BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1791

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...   182    2e-44
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...   182    2e-44
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...   147    5e-34
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...   147    6e-34
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...   145    1e-33
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...   144    6e-33
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...   140    6e-32
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...   140    7e-32
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...   140    7e-32
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...   138    2e-31
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...   137    4e-31
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...   135    2e-30
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...   134    3e-30
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...   134    5e-30
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...   134    6e-30
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...   131    4e-29
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...   130    4e-29
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...   129    2e-28
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...   127    6e-28
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...   125    2e-27
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...   117    6e-25
gi|118616216|ref|YP_904548.1|  PE-PGRS family protein family prot...   117    7e-25
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...   117    7e-25
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...   115    1e-24
gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...   114    5e-24
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...   114    6e-24
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...   113    1e-23
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...   112    1e-23
gi|240172899|ref|ZP_04751558.1|  PE family protein [Mycobacterium...   112    1e-23
gi|212596283|gb|ACJ35566.1|  PE5 [Mycobacterium intracellulare AT...   112    2e-23
gi|254822878|ref|ZP_05227879.1|  PE family protein [Mycobacterium...   112    2e-23
gi|41408674|ref|NP_961510.1|  hypothetical protein MAP2576c [Myco...   111    4e-23
gi|254774223|ref|ZP_05215739.1|  PE family protein [Mycobacterium...   110    5e-23
gi|240172021|ref|ZP_04750680.1|  PE family protein, PE19_1 [Mycob...   110    5e-23
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...   110    1e-22
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...   109    1e-22
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...   109    1e-22
gi|118465345|ref|YP_882101.1|  PE family protein [Mycobacterium a...   108    4e-22
gi|296165819|ref|ZP_06848318.1|  PE family protein [Mycobacterium...   107    4e-22
gi|183984422|ref|YP_001852713.1|  PE family protein, PE8 [Mycobac...   107    9e-22
gi|118619702|ref|YP_908034.1|  PE family protein [Mycobacterium u...   106    1e-21
gi|254775390|ref|ZP_05216906.1|  hypothetical protein MaviaA2_120...   106    1e-21
gi|342862086|ref|ZP_08718729.1|  PE family protein [Mycobacterium...   106    1e-21
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...   106    1e-21
gi|296165770|ref|ZP_06848283.1|  PE family protein [Mycobacterium...   105    3e-21
gi|254821315|ref|ZP_05226316.1|  PE family protein, PE19_1 [Mycob...   104    4e-21
gi|333991599|ref|YP_004524213.1|  PE-PGRS family protein [Mycobac...   104    4e-21
gi|240171995|ref|ZP_04750654.1|  PE family protein [Mycobacterium...   104    4e-21
gi|333989638|ref|YP_004522252.1|  PE-PGRS family protein [Mycobac...   103    9e-21
gi|41407612|ref|NP_960448.1|  hypothetical protein MAP1514 [Mycob...   103    1e-20


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 Length=105

 Score =  182 bits (462),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1    MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
            MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  7    MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  61   MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
            MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG
Sbjct  67   MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  105


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score =  182 bits (461),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
           MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  147 bits (371),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 88/99 (89%), Positives = 91/99 (92%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG+T++AQNAAAAAPTTGVVPAAADEVSALTAAQFAAH Q
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
           MYQ VSAQAAAIHEMFVNTL  SSGSYA TEAANAAA G
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTEAANAAATG  99


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score =  147 bits (370),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 76/87 (88%), Positives = 83/87 (96%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MS+VTTQPEALAAAA+ LQGIG+T+++QNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQA+AIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  145 bits (367),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 75/87 (87%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MS+VTTQPEALAAAA+ LQGIG+T+++QNAAAAAPTTGVVPAAADEVSALTAAQF AHAQ
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQA+AIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  144 bits (362),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 79/87 (91%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG+T++AQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score =  140 bits (353),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 78/87 (90%), Positives = 81/87 (94%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG+T++AQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAAAIHE FVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  140 bits (352),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 78/87 (90%), Positives = 81/87 (94%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG+T++AQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAAAIHE FVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score =  140 bits (352),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 83/87 (96%), Positives = 84/87 (97%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAANLQGIGTTM+AQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score =  138 bits (348),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 77/87 (89%), Positives = 80/87 (92%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG+T++AQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQA AIHE FVNTL  SSGSY
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 81/87 (94%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAAANLQGIGTTM+AQNAAAAAPTTGVVPAAADEVSALTAAQFA HAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAA IHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  135 bits (340),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 87/99 (88%), Positives = 91/99 (92%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEAL+AAA +LQ IG+ +NAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
           MYQ VSAQAAAIHEMFVNTL  SSGSYA TEAANAAA G
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTEAANAAATG  99


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 81/87 (94%), Positives = 84/87 (97%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA++LQGIGTTM+AQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score =  134 bits (337),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/87 (88%), Positives = 79/87 (91%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG T++AQNAAAAAPTTGVVPAAADEVSALTAAQFAA+AQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VSAQAAAIHE FVNTL  SS SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  134 bits (336),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 71/87 (82%), Positives = 78/87 (90%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA NLQ IG+ +NAQNAAA+APTTGVVPAAADEVSALTAAQFA HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ+V+AQAAAIHEMFV TL  S+ SY
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEALAAAA +LQGIG+ +NAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score =  130 bits (328),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 74/98 (76%), Positives = 79/98 (81%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+FVT+ PEAL AAA NL  +G  M+A NAAA AP TGVVPAAADEVSALTAA FAAH  
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
           MYQT+SAQA AIHEMFV TL AS GSYA TEAANA AA
Sbjct  61  MYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIAA  98


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score =  129 bits (323),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 76/87 (88%), Positives = 80/87 (92%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M FVTTQPEALAAAA +LQGIG+ +NAQNAAAA PTTGVVPAAADEVSALTAAQFAAHAQ
Sbjct  1   MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ VSAQAAAIHEMFVNTL  SSGSY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  127 bits (319),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 77/99 (78%), Positives = 82/99 (83%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M  VT  P+ L AAA  LQGIG+ M+A+NA AAAPTTGVVPAAADEVSALTA QFAAHAQ
Sbjct  1   MFSVTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
           MYQ VSAQAAAIHEMF NTL  S+ SYA TEAANAAAAG
Sbjct  61  MYQAVSAQAAAIHEMFANTLGVSADSYAVTEAANAAAAG  99


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score =  125 bits (315),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 64/91 (71%), Positives = 73/91 (81%), Gaps = 0/91 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT PEA+AA A+NLQ IG+ M AQN AAAAPTTG+ PA ADEVS L A QFAA+ Q
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATE  91
           +YQ +SAQAAAI EMFVNTL  S+ SY +TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score =  117 bits (292),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 64/87 (74%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV TQPEALA+AA+ L+GIG+ + AQN AAA PTT + PAAADEVSALTAA F+AHAQ
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
            YQ VSAQAAAIHE FV TL  SS SY
Sbjct  61  AYQEVSAQAAAIHEAFVRTLALSSESY  87


>gi|118616216|ref|YP_904548.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
 gi|118568326|gb|ABL03077.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score =  117 bits (292),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 69/98 (71%), Positives = 75/98 (77%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+ VT+ PEAL AAA NL  +G   +A NAAA AP TGVVPAAADEVSALTAA FAAH  
Sbjct  1   MASVTSAPEALTAAALNLHSVGAGTSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
           M QT+SAQA AI+EMFV TL A  GSYA TEAANA AA
Sbjct  61  MCQTLSAQAQAIYEMFVTTLQACGGSYAETEAANAVAA  98


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score =  117 bits (292),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 63/99 (64%), Positives = 79/99 (80%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59
           MSF+TTQPE LAAAA  L+ IG TM+A+N AA APTT GV+PAAADEVSAL A+ F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  60  QMYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
            +YQ VSA+AA +++MFV TL  S+G+YAA E AN++AA
Sbjct  61  TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSSAA  99


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  115 bits (289),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 69/98 (71%), Positives = 79/98 (81%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVT QPE LAA A +L+GIG+ +  QNAAA+  TTGV+PA ADEVSALTA QFAAHAQ
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
           MYQ VSAQAAA +++FV TL  S+GSYAATEA N  AA
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIAA  98


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 65/99 (66%), Positives = 70/99 (71%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF T QPE LAAAA  L+ +G T+ A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
            YQT SA+AA IHE FV TL  S+ SYA TEAANA   G
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 67/87 (78%), Positives = 73/87 (84%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVT++PEAL +AA NLQ IG+ MNA NAAA AP TGVVPAAADEVSALTAA FAAH  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ VSAQAAAIHE+FV TL AS GSY
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSY  87


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 64/99 (65%), Positives = 69/99 (70%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF T QPE LAAAA  L+ +G T+   NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSF-TAQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
            YQT SA+AA IHE FV TL  S+ SYA TEAANA   G
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 69/87 (80%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF+TTQP+ LAAAA  LQ IG TM A+N AAA PTTGV+PAAADEVS L A+ F A+  
Sbjct  1   MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ +SA+AAA++EM VNTL  S+G+Y
Sbjct  61  LYQQISAEAAAMYEMLVNTLGVSAGTY  87


>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 61/87 (71%), Positives = 72/87 (83%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+FV TQPE LAAAA NLQ IG+ ++AQN AA+A TT V PAAAD+VSALTAA+F+AHAQ
Sbjct  1   MTFVVTQPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ VSAQAAAIH+ FV  L AS+ SY
Sbjct  61  VYQVVSAQAAAIHQAFVAALTASANSY  87


>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265

 Score =  112 bits (281),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 63/94 (68%), Positives = 75/94 (80%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL AAA+ L+ +G++M+AQNAAAAAPTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAAN  94
            YQ VSAQA AIH+  VN L  S+GSY  TE AN
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETAN  94


>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 63/94 (68%), Positives = 75/94 (80%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL AAA+ L+ +G++M+AQNAAAAAPTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAAN  94
            YQ VSAQA AIH+  VN L  S+GSY  TE AN
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETAN  94


>gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463687|ref|YP_880590.1| PE family protein [Mycobacterium avium 104]
 gi|41397032|gb|AAS04893.1| PE_6 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164974|gb|ABK65871.1| PE family protein [Mycobacterium avium 104]
 gi|212595794|gb|ACJ35523.1| PE5 [Mycobacterium avium subsp. avium]
Length=278

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 62/94 (66%), Positives = 75/94 (80%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL A A+ L+G+G++M+AQNAAAAAPTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAAN  94
            YQ VSAQA AIH+  V  L  ++ SY ATEAAN
Sbjct  61  WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAAN  94


>gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=173

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 62/94 (66%), Positives = 75/94 (80%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL A A+ L+G+G++M+AQNAAAAAPTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAAN  94
            YQ VSAQA AIH+  V  L  ++ SY ATEAAN
Sbjct  61  WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAAN  94


>gi|240172021|ref|ZP_04750680.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 67/87 (78%), Positives = 76/87 (88%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQP ALA AA  L+GIG+ +++QNAAAAAPTTGVVPAA DEVSAL AAQFAAHA+
Sbjct  1   MSFVTTQPAALAVAANTLEGIGSALSSQNAAAAAPTTGVVPAAVDEVSALAAAQFAAHAE  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ VS+QA+AIHEMF +TL  SSGSY
Sbjct  61  MYQVVSSQASAIHEMFASTLTISSGSY  87


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 62/90 (69%), Positives = 72/90 (80%), Gaps = 0/90 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF+T QP+ LAAAAANL  +G  ++A N+AAAAPTTGV+P AADEVSAL A QFAAHA 
Sbjct  1   MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAAT  90
            YQ VSA+AA IH+  V TL AS+GSYAAT
Sbjct  61  TYQAVSARAAGIHDQLVATLAASAGSYAAT  90


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 61/90 (68%), Positives = 70/90 (78%), Gaps = 0/90 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M+FVT QPE+L  AA+ L  IG+ + AQN+A AAP TGV PAAADEVS LTAAQFA H Q
Sbjct  1   MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMTGVAPAAADEVSLLTAAQFARHGQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAAT  90
            +Q +SAQAAAIHE FV TL  S+GSYAAT
Sbjct  61  TFQALSAQAAAIHENFVTTLQVSAGSYAAT  90


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 66/87 (76%), Positives = 74/87 (86%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV TQPEAL AAA NL  IG+ ++AQNAAAA PTTGVVPAAADEVSALTAAQFAAHA 
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQ++SAQA AIH+ FV TL +S+ SY
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium avium 104]
 gi|118166632|gb|ABK67529.1| PE family protein [Mycobacterium avium 104]
 gi|212595805|gb|ACJ35524.1| PE6 [Mycobacterium avium subsp. avium]
Length=99

 Score =  108 bits (269),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 59/91 (65%), Positives = 68/91 (75%), Gaps = 0/91 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M +VT QPEA+ AAA  LQ IGT + AQ  A +AP TGVVPAAAD VS L AA+FA H Q
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATE  91
            +Q VSA+AAA+HEMFV TL  S+GSYA TE
Sbjct  61  AFQAVSAEAAAVHEMFVTTLQTSAGSYAGTE  91


>gi|296165819|ref|ZP_06848318.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898827|gb|EFG78334.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  107 bits (268),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 72/99 (73%), Positives = 80/99 (81%), Gaps = 0/99 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M  VTTQP A+ AAA + QGIG+ M+A N AAAAP TGVVPAAADEVS LTA QFAAHAQ
Sbjct  1   MMLVTTQPAAMTAAADDAQGIGSAMSAGNVAAAAPRTGVVPAAADEVSGLTALQFAAHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAAG  99
           +YQ VSAQAAA+HEMF +TL  S+ SYA TEAANA AAG
Sbjct  61  IYQAVSAQAAAVHEMFASTLGVSADSYALTEAANAVAAG  99


>gi|183984422|ref|YP_001852713.1| PE family protein, PE8 [Mycobacterium marinum M]
 gi|183177748|gb|ACC42858.1| PE family protein, PE8 [Mycobacterium marinum M]
Length=274

 Score =  107 bits (266),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 64/98 (66%), Positives = 75/98 (77%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF+ T PE L AAAA L  IG++M+AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTVIAPAALDEVSALQAALFTAYGT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
            YQ VSA A A+H+MFVNTL AS+G+Y ATE  N+AAA
Sbjct  61  YYQQVSADAQAMHDMFVNTLGASAGTYGATENLNSAAA  98


>gi|118619702|ref|YP_908034.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571812|gb|ABL06563.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=274

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 64/98 (66%), Positives = 75/98 (77%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSF+ T PE L AAAA L  IG++M+AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTVIAPAALDEVSALQAALFTAYGT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
            YQ VSA A A+H+MFVNTL AS+G+Y ATE  N+AAA
Sbjct  61  YYQQVSADAQAMHDMFVNTLGASAGTYGATENLNSAAA  98


>gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_12076 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=98

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 58/89 (66%), Positives = 67/89 (76%), Gaps = 0/89 (0%)

Query  3   FVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQMY  62
           +VT QPEA+ AAA  LQ IGT + AQ  A +AP TGVVPAAAD VS L AA+FA H Q +
Sbjct  2   YVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAF  61

Query  63  QTVSAQAAAIHEMFVNTLVASSGSYAATE  91
           Q VSA+AAA+HEMFV TL  S+GSYA TE
Sbjct  62  QAVSAEAAAVHEMFVTTLQTSAGSYAGTE  90


>gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130390|gb|EGT83705.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=268

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 60/94 (64%), Positives = 74/94 (79%), Gaps = 0/94 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+PEAL A A+ LQ +G++M+AQNAAAAAPTT + PAAADEVSAL AAQF+A+  
Sbjct  1   MSFVTTRPEALLATASMLQALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAAN  94
            YQ VSAQA A+H+  V  L +++GSY  TE AN
Sbjct  61  WYQQVSAQAKAVHQTMVANLNSNAGSYGETETAN  94


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 65/99 (66%), Positives = 81/99 (82%), Gaps = 1/99 (1%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59
           MSF+TTQPE LAAAA  L+ IG+ M AQNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60  QMYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
            +YQ VSA+AAA++++FV TL  S+G+YAATEAAN++AA
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99


>gi|296165770|ref|ZP_06848283.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898876|gb|EFG78369.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=105

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 62/87 (72%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           +SFVTTQPEAL+AAA  L  IG+ + AQNAAA+APTTGVVPAA DEVS L AAQFA HAQ
Sbjct  7   VSFVTTQPEALSAAAGKLAVIGSALAAQNAAASAPTTGVVPAATDEVSVLIAAQFATHAQ  66

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQTV AQA  IHE FV  L   +GSY
Sbjct  67  MYQTVCAQATMIHESFVKMLHLGAGSY  93


>gi|254821315|ref|ZP_05226316.1| PE family protein, PE19_1 [Mycobacterium intracellulare ATCC 
13950]
 gi|212596340|gb|ACJ35570.1| PE8 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score =  104 bits (260),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 62/87 (72%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEAL AAA NL  IG+ + AQNAAA+APT GVVPAA DEVS L AAQFA HAQ
Sbjct  1   MSFVTTQPEALTAAAQNLAAIGSALAAQNAAASAPTMGVVPAATDEVSVLVAAQFATHAQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           MYQTV AQA  IH+ FV  L   +GSY
Sbjct  61  MYQTVCAQATVIHDSFVRMLHFGAGSY  87


>gi|333991599|ref|YP_004524213.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333487567|gb|AEF36959.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  104 bits (260),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 59/80 (74%), Positives = 67/80 (84%), Gaps = 0/80 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTTQPEAL AA ANL+ IG+++ A +AAAA+PTTGVVPAAAD+VSALTA QFA H Q
Sbjct  1   MSFVTTQPEALLAAVANLRAIGSSLAAHSAAAASPTTGVVPAAADQVSALTAVQFANHGQ  60

Query  61  MYQTVSAQAAAIHEMFVNTL  80
            YQ VS QA A+HEMFVN L
Sbjct  61  SYQAVSTQAVAVHEMFVNAL  80


>gi|240171995|ref|ZP_04750654.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=170

 Score =  104 bits (259),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 66/98 (68%), Positives = 77/98 (79%), Gaps = 0/98 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFVTT+P AL AAA+ L  +G++M  QNAAAAAPTTG+VP AAD+ SAL AAQFAA+  
Sbjct  1   MSFVTTRPAALTAAASALHIVGSSMATQNAAAAAPTTGLVPTAADQASALQAAQFAAYGT  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAATEAANAAAA  98
            YQ VSAQA  IH+M VNTL +S+GSYA TEAAN  AA
Sbjct  61  WYQQVSAQAMVIHQMLVNTLGSSAGSYAKTEAANRTAA  98


>gi|333989638|ref|YP_004522252.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485606|gb|AEF34998.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  103 bits (257),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 64/87 (74%), Positives = 70/87 (81%), Gaps = 0/87 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           MSFV+ QPE L AAA  L GIG  M AQNAAAAA TTGVVPAAAD VSALTAAQF AHA 
Sbjct  1   MSFVSAQPEELTAAAGELTGIGAAMAAQNAAAAAATTGVVPAAADPVSALTAAQFVAHAD  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87
           +YQ+VSAQA A H+MFV TL+ S+GSY
Sbjct  61  LYQSVSAQANATHQMFVTTLMTSAGSY  87


>gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395965|gb|AAS03831.1| PE_5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457563|gb|EGO36568.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 60/90 (67%), Positives = 68/90 (76%), Gaps = 0/90 (0%)

Query  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60
           M +VT QPEA+ AAA  LQ IGT + AQ  A +AP TGVVPAAAD VS L AA+FA H Q
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  MYQTVSAQAAAIHEMFVNTLVASSGSYAAT  90
            +Q VSA+AAAIHEMFV TL  S+GSYAAT
Sbjct  61  AFQAVSAEAAAIHEMFVTTLQTSAGSYAAT  90



Lambda     K      H
   0.309    0.112    0.288 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40