BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1788

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...   182    1e-44
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...   180    5e-44
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...   147    4e-34
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...   146    9e-34
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...   145    3e-33
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...   144    5e-33
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...   144    6e-33
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...   143    7e-33
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...   140    5e-32
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...   139    2e-31
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...   136    1e-30
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...   133    1e-29
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...   132    2e-29
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...   131    4e-29
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...   129    1e-28
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...   129    1e-28
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...   123    1e-26
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...   123    1e-26
gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...   122    1e-26
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...   122    1e-26
gi|254550795|ref|ZP_05141242.1|  hypothetical protein Mtube_10099...   122    3e-26
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...   119    2e-25
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...   117    4e-25
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...   116    1e-24
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...   115    2e-24
gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...   114    5e-24
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...   113    9e-24
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...   113    9e-24
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...   113    1e-23
gi|240172899|ref|ZP_04751558.1|  PE family protein [Mycobacterium...   113    1e-23
gi|240172021|ref|ZP_04750680.1|  PE family protein, PE19_1 [Mycob...   112    1e-23
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...   112    2e-23
gi|118465345|ref|YP_882101.1|  PE family protein [Mycobacterium a...   112    2e-23
gi|254822878|ref|ZP_05227879.1|  PE family protein [Mycobacterium...   111    3e-23
gi|212596283|gb|ACJ35566.1|  PE5 [Mycobacterium intracellulare AT...   111    3e-23
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...   111    3e-23
gi|254775390|ref|ZP_05216906.1|  hypothetical protein MaviaA2_120...   110    6e-23
gi|118616216|ref|YP_904548.1|  PE-PGRS family protein family prot...   110    7e-23
gi|41408674|ref|NP_961510.1|  hypothetical protein MAP2576c [Myco...   110    9e-23
gi|254774223|ref|ZP_05215739.1|  PE family protein [Mycobacterium...   110    9e-23
gi|296165819|ref|ZP_06848318.1|  PE family protein [Mycobacterium...   110    9e-23
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...   110    1e-22
gi|41407612|ref|NP_960448.1|  hypothetical protein MAP1514 [Mycob...   107    5e-22
gi|183985086|ref|YP_001853377.1|  PE family protein, PE32 [Mycoba...   107    5e-22
gi|296165770|ref|ZP_06848283.1|  PE family protein [Mycobacterium...   107    5e-22
gi|118619370|ref|YP_907702.1|  PE family protein [Mycobacterium u...   107    6e-22
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...   106    1e-21
gi|342862086|ref|ZP_08718729.1|  PE family protein [Mycobacterium...   104    3e-21
gi|333989638|ref|YP_004522252.1|  PE-PGRS family protein [Mycobac...   104    3e-21
gi|240171995|ref|ZP_04750654.1|  PE family protein [Mycobacterium...   102    2e-20


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score =  182 bits (463),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score =  180 bits (457),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 98/99 (99%), Positives = 98/99 (99%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M FVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 88/99 (89%), Positives = 91/99 (92%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAH Q
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           +YQAVSAQAAAIHEMFVNTL  SSGSYA TEAANAAA G
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTEAANAAATG  99


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score =  146 bits (369),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 76/87 (88%), Positives = 83/87 (96%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MS+VTTQPEALAAAA +LQGIGS L++QNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQA+AIHEMFVNTL +SSGSY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  145 bits (365),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 75/87 (87%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MS+VTTQPEALAAAA +LQGIGS L++QNAAAA PTTGVVPAAADEVSALTAAQF AHAQ
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQA+AIHEMFVNTL +SSGSY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  144 bits (363),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 79/87 (91%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  144 bits (362),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 92/99 (93%), Positives = 94/99 (95%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEAL+AAAGSLQ IGSALNAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           +YQAVSAQAAAIHEMFVNTL MSSGSYA TEAANAAA G
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTEAANAAATG  99


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  143 bits (361),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 79/87 (91%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHE FVNTL MSSGSY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score =  140 bits (354),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 78/87 (90%), Positives = 81/87 (94%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHE FVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 77/87 (89%), Positives = 80/87 (92%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQA AIHE FVNTL  SSGSY
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 79/87 (91%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IGSALNAQNAAA+ PTTGVVPAAADEVSALTAAQFA HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ+V+AQAAAIHEMFV TL  S+ SY
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score =  133 bits (334),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 75/87 (87%), Positives = 79/87 (91%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAG+LQ IG  L+AQNAAAA PTTGVVPAAADEVSALTAAQFAA+AQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHE FVNTL  SS SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score =  132 bits (331),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 77/87 (89%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA +LQGIG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 78/99 (79%), Positives = 86/99 (87%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M  VT  P+ L AAAG+LQGIGSA++A+NA AA PTTGVVPAAADEVSALTA QFAAHAQ
Sbjct  1   MFSVTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           +YQAVSAQAAAIHEMF NTL +S+ SYA TEAANAAAAG
Sbjct  61  MYQAVSAQAAAIHEMFANTLGVSADSYAVTEAANAAAAG  99


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  129 bits (324),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 75/87 (87%), Positives = 80/87 (92%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA +LQGIG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFA HAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAA IHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  129 bits (324),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 78/87 (90%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA SLQGIG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 63/91 (70%), Positives = 73/91 (81%), Gaps = 0/91 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT PEA+AA A +LQ IGSA+ AQN AAA PTTG+ PA ADEVS L A QFAA+ Q
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATE  91
           +YQ +SAQAAAI EMFVNTL+ S+ SY +TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 69/98 (71%), Positives = 78/98 (80%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+FVT+ PEAL AAA +L  +G+ ++A NAAA  P TGVVPAAADEVSALTAA FAAH  
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA  98
           +YQ +SAQA AIHEMFV TLQ S GSYA TEAANA AA
Sbjct  61  MYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIAA  98


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 Length=105

 Score =  122 bits (307),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA +LQGIG+ +NAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  7   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  67  MYQTVSAQAAAIHEMFVNTLVASSGSY  93


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score =  122 bits (307),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA +LQGIG+ +NAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87


>gi|254550795|ref|ZP_05141242.1| hypothetical protein Mtube_10099 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=65

 Score =  122 bits (305),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  IYQAV  65
           IYQAV
Sbjct  61  IYQAV  65


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 72/98 (74%), Positives = 81/98 (83%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVT QPE LAA A  L+GIGSAL  QNAAA+  TTGV+PA ADEVSALTA QFAAHAQ
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA  98
           +YQAVSAQAAA +++FV TL +S+GSYAATEA N  AA
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIAA  98


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score =  117 bits (294),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 65/87 (75%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV TQPEALA+AA  L+GIGS + AQN AAA PTT + PAAADEVSALTAA F+AHAQ
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
            YQ VSAQAAAIHE FV TL +SS SY
Sbjct  61  AYQEVSAQAAAIHEAFVRTLALSSESY  87


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  116 bits (291),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 65/90 (73%), Positives = 72/90 (80%), Gaps = 0/90 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+FVT QPE+L  AA  L  IGSAL AQN+A A P TGV PAAADEVS LTAAQFA H Q
Sbjct  1   MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMTGVAPAAADEVSLLTAAQFARHGQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAAT  90
            +QA+SAQAAAIHE FV TLQ+S+GSYAAT
Sbjct  61  TFQALSAQAAAIHENFVTTLQVSAGSYAAT  90


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score =  115 bits (288),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 61/99 (62%), Positives = 80/99 (81%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTT-GVVPAAADEVSALTAAQFAAHA  59
           MSF+TTQPE LAAAAG L+ IG+ ++A+N AA  PTT GV+PAAADEVSAL A+ F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  60  QIYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA  98
            +YQ VSA+AA +++MFV TL +S+G+YAA E AN++AA
Sbjct  61  TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSSAA  99


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 65/99 (66%), Positives = 70/99 (71%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF T QPE LAAAAG L+ +G+ L A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
            YQ  SA+AA IHE FV TL  S+ SYA TEAANA   G
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  113 bits (283),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 67/87 (78%), Positives = 74/87 (86%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVT++PEAL +AAG+LQ IGSA+NA NAAA  P TGVVPAAADEVSALTAA FAAH  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQAVSAQAAAIHE+FV TL  S GSY
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSY  87


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score =  113 bits (283),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 64/99 (65%), Positives = 69/99 (70%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF T QPE LAAAAG L+ +G+ L   NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSF-TAQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
            YQ  SA+AA IHE FV TL  S+ SYA TEAANA   G
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 55/87 (64%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF+TTQP+ LAAAAG LQ IG+ + A+N AAA PTTGV+PAAADEVS L A+ F A+  
Sbjct  1   MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ +SA+AAA++EM VNTL +S+G+Y
Sbjct  61  LYQQISAEAAAMYEMLVNTLGVSAGTY  87


>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 61/87 (71%), Positives = 72/87 (83%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+FV TQPE LAAAAG+LQ IGSA++AQN AA+  TT V PAAAD+VSALTAA+F+AHAQ
Sbjct  1   MTFVVTQPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ VSAQAAAIH+ FV  L  S+ SY
Sbjct  61  VYQVVSAQAAAIHQAFVAALTASANSY  87


>gi|240172021|ref|ZP_04750680.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 80/99 (81%), Positives = 90/99 (91%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQP ALA AA +L+GIGSAL++QNAAAA PTTGVVPAA DEVSAL AAQFAAHA+
Sbjct  1   MSFVTTQPAALAVAANTLEGIGSALSSQNAAAAAPTTGVVPAAVDEVSALAAAQFAAHAE  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           +YQ VS+QA+AIHEMF +TL +SSGSYAATEAANAAAAG
Sbjct  61  MYQVVSSQASAIHEMFASTLTISSGSYAATEAANAAAAG  99


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/99 (62%), Positives = 72/99 (73%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV T PE L AA G L+ IGSA++  N  AA P  GV+PAAADEVS +TAA F A+ Q
Sbjct  1   MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           +YQA+SA+A  IHE FV  L +S+ SYAATEAANA  AG
Sbjct  61  LYQAISAEAHLIHEQFVKALGLSANSYAATEAANATHAG  99


>gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium avium 104]
 gi|118166632|gb|ABK67529.1| PE family protein [Mycobacterium avium 104]
 gi|212595805|gb|ACJ35524.1| PE6 [Mycobacterium avium subsp. avium]
Length=99

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/91 (68%), Positives = 70/91 (77%), Gaps = 0/91 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M +VT QPEA+ AAA  LQ IG+AL AQ  A + P TGVVPAAAD VS L AA+FA H Q
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATE  91
            +QAVSA+AAA+HEMFV TLQ S+GSYA TE
Sbjct  61  AFQAVSAEAAAVHEMFVTTLQTSAGSYAGTE  91


>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 62/94 (66%), Positives = 73/94 (78%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL AAA  L+ +GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN  94
            YQ VSAQA AIH+  VN L  S+GSY  TE AN
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETAN  94


>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 62/94 (66%), Positives = 73/94 (78%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL AAA  L+ +GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN  94
            YQ VSAQA AIH+  VN L  S+GSY  TE AN
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETAN  94


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 69/87 (80%), Positives = 76/87 (88%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV TQPEAL AAAG+L  IGSAL+AQNAAAATPTTGVVPAAADEVSALTAAQFAAHA 
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ++SAQA AIH+ FV TL  S+ SY
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_12076 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=98

 Score =  110 bits (276),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 60/89 (68%), Positives = 69/89 (78%), Gaps = 0/89 (0%)

Query  3   FVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQIY  62
           +VT QPEA+ AAA  LQ IG+AL AQ  A + P TGVVPAAAD VS L AA+FA H Q +
Sbjct  2   YVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAF  61

Query  63  QAVSAQAAAIHEMFVNTLQMSSGSYAATE  91
           QAVSA+AAA+HEMFV TLQ S+GSYA TE
Sbjct  62  QAVSAEAAAVHEMFVTTLQTSAGSYAGTE  90


>gi|118616216|ref|YP_904548.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
 gi|118568326|gb|ABL03077.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score =  110 bits (275),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 65/98 (67%), Positives = 74/98 (76%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+ VT+ PEAL AAA +L  +G+  +A NAAA  P TGVVPAAADEVSALTAA FAAH  
Sbjct  1   MASVTSAPEALTAAALNLHSVGAGTSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA  98
           + Q +SAQA AI+EMFV TLQ   GSYA TEAANA AA
Sbjct  61  MCQTLSAQAQAIYEMFVTTLQACGGSYAETEAANAVAA  98


>gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463687|ref|YP_880590.1| PE family protein [Mycobacterium avium 104]
 gi|41397032|gb|AAS04893.1| PE_6 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164974|gb|ABK65871.1| PE family protein [Mycobacterium avium 104]
 gi|212595794|gb|ACJ35523.1| PE5 [Mycobacterium avium subsp. avium]
Length=278

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 61/94 (65%), Positives = 73/94 (78%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL A A  L+G+GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN  94
            YQ VSAQA AIH+  V  L  ++ SY ATEAAN
Sbjct  61  WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAAN  94


>gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=173

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 61/94 (65%), Positives = 73/94 (78%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL A A  L+G+GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN  94
            YQ VSAQA AIH+  V  L  ++ SY ATEAAN
Sbjct  61  WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAAN  94


>gi|296165819|ref|ZP_06848318.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898827|gb|EFG78334.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 74/99 (75%), Positives = 81/99 (82%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M  VTTQP A+ AAA   QGIGSA++A N AAA P TGVVPAAADEVS LTA QFAAHAQ
Sbjct  1   MMLVTTQPAAMTAAADDAQGIGSAMSAGNVAAAAPRTGVVPAAADEVSGLTALQFAAHAQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG  99
           IYQAVSAQAAA+HEMF +TL +S+ SYA TEAANA AAG
Sbjct  61  IYQAVSAQAAAVHEMFASTLGVSADSYALTEAANAVAAG  99


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 66/99 (67%), Positives = 83/99 (84%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTT-GVVPAAADEVSALTAAQFAAHA  59
           MSF+TTQPE LAAAAG L+ IGSA+ AQNAAAA PTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60  QIYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA  98
            +YQ VSA+AAA++++FV TL +S+G+YAATEAAN++AA
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99


>gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395965|gb|AAS03831.1| PE_5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457563|gb|EGO36568.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 62/90 (69%), Positives = 70/90 (78%), Gaps = 0/90 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M +VT QPEA+ AAA  LQ IG+AL AQ  A + P TGVVPAAAD VS L AA+FA H Q
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAAT  90
            +QAVSA+AAAIHEMFV TLQ S+GSYAAT
Sbjct  61  AFQAVSAEAAAIHEMFVTTLQTSAGSYAAT  90


>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
 gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 61/97 (63%), Positives = 70/97 (73%), Gaps = 0/97 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MS VT QPE +A  A  LQ I SA  A +  A  PTTGVVP AAD VS LTAAQFAAHA+
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAA  97
           +YQA+SAQAAA+ +  V  L +S+GSYAATEAAN  A
Sbjct  61  VYQAISAQAAAVQDQLVTVLGISAGSYAATEAANTVA  97


>gi|296165770|ref|ZP_06848283.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898876|gb|EFG78369.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=105

 Score =  107 bits (267),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 69/87 (80%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           +SFVTTQPEAL+AAAG L  IGSAL AQNAAA+ PTTGVVPAA DEVS L AAQFA HAQ
Sbjct  7   VSFVTTQPEALSAAAGKLAVIGSALAAQNAAASAPTTGVVPAATDEVSVLIAAQFATHAQ  66

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ V AQA  IHE FV  L + +GSY
Sbjct  67  MYQTVCAQATMIHESFVKMLHLGAGSY  93


>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 61/97 (63%), Positives = 70/97 (73%), Gaps = 0/97 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MS VT QPE +A  A  LQ I SA  A +  A  PTTGVVP AAD VS LTAAQFAAHA+
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAA  97
           +YQA+SAQAAA+ +  V  L +S+GSYAATEAAN  A
Sbjct  61  VYQAISAQAAAVQDELVTVLGISAGSYAATEAANTVA  97


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 61/90 (68%), Positives = 72/90 (80%), Gaps = 0/90 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF+T QP+ LAAAA +L  +G+AL+A N+AAA PTTGV+P AADEVSAL A QFAAHA 
Sbjct  1   MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAAT  90
            YQAVSA+AA IH+  V TL  S+GSYAAT
Sbjct  61  TYQAVSARAAGIHDQLVATLAASAGSYAAT  90


>gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130390|gb|EGT83705.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=268

 Score =  104 bits (260),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 59/94 (63%), Positives = 71/94 (76%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL A A  LQ +GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALLATASMLQALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN  94
            YQ VSAQA A+H+  V  L  ++GSY  TE AN
Sbjct  61  WYQQVSAQAKAVHQTMVANLNSNAGSYGETETAN  94


>gi|333989638|ref|YP_004522252.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485606|gb|AEF34998.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  104 bits (260),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 64/87 (74%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV+ QPE L AAAG L GIG+A+ AQNAAAA  TTGVVPAAAD VSALTAAQF AHA 
Sbjct  1   MSFVSAQPEELTAAAGELTGIGAAMAAQNAAAAAATTGVVPAAADPVSALTAAQFVAHAD  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87
           +YQ+VSAQA A H+MFV TL  S+GSY
Sbjct  61  LYQSVSAQANATHQMFVTTLMTSAGSY  87


>gi|240171995|ref|ZP_04750654.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=170

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 65/98 (67%), Positives = 75/98 (77%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+P AL AAA +L  +GS++  QNAAAA PTTG+VP AAD+ SAL AAQFAA+  
Sbjct  1   MSFVTTRPAALTAAASALHIVGSSMATQNAAAAAPTTGLVPTAADQASALQAAQFAAYGT  60

Query  61  IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA  98
            YQ VSAQA  IH+M VNTL  S+GSYA TEAAN  AA
Sbjct  61  WYQQVSAQAMVIHQMLVNTLGSSAGSYAKTEAANRTAA  98



Lambda     K      H
   0.309    0.113    0.291 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40