BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1799

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608936|ref|NP_216315.1|  lipoprotein LppT [Mycobacterium tub...   122    2e-26


>gi|15608936|ref|NP_216315.1| lipoprotein LppT [Mycobacterium tuberculosis H37Rv]
 gi|15841268|ref|NP_336305.1| hypothetical protein MT1848 [Mycobacterium tuberculosis CDC1551]
 gi|31792987|ref|NP_855480.1| lipoprotein LppT [Mycobacterium bovis AF2122/97]
 56 more sequence titles
 Length=63

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  1   MSVKSKNGRLAARVLVALAALFAMIALTGSACLAEGPPLGRNPQGAPAPVGGTVIVAPMH  60
           MSVKSKNGRLAARVLVALAALFAMIALTGSACLAEGPPLGRNPQGAPAPVGGTVIVAPMH
Sbjct  1   MSVKSKNGRLAARVLVALAALFAMIALTGSACLAEGPPLGRNPQGAPAPVGGTVIVAPMH  60

Query  61  SGV  63
           SGV
Sbjct  61  SGV  63



Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131230491224


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40