BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1788
Length=99
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tu... 182 1e-44
gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium... 180 5e-44
gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 ... 147 4e-34
gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Myco... 146 9e-34
gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium u... 145 3e-33
gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 ... 144 5e-33
gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium... 144 6e-33
gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium... 143 7e-33
gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_121... 140 5e-32
gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211... 139 2e-31
gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobac... 136 1e-30
gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycob... 133 1e-29
gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycoba... 132 2e-29
gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium... 131 4e-29
gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium u... 129 1e-28
gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycob... 129 1e-28
gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobact... 123 1e-26
gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobac... 123 1e-26
gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tu... 122 1e-26
gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bo... 122 1e-26
gi|254550795|ref|ZP_05141242.1| hypothetical protein Mtube_10099... 122 3e-26
gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium... 119 2e-25
gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobac... 117 4e-25
gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 ... 116 1e-24
gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacteriu... 115 2e-24
gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tu... 114 5e-24
gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobact... 113 9e-24
gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bo... 113 9e-24
gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium... 113 1e-23
gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium... 113 1e-23
gi|240172021|ref|ZP_04750680.1| PE family protein, PE19_1 [Mycob... 112 1e-23
gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycob... 112 2e-23
gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium a... 112 2e-23
gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium... 111 3e-23
gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare AT... 111 3e-23
gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobac... 111 3e-23
gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_120... 110 6e-23
gi|118616216|ref|YP_904548.1| PE-PGRS family protein family prot... 110 7e-23
gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Myco... 110 9e-23
gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium... 110 9e-23
gi|296165819|ref|ZP_06848318.1| PE family protein [Mycobacterium... 110 9e-23
gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium... 110 1e-22
gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycob... 107 5e-22
gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycoba... 107 5e-22
gi|296165770|ref|ZP_06848283.1| PE family protein [Mycobacterium... 107 5e-22
gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium u... 107 6e-22
gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_0697... 106 1e-21
gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium... 104 3e-21
gi|333989638|ref|YP_004522252.1| PE-PGRS family protein [Mycobac... 104 3e-21
gi|240171995|ref|ZP_04750654.1| PE family protein [Mycobacterium... 102 2e-20
>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
60 more sequence titles
Length=99
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG
Sbjct 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/99 (99%), Positives = 98/99 (99%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M FVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG
Sbjct 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT
3035]
gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT
3035]
Length=99
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/99 (89%), Positives = 91/99 (92%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAH Q
Sbjct 1 MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
+YQAVSAQAAAIHEMFVNTL SSGSYA TEAANAAA G
Sbjct 61 MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTEAANAAATG 99
>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/87 (88%), Positives = 83/87 (96%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MS+VTTQPEALAAAA +LQGIGS L++QNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQA+AIHEMFVNTL +SSGSY
Sbjct 61 MYQAVSAQASAIHEMFVNTLGISSGSY 87
>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/87 (87%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MS+VTTQPEALAAAA +LQGIGS L++QNAAAA PTTGVVPAAADEVSALTAAQF AHAQ
Sbjct 1 MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQA+AIHEMFVNTL +SSGSY
Sbjct 61 MYQAVSAQASAIHEMFVNTLGISSGSY 87
>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT
3035]
gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT
3035]
Length=99
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/87 (91%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHEMFVNTL SSGSY
Sbjct 61 MYQAVSAQAAAIHEMFVNTLSTSSGSY 87
>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/99 (93%), Positives = 94/99 (95%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEAL+AAAGSLQ IGSALNAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
+YQAVSAQAAAIHEMFVNTL MSSGSYA TEAANAAA G
Sbjct 61 MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTEAANAAATG 99
>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/87 (91%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHE FVNTL MSSGSY
Sbjct 61 MYQAVSAQAAAIHEAFVNTLSMSSGSY 87
>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=99
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/87 (90%), Positives = 81/87 (94%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHE FVNTL SSGSY
Sbjct 61 MYQAVSAQAAAIHEAFVNTLSTSSGSY 87
>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare
ATCC 13950]
gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/87 (89%), Positives = 80/87 (92%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IGS L+AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQA AIHE FVNTL SSGSY
Sbjct 61 MYQAVSAQAQAIHEAFVNTLSTSSGSY 87
>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/87 (84%), Positives = 79/87 (91%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IGSALNAQNAAA+ PTTGVVPAAADEVSALTAAQFA HA
Sbjct 1 MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ+V+AQAAAIHEMFV TL S+ SY
Sbjct 61 LYQSVAAQAAAIHEMFVATLNGSAESY 87
>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/87 (87%), Positives = 79/87 (91%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAG+LQ IG L+AQNAAAA PTTGVVPAAADEVSALTAAQFAA+AQ
Sbjct 1 MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHE FVNTL SS SY
Sbjct 61 MYQAVSAQAAAIHEAFVNTLSTSSVSY 87
>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/87 (89%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAA +LQGIG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHEMFVNTL SSGSY
Sbjct 61 MYQAVSAQAAAIHEMFVNTLATSSGSY 87
>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/99 (79%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M VT P+ L AAAG+LQGIGSA++A+NA AA PTTGVVPAAADEVSALTA QFAAHAQ
Sbjct 1 MFSVTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
+YQAVSAQAAAIHEMF NTL +S+ SYA TEAANAAAAG
Sbjct 61 MYQAVSAQAAAIHEMFANTLGVSADSYAVTEAANAAAAG 99
>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/87 (87%), Positives = 80/87 (92%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAA +LQGIG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFA HAQ
Sbjct 1 MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAA IHEMFVNTL SSGSY
Sbjct 61 MYQAVSAQAAVIHEMFVNTLATSSGSY 87
>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/87 (90%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAA SLQGIG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHEMFVNTL SSGSY
Sbjct 61 MYQAVSAQAAAIHEMFVNTLATSSGSY 87
>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/91 (70%), Positives = 73/91 (81%), Gaps = 0/91 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT PEA+AA A +LQ IGSA+ AQN AAA PTTG+ PA ADEVS L A QFAA+ Q
Sbjct 1 MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATE 91
+YQ +SAQAAAI EMFVNTL+ S+ SY +TE
Sbjct 61 LYQQISAQAAAIQEMFVNTLRTSADSYGSTE 91
>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/98 (71%), Positives = 78/98 (80%), Gaps = 0/98 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M+FVT+ PEAL AAA +L +G+ ++A NAAA P TGVVPAAADEVSALTAA FAAH
Sbjct 1 MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA 98
+YQ +SAQA AIHEMFV TLQ S GSYA TEAANA AA
Sbjct 61 MYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIAA 98
>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
17 more sequence titles
Length=105
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAA +LQGIG+ +NAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 7 MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 66
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ VSAQAAAIHEMFVNTL SSGSY
Sbjct 67 MYQTVSAQAAAIHEMFVNTLVASSGSY 93
>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
59 more sequence titles
Length=99
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAA +LQGIG+ +NAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ VSAQAAAIHEMFVNTL SSGSY
Sbjct 61 MYQTVSAQAAAIHEMFVNTLVASSGSY 87
>gi|254550795|ref|ZP_05141242.1| hypothetical protein Mtube_10099 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=65
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
Query 61 IYQAV 65
IYQAV
Sbjct 61 IYQAV 65
>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/98 (74%), Positives = 81/98 (83%), Gaps = 0/98 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVT QPE LAA A L+GIGSAL QNAAA+ TTGV+PA ADEVSALTA QFAAHAQ
Sbjct 1 MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA 98
+YQAVSAQAAA +++FV TL +S+GSYAATEA N AA
Sbjct 61 MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIAA 98
>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/87 (75%), Positives = 71/87 (82%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFV TQPEALA+AA L+GIGS + AQN AAA PTT + PAAADEVSALTAA F+AHAQ
Sbjct 1 MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
YQ VSAQAAAIHE FV TL +SS SY
Sbjct 61 AYQEVSAQAAAIHEAFVRTLALSSESY 87
>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT
3035]
gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT
3035]
Length=99
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/90 (73%), Positives = 72/90 (80%), Gaps = 0/90 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M+FVT QPE+L AA L IGSAL AQN+A A P TGV PAAADEVS LTAAQFA H Q
Sbjct 1 MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMTGVAPAAADEVSLLTAAQFARHGQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAAT 90
+QA+SAQAAAIHE FV TLQ+S+GSYAAT
Sbjct 61 TFQALSAQAAAIHENFVTTLQVSAGSYAAT 90
>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/99 (62%), Positives = 80/99 (81%), Gaps = 1/99 (1%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTT-GVVPAAADEVSALTAAQFAAHA 59
MSF+TTQPE LAAAAG L+ IG+ ++A+N AA PTT GV+PAAADEVSAL A+ F A+
Sbjct 1 MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG 60
Query 60 QIYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA 98
+YQ VSA+AA +++MFV TL +S+G+YAA E AN++AA
Sbjct 61 TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSSAA 99
>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
75 more sequence titles
Length=98
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 70/99 (71%), Gaps = 1/99 (1%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSF T QPE LAAAAG L+ +G+ L A NAAAA PTTGVVP AADEVS L A QF HA
Sbjct 1 MSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA 59
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
YQ SA+AA IHE FV TL S+ SYA TEAANA G
Sbjct 60 TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG 98
>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/87 (78%), Positives = 74/87 (86%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVT++PEAL +AAG+LQ IGSA+NA NAAA P TGVVPAAADEVSALTAA FAAH
Sbjct 1 MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQAVSAQAAAIHE+FV TL S GSY
Sbjct 61 LYQAVSAQAAAIHELFVTTLGASGGSY 87
>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/99 (65%), Positives = 69/99 (70%), Gaps = 1/99 (1%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSF T QPE LAAAAG L+ +G+ L NAAAA PTTGVVP AADEVS L A QF HA
Sbjct 1 MSF-TAQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA 59
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
YQ SA+AA IHE FV TL S+ SYA TEAANA G
Sbjct 60 TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG 98
>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/87 (64%), Positives = 71/87 (82%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSF+TTQP+ LAAAAG LQ IG+ + A+N AAA PTTGV+PAAADEVS L A+ F A+
Sbjct 1 MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ +SA+AAA++EM VNTL +S+G+Y
Sbjct 61 LYQQISAEAAAMYEMLVNTLGVSAGTY 87
>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/87 (71%), Positives = 72/87 (83%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M+FV TQPE LAAAAG+LQ IGSA++AQN AA+ TT V PAAAD+VSALTAA+F+AHAQ
Sbjct 1 MTFVVTQPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ VSAQAAAIH+ FV L S+ SY
Sbjct 61 VYQVVSAQAAAIHQAFVAALTASANSY 87
>gi|240172021|ref|ZP_04750680.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/99 (81%), Positives = 90/99 (91%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTTQP ALA AA +L+GIGSAL++QNAAAA PTTGVVPAA DEVSAL AAQFAAHA+
Sbjct 1 MSFVTTQPAALAVAANTLEGIGSALSSQNAAAAAPTTGVVPAAVDEVSALAAAQFAAHAE 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
+YQ VS+QA+AIHEMF +TL +SSGSYAATEAANAAAAG
Sbjct 61 MYQVVSSQASAIHEMFASTLTISSGSYAATEAANAAAAG 99
>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/99 (62%), Positives = 72/99 (73%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFV T PE L AA G L+ IGSA++ N AA P GV+PAAADEVS +TAA F A+ Q
Sbjct 1 MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
+YQA+SA+A IHE FV L +S+ SYAATEAANA AG
Sbjct 61 LYQAISAEAHLIHEQFVKALGLSANSYAATEAANATHAG 99
>gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium avium 104]
gi|118166632|gb|ABK67529.1| PE family protein [Mycobacterium avium 104]
gi|212595805|gb|ACJ35524.1| PE6 [Mycobacterium avium subsp. avium]
Length=99
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/91 (68%), Positives = 70/91 (77%), Gaps = 0/91 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M +VT QPEA+ AAA LQ IG+AL AQ A + P TGVVPAAAD VS L AA+FA H Q
Sbjct 1 MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATE 91
+QAVSA+AAA+HEMFV TLQ S+GSYA TE
Sbjct 61 AFQAVSAEAAAVHEMFVTTLQTSAGSYAGTE 91
>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/94 (66%), Positives = 73/94 (78%), Gaps = 0/94 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT+PEAL AAA L+ +GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+
Sbjct 1 MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN 94
YQ VSAQA AIH+ VN L S+GSY TE AN
Sbjct 61 WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETAN 94
>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/94 (66%), Positives = 73/94 (78%), Gaps = 0/94 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT+PEAL AAA L+ +GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+
Sbjct 1 MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN 94
YQ VSAQA AIH+ VN L S+GSY TE AN
Sbjct 61 WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETAN 94
>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/87 (80%), Positives = 76/87 (88%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFV TQPEAL AAAG+L IGSAL+AQNAAAATPTTGVVPAAADEVSALTAAQFAAHA
Sbjct 1 MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ++SAQA AIH+ FV TL S+ SY
Sbjct 61 MYQSISAQAEAIHQAFVATLNSSANSY 87
>gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_12076 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=98
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/89 (68%), Positives = 69/89 (78%), Gaps = 0/89 (0%)
Query 3 FVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQIY 62
+VT QPEA+ AAA LQ IG+AL AQ A + P TGVVPAAAD VS L AA+FA H Q +
Sbjct 2 YVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAF 61
Query 63 QAVSAQAAAIHEMFVNTLQMSSGSYAATE 91
QAVSA+AAA+HEMFV TLQ S+GSYA TE
Sbjct 62 QAVSAEAAAVHEMFVTTLQTSAGSYAGTE 90
>gi|118616216|ref|YP_904548.1| PE-PGRS family protein family protein [Mycobacterium ulcerans
Agy99]
gi|118568326|gb|ABL03077.1| PE-PGRS family protein family protein [Mycobacterium ulcerans
Agy99]
Length=99
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/98 (67%), Positives = 74/98 (76%), Gaps = 0/98 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M+ VT+ PEAL AAA +L +G+ +A NAAA P TGVVPAAADEVSALTAA FAAH
Sbjct 1 MASVTSAPEALTAAALNLHSVGAGTSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA 98
+ Q +SAQA AI+EMFV TLQ GSYA TEAANA AA
Sbjct 61 MCQTLSAQAQAIYEMFVTTLQACGGSYAETEAANAVAA 98
>gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463687|ref|YP_880590.1| PE family protein [Mycobacterium avium 104]
gi|41397032|gb|AAS04893.1| PE_6 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164974|gb|ABK65871.1| PE family protein [Mycobacterium avium 104]
gi|212595794|gb|ACJ35523.1| PE5 [Mycobacterium avium subsp. avium]
Length=278
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/94 (65%), Positives = 73/94 (78%), Gaps = 0/94 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT+PEAL A A L+G+GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+
Sbjct 1 MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN 94
YQ VSAQA AIH+ V L ++ SY ATEAAN
Sbjct 61 WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAAN 94
>gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=173
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/94 (65%), Positives = 73/94 (78%), Gaps = 0/94 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT+PEAL A A L+G+GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+
Sbjct 1 MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN 94
YQ VSAQA AIH+ V L ++ SY ATEAAN
Sbjct 61 WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAAN 94
>gi|296165819|ref|ZP_06848318.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898827|gb|EFG78334.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/99 (75%), Positives = 81/99 (82%), Gaps = 0/99 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M VTTQP A+ AAA QGIGSA++A N AAA P TGVVPAAADEVS LTA QFAAHAQ
Sbjct 1 MMLVTTQPAAMTAAADDAQGIGSAMSAGNVAAAAPRTGVVPAAADEVSGLTALQFAAHAQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAAG 99
IYQAVSAQAAA+HEMF +TL +S+ SYA TEAANA AAG
Sbjct 61 IYQAVSAQAAAVHEMFASTLGVSADSYALTEAANAVAAG 99
>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/99 (67%), Positives = 83/99 (84%), Gaps = 1/99 (1%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTT-GVVPAAADEVSALTAAQFAAHA 59
MSF+TTQPE LAAAAG L+ IGSA+ AQNAAAA PTT GV+PAAADE+S L A F A+
Sbjct 1 MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG 60
Query 60 QIYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA 98
+YQ VSA+AAA++++FV TL +S+G+YAATEAAN++AA
Sbjct 61 TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA 99
>gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395965|gb|AAS03831.1| PE_5 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457563|gb|EGO36568.1| PE family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=99
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/90 (69%), Positives = 70/90 (78%), Gaps = 0/90 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
M +VT QPEA+ AAA LQ IG+AL AQ A + P TGVVPAAAD VS L AA+FA H Q
Sbjct 1 MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAAT 90
+QAVSA+AAAIHEMFV TLQ S+GSYAAT
Sbjct 61 AFQAVSAEAAAIHEMFVTTLQTSAGSYAAT 90
>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/97 (63%), Positives = 70/97 (73%), Gaps = 0/97 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MS VT QPE +A A LQ I SA A + A PTTGVVP AAD VS LTAAQFAAHA+
Sbjct 1 MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAA 97
+YQA+SAQAAA+ + V L +S+GSYAATEAAN A
Sbjct 61 VYQAISAQAAAVQDQLVTVLGISAGSYAATEAANTVA 97
>gi|296165770|ref|ZP_06848283.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898876|gb|EFG78369.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=105
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/87 (73%), Positives = 69/87 (80%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
+SFVTTQPEAL+AAAG L IGSAL AQNAAA+ PTTGVVPAA DEVS L AAQFA HAQ
Sbjct 7 VSFVTTQPEALSAAAGKLAVIGSALAAQNAAASAPTTGVVPAATDEVSVLIAAQFATHAQ 66
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ V AQA IHE FV L + +GSY
Sbjct 67 MYQTVCAQATMIHESFVKMLHLGAGSY 93
>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/97 (63%), Positives = 70/97 (73%), Gaps = 0/97 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MS VT QPE +A A LQ I SA A + A PTTGVVP AAD VS LTAAQFAAHA+
Sbjct 1 MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAA 97
+YQA+SAQAAA+ + V L +S+GSYAATEAAN A
Sbjct 61 VYQAISAQAAAVQDELVTVLGISAGSYAATEAANTVA 97
>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC
12478]
Length=99
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/90 (68%), Positives = 72/90 (80%), Gaps = 0/90 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSF+T QP+ LAAAA +L +G+AL+A N+AAA PTTGV+P AADEVSAL A QFAAHA
Sbjct 1 MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAAT 90
YQAVSA+AA IH+ V TL S+GSYAAT
Sbjct 61 TYQAVSARAAGIHDQLVATLAASAGSYAAT 90
>gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium colombiense CECT 3035]
gi|342130390|gb|EGT83705.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=268
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/94 (63%), Positives = 71/94 (76%), Gaps = 0/94 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT+PEAL A A LQ +GS+++AQNAAAA PTT + PAAADEVSAL AAQF+A+
Sbjct 1 MSFVTTRPEALLATASMLQALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAAN 94
YQ VSAQA A+H+ V L ++GSY TE AN
Sbjct 61 WYQQVSAQAKAVHQTMVANLNSNAGSYGETETAN 94
>gi|333989638|ref|YP_004522252.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
gi|333485606|gb|AEF34998.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/87 (74%), Positives = 71/87 (82%), Gaps = 0/87 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFV+ QPE L AAAG L GIG+A+ AQNAAAA TTGVVPAAAD VSALTAAQF AHA
Sbjct 1 MSFVSAQPEELTAAAGELTGIGAAMAAQNAAAAAATTGVVPAAADPVSALTAAQFVAHAD 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSY 87
+YQ+VSAQA A H+MFV TL S+GSY
Sbjct 61 LYQSVSAQANATHQMFVTTLMTSAGSY 87
>gi|240171995|ref|ZP_04750654.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=170
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/98 (67%), Positives = 75/98 (77%), Gaps = 0/98 (0%)
Query 1 MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ 60
MSFVTT+P AL AAA +L +GS++ QNAAAA PTTG+VP AAD+ SAL AAQFAA+
Sbjct 1 MSFVTTRPAALTAAASALHIVGSSMATQNAAAAAPTTGLVPTAADQASALQAAQFAAYGT 60
Query 61 IYQAVSAQAAAIHEMFVNTLQMSSGSYAATEAANAAAA 98
YQ VSAQA IH+M VNTL S+GSYA TEAAN AA
Sbjct 61 WYQQVSAQAMVIHQMLVNTLGSSAGSYAKTEAANRTAA 98
Lambda K H
0.309 0.113 0.291
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129711308684
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40