BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1794
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608931|ref|NP_216310.1| hypothetical protein Rv1794 [Mycoba... 611 4e-173
gi|240172854|ref|ZP_04751513.1| hypothetical protein MkanA1_2631... 597 7e-169
gi|183982683|ref|YP_001850974.1| hypothetical protein MMAR_2676 ... 596 2e-168
gi|118618464|ref|YP_906796.1| hypothetical protein MUL_3081 [Myc... 595 3e-168
gi|296164782|ref|ZP_06847343.1| conserved hypothetical protein [... 587 1e-165
gi|254820295|ref|ZP_05225296.1| hypothetical protein MintA_10221... 585 3e-165
gi|342861302|ref|ZP_08717950.1| hypothetical protein MCOL_20561 ... 583 8e-165
gi|41407607|ref|NP_960443.1| hypothetical protein MAP1509 [Mycob... 581 6e-164
gi|336457558|gb|EGO36563.1| hypothetical protein MAPs_21140 [Myc... 576 1e-162
gi|333990537|ref|YP_004523151.1| hypothetical protein JDM601_189... 556 1e-156
gi|15827810|ref|NP_302073.1| hypothetical protein ML1540 [Mycoba... 554 7e-156
gi|240173074|ref|ZP_04751732.1| hypothetical protein MkanA1_2742... 231 1e-58
gi|169245927|gb|ACA50948.1| conserved protein [Mycobacterium mar... 87.8 2e-15
gi|296164028|ref|ZP_06846651.1| conserved protein [Mycobacterium... 80.9 2e-13
gi|119855162|ref|YP_935767.1| hypothetical protein Mkms_5777 [My... 62.4 8e-08
gi|296165450|ref|ZP_06847986.1| conserved hypothetical protein [... 59.3 7e-07
gi|333989614|ref|YP_004522228.1| hypothetical protein JDM601_097... 55.8 8e-06
gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 ... 50.8 3e-04
gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_... 48.1 0.002
gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_0347... 47.4 0.003
gi|226363324|ref|YP_002781106.1| hypothetical protein ROP_39140 ... 47.0 0.004
gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_0... 46.6 0.005
gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 ... 46.2 0.006
gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 ... 44.7 0.016
gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium ... 43.9 0.032
gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 ... 43.5 0.036
gi|289760400|ref|ZP_06519778.1| conserved hypothetical protein [... 43.1 0.053
gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [... 42.7 0.061
gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycoba... 42.7 0.064
gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocar... 42.4 0.093
gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [M... 41.2 0.23
gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_043... 40.4 0.33
gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837... 39.7 0.53
gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 ... 39.7 0.53
gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881... 39.7 0.57
gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycoba... 39.7 0.58
gi|270293185|ref|ZP_06199396.1| single-stranded-DNA-specific exo... 38.9 1.0
gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [... 38.5 1.4
gi|342860124|ref|ZP_08716776.1| hypothetical protein MCOL_14635 ... 38.1 1.8
gi|340723971|ref|XP_003400360.1| PREDICTED: LOW QUALITY PROTEIN:... 38.1 1.9
gi|328784122|ref|XP_003250400.1| PREDICTED: DEP domain-containin... 37.7 2.3
gi|54022099|ref|YP_116341.1| hypothetical protein nfa1350 [Nocar... 37.0 3.6
gi|289168420|ref|YP_003446689.1| single-stranded DNA-specific ex... 37.0 3.6
gi|343388804|gb|EGV01389.1| single-stranded-DNA-specific exonucl... 37.0 4.0
gi|342831685|gb|EGU65996.1| single-stranded-DNA-specific exonucl... 37.0 4.3
gi|342163306|ref|YP_004767945.1| single-stranded-DNA-specific ex... 37.0 4.3
gi|334274112|gb|EGL92440.1| single-stranded-DNA-specific exonucl... 36.6 4.4
gi|194290140|ref|YP_002006047.1| hypothetical protein RALTA_A204... 36.6 4.4
gi|315612726|ref|ZP_07887637.1| single-stranded-DNA-specific exo... 36.6 4.4
gi|322374747|ref|ZP_08049261.1| single-stranded-DNA-specific exo... 36.6 4.4
>gi|15608931|ref|NP_216310.1| hypothetical protein Rv1794 [Mycobacterium tuberculosis H37Rv]
gi|15841263|ref|NP_336300.1| hypothetical protein MT1843 [Mycobacterium tuberculosis CDC1551]
gi|31792982|ref|NP_855475.1| hypothetical protein Mb1822 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=300
Score = 611 bits (1576), Expect = 4e-173, Method: Compositional matrix adjust.
Identities = 300/300 (100%), Positives = 300/300 (100%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL
Sbjct 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML
Sbjct 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|240172854|ref|ZP_04751513.1| hypothetical protein MkanA1_26312 [Mycobacterium kansasii ATCC
12478]
Length=300
Score = 597 bits (1539), Expect = 7e-169, Method: Compositional matrix adjust.
Identities = 290/300 (97%), Positives = 298/300 (99%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTD+NDWLNEHPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDNNDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IVV D VNEQVAARM+VLAAPDLEVVALLSRGKLLYGV+DDENQPPGSRDIPDNEFRVVL
Sbjct 61 IVVGDTVNEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDDENQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVGNDITVDDV+V+DSASIAALV+DGLESIHHADPAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGNDITVDDVSVTDSASIAALVIDGLESIHHADPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISA+TVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISASTVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|183982683|ref|YP_001850974.1| hypothetical protein MMAR_2676 [Mycobacterium marinum M]
gi|183176009|gb|ACC41119.1| conserved protein [Mycobacterium marinum M]
Length=300
Score = 596 bits (1536), Expect = 2e-168, Method: Compositional matrix adjust.
Identities = 290/300 (97%), Positives = 298/300 (99%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IVV D VNEQVAARM+VLAAPDLEVVALLSRGKLLYGV+D+E+QPPGSRDIPDNEFRVVL
Sbjct 61 IVVGDTVNEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVGNDITVDDV+VSDSASIAALV+DGLESIHHADPAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGNDITVDDVSVSDSASIAALVIDGLESIHHADPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISA+TVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISASTVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|118618464|ref|YP_906796.1| hypothetical protein MUL_3081 [Mycobacterium ulcerans Agy99]
gi|118570574|gb|ABL05325.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=300
Score = 595 bits (1533), Expect = 3e-168, Method: Compositional matrix adjust.
Identities = 289/300 (97%), Positives = 298/300 (99%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IVV D +NEQVAARM+VLAAPDLEVVALLSRGKLLYGV+D+E+QPPGSRDIPDNEFRVVL
Sbjct 61 IVVGDTLNEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVGNDITVDDV+VSDSASIAALV+DGLESIHHADPAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGNDITVDDVSVSDSASIAALVIDGLESIHHADPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISA+TVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISASTVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|296164782|ref|ZP_06847343.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899859|gb|EFG79304.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=300
Score = 587 bits (1512), Expect = 1e-165, Method: Compositional matrix adjust.
Identities = 283/300 (95%), Positives = 294/300 (98%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQ+ RTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct 1 MDQQTARTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IV ND VNE VAARM+VLAAPDLEV+ALLSRGKLLYGV+DDENQPPGSRDIPDNEFRVVL
Sbjct 61 IVENDQVNEHVAARMRVLAAPDLEVIALLSRGKLLYGVVDDENQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVG+DITVDDV ++DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGSDITVDDVAIADSASIASLVLDALESIHHAEPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|254820295|ref|ZP_05225296.1| hypothetical protein MintA_10221 [Mycobacterium intracellulare
ATCC 13950]
Length=300
Score = 585 bits (1508), Expect = 3e-165, Method: Compositional matrix adjust.
Identities = 285/300 (95%), Positives = 293/300 (98%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IV ND VNE VAARMKVLAAPDLEVVALLSRGKL YGV+DDENQPPGSRDIPDNEFRVVL
Sbjct 61 IVENDEVNEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|342861302|ref|ZP_08717950.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT
3035]
gi|342131202|gb|EGT84483.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT
3035]
Length=300
Score = 583 bits (1504), Expect = 8e-165, Method: Compositional matrix adjust.
Identities = 284/300 (95%), Positives = 293/300 (98%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDS+DWLNEHPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSSDWLNEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IV ND VNE VAARMKVLAAPDLEVVALLSRGKL YGV+DDENQPPGSRDIPDNEFRVVL
Sbjct 61 IVENDQVNEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|41407607|ref|NP_960443.1| hypothetical protein MAP1509 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462612|ref|YP_882106.1| hypothetical protein MAV_2920 [Mycobacterium avium 104]
gi|254775396|ref|ZP_05216912.1| hypothetical protein MaviaA2_12106 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395960|gb|AAS03826.1| hypothetical protein MAP_1509 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118163899|gb|ABK64796.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=300
Score = 581 bits (1497), Expect = 6e-164, Method: Compositional matrix adjust.
Identities = 282/300 (94%), Positives = 293/300 (98%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLN+HPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNDHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IV D VNEQVAARM+VLAAPDLEV+ALLSRGKL YGVIDD+NQPPGSRDIPDNEFRVVL
Sbjct 61 IVEGDQVNEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|336457558|gb|EGO36563.1| hypothetical protein MAPs_21140 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=300
Score = 576 bits (1485), Expect = 1e-162, Method: Compositional matrix adjust.
Identities = 281/300 (94%), Positives = 292/300 (98%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSND LN+HPGMAVMREQG
Sbjct 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDRLNDHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IV D VNEQVAARM+VLAAPDLEV+ALLSRGKL YGVIDD+NQPPGSRDIPDNEFRVVL
Sbjct 61 IVEGDQVNEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct 121 ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
>gi|333990537|ref|YP_004523151.1| hypothetical protein JDM601_1897 [Mycobacterium sp. JDM601]
gi|333486505|gb|AEF35897.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=299
Score = 556 bits (1433), Expect = 1e-156, Method: Compositional matrix adjust.
Identities = 268/296 (91%), Positives = 286/296 (97%), Gaps = 0/296 (0%)
Query 5 STRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVN 64
STRTDITVNV+GFW+LQALLDIRHVAPELRCRPYVSTDSNDWL+EHPGMAVMREQGIVV+
Sbjct 4 STRTDITVNVEGFWLLQALLDIRHVAPELRCRPYVSTDSNDWLSEHPGMAVMREQGIVVD 63
Query 65 DAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRG 124
D VNE VAARMKVLAAPDLEVVALLS GKL YGVIDDE+QPPG+RDIPDNEFRV+LARRG
Sbjct 64 DQVNETVAARMKVLAAPDLEVVALLSLGKLRYGVIDDEDQPPGTRDIPDNEFRVLLARRG 123
Query 125 QHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATK 184
+HWVSAVRVG DITVDDV+V+D+ASIAALV+DG+ESIHHADPA I AVNVPMEEMLEAT+
Sbjct 124 EHWVSAVRVGTDITVDDVSVTDAASIAALVIDGMESIHHADPAQITAVNVPMEEMLEATQ 183
Query 185 SWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSL 244
SWQ+SGFN+F+GGDLRRMGISAATVAALGQALS+PAAE AVYARQYRDDAKGPSASVLSL
Sbjct 184 SWQDSGFNIFTGGDLRRMGISAATVAALGQALSEPAAEAAVYARQYRDDAKGPSASVLSL 243
Query 245 KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYG WKTH RV
Sbjct 244 KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGAWKTHRRV 299
>gi|15827810|ref|NP_302073.1| hypothetical protein ML1540 [Mycobacterium leprae TN]
gi|221230287|ref|YP_002503703.1| hypothetical protein MLBr_01540 [Mycobacterium leprae Br4923]
gi|4455687|emb|CAB36587.1| hypothetical protein MLCB596.31 [Mycobacterium leprae]
gi|13093362|emb|CAC30491.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933394|emb|CAR71635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=300
Score = 554 bits (1427), Expect = 7e-156, Method: Compositional matrix adjust.
Identities = 264/300 (88%), Positives = 283/300 (95%), Gaps = 0/300 (0%)
Query 1 MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG 60
MD QSTRTDITVNVDGFW+LQALLDIRHVAPELRCRP+VSTDSNDWL+EHPGMAVMREQG
Sbjct 1 MDHQSTRTDITVNVDGFWLLQALLDIRHVAPELRCRPFVSTDSNDWLHEHPGMAVMREQG 60
Query 61 IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL 120
IVVN VNE VA RM+V AAPDLEVVALLSRGKLLYG ++DENQPPGSRDIP+NEFRVVL
Sbjct 61 IVVNGNVNEHVATRMRVFAAPDLEVVALLSRGKLLYGAVNDENQPPGSRDIPENEFRVVL 120
Query 121 ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML 180
RRG HW SAVRVGNDIT+DDV ++DSASI +LVMDGLESIHHADPAAINAVNVP+EEML
Sbjct 121 VRRGSHWASAVRVGNDITIDDVAIADSASITSLVMDGLESIHHADPAAINAVNVPLEEML 180
Query 181 EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS 240
EATKSWQ++GFNVFSG DLRRMGISAATVAALGQALSDPAAE AVYARQYRDDAKGPSAS
Sbjct 181 EATKSWQDAGFNVFSGRDLRRMGISAATVAALGQALSDPAAEAAVYARQYRDDAKGPSAS 240
Query 241 VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
VLSLKD S GRIA+YQQARTAG G+AWLAICPATPQLVQ+G+KTVLDTLPYG+WKTHSRV
Sbjct 241 VLSLKDSSSGRIAIYQQARTAGLGDAWLAICPATPQLVQLGLKTVLDTLPYGDWKTHSRV 300
>gi|240173074|ref|ZP_04751732.1| hypothetical protein MkanA1_27426 [Mycobacterium kansasii ATCC
12478]
gi|296165330|ref|ZP_06847872.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899346|gb|EFG78810.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=306
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/296 (45%), Positives = 184/296 (63%), Gaps = 5/296 (1%)
Query 8 TDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDA- 66
+DITVN++G W+LQA+L I +APELR RPY + DWL HPG+AV+ +QGI DA
Sbjct 12 SDITVNLEGLWLLQAMLGIPQLAPELRGRPYGQPRNTDWLTAHPGLAVLVDQGIADEDAM 71
Query 67 VNEQVAARMKVLAAPDLEVVALLSRGKL--LYGVIDDENQPPGSRDIPDNEFRVVLARRG 124
V +AARMKVLAAPD+EV+ L+ RG + + V+ D+ P R IPD + RVVLARR
Sbjct 72 VRADIAARMKVLAAPDVEVILLVCRGAMNVVTPVVMDD--PTTWRAIPDEQLRVVLARRD 129
Query 125 QHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATK 184
W SAVR G+ +T+DD +D + LV + L+S+H +PA I+AVNVP+++M A
Sbjct 130 GRWASAVRAGSYVTIDDCPGTDQEWVQRLVFEALDSVHWVEPARISAVNVPLDDMRTAIT 189
Query 185 SWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSL 244
++G LR +G+ +A LG AL DP AE VYAR + D S +VL+L
Sbjct 190 LHAKAGSAAAKMAALRALGLRGGALAELGAALEDPQAEALVYARAHVDADTVWSETVLNL 249
Query 245 KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
+D + GR+ALY+ AGS + WLAI PA P + + TV D++ W +H R+
Sbjct 250 RDTASGRVALYRLNPPAGSQQEWLAIAPAGPAQLHHALTTVFDSVGVRAWDSHERM 305
>gi|169245927|gb|ACA50948.1| conserved protein [Mycobacterium marinum DL240490]
Length=314
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/327 (27%), Positives = 142/327 (44%), Gaps = 42/327 (12%)
Query 1 MDQQSTRT--DITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMRE 58
M Q T T ++ +G W+ AL ++ + P L+ RP S + + +HPG+ +
Sbjct 1 MSQPDTATAARLSTTSEGLWLTAALCNVAKLPPALKIRPIGSVQAT--ITDHPGIEALEN 58
Query 59 QGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPG----------- 107
GI V+ VAA + L PD+EV + +R ++ D PP
Sbjct 59 AGICGGGVVDPDVAAWVTTLGRPDIEVDVVATRREMPA---DRLAGPPAIFAAPDDAVAA 115
Query 108 --------SRDIPDNEFRVVLARRGQHWVSAVRV---GNDITVDDVTVS--DSASIAALV 154
++ P + V L RR WV+A R+ G+D DDV VS + IA +V
Sbjct 116 AEALAQWHAQRPP--QRVVALCRRDNTWVAAARLWSPGHD-GCDDVVVSPVNGDDIAQVV 172
Query 155 MDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQ 214
+D L ADPA + +N + A +WQ + + R+G+S +
Sbjct 173 IDALGP---ADPARFHGINSEAAALATALTTWQANPNIDIVTSLVERVGLSVPQARVVEA 229
Query 215 ALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGS-GEAWLAICPA 273
+ D A A+ A Q+ D + +++ D + GR+ + + T G G W + P
Sbjct 230 SADDGATRAAITATQFSIDGPALAPHAVTVADTTLGRVVV---STTVGPDGRKWTTLLPG 286
Query 274 TPQLVQVGVKTVLDTLPYG-EWKTHSR 299
+ ++ +L+TLP G W+TH R
Sbjct 287 SEAAIRTAAIELLETLPSGLNWRTHQR 313
>gi|296164028|ref|ZP_06846651.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900576|gb|EFG79959.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=313
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/315 (26%), Positives = 136/315 (44%), Gaps = 39/315 (12%)
Query 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNE 69
++ +G W+ AL + + P L+ RP + + + HPGM V+ GI V+
Sbjct 12 LSTTSEGLWLTAALCGVAQLPPALKIRPIGAVQAT--IAAHPGMEVLENAGICQGGEVDP 69
Query 70 QVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFR------------ 117
VA+ ++ L PD+E+ ++R ++ ++ PP P++
Sbjct 70 SVASWVRALGRPDVEIDVTITRPEIRPERLEG---PPAVFTAPEDAIEAAEALARWYAQR 126
Query 118 -----VVLARRGQHWVSAVRV---GNDITVDDVTVSD--SASIAALVMDGLESIHHADPA 167
V L RR WV+A R+ G D T D+V V+ IA +V+D +I ADPA
Sbjct 127 PPQRVVTLCRRDNAWVAAARLWRPGQD-TSDEVVVTPLGGTEIAHVVVD---TIGPADPA 182
Query 168 AINAVNVPMEEMLEATKSWQES-GFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVY 226
+ +N + +WQ + ++ +G L +G+S A L +A++D AV
Sbjct 183 QFHGINSEAAVLNTVLSAWQANPAIDIIAG--LVEVGLSVPQ-ARLVEAVADRGTTRAVI 239
Query 227 -ARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTV 285
A ++ + +++ D GR+ + G W + P + V +
Sbjct 240 GAAEFSISGPARAPMAVTVADTLIGRVVVSNS--VGPDGRQWTTLLPGADHAIHTAVVEL 297
Query 286 LDTLPYGE-WKTHSR 299
L+TLP G W TH R
Sbjct 298 LETLPSGRGWATHQR 312
>gi|119855162|ref|YP_935767.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
gi|119697880|gb|ABL94952.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
Length=288
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/281 (27%), Positives = 132/281 (47%), Gaps = 30/281 (10%)
Query 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPG-----------MAVMRE 58
+T V G W+LQALL + + LR +P++ + ++ + E +++++
Sbjct 3 LTTTVGGVWVLQALLGVESMPTALRLKPFIPSVHHELIVETTAGPVPIAETAEYLSLVQA 62
Query 59 QGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRV 118
I + AV++ V M VL PD + V + R Q + ++P E RV
Sbjct 63 GAISPSGAVDDPVRDWMTVLGRPDRQAVLTIRR---------PSGQAVHNGELPTVEERV 113
Query 119 VLARRGQHWVS-AVRVGNDITVDDVTVSDSASIAALVM--DGLESIHHADPAAINAVNVP 175
V+ R + W++ A R GN++ VD V +D ++ A +M + ++ A PA I+ VN+P
Sbjct 114 VVVCRYRRWLAMAARDGNEMVVDAVGETDDPAVQADLMCQTLMPALGVAAPADIDGVNIP 173
Query 176 MEEMLEATKSWQESGFNVFSGGDLRRMGISA--ATVAALGQALSDPAAEVAVYARQYRDD 233
+ M ++ G + + R+G+ A V A L D A VA+ D
Sbjct 174 ADLMQSTLEAAVPQGRDATIAA-MSRLGLQPQQAEVLAAATRLDDSAMAVAMVIDH--DI 230
Query 234 AKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPAT 274
A+ V+++ D GR+++ T+ G+ WL++ PAT
Sbjct 231 AQHVHPRVVTVADTEFGRVSITTS--TSADGKQWLSLWPAT 269
>gi|296165450|ref|ZP_06847986.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899190|gb|EFG78660.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=286
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/280 (26%), Positives = 118/280 (43%), Gaps = 30/280 (10%)
Query 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEH-----PGMAVMREQGIV-- 62
+ +V+ W+LQALL + + LR +PY+ +D++ E P + Q +V
Sbjct 4 LNASVECVWVLQALLGVESMPISLRLKPYIPAAHSDFIVETDAGKVPLTGTAQYQSLVQA 63
Query 63 ----VNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRV 118
N V++ V M VL + EVV + R +QP RV
Sbjct 64 GVIDANGRVDDAVRDWMTVLGRAEREVVLTIRR----------PDQPATHDSGATVHERV 113
Query 119 -VLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHAD--PAAINAVNVP 175
V+ R G++ A R G ++ + V +D + +M + D PA I +NVP
Sbjct 114 MVVCRYGRYLAMAARDGEEMVIGGVGETDEPTRQVELMCQMLVPAFGDHPPADIEGINVP 173
Query 176 MEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALS-DPAAEVAVYARQYRDDA 234
+ M A + + + G LRR+G+ V + A + D +A V + D
Sbjct 174 KDMMQMAIDAAGHTPEGM--AGALRRLGLGPWEVEVVQAAATLDQSAMAVVAVIDHCPDV 231
Query 235 KGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPAT 274
+ P VL++ D GR++ T G+ W++I P T
Sbjct 232 R-PHPRVLTVADTEYGRLSF--TTTTGADGKEWMSIWPTT 268
>gi|333989614|ref|YP_004522228.1| hypothetical protein JDM601_0974 [Mycobacterium sp. JDM601]
gi|333485582|gb|AEF34974.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=276
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/302 (27%), Positives = 124/302 (42%), Gaps = 41/302 (13%)
Query 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLN-EHPGMAVMREQGIV-VNDAV 67
+T +DG W+LQ L + VAPEL RP + L HP +RE G++ AV
Sbjct 2 LTTTIDGLWVLQVLAGVEVVAPELGLRPVMPRVETPQLALAHPVALELREHGVIDAAGAV 61
Query 68 NEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHW 127
+ V + VLA D +ALL R + D + E + VLAR Q W
Sbjct 62 DRTVVEWLTVLARRD---IALLLR-------VQDPRR---------VEAQAVLARFAQWW 102
Query 128 VSAVRVGNDITVDDVTVSDSASIAALVMDG-LESIHH-ADPAAINAVNVPMEEMLEATKS 185
V A R G+ + + S S A V+ +E + P V+V +L A S
Sbjct 103 VVAERCGDGVRIGGAGTSVSEGEAGAVLQAQIERLCGVVPPVQFRPVDVETTALLAAAGS 162
Query 186 WQESGFNVFSGGDLRRMGISAATVAALGQALSDP--AAEVAVYARQYRDDAKGPSAS--- 240
ES N + SA + L A +DP + + ++ A Q + P+ +
Sbjct 163 -PESVQNYLTSQPF-----SAEQLQIL-LAATDPTRSTQTSIAALQAGVETGRPTRTHIH 215
Query 241 --VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLP-YGEWKTH 297
+S+ D GR+ + + +G + + P T + V +L LP + EW +
Sbjct 216 PGAVSIIDIPAGRVVVEH---SVSAGRQQMLVVPGTASNIAAAVNKMLRRLPAHHEWHSS 272
Query 298 SR 299
R
Sbjct 273 RR 274
>gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
gi|296180926|gb|ADG97832.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
Length=274
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/243 (24%), Positives = 99/243 (41%), Gaps = 29/243 (11%)
Query 54 AVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPD 113
A + E+GI+ +AV+ ++ A ++ L PD E+ + RG+ +
Sbjct 54 AELNEKGILRGEAVHPELQAWLEALDHPDRELSGRVKRGESM------------------ 95
Query 114 NEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVN 173
R+ L RRG A+R G+++ + + S L L + N V+
Sbjct 96 --LRMALVRRGDVHALAIRYGDEVVIQNFEYDAQKSSGQLARAALVVLGEGVIPDFNRVS 153
Query 174 VPMEEMLEATKSWQESGFNVFSGGDLRRMGISA--ATVAALGQALSDPAAEVAVYARQYR 231
P + +++A + V++ L R+G S A V A A + +E VY R
Sbjct 154 APTQSIVDAMPRNVDLD-AVYTS--LLRVGASQKDAKVLATIMATVEVQSEFVVYERGDG 210
Query 232 DDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPY 291
A+G A +S+ D GR A GE W + P T + ++++ LP
Sbjct 211 PRARGKGA--VSVFDSPKGRFV--SSPSVASDGEIWSTMTPGTDHRISQAFNSLIELLPS 266
Query 292 GEW 294
+W
Sbjct 267 EQW 269
>gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC
BAA-974]
gi|316254758|gb|EFV14058.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC
BAA-974]
Length=274
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/256 (22%), Positives = 102/256 (40%), Gaps = 36/256 (14%)
Query 43 SNDW--LNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVID 100
S +W +NE + E+GI+ + V+ ++ ++ L P+ E+ + R + +
Sbjct 46 SKEWKLMNEE-----LNEKGILRGETVHPELQLWLEALDHPERELSGRIKRQETM----- 95
Query 101 DENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLES 160
R+ L RRG+ A+R G+++ + D S L L
Sbjct 96 ---------------LRMALVRRGRTHALAIRYGDEVVIQDFEYEAEKSAGQLAKPVLAV 140
Query 161 IHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISA--ATVAALGQALSD 218
+ N V+ P + ++++ + VF+ L R+G S A V A A +
Sbjct 141 LGEGVVPDFNRVSAPTQSIVDSMPRNIDLD-AVFT--SLLRVGASQKDAKVLATIMANVE 197
Query 219 PAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLV 278
+E V+ R+ +G A +S+ D GR AG GE W P T +
Sbjct 198 VQSEFVVHEREEGPRVRGKGA--VSIFDSPKGRFV--SSPSVAGDGEIWSTFTPGTDHRI 253
Query 279 QVGVKTVLDTLPYGEW 294
++++ LP +W
Sbjct 254 SQAFTSLIELLPSEKW 269
>gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_03472 [Mycobacterium kansasii ATCC
12478]
Length=283
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/191 (25%), Positives = 84/191 (44%), Gaps = 20/191 (10%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RD+ R V+ R+ V AVR G+ + + V+ +A +V L + ADPA+
Sbjct 102 RDVGGVMVRFVVCRKDDRHVIAVRNGDLLVLQ--LVAPQVGLAGMVTAVLGT---ADPAS 156
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ + E+ E T + Q L R G++ + +S+P + V + A
Sbjct 157 VEPLTGIASELAECTTAAQ-----------LTRYGLAPTAARIYTEIVSNPDSWVEIVAS 205
Query 229 Q-YRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLD 287
Q + + + + D + GR+ + SGE + + P TPQ +Q+ + +++
Sbjct 206 QRHPGGTTTHTKAAAGVLDSAHGRVVSLPRIV---SGELYGSFLPGTPQNLQLALDALVE 262
Query 288 TLPYGEWKTHS 298
LP G W H+
Sbjct 263 LLPAGSWLDHA 273
>gi|226363324|ref|YP_002781106.1| hypothetical protein ROP_39140 [Rhodococcus opacus B4]
gi|226241813|dbj|BAH52161.1| hypothetical protein [Rhodococcus opacus B4]
Length=264
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/162 (26%), Positives = 72/162 (45%), Gaps = 12/162 (7%)
Query 128 VSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQ 187
V A+R G++ V D A I A V+ L ++ +P + VN P ++ EA +
Sbjct 114 VLALRAGDEFVVQDA----GADIFAPVIGALGAV---EPLHVGVVNAPTVQLGEA---FD 163
Query 188 ESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDG 247
+ G G L +G+ A ALG A++ + Y D P +++ D
Sbjct 164 QGGDGKSLAGALAALGVPAVDATALGNAMAGCTTYAEIVGIVYGDGQYDPVGGPVTVFDT 223
Query 248 SGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTL 289
GRI + + G AW ++ P TPQ ++ ++++ D L
Sbjct 224 RAGRIV--GTSSVSAHGVAWSSLSPGTPQRLRQALESLADRL 263
>gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC
16433]
gi|343762321|dbj|GAA14074.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC
16433]
Length=268
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/180 (23%), Positives = 74/180 (42%), Gaps = 8/180 (4%)
Query 117 RVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPM 176
R+ LARRG V A R G+ + + V V+D ++A L+ + A + +VP
Sbjct 97 RICLARRGYEHVLAERAGDRLDLSVVEVADLDAVADLLRSRFDD---AAACEFTSFSVPT 153
Query 177 EEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKG 236
+++++ SG L +G + + A + + A D
Sbjct 154 DDLVDGLG---RSGSATEITDALYTLGAPLSDAVVISSAFASCRVRTEIVASANEDGRFS 210
Query 237 PSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKT 296
S+ L++ D + GRI + G W + P + + V+ +++TLP G W T
Sbjct 211 QSSGALAVFDTARGRI--VSSPSKSPDGRVWTTLSPGSGHRIAQAVRLLIETLPDGTWST 268
>gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 [Rhodococcus jostii RHA1]
gi|110820549|gb|ABG95833.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=284
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/173 (26%), Positives = 74/173 (43%), Gaps = 12/173 (6%)
Query 117 RVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPM 176
R+ ++R V A+R G+ V D A I A V+ L + ADP + VN P
Sbjct 103 RLCISRGETLSVLALRAGDTYVVQDA----GADIFAPVIGALGA---ADPMNVGVVNAPT 155
Query 177 EEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKG 236
++ E + G L +G++AA LG ++ + Y D
Sbjct 156 VQLGEV---FDHGGDGKSLAAALTALGVTAADATVLGNGMAACTTYAEIVGIVYGDGRYD 212
Query 237 PSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTL 289
P +++ D S GRI + + G AW ++ P TPQ ++ ++++ D L
Sbjct 213 PVGGPVTVFDTSAGRIV--GTSSVSAHGVAWSSLSPGTPQRLRQALESLTDRL 263
>gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
gi|262086865|gb|ACY22833.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
Length=275
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/187 (25%), Positives = 76/187 (41%), Gaps = 9/187 (4%)
Query 109 RDIPDNEFR-VVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPA 167
R I D FR + LAR G V AVR G I + V+ + + AL+ L P
Sbjct 95 RTIADAGFRRICLARSGNDHVLAVRDGARIELSVVSPTGVGELGALLRARLP---ERAPC 151
Query 168 AINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYA 227
+A++ P E+L+ + SG ++ L MG S + A + + + A
Sbjct 152 VFDAISHPAAELLDRLGRCR-SGLDMTDA--LHAMGASPGDAMVVSAAFASCRVQTEIVA 208
Query 228 RQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLD 287
+ S+ +++ D GRI + G W + P + + + +++
Sbjct 209 VAHDAGVLTQSSGAVAILDTDKGRI--VSSPSKSPDGRVWTTLSPGSGHRIAQAIGLLIE 266
Query 288 TLPYGEW 294
TLP G W
Sbjct 267 TLPDGRW 273
>gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221230839|ref|YP_002504255.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|13093792|emb|CAC32061.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933946|emb|CAR72629.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length=289
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/173 (26%), Positives = 75/173 (44%), Gaps = 8/173 (4%)
Query 128 VSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQ 187
V A+R IT + + D + ++ GL PA + ++PM + A + +
Sbjct 116 VVALRSAQLITFTAMDIDDPLRLVPILGAGL---AQRPPARFDEFSMPMRVGVRADERLR 172
Query 188 ESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDG 247
SG ++ D +GI + + S P + V + A RD + +S+ D
Sbjct 173 -SGTSLAEVADY--LGIPKSAQPVVESVFSGPRSYVEIVAGCRRDGKHATTEVGMSIVDT 229
Query 248 SGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV 300
+ GR+ L +R A GE P TP + VG++ + TLP G+W R+
Sbjct 230 TTGRV-LVNPSR-AFDGEWVSTFSPGTPFAIAVGIEQLTATLPEGQWFPGQRL 280
>gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 [Mycobacterium marinum M]
gi|183178738|gb|ACC43848.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=279
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/188 (25%), Positives = 81/188 (44%), Gaps = 22/188 (11%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RD+ R V+ R+G+ V AVR G+ + + V+ +A +V L + A+PA
Sbjct 102 RDVGGVMVRFVVCRKGERHVIAVRDGDMLVLQ--LVAPRVGLAGMVTAVLGT---AEPAN 156
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYA- 227
+ + E+ E T + Q L R G++ T + +++P + V + A
Sbjct 157 VEPLTGIASELGECTNAAQ-----------LTRYGLTPTTARLYTEIVTNPKSWVEIVAS 205
Query 228 -RQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVL 286
R A+ L G ++L +Q GE + + P T Q +Q + ++L
Sbjct 206 ERHPGGTTTHTKAAAGVLDSAHGRLVSLPRQV----GGELYGSFLPGTEQNLQRALDSLL 261
Query 287 DTLPYGEW 294
+ LP G W
Sbjct 262 ELLPSGSW 269
>gi|289760400|ref|ZP_06519778.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289707906|gb|EFD71922.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=239
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 61/257 (24%), Positives = 100/257 (39%), Gaps = 36/257 (14%)
Query 53 MAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIP 112
M ++ QG++ N VA +KV+ PD +D P S D
Sbjct 1 MGLLSPQGVI-----NPAVADWIKVVCFPDRW--------------LDLRYVGPASADGA 41
Query 113 DNEFRVVLARRGQHWVSAVRVGNDI---------TVDDVTVSDSASIAALVMDGLESIHH 163
R ++A R ++ + GN + T + + D ++ ++ GL H
Sbjct 42 CELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---H 98
Query 164 ADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEV 223
PA + ++P A + + V G + +GI A+ + S P + V
Sbjct 99 RPPARFDEFSLPTRVGARADERLRS---GVPLGEVVDYLGIPASARPVVESVFSGPRSYV 155
Query 224 AVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVK 283
+ A RD + LS+ D S GR+ L +R A GE P TP + V ++
Sbjct 156 EIVAGCNRDGRHTTTEVGLSIVDTSAGRV-LVSPSR-AFDGEWVSTFSPGTPFAIAVAIQ 213
Query 284 TVLDTLPYGEWKTHSRV 300
T+ LP G+W RV
Sbjct 214 TLTACLPDGQWFPGQRV 230
>gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418786|gb|EFD15987.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=294
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 61/257 (24%), Positives = 100/257 (39%), Gaps = 36/257 (14%)
Query 53 MAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIP 112
M ++ QG++ N VA +KV+ PD +D P S D
Sbjct 56 MGLLSPQGVI-----NPAVADWIKVVCFPDRW--------------LDLRYVGPASADGA 96
Query 113 DNEFRVVLARRGQHWVSAVRVGNDI---------TVDDVTVSDSASIAALVMDGLESIHH 163
R ++A R ++ + GN + T + + D ++ ++ GL H
Sbjct 97 CELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---H 153
Query 164 ADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEV 223
PA + ++P A + + V G + +GI A+ + S P + V
Sbjct 154 RPPARFDEFSLPTRVGARADERLRS---GVPLGEVVDYLGIPASARPVVESVFSGPRSYV 210
Query 224 AVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVK 283
+ A RD + LS+ D S GR+ L +R A GE P TP + V ++
Sbjct 211 EIVAGCNRDGRHTTTEVGLSIVDTSAGRV-LVSPSR-AFDGEWVSTFSPGTPFAIAVAIQ 268
Query 284 TVLDTLPYGEWKTHSRV 300
T+ LP G+W RV
Sbjct 269 TLTACLPDGQWFPGQRV 285
>gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycobacterium tuberculosis H37Rv]
gi|15839675|ref|NP_334712.1| hypothetical protein MT0302 [Mycobacterium tuberculosis CDC1551]
gi|31791468|ref|NP_853961.1| hypothetical protein Mb0297 [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=295
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/257 (24%), Positives = 100/257 (39%), Gaps = 36/257 (14%)
Query 53 MAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIP 112
M ++ QG++ N VA +KV+ PD +D P S D
Sbjct 57 MGLLSPQGVI-----NPAVADWIKVVCFPDRW--------------LDLRYVGPASADGA 97
Query 113 DNEFRVVLARRGQHWVSAVRVGNDI---------TVDDVTVSDSASIAALVMDGLESIHH 163
R ++A R ++ + GN + T + + D ++ ++ GL H
Sbjct 98 CELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---H 154
Query 164 ADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEV 223
PA + ++P A + + V G + +GI A+ + S P + V
Sbjct 155 RPPARFDEFSLPTRVGARADERLRS---GVPLGEVVDYLGIPASARPVVESVFSGPRSYV 211
Query 224 AVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVK 283
+ A RD + LS+ D S GR+ L +R A GE P TP + V ++
Sbjct 212 EIVAGCNRDGRHTTTEVGLSIVDTSAGRV-LVSPSR-AFDGEWVSTFSPGTPFAIAVAIQ 269
Query 284 TVLDTLPYGEWKTHSRV 300
T+ LP G+W RV
Sbjct 270 TLTACLPDGQWFPGQRV 286
>gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocardia farcinica IFM 10152]
gi|54014296|dbj|BAD55666.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 59/235 (26%), Positives = 99/235 (43%), Gaps = 40/235 (17%)
Query 67 VNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQH 126
V+ ++A M VLA PD E+VA + G + P R+ LA RG+
Sbjct 60 VDPELADAMYVLAQPDRELVARVYPG---------DGAP----------TRLCLALRGER 100
Query 127 WVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEM---LEAT 183
A+R G+DI ++ +S S + L ++ A+PA + + P E+ L A
Sbjct 101 HALALRRGDDIRIEPAWSDESGSALVAAL--LRALGPAEPADVAPFSAPAAELAERLSAA 158
Query 184 KSWQESGFNVFSGG----DLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSA 239
++ + V++ G D R G++ + A AE+ YA + P A
Sbjct 159 RTSADFTDAVYALGVAERDAPRYGLAFESCRAY--------AEIVAYAHVDGVTTRPPCA 210
Query 240 SVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEW 294
+V+ + GRI + A + W + P T V + +++TLP G W
Sbjct 211 AVV--YETGRGRIVVAPG--IAPDQQVWSTVTPGTDHRVAQAISGLIETLPGGRW 261
>gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
gi|145213412|gb|ABP42816.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
Length=290
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/179 (27%), Positives = 76/179 (43%), Gaps = 8/179 (4%)
Query 116 FRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVP 175
R VLAR G V A+R G IT+ ++ + ++ +V GL PA + ++P
Sbjct 94 LRGVLARDGAGTVIALRSGGLITLTELDIDHPEALVPVVTAGLSG---RAPARFDGFSLP 150
Query 176 MEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAK 235
+A + ++ GG L +GI + + A D V + A Q+RD +
Sbjct 151 ARVGAKADEQIRK---GAAVGGLLDYLGIPPSARPVVVAAFEDSRTYVEIVAGQHRDGHR 207
Query 236 GPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEW 294
+ +S+ D GR+ L A+ A GE P P + V+ + LP G W
Sbjct 208 VSTDVGVSVVDTVLGRV-LVSPAK-ARDGEWISTFAPGDPVAIAAAVERLTAALPDGPW 264
>gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
gi|315260407|gb|ADT97148.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
Length=290
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/179 (26%), Positives = 74/179 (42%), Gaps = 8/179 (4%)
Query 116 FRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVP 175
R VLAR G V A+R G IT+ ++ + ++ +V GL PA + ++P
Sbjct 94 LRGVLARDGAGTVIALRSGGLITLTELDIDHPEALVPVVTAGLSG---RAPARFDGFSLP 150
Query 176 MEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAK 235
+A + ++ GG L +GI + + A D V + A Q+RD +
Sbjct 151 ARVGAKADEQIRK---GAAVGGLLDYLGIPPSARPVVVAAFEDSRTYVEIVAGQHRDGHR 207
Query 236 GPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEW 294
+ +S+ D GR+ + A GE P P + V+ + LP G W
Sbjct 208 VSTDVGVSVVDTVLGRVLVCPA--KARDGEWISTFAPGDPVAIAAAVERLTAALPDGPW 264
>gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837 [Mycobacterium tuberculosis
210]
Length=268
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/194 (26%), Positives = 78/194 (41%), Gaps = 26/194 (13%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RDI R V+ RRG V A R G+ + + V+ +A +V L A+PA
Sbjct 87 RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVTAVLGP---AEPAN 141
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ + E+ E T + Q L + GI+ A+ + + +P V + A
Sbjct 142 VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS 190
Query 229 QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT 284
Q +A VL K G L R G G+ + + P T Q ++ +
Sbjct 191 QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG 244
Query 285 VLDTLPYGEWKTHS 298
+L+ LP G W H+
Sbjct 245 LLELLPAGAWLDHT 258
>gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 [Mycobacterium tuberculosis SUMu001]
gi|308369263|ref|ZP_07417096.2| hypothetical protein TMBG_02406 [Mycobacterium tuberculosis SUMu002]
gi|308371485|ref|ZP_07425109.2| hypothetical protein TMCG_01376 [Mycobacterium tuberculosis SUMu003]
21 more sequence titles
Length=285
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 48/194 (25%), Positives = 78/194 (41%), Gaps = 26/194 (13%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RDI R V+ RRG V A R G+ + + V+ +A +V + A+PA
Sbjct 104 RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN 158
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ + E+ E T + Q L + GI+ A+ + + +P V + A
Sbjct 159 VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS 207
Query 229 QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT 284
Q +A VL K G L R G G+ + + P T Q ++ +
Sbjct 208 QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG 261
Query 285 VLDTLPYGEWKTHS 298
+L+ LP G W H+
Sbjct 262 LLELLPAGAWLDHT 275
>gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881 [Mycobacterium canettii CIPT
140010059]
gi|340007028|emb|CCC46219.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=283
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/194 (25%), Positives = 78/194 (41%), Gaps = 26/194 (13%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RDI R V+ RRG V A R G+ + + V+ +A +V + A+PA
Sbjct 102 RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN 156
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ + E+ E T + Q L + GI+ A+ + + +P V + A
Sbjct 157 VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS 205
Query 229 QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT 284
Q +A VL K G L R G G+ + + P T Q ++ +
Sbjct 206 QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG 259
Query 285 VLDTLPYGEWKTHS 298
+L+ LP G W H+
Sbjct 260 LLELLPAGAWLDHT 273
>gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycobacterium tuberculosis H37Rv]
gi|31795040|ref|NP_857533.1| hypothetical protein Mb3896 [Mycobacterium bovis AF2122/97]
gi|121639784|ref|YP_980008.1| hypothetical protein BCG_3929 [Mycobacterium bovis BCG str. Pasteur
1173P2]
50 more sequence titles
Length=283
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/194 (25%), Positives = 78/194 (41%), Gaps = 26/194 (13%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RDI R V+ RRG V A R G+ + + V+ +A +V + A+PA
Sbjct 102 RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN 156
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ + E+ E T + Q L + GI+ A+ + + +P V + A
Sbjct 157 VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS 205
Query 229 QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT 284
Q +A VL K G L R G G+ + + P T Q ++ +
Sbjct 206 QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG 259
Query 285 VLDTLPYGEWKTHS 298
+L+ LP G W H+
Sbjct 260 LLELLPAGAWLDHT 273
>gi|270293185|ref|ZP_06199396.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
sp. M143]
gi|270279164|gb|EFA25010.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
sp. M143]
Length=744
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/98 (29%), Positives = 47/98 (48%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ME+ +E + E G N+ GD G
Sbjct 45 IQDEESLKKFLEPSLEDLH--DPYLLH----DMEKAVERIRQAIEEGENILIYGDYDADG 98
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 99 MTSASI--MKESLEQLGAECRVYLPNRFTDGYGPNASV 134
>gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298497134|gb|EFI32428.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=283
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/194 (25%), Positives = 77/194 (40%), Gaps = 26/194 (13%)
Query 109 RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA 168
RDI R V+ RRG V A R G+ + + V+ +A +V + A+PA
Sbjct 102 RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN 156
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ + E+ E T + Q L + GI+ A+ + + +P V A
Sbjct 157 VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVETVAS 205
Query 229 QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT 284
Q +A VL K G L R G G+ + + P T Q ++ +
Sbjct 206 QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG 259
Query 285 VLDTLPYGEWKTHS 298
+L+ LP G W H+
Sbjct 260 LLELLPAGAWLDHT 273
>gi|342860124|ref|ZP_08716776.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT
3035]
gi|342132502|gb|EGT85731.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT
3035]
Length=276
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 70/310 (23%), Positives = 126/310 (41%), Gaps = 55/310 (17%)
Query 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVVNDA-- 66
+T VDG W+LQAL + PEL RP + D+ + HP A +++A
Sbjct 2 LTTTVDGLWVLQALTGVEQTCPELGLRPMLPRLDTPERAKGHP-AAAELVAAGALDEAGN 60
Query 67 VNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNE-FRVVLARRGQ 125
V+ + + VL D+ ++A++ +P E R + R
Sbjct 61 VDPMIREWLTVLLRRDIALLAMIG--------------------VPGREPTRASICRFAT 100
Query 126 HWVSAVRVGNDITVDDV-TVSDSASIAALVMDGLESIHH-ADPAAINAVNVPMEEMLEA- 182
WV R G+ + + T + AS + L++ +E + A+ A + V + E++L +
Sbjct 101 WWVVLERHGDMVRLYPAGTAGNEASASDLLVGQIERLCGVAEAAPLKPVTLDTEQLLNSV 160
Query 183 --TKSWQESGFNVFSGGDLRRMGISAATVAALGQAL---------SDPAAEVAVYARQYR 231
T S + D +M ++AA A A D A +AV
Sbjct 161 RDTASLRSFLLEQRLDADQLQMVLTAADPARSAHANIVGLQAGVGPDEQARIAV------ 214
Query 232 DDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPY 291
S +S+ D GRI + ++ T+G + + + P + + ++ ++ LP
Sbjct 215 ------GESTVSIVDTPAGRICI--ESVTSGQRQ-YQILSPGSRTDIGGAIQRLIRRLPA 265
Query 292 G-EWKTHSRV 300
G EW ++ RV
Sbjct 266 GDEWHSYRRV 275
>gi|340723971|ref|XP_003400360.1| PREDICTED: LOW QUALITY PROTEIN: DEP domain-containing protein
5-like [Bombus terrestris]
Length=1553
Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 40/151 (27%), Positives = 62/151 (42%), Gaps = 21/151 (13%)
Query 31 PELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLS 90
P L + +VS D+ WLN H V E I + +N + ++ A+ D +L
Sbjct 1121 PSLPSQTFVSADAVQWLNNHIEGGVTVESAI---NIMNGMIQDKLICHASGDFSKPFIL- 1176
Query 91 RGKLLYGVIDD-ENQPPGSRDIP-------DNEFRVVLARRGQHWVSAVRVGN------- 135
G LY ++ D ENQ G P +NE+ V R + W G+
Sbjct 1177 -GFYLYHIVQDKENQRAGDYFSPLGDLQSFENEWVEVEIRAPKGWCEPSSPGSFPLMSSP 1235
Query 136 -DITVDDVTVSDSASIAALVMDGLESIHHAD 165
I D T+ D +++A + D L+ AD
Sbjct 1236 MTIPSCDTTIVDESNVAPFLKDELDISDMAD 1266
>gi|328784122|ref|XP_003250400.1| PREDICTED: DEP domain-containing protein 5-like [Apis mellifera]
Length=1544
Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 38/150 (26%), Positives = 65/150 (44%), Gaps = 21/150 (14%)
Query 31 PELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAV---NEQVAARMKVLAAPDLEVVA 87
P L + +VS D+ WLN H E G+ V +A+ N + ++ A+ D
Sbjct 1119 PSLPSQTFVSADAVQWLNNHI------EGGVTVENAINIMNGMIQDKLICHASGDFSKPF 1172
Query 88 LLSRGKLLYGVIDD-ENQPPGSRDIP-------DNEFRVVLARRGQHWVSAVRVGN--DI 137
+L G LY ++ D ENQ G P +NE+ V + + W G+ +
Sbjct 1173 IL--GFYLYHIVQDKENQRAGDYFSPLGDLQSFENEWVEVEIKAPKGWCEPPSSGSFPPM 1230
Query 138 TVDDVTVSDSASIAALVMDGLESIHHADPA 167
T+ + D +++ + + D L+ AD A
Sbjct 1231 TISNCDTVDESNVVSFLKDDLDISDIADEA 1260
>gi|54022099|ref|YP_116341.1| hypothetical protein nfa1350 [Nocardia farcinica IFM 10152]
gi|54013607|dbj|BAD54977.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=266
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/185 (22%), Positives = 78/185 (43%), Gaps = 22/185 (11%)
Query 126 HWVSAVRVGNDITVDDVTVSDSASIAALVMDGLES-----------------IHHADPAA 168
HWV A+R+ + V + ++ +A + + G +S + A+P
Sbjct 77 HWVLALRLVVEGQVSRMCLAQGDDMAVVALRGPQSYVVDEVDEDLPGPLVAALGSAEPLE 136
Query 169 INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR 228
+ ++N E + + ++G + + L ++ A V L AL + + +
Sbjct 137 LESMNAQTELL---APIFGDAGDSAATANRLAKVCQPARDVQTLASALVEIRSHTQISGV 193
Query 229 QYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDT 288
Y D + + S +++ D GGRI L A A G W +I T ++ ++ ++D+
Sbjct 194 VYGDGIRDIADSHVAVFDTRGGRIVL--TASVADDGTKWTSISSGTTARLRTAIQDLIDS 251
Query 289 LPYGE 293
LP E
Sbjct 252 LPERE 256
>gi|289168420|ref|YP_003446689.1| single-stranded DNA-specific exonuclease [Streptococcus mitis
B6]
gi|288907987|emb|CBJ22827.1| single-stranded DNA-specific exonuclease [Streptococcus mitis
B6]
Length=788
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 89 IQDQESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILVYGDYDADG 142
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 143 MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV 178
>gi|343388804|gb|EGV01389.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
oralis SK313]
Length=758
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 60 IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILVYGDYDADG 113
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 114 MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV 149
>gi|342831685|gb|EGU65996.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
mitis bv. 2 str. SK95]
Length=740
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 41 IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILVYGDYDADG 94
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 95 MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV 130
>gi|342163306|ref|YP_004767945.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
pseudopneumoniae IS7493]
gi|341933188|gb|AEL10085.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
pseudopneumoniae IS7493]
Length=740
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 47/98 (48%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 41 IQDQESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG 94
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ ++L AE VY D GP+ASV
Sbjct 95 MTSASIVK--ESLEQLGAECRVYLPNRFTDGYGPNASV 130
>gi|334274112|gb|EGL92440.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
oralis SK255]
Length=759
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 60 IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG 113
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 114 MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV 149
>gi|194290140|ref|YP_002006047.1| hypothetical protein RALTA_A2044 [Cupriavidus taiwanensis LMG
19424]
gi|193223975|emb|CAQ69984.1| Conserved hypothetical protein; putative membrane protein [Cupriavidus
taiwanensis LMG 19424]
Length=368
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/88 (33%), Positives = 41/88 (47%), Gaps = 14/88 (15%)
Query 182 ATKSWQ----ESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGP 237
AT W E F +F+G L + A V A G+ +S+P A+ AV A+ R A GP
Sbjct 200 ATGHWHWAVSERMFGIFTGATLHEV----AQVIAAGKMISEPTADAAVVAKMVRVLALGP 255
Query 238 SASVLSLKDGSGGRIALYQQARTAGSGE 265
V++L G QA +G+G
Sbjct 256 LLLVMALWPQGG------SQAGASGAGT 277
>gi|315612726|ref|ZP_07887637.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
sanguinis ATCC 49296]
gi|315314836|gb|EFU62877.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
sanguinis ATCC 49296]
Length=757
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 60 IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG 113
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 114 MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV 149
>gi|322374747|ref|ZP_08049261.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
sp. C300]
gi|321280247|gb|EFX57286.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
sp. C300]
Length=743
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)
Query 144 VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG 203
+ D S+ + LE +H DP ++ ++ +E + +A E G N+ GD G
Sbjct 45 IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG 98
Query 204 ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV 241
+++A++ + ++L AE VY D GP+ASV
Sbjct 99 MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV 134
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 505145727648
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40