++ RV T
Sbjct 1533 YLRFSVRDTGIGISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLT 1592
Query 66 RKLGDLITFVIHIPLSIDLLLDLRLDKQRFMVAGDIALRATARAAEPLLLIVDVAKPRPS 125
++G F I +P +++ R+D + + D+ +T AA PLLL+ + + S
Sbjct 1593 SEVGVGSCFSIDLPYQASVMIPQRMDSEADLNPNDVETPSTPNAA-PLLLLAEDNEANIS 1651
Query 126 DITVNVSSKSIRGEV 140
I+ +++K R E+
Sbjct 1652 TISSYLTAKGYRIEL 1666
>gi|322799535|gb|EFZ20843.1| hypothetical protein SINV_13320 [Solenopsis invicta]
Length=1336
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/63 (31%), Positives = 35/63 (56%), Gaps = 4/63 (6%)
Query 106 TARAAEPLLLIVDVAKPR--PSDITVNVSSKSIRGEVLRILAGVDGEIRRFIAQYVSAEI 163
+A + E +L++ P D+ V + +KS G L IL G++G ++ +YV++E+
Sbjct 1084 SANSNESAMLLIQWPSNEVLPKDVLVRLKTKSSNGPTLFILHGIEGIVKSL--EYVASEL 1141
Query 164 DSP 166
D P
Sbjct 1142 DRP 1144
Lambda K H
0.321 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 180588168880
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40