BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1794

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608931|ref|NP_216310.1|  hypothetical protein Rv1794 [Mycoba...   611    4e-173
gi|240172854|ref|ZP_04751513.1|  hypothetical protein MkanA1_2631...   597    7e-169
gi|183982683|ref|YP_001850974.1|  hypothetical protein MMAR_2676 ...   596    2e-168
gi|118618464|ref|YP_906796.1|  hypothetical protein MUL_3081 [Myc...   595    3e-168
gi|296164782|ref|ZP_06847343.1|  conserved hypothetical protein [...   587    1e-165
gi|254820295|ref|ZP_05225296.1|  hypothetical protein MintA_10221...   585    3e-165
gi|342861302|ref|ZP_08717950.1|  hypothetical protein MCOL_20561 ...   583    8e-165
gi|41407607|ref|NP_960443.1|  hypothetical protein MAP1509 [Mycob...   581    6e-164
gi|336457558|gb|EGO36563.1|  hypothetical protein MAPs_21140 [Myc...   576    1e-162
gi|333990537|ref|YP_004523151.1|  hypothetical protein JDM601_189...   556    1e-156
gi|15827810|ref|NP_302073.1|  hypothetical protein ML1540 [Mycoba...   554    7e-156
gi|240173074|ref|ZP_04751732.1|  hypothetical protein MkanA1_2742...   231    1e-58 
gi|169245927|gb|ACA50948.1|  conserved protein [Mycobacterium mar...  87.8    2e-15 
gi|296164028|ref|ZP_06846651.1|  conserved protein [Mycobacterium...  80.9    2e-13 
gi|119855162|ref|YP_935767.1|  hypothetical protein Mkms_5777 [My...  62.4    8e-08 
gi|296165450|ref|ZP_06847986.1|  conserved hypothetical protein [...  59.3    7e-07 
gi|333989614|ref|YP_004522228.1|  hypothetical protein JDM601_097...  55.8    8e-06 
gi|296393779|ref|YP_003658663.1|  hypothetical protein Srot_1368 ...  50.8    3e-04 
gi|317506950|ref|ZP_07964720.1|  hypothetical protein HMPREF9336_...  48.1    0.002 
gi|240168345|ref|ZP_04747004.1|  hypothetical protein MkanA1_0347...  47.4    0.003 
gi|226363324|ref|YP_002781106.1|  hypothetical protein ROP_39140 ...  47.0    0.004 
gi|343927680|ref|ZP_08767148.1|  hypothetical protein GOALK_097_0...  46.6    0.005 
gi|111021019|ref|YP_703991.1|  hypothetical protein RHA1_ro04036 ...  46.2    0.006 
gi|262203518|ref|YP_003274726.1|  hypothetical protein Gbro_3645 ...  44.7    0.016 
gi|15828362|ref|NP_302625.1|  DNA-binding protein [Mycobacterium ...  43.9    0.032 
gi|183985412|ref|YP_001853703.1|  hypothetical protein MMAR_5441 ...  43.5    0.036 
gi|289760400|ref|ZP_06519778.1|  conserved hypothetical protein [...  43.1    0.053 
gi|289445828|ref|ZP_06435572.1|  conserved hypothetical protein [...  42.7    0.061 
gi|15607430|ref|NP_214803.1|  hypothetical protein Rv0289 [Mycoba...  42.7    0.064 
gi|54022788|ref|YP_117030.1|  hypothetical protein nfa8210 [Nocar...  42.4    0.093 
gi|145220926|ref|YP_001131604.1|  putative DNA-binding protein [M...  41.2    0.23  
gi|315442104|ref|YP_004074983.1|  hypothetical protein Mspyr1_043...  40.4    0.33  
gi|294995553|ref|ZP_06801244.1|  hypothetical protein Mtub2_13837...  39.7    0.53  
gi|308232596|ref|ZP_07416567.2|  hypothetical protein TMAG_00613 ...  39.7    0.53  
gi|340628838|ref|YP_004747290.1|  hypothetical protein MCAN_38881...  39.7    0.57  
gi|15611002|ref|NP_218383.1|  hypothetical protein Rv3866 [Mycoba...  39.7    0.58  
gi|270293185|ref|ZP_06199396.1|  single-stranded-DNA-specific exo...  38.9    1.0   
gi|298527340|ref|ZP_07014749.1|  conserved hypothetical protein [...  38.5    1.4   
gi|342860124|ref|ZP_08716776.1|  hypothetical protein MCOL_14635 ...  38.1    1.8   
gi|340723971|ref|XP_003400360.1|  PREDICTED: LOW QUALITY PROTEIN:...  38.1    1.9   
gi|328784122|ref|XP_003250400.1|  PREDICTED: DEP domain-containin...  37.7    2.3   
gi|54022099|ref|YP_116341.1|  hypothetical protein nfa1350 [Nocar...  37.0    3.6   
gi|289168420|ref|YP_003446689.1|  single-stranded DNA-specific ex...  37.0    3.6   
gi|343388804|gb|EGV01389.1|  single-stranded-DNA-specific exonucl...  37.0    4.0   
gi|342831685|gb|EGU65996.1|  single-stranded-DNA-specific exonucl...  37.0    4.3   
gi|342163306|ref|YP_004767945.1|  single-stranded-DNA-specific ex...  37.0    4.3   
gi|334274112|gb|EGL92440.1|  single-stranded-DNA-specific exonucl...  36.6    4.4   
gi|194290140|ref|YP_002006047.1|  hypothetical protein RALTA_A204...  36.6    4.4   
gi|315612726|ref|ZP_07887637.1|  single-stranded-DNA-specific exo...  36.6    4.4   
gi|322374747|ref|ZP_08049261.1|  single-stranded-DNA-specific exo...  36.6    4.4   


>gi|15608931|ref|NP_216310.1| hypothetical protein Rv1794 [Mycobacterium tuberculosis H37Rv]
 gi|15841263|ref|NP_336300.1| hypothetical protein MT1843 [Mycobacterium tuberculosis CDC1551]
 gi|31792982|ref|NP_855475.1| hypothetical protein Mb1822 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=300

 Score =  611 bits (1576),  Expect = 4e-173, Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL
Sbjct  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML
Sbjct  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|240172854|ref|ZP_04751513.1| hypothetical protein MkanA1_26312 [Mycobacterium kansasii ATCC 
12478]
Length=300

 Score =  597 bits (1539),  Expect = 7e-169, Method: Compositional matrix adjust.
 Identities = 290/300 (97%), Positives = 298/300 (99%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTD+NDWLNEHPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDNNDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IVV D VNEQVAARM+VLAAPDLEVVALLSRGKLLYGV+DDENQPPGSRDIPDNEFRVVL
Sbjct  61   IVVGDTVNEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDDENQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVGNDITVDDV+V+DSASIAALV+DGLESIHHADPAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGNDITVDDVSVTDSASIAALVIDGLESIHHADPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISA+TVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISASTVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|183982683|ref|YP_001850974.1| hypothetical protein MMAR_2676 [Mycobacterium marinum M]
 gi|183176009|gb|ACC41119.1| conserved protein [Mycobacterium marinum M]
Length=300

 Score =  596 bits (1536),  Expect = 2e-168, Method: Compositional matrix adjust.
 Identities = 290/300 (97%), Positives = 298/300 (99%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IVV D VNEQVAARM+VLAAPDLEVVALLSRGKLLYGV+D+E+QPPGSRDIPDNEFRVVL
Sbjct  61   IVVGDTVNEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVGNDITVDDV+VSDSASIAALV+DGLESIHHADPAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGNDITVDDVSVSDSASIAALVIDGLESIHHADPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISA+TVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISASTVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|118618464|ref|YP_906796.1| hypothetical protein MUL_3081 [Mycobacterium ulcerans Agy99]
 gi|118570574|gb|ABL05325.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=300

 Score =  595 bits (1533),  Expect = 3e-168, Method: Compositional matrix adjust.
 Identities = 289/300 (97%), Positives = 298/300 (99%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IVV D +NEQVAARM+VLAAPDLEVVALLSRGKLLYGV+D+E+QPPGSRDIPDNEFRVVL
Sbjct  61   IVVGDTLNEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVGNDITVDDV+VSDSASIAALV+DGLESIHHADPAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGNDITVDDVSVSDSASIAALVIDGLESIHHADPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISA+TVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISASTVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|296164782|ref|ZP_06847343.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899859|gb|EFG79304.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=300

 Score =  587 bits (1512),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 283/300 (95%), Positives = 294/300 (98%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQ+ RTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct  1    MDQQTARTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IV ND VNE VAARM+VLAAPDLEV+ALLSRGKLLYGV+DDENQPPGSRDIPDNEFRVVL
Sbjct  61   IVENDQVNEHVAARMRVLAAPDLEVIALLSRGKLLYGVVDDENQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVG+DITVDDV ++DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGSDITVDDVAIADSASIASLVLDALESIHHAEPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|254820295|ref|ZP_05225296.1| hypothetical protein MintA_10221 [Mycobacterium intracellulare 
ATCC 13950]
Length=300

 Score =  585 bits (1508),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 285/300 (95%), Positives = 293/300 (98%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IV ND VNE VAARMKVLAAPDLEVVALLSRGKL YGV+DDENQPPGSRDIPDNEFRVVL
Sbjct  61   IVENDEVNEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|342861302|ref|ZP_08717950.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT 
3035]
 gi|342131202|gb|EGT84483.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT 
3035]
Length=300

 Score =  583 bits (1504),  Expect = 8e-165, Method: Compositional matrix adjust.
 Identities = 284/300 (95%), Positives = 293/300 (98%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDS+DWLNEHPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSSDWLNEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IV ND VNE VAARMKVLAAPDLEVVALLSRGKL YGV+DDENQPPGSRDIPDNEFRVVL
Sbjct  61   IVENDQVNEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|41407607|ref|NP_960443.1| hypothetical protein MAP1509 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118462612|ref|YP_882106.1| hypothetical protein MAV_2920 [Mycobacterium avium 104]
 gi|254775396|ref|ZP_05216912.1| hypothetical protein MaviaA2_12106 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41395960|gb|AAS03826.1| hypothetical protein MAP_1509 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118163899|gb|ABK64796.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=300

 Score =  581 bits (1497),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 282/300 (94%), Positives = 293/300 (98%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLN+HPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNDHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IV  D VNEQVAARM+VLAAPDLEV+ALLSRGKL YGVIDD+NQPPGSRDIPDNEFRVVL
Sbjct  61   IVEGDQVNEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|336457558|gb|EGO36563.1| hypothetical protein MAPs_21140 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=300

 Score =  576 bits (1485),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 281/300 (94%), Positives = 292/300 (98%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSND LN+HPGMAVMREQG
Sbjct  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDRLNDHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IV  D VNEQVAARM+VLAAPDLEV+ALLSRGKL YGVIDD+NQPPGSRDIPDNEFRVVL
Sbjct  61   IVEGDQVNEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
            ARRGQHWVSAVRVG +ITVDDV V+DSASIA+LV+D LESIHHA+PAAINAVNVP+EEML
Sbjct  121  ARRGQHWVSAVRVGGEITVDDVAVADSASIASLVIDALESIHHAEPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQY+DDAKGPSAS
Sbjct  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYQDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
Sbjct  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300


>gi|333990537|ref|YP_004523151.1| hypothetical protein JDM601_1897 [Mycobacterium sp. JDM601]
 gi|333486505|gb|AEF35897.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=299

 Score =  556 bits (1433),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 268/296 (91%), Positives = 286/296 (97%), Gaps = 0/296 (0%)

Query  5    STRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVN  64
            STRTDITVNV+GFW+LQALLDIRHVAPELRCRPYVSTDSNDWL+EHPGMAVMREQGIVV+
Sbjct  4    STRTDITVNVEGFWLLQALLDIRHVAPELRCRPYVSTDSNDWLSEHPGMAVMREQGIVVD  63

Query  65   DAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRG  124
            D VNE VAARMKVLAAPDLEVVALLS GKL YGVIDDE+QPPG+RDIPDNEFRV+LARRG
Sbjct  64   DQVNETVAARMKVLAAPDLEVVALLSLGKLRYGVIDDEDQPPGTRDIPDNEFRVLLARRG  123

Query  125  QHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATK  184
            +HWVSAVRVG DITVDDV+V+D+ASIAALV+DG+ESIHHADPA I AVNVPMEEMLEAT+
Sbjct  124  EHWVSAVRVGTDITVDDVSVTDAASIAALVIDGMESIHHADPAQITAVNVPMEEMLEATQ  183

Query  185  SWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSL  244
            SWQ+SGFN+F+GGDLRRMGISAATVAALGQALS+PAAE AVYARQYRDDAKGPSASVLSL
Sbjct  184  SWQDSGFNIFTGGDLRRMGISAATVAALGQALSEPAAEAAVYARQYRDDAKGPSASVLSL  243

Query  245  KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYG WKTH RV
Sbjct  244  KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGAWKTHRRV  299


>gi|15827810|ref|NP_302073.1| hypothetical protein ML1540 [Mycobacterium leprae TN]
 gi|221230287|ref|YP_002503703.1| hypothetical protein MLBr_01540 [Mycobacterium leprae Br4923]
 gi|4455687|emb|CAB36587.1| hypothetical protein MLCB596.31 [Mycobacterium leprae]
 gi|13093362|emb|CAC30491.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933394|emb|CAR71635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=300

 Score =  554 bits (1427),  Expect = 7e-156, Method: Compositional matrix adjust.
 Identities = 264/300 (88%), Positives = 283/300 (95%), Gaps = 0/300 (0%)

Query  1    MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG  60
            MD QSTRTDITVNVDGFW+LQALLDIRHVAPELRCRP+VSTDSNDWL+EHPGMAVMREQG
Sbjct  1    MDHQSTRTDITVNVDGFWLLQALLDIRHVAPELRCRPFVSTDSNDWLHEHPGMAVMREQG  60

Query  61   IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL  120
            IVVN  VNE VA RM+V AAPDLEVVALLSRGKLLYG ++DENQPPGSRDIP+NEFRVVL
Sbjct  61   IVVNGNVNEHVATRMRVFAAPDLEVVALLSRGKLLYGAVNDENQPPGSRDIPENEFRVVL  120

Query  121  ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML  180
             RRG HW SAVRVGNDIT+DDV ++DSASI +LVMDGLESIHHADPAAINAVNVP+EEML
Sbjct  121  VRRGSHWASAVRVGNDITIDDVAIADSASITSLVMDGLESIHHADPAAINAVNVPLEEML  180

Query  181  EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS  240
            EATKSWQ++GFNVFSG DLRRMGISAATVAALGQALSDPAAE AVYARQYRDDAKGPSAS
Sbjct  181  EATKSWQDAGFNVFSGRDLRRMGISAATVAALGQALSDPAAEAAVYARQYRDDAKGPSAS  240

Query  241  VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            VLSLKD S GRIA+YQQARTAG G+AWLAICPATPQLVQ+G+KTVLDTLPYG+WKTHSRV
Sbjct  241  VLSLKDSSSGRIAIYQQARTAGLGDAWLAICPATPQLVQLGLKTVLDTLPYGDWKTHSRV  300


>gi|240173074|ref|ZP_04751732.1| hypothetical protein MkanA1_27426 [Mycobacterium kansasii ATCC 
12478]
 gi|296165330|ref|ZP_06847872.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899346|gb|EFG78810.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=306

 Score =  231 bits (589),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 133/296 (45%), Positives = 184/296 (63%), Gaps = 5/296 (1%)

Query  8    TDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDA-  66
            +DITVN++G W+LQA+L I  +APELR RPY    + DWL  HPG+AV+ +QGI   DA 
Sbjct  12   SDITVNLEGLWLLQAMLGIPQLAPELRGRPYGQPRNTDWLTAHPGLAVLVDQGIADEDAM  71

Query  67   VNEQVAARMKVLAAPDLEVVALLSRGKL--LYGVIDDENQPPGSRDIPDNEFRVVLARRG  124
            V   +AARMKVLAAPD+EV+ L+ RG +  +  V+ D+  P   R IPD + RVVLARR 
Sbjct  72   VRADIAARMKVLAAPDVEVILLVCRGAMNVVTPVVMDD--PTTWRAIPDEQLRVVLARRD  129

Query  125  QHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATK  184
              W SAVR G+ +T+DD   +D   +  LV + L+S+H  +PA I+AVNVP+++M  A  
Sbjct  130  GRWASAVRAGSYVTIDDCPGTDQEWVQRLVFEALDSVHWVEPARISAVNVPLDDMRTAIT  189

Query  185  SWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSL  244
               ++G        LR +G+    +A LG AL DP AE  VYAR + D     S +VL+L
Sbjct  190  LHAKAGSAAAKMAALRALGLRGGALAELGAALEDPQAEALVYARAHVDADTVWSETVLNL  249

Query  245  KDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            +D + GR+ALY+    AGS + WLAI PA P  +   + TV D++    W +H R+
Sbjct  250  RDTASGRVALYRLNPPAGSQQEWLAIAPAGPAQLHHALTTVFDSVGVRAWDSHERM  305


>gi|169245927|gb|ACA50948.1| conserved protein [Mycobacterium marinum DL240490]
Length=314

 Score = 87.8 bits (216),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 86/327 (27%), Positives = 142/327 (44%), Gaps = 42/327 (12%)

Query  1    MDQQSTRT--DITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMRE  58
            M Q  T T   ++   +G W+  AL ++  + P L+ RP  S  +   + +HPG+  +  
Sbjct  1    MSQPDTATAARLSTTSEGLWLTAALCNVAKLPPALKIRPIGSVQAT--ITDHPGIEALEN  58

Query  59   QGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPG-----------  107
             GI     V+  VAA +  L  PD+EV  + +R ++     D    PP            
Sbjct  59   AGICGGGVVDPDVAAWVTTLGRPDIEVDVVATRREMPA---DRLAGPPAIFAAPDDAVAA  115

Query  108  --------SRDIPDNEFRVVLARRGQHWVSAVRV---GNDITVDDVTVS--DSASIAALV  154
                    ++  P  +  V L RR   WV+A R+   G+D   DDV VS  +   IA +V
Sbjct  116  AEALAQWHAQRPP--QRVVALCRRDNTWVAAARLWSPGHD-GCDDVVVSPVNGDDIAQVV  172

Query  155  MDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQ  214
            +D L     ADPA  + +N     +  A  +WQ +         + R+G+S      +  
Sbjct  173  IDALGP---ADPARFHGINSEAAALATALTTWQANPNIDIVTSLVERVGLSVPQARVVEA  229

Query  215  ALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGS-GEAWLAICPA  273
            +  D A   A+ A Q+  D    +   +++ D + GR+ +   + T G  G  W  + P 
Sbjct  230  SADDGATRAAITATQFSIDGPALAPHAVTVADTTLGRVVV---STTVGPDGRKWTTLLPG  286

Query  274  TPQLVQVGVKTVLDTLPYG-EWKTHSR  299
            +   ++     +L+TLP G  W+TH R
Sbjct  287  SEAAIRTAAIELLETLPSGLNWRTHQR  313


>gi|296164028|ref|ZP_06846651.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900576|gb|EFG79959.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=313

 Score = 80.9 bits (198),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 79/315 (26%), Positives = 136/315 (44%), Gaps = 39/315 (12%)

Query  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNE  69
            ++   +G W+  AL  +  + P L+ RP  +  +   +  HPGM V+   GI     V+ 
Sbjct  12   LSTTSEGLWLTAALCGVAQLPPALKIRPIGAVQAT--IAAHPGMEVLENAGICQGGEVDP  69

Query  70   QVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFR------------  117
             VA+ ++ L  PD+E+   ++R ++    ++    PP     P++               
Sbjct  70   SVASWVRALGRPDVEIDVTITRPEIRPERLEG---PPAVFTAPEDAIEAAEALARWYAQR  126

Query  118  -----VVLARRGQHWVSAVRV---GNDITVDDVTVSD--SASIAALVMDGLESIHHADPA  167
                 V L RR   WV+A R+   G D T D+V V+      IA +V+D   +I  ADPA
Sbjct  127  PPQRVVTLCRRDNAWVAAARLWRPGQD-TSDEVVVTPLGGTEIAHVVVD---TIGPADPA  182

Query  168  AINAVNVPMEEMLEATKSWQES-GFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVY  226
              + +N     +     +WQ +   ++ +G  L  +G+S    A L +A++D     AV 
Sbjct  183  QFHGINSEAAVLNTVLSAWQANPAIDIIAG--LVEVGLSVPQ-ARLVEAVADRGTTRAVI  239

Query  227  -ARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTV  285
             A ++       +   +++ D   GR+ +         G  W  + P     +   V  +
Sbjct  240  GAAEFSISGPARAPMAVTVADTLIGRVVVSNS--VGPDGRQWTTLLPGADHAIHTAVVEL  297

Query  286  LDTLPYGE-WKTHSR  299
            L+TLP G  W TH R
Sbjct  298  LETLPSGRGWATHQR  312


>gi|119855162|ref|YP_935767.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
 gi|119697880|gb|ABL94952.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
Length=288

 Score = 62.4 bits (150),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 74/281 (27%), Positives = 132/281 (47%), Gaps = 30/281 (10%)

Query  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPG-----------MAVMRE  58
            +T  V G W+LQALL +  +   LR +P++ +  ++ + E              +++++ 
Sbjct  3    LTTTVGGVWVLQALLGVESMPTALRLKPFIPSVHHELIVETTAGPVPIAETAEYLSLVQA  62

Query  59   QGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRV  118
              I  + AV++ V   M VL  PD + V  + R            Q   + ++P  E RV
Sbjct  63   GAISPSGAVDDPVRDWMTVLGRPDRQAVLTIRR---------PSGQAVHNGELPTVEERV  113

Query  119  VLARRGQHWVS-AVRVGNDITVDDVTVSDSASIAALVM--DGLESIHHADPAAINAVNVP  175
            V+  R + W++ A R GN++ VD V  +D  ++ A +M    + ++  A PA I+ VN+P
Sbjct  114  VVVCRYRRWLAMAARDGNEMVVDAVGETDDPAVQADLMCQTLMPALGVAAPADIDGVNIP  173

Query  176  MEEMLEATKSWQESGFNVFSGGDLRRMGISA--ATVAALGQALSDPAAEVAVYARQYRDD  233
             + M    ++    G +      + R+G+    A V A    L D A  VA+      D 
Sbjct  174  ADLMQSTLEAAVPQGRDATIAA-MSRLGLQPQQAEVLAAATRLDDSAMAVAMVIDH--DI  230

Query  234  AKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPAT  274
            A+     V+++ D   GR+++     T+  G+ WL++ PAT
Sbjct  231  AQHVHPRVVTVADTEFGRVSITTS--TSADGKQWLSLWPAT  269


>gi|296165450|ref|ZP_06847986.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899190|gb|EFG78660.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=286

 Score = 59.3 bits (142),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 71/280 (26%), Positives = 118/280 (43%), Gaps = 30/280 (10%)

Query  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEH-----PGMAVMREQGIV--  62
            +  +V+  W+LQALL +  +   LR +PY+    +D++ E      P     + Q +V  
Sbjct  4    LNASVECVWVLQALLGVESMPISLRLKPYIPAAHSDFIVETDAGKVPLTGTAQYQSLVQA  63

Query  63   ----VNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRV  118
                 N  V++ V   M VL   + EVV  + R           +QP           RV
Sbjct  64   GVIDANGRVDDAVRDWMTVLGRAEREVVLTIRR----------PDQPATHDSGATVHERV  113

Query  119  -VLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHAD--PAAINAVNVP  175
             V+ R G++   A R G ++ +  V  +D  +    +M  +      D  PA I  +NVP
Sbjct  114  MVVCRYGRYLAMAARDGEEMVIGGVGETDEPTRQVELMCQMLVPAFGDHPPADIEGINVP  173

Query  176  MEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALS-DPAAEVAVYARQYRDDA  234
             + M  A  +   +   +   G LRR+G+    V  +  A + D +A   V    +  D 
Sbjct  174  KDMMQMAIDAAGHTPEGM--AGALRRLGLGPWEVEVVQAAATLDQSAMAVVAVIDHCPDV  231

Query  235  KGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPAT  274
            + P   VL++ D   GR++      T   G+ W++I P T
Sbjct  232  R-PHPRVLTVADTEYGRLSF--TTTTGADGKEWMSIWPTT  268


>gi|333989614|ref|YP_004522228.1| hypothetical protein JDM601_0974 [Mycobacterium sp. JDM601]
 gi|333485582|gb|AEF34974.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=276

 Score = 55.8 bits (133),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 80/302 (27%), Positives = 124/302 (42%), Gaps = 41/302 (13%)

Query  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLN-EHPGMAVMREQGIV-VNDAV  67
            +T  +DG W+LQ L  +  VAPEL  RP +       L   HP    +RE G++    AV
Sbjct  2    LTTTIDGLWVLQVLAGVEVVAPELGLRPVMPRVETPQLALAHPVALELREHGVIDAAGAV  61

Query  68   NEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHW  127
            +  V   + VLA  D   +ALL R       + D  +          E + VLAR  Q W
Sbjct  62   DRTVVEWLTVLARRD---IALLLR-------VQDPRR---------VEAQAVLARFAQWW  102

Query  128  VSAVRVGNDITVDDVTVSDSASIAALVMDG-LESIHH-ADPAAINAVNVPMEEMLEATKS  185
            V A R G+ + +     S S   A  V+   +E +     P     V+V    +L A  S
Sbjct  103  VVAERCGDGVRIGGAGTSVSEGEAGAVLQAQIERLCGVVPPVQFRPVDVETTALLAAAGS  162

Query  186  WQESGFNVFSGGDLRRMGISAATVAALGQALSDP--AAEVAVYARQYRDDAKGPSAS---  240
              ES  N  +         SA  +  L  A +DP  + + ++ A Q   +   P+ +   
Sbjct  163  -PESVQNYLTSQPF-----SAEQLQIL-LAATDPTRSTQTSIAALQAGVETGRPTRTHIH  215

Query  241  --VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLP-YGEWKTH  297
               +S+ D   GR+ +     +  +G   + + P T   +   V  +L  LP + EW + 
Sbjct  216  PGAVSIIDIPAGRVVVEH---SVSAGRQQMLVVPGTASNIAAAVNKMLRRLPAHHEWHSS  272

Query  298  SR  299
             R
Sbjct  273  RR  274


>gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
 gi|296180926|gb|ADG97832.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
Length=274

 Score = 50.8 bits (120),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 57/243 (24%), Positives = 99/243 (41%), Gaps = 29/243 (11%)

Query  54   AVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPD  113
            A + E+GI+  +AV+ ++ A ++ L  PD E+   + RG+ +                  
Sbjct  54   AELNEKGILRGEAVHPELQAWLEALDHPDRELSGRVKRGESM------------------  95

Query  114  NEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVN  173
               R+ L RRG     A+R G+++ + +       S   L    L  +        N V+
Sbjct  96   --LRMALVRRGDVHALAIRYGDEVVIQNFEYDAQKSSGQLARAALVVLGEGVIPDFNRVS  153

Query  174  VPMEEMLEATKSWQESGFNVFSGGDLRRMGISA--ATVAALGQALSDPAAEVAVYARQYR  231
             P + +++A     +    V++   L R+G S   A V A   A  +  +E  VY R   
Sbjct  154  APTQSIVDAMPRNVDLD-AVYTS--LLRVGASQKDAKVLATIMATVEVQSEFVVYERGDG  210

Query  232  DDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPY  291
              A+G  A  +S+ D   GR         A  GE W  + P T   +     ++++ LP 
Sbjct  211  PRARGKGA--VSVFDSPKGRFV--SSPSVASDGEIWSTMTPGTDHRISQAFNSLIELLPS  266

Query  292  GEW  294
             +W
Sbjct  267  EQW  269


>gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316254758|gb|EFV14058.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC 
BAA-974]
Length=274

 Score = 48.1 bits (113),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 56/256 (22%), Positives = 102/256 (40%), Gaps = 36/256 (14%)

Query  43   SNDW--LNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVID  100
            S +W  +NE      + E+GI+  + V+ ++   ++ L  P+ E+   + R + +     
Sbjct  46   SKEWKLMNEE-----LNEKGILRGETVHPELQLWLEALDHPERELSGRIKRQETM-----  95

Query  101  DENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLES  160
                            R+ L RRG+    A+R G+++ + D       S   L    L  
Sbjct  96   ---------------LRMALVRRGRTHALAIRYGDEVVIQDFEYEAEKSAGQLAKPVLAV  140

Query  161  IHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISA--ATVAALGQALSD  218
            +        N V+ P + ++++     +    VF+   L R+G S   A V A   A  +
Sbjct  141  LGEGVVPDFNRVSAPTQSIVDSMPRNIDLD-AVFT--SLLRVGASQKDAKVLATIMANVE  197

Query  219  PAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLV  278
              +E  V+ R+     +G  A  +S+ D   GR         AG GE W    P T   +
Sbjct  198  VQSEFVVHEREEGPRVRGKGA--VSIFDSPKGRFV--SSPSVAGDGEIWSTFTPGTDHRI  253

Query  279  QVGVKTVLDTLPYGEW  294
                 ++++ LP  +W
Sbjct  254  SQAFTSLIELLPSEKW  269


>gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_03472 [Mycobacterium kansasii ATCC 
12478]
Length=283

 Score = 47.4 bits (111),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 46/191 (25%), Positives = 84/191 (44%), Gaps = 20/191 (10%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RD+     R V+ R+    V AVR G+ + +    V+    +A +V   L +   ADPA+
Sbjct  102  RDVGGVMVRFVVCRKDDRHVIAVRNGDLLVLQ--LVAPQVGLAGMVTAVLGT---ADPAS  156

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            +  +     E+ E T + Q           L R G++        + +S+P + V + A 
Sbjct  157  VEPLTGIASELAECTTAAQ-----------LTRYGLAPTAARIYTEIVSNPDSWVEIVAS  205

Query  229  Q-YRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLD  287
            Q +       + +   + D + GR+    +     SGE + +  P TPQ +Q+ +  +++
Sbjct  206  QRHPGGTTTHTKAAAGVLDSAHGRVVSLPRIV---SGELYGSFLPGTPQNLQLALDALVE  262

Query  288  TLPYGEWKTHS  298
             LP G W  H+
Sbjct  263  LLPAGSWLDHA  273


>gi|226363324|ref|YP_002781106.1| hypothetical protein ROP_39140 [Rhodococcus opacus B4]
 gi|226241813|dbj|BAH52161.1| hypothetical protein [Rhodococcus opacus B4]
Length=264

 Score = 47.0 bits (110),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 42/162 (26%), Positives = 72/162 (45%), Gaps = 12/162 (7%)

Query  128  VSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQ  187
            V A+R G++  V D      A I A V+  L ++   +P  +  VN P  ++ EA   + 
Sbjct  114  VLALRAGDEFVVQDA----GADIFAPVIGALGAV---EPLHVGVVNAPTVQLGEA---FD  163

Query  188  ESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDG  247
            + G      G L  +G+ A    ALG A++       +    Y D    P    +++ D 
Sbjct  164  QGGDGKSLAGALAALGVPAVDATALGNAMAGCTTYAEIVGIVYGDGQYDPVGGPVTVFDT  223

Query  248  SGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTL  289
              GRI     +  +  G AW ++ P TPQ ++  ++++ D L
Sbjct  224  RAGRIV--GTSSVSAHGVAWSSLSPGTPQRLRQALESLADRL  263


>gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC 
16433]
 gi|343762321|dbj|GAA14074.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC 
16433]
Length=268

 Score = 46.6 bits (109),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 41/180 (23%), Positives = 74/180 (42%), Gaps = 8/180 (4%)

Query  117  RVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPM  176
            R+ LARRG   V A R G+ + +  V V+D  ++A L+    +    A      + +VP 
Sbjct  97   RICLARRGYEHVLAERAGDRLDLSVVEVADLDAVADLLRSRFDD---AAACEFTSFSVPT  153

Query  177  EEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKG  236
            +++++       SG        L  +G   +    +  A +       + A    D    
Sbjct  154  DDLVDGLG---RSGSATEITDALYTLGAPLSDAVVISSAFASCRVRTEIVASANEDGRFS  210

Query  237  PSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKT  296
             S+  L++ D + GRI        +  G  W  + P +   +   V+ +++TLP G W T
Sbjct  211  QSSGALAVFDTARGRI--VSSPSKSPDGRVWTTLSPGSGHRIAQAVRLLIETLPDGTWST  268


>gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 [Rhodococcus jostii RHA1]
 gi|110820549|gb|ABG95833.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=284

 Score = 46.2 bits (108),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 44/173 (26%), Positives = 74/173 (43%), Gaps = 12/173 (6%)

Query  117  RVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPM  176
            R+ ++R     V A+R G+   V D      A I A V+  L +   ADP  +  VN P 
Sbjct  103  RLCISRGETLSVLALRAGDTYVVQDA----GADIFAPVIGALGA---ADPMNVGVVNAPT  155

Query  177  EEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKG  236
             ++ E    +   G        L  +G++AA    LG  ++       +    Y D    
Sbjct  156  VQLGEV---FDHGGDGKSLAAALTALGVTAADATVLGNGMAACTTYAEIVGIVYGDGRYD  212

Query  237  PSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTL  289
            P    +++ D S GRI     +  +  G AW ++ P TPQ ++  ++++ D L
Sbjct  213  PVGGPVTVFDTSAGRIV--GTSSVSAHGVAWSSLSPGTPQRLRQALESLTDRL  263


>gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
 gi|262086865|gb|ACY22833.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
Length=275

 Score = 44.7 bits (104),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 45/187 (25%), Positives = 76/187 (41%), Gaps = 9/187 (4%)

Query  109  RDIPDNEFR-VVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPA  167
            R I D  FR + LAR G   V AVR G  I +  V+ +    + AL+   L       P 
Sbjct  95   RTIADAGFRRICLARSGNDHVLAVRDGARIELSVVSPTGVGELGALLRARLP---ERAPC  151

Query  168  AINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYA  227
              +A++ P  E+L+     + SG ++     L  MG S      +  A +    +  + A
Sbjct  152  VFDAISHPAAELLDRLGRCR-SGLDMTDA--LHAMGASPGDAMVVSAAFASCRVQTEIVA  208

Query  228  RQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLD  287
              +       S+  +++ D   GRI        +  G  W  + P +   +   +  +++
Sbjct  209  VAHDAGVLTQSSGAVAILDTDKGRI--VSSPSKSPDGRVWTTLSPGSGHRIAQAIGLLIE  266

Query  288  TLPYGEW  294
            TLP G W
Sbjct  267  TLPDGRW  273


>gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium leprae TN]
 gi|221230839|ref|YP_002504255.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
 gi|13093792|emb|CAC32061.1| possible DNA-binding protein [Mycobacterium leprae]
 gi|219933946|emb|CAR72629.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length=289

 Score = 43.9 bits (102),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 44/173 (26%), Positives = 75/173 (44%), Gaps = 8/173 (4%)

Query  128  VSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQ  187
            V A+R    IT   + + D   +  ++  GL       PA  +  ++PM   + A +  +
Sbjct  116  VVALRSAQLITFTAMDIDDPLRLVPILGAGL---AQRPPARFDEFSMPMRVGVRADERLR  172

Query  188  ESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDG  247
             SG ++    D   +GI  +    +    S P + V + A   RD     +   +S+ D 
Sbjct  173  -SGTSLAEVADY--LGIPKSAQPVVESVFSGPRSYVEIVAGCRRDGKHATTEVGMSIVDT  229

Query  248  SGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV  300
            + GR+ L   +R A  GE      P TP  + VG++ +  TLP G+W    R+
Sbjct  230  TTGRV-LVNPSR-AFDGEWVSTFSPGTPFAIAVGIEQLTATLPEGQWFPGQRL  280


>gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 [Mycobacterium marinum M]
 gi|183178738|gb|ACC43848.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=279

 Score = 43.5 bits (101),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 46/188 (25%), Positives = 81/188 (44%), Gaps = 22/188 (11%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RD+     R V+ R+G+  V AVR G+ + +    V+    +A +V   L +   A+PA 
Sbjct  102  RDVGGVMVRFVVCRKGERHVIAVRDGDMLVLQ--LVAPRVGLAGMVTAVLGT---AEPAN  156

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYA-  227
            +  +     E+ E T + Q           L R G++  T     + +++P + V + A 
Sbjct  157  VEPLTGIASELGECTNAAQ-----------LTRYGLTPTTARLYTEIVTNPKSWVEIVAS  205

Query  228  -RQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVL  286
             R          A+   L    G  ++L +Q      GE + +  P T Q +Q  + ++L
Sbjct  206  ERHPGGTTTHTKAAAGVLDSAHGRLVSLPRQV----GGELYGSFLPGTEQNLQRALDSLL  261

Query  287  DTLPYGEW  294
            + LP G W
Sbjct  262  ELLPSGSW  269


>gi|289760400|ref|ZP_06519778.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289707906|gb|EFD71922.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=239

 Score = 43.1 bits (100),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 61/257 (24%), Positives = 100/257 (39%), Gaps = 36/257 (14%)

Query  53   MAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIP  112
            M ++  QG++     N  VA  +KV+  PD                +D     P S D  
Sbjct  1    MGLLSPQGVI-----NPAVADWIKVVCFPDRW--------------LDLRYVGPASADGA  41

Query  113  DNEFRVVLARRGQHWVSAVRVGNDI---------TVDDVTVSDSASIAALVMDGLESIHH  163
                R ++A R     ++ + GN +         T   + + D  ++  ++  GL    H
Sbjct  42   CELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---H  98

Query  164  ADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEV  223
              PA  +  ++P      A +  +     V  G  +  +GI A+    +    S P + V
Sbjct  99   RPPARFDEFSLPTRVGARADERLRS---GVPLGEVVDYLGIPASARPVVESVFSGPRSYV  155

Query  224  AVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVK  283
             + A   RD     +   LS+ D S GR+ L   +R A  GE      P TP  + V ++
Sbjct  156  EIVAGCNRDGRHTTTEVGLSIVDTSAGRV-LVSPSR-AFDGEWVSTFSPGTPFAIAVAIQ  213

Query  284  TVLDTLPYGEWKTHSRV  300
            T+   LP G+W    RV
Sbjct  214  TLTACLPDGQWFPGQRV  230


>gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418786|gb|EFD15987.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=294

 Score = 42.7 bits (99),  Expect = 0.061, Method: Compositional matrix adjust.
 Identities = 61/257 (24%), Positives = 100/257 (39%), Gaps = 36/257 (14%)

Query  53   MAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIP  112
            M ++  QG++     N  VA  +KV+  PD                +D     P S D  
Sbjct  56   MGLLSPQGVI-----NPAVADWIKVVCFPDRW--------------LDLRYVGPASADGA  96

Query  113  DNEFRVVLARRGQHWVSAVRVGNDI---------TVDDVTVSDSASIAALVMDGLESIHH  163
                R ++A R     ++ + GN +         T   + + D  ++  ++  GL    H
Sbjct  97   CELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---H  153

Query  164  ADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEV  223
              PA  +  ++P      A +  +     V  G  +  +GI A+    +    S P + V
Sbjct  154  RPPARFDEFSLPTRVGARADERLRS---GVPLGEVVDYLGIPASARPVVESVFSGPRSYV  210

Query  224  AVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVK  283
             + A   RD     +   LS+ D S GR+ L   +R A  GE      P TP  + V ++
Sbjct  211  EIVAGCNRDGRHTTTEVGLSIVDTSAGRV-LVSPSR-AFDGEWVSTFSPGTPFAIAVAIQ  268

Query  284  TVLDTLPYGEWKTHSRV  300
            T+   LP G+W    RV
Sbjct  269  TLTACLPDGQWFPGQRV  285


>gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycobacterium tuberculosis H37Rv]
 gi|15839675|ref|NP_334712.1| hypothetical protein MT0302 [Mycobacterium tuberculosis CDC1551]
 gi|31791468|ref|NP_853961.1| hypothetical protein Mb0297 [Mycobacterium bovis AF2122/97]
 71 more sequence titles
 Length=295

 Score = 42.7 bits (99),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 61/257 (24%), Positives = 100/257 (39%), Gaps = 36/257 (14%)

Query  53   MAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIP  112
            M ++  QG++     N  VA  +KV+  PD                +D     P S D  
Sbjct  57   MGLLSPQGVI-----NPAVADWIKVVCFPDRW--------------LDLRYVGPASADGA  97

Query  113  DNEFRVVLARRGQHWVSAVRVGNDI---------TVDDVTVSDSASIAALVMDGLESIHH  163
                R ++A R     ++ + GN +         T   + + D  ++  ++  GL    H
Sbjct  98   CELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---H  154

Query  164  ADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEV  223
              PA  +  ++P      A +  +     V  G  +  +GI A+    +    S P + V
Sbjct  155  RPPARFDEFSLPTRVGARADERLRS---GVPLGEVVDYLGIPASARPVVESVFSGPRSYV  211

Query  224  AVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVK  283
             + A   RD     +   LS+ D S GR+ L   +R A  GE      P TP  + V ++
Sbjct  212  EIVAGCNRDGRHTTTEVGLSIVDTSAGRV-LVSPSR-AFDGEWVSTFSPGTPFAIAVAIQ  269

Query  284  TVLDTLPYGEWKTHSRV  300
            T+   LP G+W    RV
Sbjct  270  TLTACLPDGQWFPGQRV  286


>gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocardia farcinica IFM 10152]
 gi|54014296|dbj|BAD55666.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264

 Score = 42.4 bits (98),  Expect = 0.093, Method: Compositional matrix adjust.
 Identities = 59/235 (26%), Positives = 99/235 (43%), Gaps = 40/235 (17%)

Query  67   VNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQH  126
            V+ ++A  M VLA PD E+VA +  G         +  P           R+ LA RG+ 
Sbjct  60   VDPELADAMYVLAQPDRELVARVYPG---------DGAP----------TRLCLALRGER  100

Query  127  WVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEM---LEAT  183
               A+R G+DI ++     +S S     +  L ++  A+PA +   + P  E+   L A 
Sbjct  101  HALALRRGDDIRIEPAWSDESGSALVAAL--LRALGPAEPADVAPFSAPAAELAERLSAA  158

Query  184  KSWQESGFNVFSGG----DLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSA  239
            ++  +    V++ G    D  R G++  +  A         AE+  YA       + P A
Sbjct  159  RTSADFTDAVYALGVAERDAPRYGLAFESCRAY--------AEIVAYAHVDGVTTRPPCA  210

Query  240  SVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEW  294
            +V+   +   GRI +      A   + W  + P T   V   +  +++TLP G W
Sbjct  211  AVV--YETGRGRIVVAPG--IAPDQQVWSTVTPGTDHRVAQAISGLIETLPGGRW  261


>gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
 gi|145213412|gb|ABP42816.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
Length=290

 Score = 41.2 bits (95),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 47/179 (27%), Positives = 76/179 (43%), Gaps = 8/179 (4%)

Query  116  FRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVP  175
             R VLAR G   V A+R G  IT+ ++ +    ++  +V  GL       PA  +  ++P
Sbjct  94   LRGVLARDGAGTVIALRSGGLITLTELDIDHPEALVPVVTAGLSG---RAPARFDGFSLP  150

Query  176  MEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAK  235
                 +A +  ++       GG L  +GI  +    +  A  D    V + A Q+RD  +
Sbjct  151  ARVGAKADEQIRK---GAAVGGLLDYLGIPPSARPVVVAAFEDSRTYVEIVAGQHRDGHR  207

Query  236  GPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEW  294
              +   +S+ D   GR+ L   A+ A  GE      P  P  +   V+ +   LP G W
Sbjct  208  VSTDVGVSVVDTVLGRV-LVSPAK-ARDGEWISTFAPGDPVAIAAAVERLTAALPDGPW  264


>gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
 gi|315260407|gb|ADT97148.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
Length=290

 Score = 40.4 bits (93),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 45/179 (26%), Positives = 74/179 (42%), Gaps = 8/179 (4%)

Query  116  FRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVP  175
             R VLAR G   V A+R G  IT+ ++ +    ++  +V  GL       PA  +  ++P
Sbjct  94   LRGVLARDGAGTVIALRSGGLITLTELDIDHPEALVPVVTAGLSG---RAPARFDGFSLP  150

Query  176  MEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAK  235
                 +A +  ++       GG L  +GI  +    +  A  D    V + A Q+RD  +
Sbjct  151  ARVGAKADEQIRK---GAAVGGLLDYLGIPPSARPVVVAAFEDSRTYVEIVAGQHRDGHR  207

Query  236  GPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEW  294
              +   +S+ D   GR+ +      A  GE      P  P  +   V+ +   LP G W
Sbjct  208  VSTDVGVSVVDTVLGRVLVCPA--KARDGEWISTFAPGDPVAIAAAVERLTAALPDGPW  264


>gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837 [Mycobacterium tuberculosis 
210]
Length=268

 Score = 39.7 bits (91),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 49/194 (26%), Positives = 78/194 (41%), Gaps = 26/194 (13%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RDI     R V+ RRG   V A R G+ + +    V+    +A +V   L     A+PA 
Sbjct  87   RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVTAVLGP---AEPAN  141

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            +  +     E+ E T + Q           L + GI+ A+     + + +P   V + A 
Sbjct  142  VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS  190

Query  229  QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT  284
            Q            +A VL  K G      L    R  G G+ + +  P T Q ++  +  
Sbjct  191  QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG  244

Query  285  VLDTLPYGEWKTHS  298
            +L+ LP G W  H+
Sbjct  245  LLELLPAGAWLDHT  258


>gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 [Mycobacterium tuberculosis SUMu001]
 gi|308369263|ref|ZP_07417096.2| hypothetical protein TMBG_02406 [Mycobacterium tuberculosis SUMu002]
 gi|308371485|ref|ZP_07425109.2| hypothetical protein TMCG_01376 [Mycobacterium tuberculosis SUMu003]
 21 more sequence titles
 Length=285

 Score = 39.7 bits (91),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 48/194 (25%), Positives = 78/194 (41%), Gaps = 26/194 (13%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RDI     R V+ RRG   V A R G+ + +    V+    +A +V      +  A+PA 
Sbjct  104  RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN  158

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            +  +     E+ E T + Q           L + GI+ A+     + + +P   V + A 
Sbjct  159  VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS  207

Query  229  QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT  284
            Q            +A VL  K G      L    R  G G+ + +  P T Q ++  +  
Sbjct  208  QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG  261

Query  285  VLDTLPYGEWKTHS  298
            +L+ LP G W  H+
Sbjct  262  LLELLPAGAWLDHT  275


>gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881 [Mycobacterium canettii CIPT 
140010059]
 gi|340007028|emb|CCC46219.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=283

 Score = 39.7 bits (91),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 48/194 (25%), Positives = 78/194 (41%), Gaps = 26/194 (13%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RDI     R V+ RRG   V A R G+ + +    V+    +A +V      +  A+PA 
Sbjct  102  RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN  156

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            +  +     E+ E T + Q           L + GI+ A+     + + +P   V + A 
Sbjct  157  VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS  205

Query  229  QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT  284
            Q            +A VL  K G      L    R  G G+ + +  P T Q ++  +  
Sbjct  206  QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG  259

Query  285  VLDTLPYGEWKTHS  298
            +L+ LP G W  H+
Sbjct  260  LLELLPAGAWLDHT  273


>gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycobacterium tuberculosis H37Rv]
 gi|31795040|ref|NP_857533.1| hypothetical protein Mb3896 [Mycobacterium bovis AF2122/97]
 gi|121639784|ref|YP_980008.1| hypothetical protein BCG_3929 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 50 more sequence titles
 Length=283

 Score = 39.7 bits (91),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 48/194 (25%), Positives = 78/194 (41%), Gaps = 26/194 (13%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RDI     R V+ RRG   V A R G+ + +    V+    +A +V      +  A+PA 
Sbjct  102  RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN  156

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            +  +     E+ E T + Q           L + GI+ A+     + + +P   V + A 
Sbjct  157  VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVEIVAS  205

Query  229  QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT  284
            Q            +A VL  K G      L    R  G G+ + +  P T Q ++  +  
Sbjct  206  QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG  259

Query  285  VLDTLPYGEWKTHS  298
            +L+ LP G W  H+
Sbjct  260  LLELLPAGAWLDHT  273


>gi|270293185|ref|ZP_06199396.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
sp. M143]
 gi|270279164|gb|EFA25010.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
sp. M143]
Length=744

 Score = 38.9 bits (89),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 28/98 (29%), Positives = 47/98 (48%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++     ME+ +E  +   E G N+   GD    G
Sbjct  45   IQDEESLKKFLEPSLEDLH--DPYLLH----DMEKAVERIRQAIEEGENILIYGDYDADG  98

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  99   MTSASI--MKESLEQLGAECRVYLPNRFTDGYGPNASV  134


>gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298497134|gb|EFI32428.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=283

 Score = 38.5 bits (88),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 48/194 (25%), Positives = 77/194 (40%), Gaps = 26/194 (13%)

Query  109  RDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAA  168
            RDI     R V+ RRG   V A R G+ + +    V+    +A +V      +  A+PA 
Sbjct  102  RDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ--LVAPQVGLAGMVT---AVLGPAEPAN  156

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            +  +     E+ E T + Q           L + GI+ A+     + + +P   V   A 
Sbjct  157  VEPLTGVATELAECTTASQ-----------LTQYGIAPASARVYAEIVGNPTGWVETVAS  205

Query  229  QYRDDAKGP----SASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKT  284
            Q            +A VL  K G      L    R  G G+ + +  P T Q ++  +  
Sbjct  206  QRHPGGTTTQTDAAAGVLDSKLGR-----LVSLPRRVG-GDLYGSFLPGTQQNLERALDG  259

Query  285  VLDTLPYGEWKTHS  298
            +L+ LP G W  H+
Sbjct  260  LLELLPAGAWLDHT  273


>gi|342860124|ref|ZP_08716776.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT 
3035]
 gi|342132502|gb|EGT85731.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT 
3035]
Length=276

 Score = 38.1 bits (87),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 70/310 (23%), Positives = 126/310 (41%), Gaps = 55/310 (17%)

Query  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVVNDA--  66
            +T  VDG W+LQAL  +    PEL  RP +   D+ +    HP  A        +++A  
Sbjct  2    LTTTVDGLWVLQALTGVEQTCPELGLRPMLPRLDTPERAKGHP-AAAELVAAGALDEAGN  60

Query  67   VNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNE-FRVVLARRGQ  125
            V+  +   + VL   D+ ++A++                     +P  E  R  + R   
Sbjct  61   VDPMIREWLTVLLRRDIALLAMIG--------------------VPGREPTRASICRFAT  100

Query  126  HWVSAVRVGNDITVDDV-TVSDSASIAALVMDGLESIHH-ADPAAINAVNVPMEEMLEA-  182
             WV   R G+ + +    T  + AS + L++  +E +   A+ A +  V +  E++L + 
Sbjct  101  WWVVLERHGDMVRLYPAGTAGNEASASDLLVGQIERLCGVAEAAPLKPVTLDTEQLLNSV  160

Query  183  --TKSWQESGFNVFSGGDLRRMGISAATVAALGQAL---------SDPAAEVAVYARQYR  231
              T S +          D  +M ++AA  A    A           D  A +AV      
Sbjct  161  RDTASLRSFLLEQRLDADQLQMVLTAADPARSAHANIVGLQAGVGPDEQARIAV------  214

Query  232  DDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPY  291
                    S +S+ D   GRI +  ++ T+G  + +  + P +   +   ++ ++  LP 
Sbjct  215  ------GESTVSIVDTPAGRICI--ESVTSGQRQ-YQILSPGSRTDIGGAIQRLIRRLPA  265

Query  292  G-EWKTHSRV  300
            G EW ++ RV
Sbjct  266  GDEWHSYRRV  275


>gi|340723971|ref|XP_003400360.1| PREDICTED: LOW QUALITY PROTEIN: DEP domain-containing protein 
5-like [Bombus terrestris]
Length=1553

 Score = 38.1 bits (87),  Expect = 1.9, Method: Composition-based stats.
 Identities = 40/151 (27%), Positives = 62/151 (42%), Gaps = 21/151 (13%)

Query  31    PELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLS  90
             P L  + +VS D+  WLN H    V  E  I   + +N  +  ++   A+ D     +L 
Sbjct  1121  PSLPSQTFVSADAVQWLNNHIEGGVTVESAI---NIMNGMIQDKLICHASGDFSKPFIL-  1176

Query  91    RGKLLYGVIDD-ENQPPGSRDIP-------DNEFRVVLARRGQHWVSAVRVGN-------  135
              G  LY ++ D ENQ  G    P       +NE+  V  R  + W      G+       
Sbjct  1177  -GFYLYHIVQDKENQRAGDYFSPLGDLQSFENEWVEVEIRAPKGWCEPSSPGSFPLMSSP  1235

Query  136   -DITVDDVTVSDSASIAALVMDGLESIHHAD  165
               I   D T+ D +++A  + D L+    AD
Sbjct  1236  MTIPSCDTTIVDESNVAPFLKDELDISDMAD  1266


>gi|328784122|ref|XP_003250400.1| PREDICTED: DEP domain-containing protein 5-like [Apis mellifera]
Length=1544

 Score = 37.7 bits (86),  Expect = 2.3, Method: Composition-based stats.
 Identities = 38/150 (26%), Positives = 65/150 (44%), Gaps = 21/150 (14%)

Query  31    PELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAV---NEQVAARMKVLAAPDLEVVA  87
             P L  + +VS D+  WLN H       E G+ V +A+   N  +  ++   A+ D     
Sbjct  1119  PSLPSQTFVSADAVQWLNNHI------EGGVTVENAINIMNGMIQDKLICHASGDFSKPF  1172

Query  88    LLSRGKLLYGVIDD-ENQPPGSRDIP-------DNEFRVVLARRGQHWVSAVRVGN--DI  137
             +L  G  LY ++ D ENQ  G    P       +NE+  V  +  + W      G+   +
Sbjct  1173  IL--GFYLYHIVQDKENQRAGDYFSPLGDLQSFENEWVEVEIKAPKGWCEPPSSGSFPPM  1230

Query  138   TVDDVTVSDSASIAALVMDGLESIHHADPA  167
             T+ +    D +++ + + D L+    AD A
Sbjct  1231  TISNCDTVDESNVVSFLKDDLDISDIADEA  1260


>gi|54022099|ref|YP_116341.1| hypothetical protein nfa1350 [Nocardia farcinica IFM 10152]
 gi|54013607|dbj|BAD54977.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=266

 Score = 37.0 bits (84),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 39/185 (22%), Positives = 78/185 (43%), Gaps = 22/185 (11%)

Query  126  HWVSAVRVGNDITVDDVTVSDSASIAALVMDGLES-----------------IHHADPAA  168
            HWV A+R+  +  V  + ++    +A + + G +S                 +  A+P  
Sbjct  77   HWVLALRLVVEGQVSRMCLAQGDDMAVVALRGPQSYVVDEVDEDLPGPLVAALGSAEPLE  136

Query  169  INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYAR  228
            + ++N   E +      + ++G +  +   L ++   A  V  L  AL +  +   +   
Sbjct  137  LESMNAQTELL---APIFGDAGDSAATANRLAKVCQPARDVQTLASALVEIRSHTQISGV  193

Query  229  QYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDT  288
             Y D  +  + S +++ D  GGRI L   A  A  G  W +I   T   ++  ++ ++D+
Sbjct  194  VYGDGIRDIADSHVAVFDTRGGRIVL--TASVADDGTKWTSISSGTTARLRTAIQDLIDS  251

Query  289  LPYGE  293
            LP  E
Sbjct  252  LPERE  256


>gi|289168420|ref|YP_003446689.1| single-stranded DNA-specific exonuclease [Streptococcus mitis 
B6]
 gi|288907987|emb|CBJ22827.1| single-stranded DNA-specific exonuclease [Streptococcus mitis 
B6]
Length=788

 Score = 37.0 bits (84),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  89   IQDQESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILVYGDYDADG  142

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  143  MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV  178


>gi|343388804|gb|EGV01389.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
oralis SK313]
Length=758

 Score = 37.0 bits (84),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  60   IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILVYGDYDADG  113

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  114  MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV  149


>gi|342831685|gb|EGU65996.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
mitis bv. 2 str. SK95]
Length=740

 Score = 37.0 bits (84),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  41   IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILVYGDYDADG  94

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  95   MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV  130


>gi|342163306|ref|YP_004767945.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
pseudopneumoniae IS7493]
 gi|341933188|gb|AEL10085.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
pseudopneumoniae IS7493]
Length=740

 Score = 37.0 bits (84),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 47/98 (48%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  41   IQDQESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG  94

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++    ++L    AE  VY      D  GP+ASV
Sbjct  95   MTSASIVK--ESLEQLGAECRVYLPNRFTDGYGPNASV  130


>gi|334274112|gb|EGL92440.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
oralis SK255]
Length=759

 Score = 36.6 bits (83),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  60   IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG  113

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  114  MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV  149


>gi|194290140|ref|YP_002006047.1| hypothetical protein RALTA_A2044 [Cupriavidus taiwanensis LMG 
19424]
 gi|193223975|emb|CAQ69984.1| Conserved hypothetical protein; putative membrane protein [Cupriavidus 
taiwanensis LMG 19424]
Length=368

 Score = 36.6 bits (83),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 29/88 (33%), Positives = 41/88 (47%), Gaps = 14/88 (15%)

Query  182  ATKSWQ----ESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGP  237
            AT  W     E  F +F+G  L  +    A V A G+ +S+P A+ AV A+  R  A GP
Sbjct  200  ATGHWHWAVSERMFGIFTGATLHEV----AQVIAAGKMISEPTADAAVVAKMVRVLALGP  255

Query  238  SASVLSLKDGSGGRIALYQQARTAGSGE  265
               V++L    G       QA  +G+G 
Sbjct  256  LLLVMALWPQGG------SQAGASGAGT  277


>gi|315612726|ref|ZP_07887637.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
sanguinis ATCC 49296]
 gi|315314836|gb|EFU62877.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
sanguinis ATCC 49296]
Length=757

 Score = 36.6 bits (83),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  60   IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG  113

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  114  MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV  149


>gi|322374747|ref|ZP_08049261.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
sp. C300]
 gi|321280247|gb|EFX57286.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus 
sp. C300]
Length=743

 Score = 36.6 bits (83),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  144  VSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMG  203
            + D  S+   +   LE +H  DP  ++ ++  +E + +A     E G N+   GD    G
Sbjct  45   IQDEESLKKFLEPSLEDLH--DPYLLHDMDKAVERIRQAI----EEGENILIYGDYDADG  98

Query  204  ISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASV  241
            +++A++  + ++L    AE  VY      D  GP+ASV
Sbjct  99   MTSASI--VKESLEQLGAECRVYLPNRFTDGYGPNASV  134



Lambda     K      H
   0.316    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 505145727648


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40